Query psy5134
Match_columns 648
No_of_seqs 421 out of 1409
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 18:13:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5134.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5134hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1a32_A Ribosomal protein S15; 100.0 6.4E-31 2.2E-35 228.4 11.4 85 460-544 3-87 (88)
2 3r8n_O 30S ribosomal protein S 100.0 6.3E-31 2.2E-35 228.3 11.2 85 460-544 3-87 (88)
3 2vqe_O 30S ribosomal protein S 100.0 6.1E-31 2.1E-35 228.9 10.8 85 460-544 4-88 (89)
4 4a5u_B 30S ribosomal protein S 100.0 6.9E-31 2.4E-35 228.1 10.5 85 460-544 3-87 (88)
5 3ulw_A 30S ribosomal protein S 100.0 1.1E-30 3.8E-35 228.9 7.9 87 459-545 6-92 (93)
6 3bbn_O Ribosomal protein S15; 99.9 2.5E-28 8.6E-33 212.5 3.2 82 464-545 3-86 (90)
7 3j20_Q 30S ribosomal protein S 99.3 3.3E-12 1.1E-16 121.1 7.1 97 422-530 44-140 (158)
8 3u5c_N S27A, YS15, 40S ribosom 96.9 0.001 3.5E-08 62.8 6.1 46 485-530 88-133 (151)
9 2xzm_O RPS13E; ribosome, trans 95.5 0.018 6E-07 54.5 6.1 46 485-530 90-135 (153)
10 3tl4_X Glutaminyl-tRNA synthet 56.0 10 0.00036 36.9 4.5 24 605-628 107-130 (187)
11 1gmj_A ATPase inhibitor; coile 45.6 1.5E+02 0.005 25.5 9.6 59 555-633 22-80 (84)
12 3ff5_A PEX14P, peroxisomal bio 44.3 17 0.00057 28.9 3.1 14 609-626 40-53 (54)
13 2w84_A Peroxisomal membrane pr 31.2 36 0.0012 28.3 3.3 16 608-627 44-59 (70)
14 2ke4_A CDC42-interacting prote 22.9 1.9E+02 0.0064 25.2 6.6 57 574-633 21-77 (98)
15 1pq4_A Periplasmic binding pro 21.5 1.4E+02 0.0049 30.0 6.5 47 194-240 219-266 (291)
16 2vxz_A Pyrsv_GP04; viral prote 20.7 34 0.0012 32.5 1.5 33 513-546 7-39 (165)
17 1quu_A Human skeletal muscle a 20.3 1.7E+02 0.0058 28.2 6.5 54 572-632 7-62 (250)
No 1
>1a32_A Ribosomal protein S15; multiwavelength anomalous diffraction, protein-RNA, ribosomal protein interactions, ribosome, RNA-binding; 2.10A {Geobacillus stearothermophilus} SCOP: a.16.1.2 PDB: 1qd7_H
Probab=99.97 E-value=6.4e-31 Score=228.38 Aligned_cols=85 Identities=25% Similarity=0.372 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHhhcCCCCCCCHhHHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Q psy5134 460 VELVKKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLD 539 (648)
Q Consensus 460 ~k~~k~~~i~~f~r~~~DtGS~EVQIA~LT~rIr~L~eHl~~~~KD~~~kr~L~~li~kRrKlLkYLrr~d~~~y~~li~ 539 (648)
++.+|+++|++|++|++||||+|||||+||+||++|++||+.||||++++|||++||++|+|||+||+++|+++|+++|+
T Consensus 3 ~~~~K~~ii~~~~~~~~DTGS~EvQIA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YL~~~d~~rY~~li~ 82 (88)
T 1a32_A 3 TQERKREIIEQFKVHENDTGSPEVQIAILTEQINNLNEHLRVHKKDHHSRRGLLKMVGKRRRLLAYLRNKDVARYREIVE 82 (88)
T ss_dssp CHHHHHHHHHHTCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCc
Q psy5134 540 ELKIV 544 (648)
Q Consensus 540 ~LgL~ 544 (648)
+|||+
T Consensus 83 ~Lglr 87 (88)
T 1a32_A 83 KLGLR 87 (88)
T ss_dssp HHTC-
T ss_pred HhCCC
Confidence 99997
No 2
>3r8n_O 30S ribosomal protein S15; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_O 1p87_O 2ykr_O 3oar_O 3oaq_O 3ofb_O 3ofa_O 3ofp_O 3ofx_O 3ofy_O 3ofo_O 3r8o_O 3i1m_O 2qan_O* 2qb9_O* 2qbb_O* 2qbd_O 2qbf_O 2qbh_O* 2qbj_O* ...
Probab=99.97 E-value=6.3e-31 Score=228.30 Aligned_cols=85 Identities=24% Similarity=0.303 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHhhcCCCCCCCHhHHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Q psy5134 460 VELVKKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLD 539 (648)
Q Consensus 460 ~k~~k~~~i~~f~r~~~DtGS~EVQIA~LT~rIr~L~eHl~~~~KD~~~kr~L~~li~kRrKlLkYLrr~d~~~y~~li~ 539 (648)
++.+|+++|++|++|++||||+|||||+||+||++|++||+.||||++++|||++||++|+|||+||+++|+++|.++|+
T Consensus 3 ~~~~K~~ii~~~~~~~~DtGS~EvQiA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YL~~~d~~rY~~li~ 82 (88)
T 3r8n_O 3 STEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTQLIE 82 (88)
T ss_dssp CHHHHHHHHHHHSSSTTCTTCHHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCcccchhhHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCc
Q psy5134 540 ELKIV 544 (648)
Q Consensus 540 ~LgL~ 544 (648)
+|||+
T Consensus 83 ~Lglr 87 (88)
T 3r8n_O 83 RLGLR 87 (88)
T ss_dssp HHTCC
T ss_pred HhCCC
Confidence 99997
No 3
>2vqe_O 30S ribosomal protein S15; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1eg0_F* 1gix_R* 1hnw_O* 1hnx_O* 1hnz_O* 1hr0_O 1ibk_O* 1ibl_O* 1ibm_O 1jgo_R* 1jgp_R* 1jgq_R* 1ml5_R* 1xmo_O* 1xmq_O* 1xnq_O* 1xnr_O* 1yl4_R 2b64_O* 2b9m_O* ...
Probab=99.97 E-value=6.1e-31 Score=228.94 Aligned_cols=85 Identities=27% Similarity=0.346 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHhhcCCCCCCCHhHHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Q psy5134 460 VELVKKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLD 539 (648)
Q Consensus 460 ~k~~k~~~i~~f~r~~~DtGS~EVQIA~LT~rIr~L~eHl~~~~KD~~~kr~L~~li~kRrKlLkYLrr~d~~~y~~li~ 539 (648)
++++|+++|++|++|++||||+|||||+||+||++|++|++.||||++++|||++||++|+|||+||+++|+++|+++|+
T Consensus 4 ~~~~K~~ii~~~~~~~~DTGS~EvQIA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YLk~~d~~rY~~li~ 83 (89)
T 2vqe_O 4 TKEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRRLLRYLQREDPERYRALIE 83 (89)
T ss_dssp CHHHHHHHHHTTCSSTTCCSSHHHHHHHHHHHHHHHHHHTTSSTTCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCcccccchhHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCc
Q psy5134 540 ELKIV 544 (648)
Q Consensus 540 ~LgL~ 544 (648)
+|||+
T Consensus 84 ~Lglr 88 (89)
T 2vqe_O 84 KLGIR 88 (89)
T ss_dssp HHTCC
T ss_pred HhCCC
Confidence 99997
No 4
>4a5u_B 30S ribosomal protein S15; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Escherichia coli} PDB: 1p6g_O 1p87_O 2ykr_O* 3j18_O 3oar_O 3oaq_O 3ofb_O 3ofa_O 3ofp_O 3ofx_O 3ofy_O 3ofo_O 3r8o_O 3r8n_O 4gd1_O 4gd2_O 3i1m_O 2qan_O* 2qb9_O* 2qbb_O* ...
Probab=99.97 E-value=6.9e-31 Score=228.07 Aligned_cols=85 Identities=24% Similarity=0.303 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHhhcCCCCCCCHhHHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Q psy5134 460 VELVKKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLD 539 (648)
Q Consensus 460 ~k~~k~~~i~~f~r~~~DtGS~EVQIA~LT~rIr~L~eHl~~~~KD~~~kr~L~~li~kRrKlLkYLrr~d~~~y~~li~ 539 (648)
++++|+++|++|++|++||||+|||||+||+||++|++||+.||||++++|||++||++|+|||+||+++|+++|.++|+
T Consensus 3 ~~~~K~~ii~~~~~~~~DTGS~EvQiA~LT~rI~~L~~Hlk~hkKD~~srRgL~~lv~kRrrLL~YLk~~d~~rY~~li~ 82 (88)
T 4a5u_B 3 STEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTQLIE 82 (88)
T ss_dssp CHHHHHHHHHHHSSSTTCTTCHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCc
Q psy5134 540 ELKIV 544 (648)
Q Consensus 540 ~LgL~ 544 (648)
+|||+
T Consensus 83 ~LglR 87 (88)
T 4a5u_B 83 RLGLR 87 (88)
T ss_dssp HTTTT
T ss_pred HhCCC
Confidence 99997
No 5
>3ulw_A 30S ribosomal protein S15; structural genomics, IDP90515, CE structural genomics of infectious diseases, csgid, rRNA BIN translation; 2.36A {Campylobacter jejuni}
Probab=99.96 E-value=1.1e-30 Score=228.85 Aligned_cols=87 Identities=25% Similarity=0.306 Sum_probs=83.4
Q ss_pred HhHHHHHHHHHHhhcCCCCCCCHhHHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Q psy5134 459 AVELVKKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLL 538 (648)
Q Consensus 459 ~~k~~k~~~i~~f~r~~~DtGS~EVQIA~LT~rIr~L~eHl~~~~KD~~~kr~L~~li~kRrKlLkYLrr~d~~~y~~li 538 (648)
+.+++|+++|++|++|++||||+|||||+||+||++|++||+.||||++++|||+++|++|+|||+||+++|+++|+++|
T Consensus 6 l~~~~K~~ii~~~~~~~~DTGS~EVQIA~LT~rI~~L~~Hlk~hkKD~~srRgL~~lv~kRrrLL~YLk~~d~~rY~~li 85 (93)
T 3ulw_A 6 LDSAKKAEIVAKFAKKPGDTGSTEVQVALLTARIAELTEHLKIYKKDFSSRLGLLKLVGQRKRLLSYLKRKDYNSYSKLI 85 (93)
T ss_dssp CCHHHHHHHHHHHCSSTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcc
Q psy5134 539 DELKIVF 545 (648)
Q Consensus 539 ~~LgL~y 545 (648)
++|||+.
T Consensus 86 ~~LgLr~ 92 (93)
T 3ulw_A 86 TELNLRD 92 (93)
T ss_dssp HHTTC--
T ss_pred HHhCCCC
Confidence 9999984
No 6
>3bbn_O Ribosomal protein S15; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.94 E-value=2.5e-28 Score=212.46 Aligned_cols=82 Identities=22% Similarity=0.259 Sum_probs=76.6
Q ss_pred HHHHHHHh--hcCCCCCCCHhHHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHc
Q psy5134 464 KKKHVDSV--KRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLDEL 541 (648)
Q Consensus 464 k~~~i~~f--~r~~~DtGS~EVQIA~LT~rIr~L~eHl~~~~KD~~~kr~L~~li~kRrKlLkYLrr~d~~~y~~li~~L 541 (648)
+..+|..+ ++|++||||+|||||+||+||++|++|++.||||++++|||++||++|+|||+||+++|+++|.++|++|
T Consensus 3 k~~~i~~~s~~r~~~DTGS~EVQIA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YLk~kd~~rY~~li~~L 82 (90)
T 3bbn_O 3 KNSFISVISDEKKEENKGSVEFQVFCFTNKIRRLTLHLELHKKDYSSQRGLRKTLGKRQRLLAYLLKINGVRYKELISKL 82 (90)
T ss_dssp HHHHHHHHHHSCCSSSSCSTTHHHHHHHHHHTTTTTTTTTCTTCSTTSHHHHHHHHHHHHHHTTHHHHCSHHHHTTTTTT
T ss_pred cccchhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 34445544 6899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcc
Q psy5134 542 KIVF 545 (648)
Q Consensus 542 gL~y 545 (648)
||+.
T Consensus 83 gLr~ 86 (90)
T 3bbn_O 83 NIRE 86 (90)
T ss_dssp TCCC
T ss_pred CCCC
Confidence 9997
No 7
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.28 E-value=3.3e-12 Score=121.05 Aligned_cols=97 Identities=10% Similarity=-0.012 Sum_probs=76.8
Q ss_pred CCCCCCchhhhhChhhhhhHHHHHHHhcccCCCChhhHhHHHHHHHHHHhhcCCCCCCCHhHHHHHHHHHHHHHHHHhhh
Q psy5134 422 PLELDKPTLEYAKCESLKSADEHVKKIFSCAHRGRKQAVELVKKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKA 501 (648)
Q Consensus 422 ~l~~s~~~~~y~~~~ele~a~e~VkrilSLe~as~ke~~k~~k~~~i~~f~r~~~DtGS~EVQIA~LT~rIr~L~eHl~~ 501 (648)
+.+||++-...+|.- --+.||-+.+..|++. -.+..+++++-+-.|. ..-|+..||+||.+|++||+.
T Consensus 44 G~~pSqIG~~LRD~~----gip~Vk~vt~~~~~~~----G~ki~~iLk~~gl~p~----iPEDL~~Lt~RI~~Lt~HLk~ 111 (158)
T 3j20_Q 44 GYSTAMIGTILRDQY----GIPSVKLFKDPDNPNR----NLTITRILEKHGLAPE----IPEDLMFLIRRAVNLRKHLEQ 111 (158)
T ss_dssp TCCHHHHHHHHHHTT----CCSCHHHHHCSSSTTS----CCCTHHHHHHHTCSCS----SCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHhhHHHhccC----CCCCeeeccccccccC----cCcHHHHHHHcCCCCC----CHHHHHHHHHHHHHHHHHHHh
Confidence 566666666555552 2357889999999883 2234666666655433 344899999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHhhC
Q psy5134 502 KPLDKRAKVWLKELIDKRNKHLRLLRTEN 530 (648)
Q Consensus 502 ~~KD~~~kr~L~~li~kRrKlLkYLrr~d 530 (648)
|+||++++|+|+++++||+|||+||+++|
T Consensus 112 hkKD~hSrRgL~~lv~kRrrLL~YLk~kd 140 (158)
T 3j20_Q 112 HPKDLHSMRGLQLIESKIRRLVKYYKRKG 140 (158)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999998
No 8
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=96.94 E-value=0.001 Score=62.76 Aligned_cols=46 Identities=22% Similarity=0.185 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHHHHHHHHHHHHhhC
Q psy5134 485 ITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTEN 530 (648)
Q Consensus 485 IA~LT~rIr~L~eHl~~~~KD~~~kr~L~~li~kRrKlLkYLrr~d 530 (648)
.-.|-.|.-++++||+.|+||+++||+|...-+|.+||.+|.++++
T Consensus 88 L~~LikKAv~lrkHLe~n~kD~~sK~~L~liESkI~RL~rYYk~~~ 133 (151)
T 3u5c_N 88 LYYLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRLARYYRTVA 133 (151)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5667789999999999999999999999999999999999999874
No 9
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=95.53 E-value=0.018 Score=54.52 Aligned_cols=46 Identities=15% Similarity=0.137 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHHHHHHHHHHHHhhC
Q psy5134 485 ITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTEN 530 (648)
Q Consensus 485 IA~LT~rIr~L~eHl~~~~KD~~~kr~L~~li~kRrKlLkYLrr~d 530 (648)
.-.|-.|--++.+||+.|+||+++|++|...-++=+||-+|.++++
T Consensus 90 L~~LikKAv~lRkHLe~n~kD~~sK~~L~LiESkI~RL~rYYk~~~ 135 (153)
T 2xzm_O 90 LYFLIKKALSIRKHLEKNRKDKDSKYRLILVESRIHRLSRYYKLNQ 135 (153)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 5566677788999999999999999999999999999999999864
No 10
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae}
Probab=56.02 E-value=10 Score=36.86 Aligned_cols=24 Identities=13% Similarity=0.264 Sum_probs=20.8
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHH
Q psy5134 605 QEKKYGKEPTVTKEEIESIWKKYE 628 (648)
Q Consensus 605 ee~~~~~~~tvt~~~i~~~~k~~~ 628 (648)
-|++||+=|+||+|||+++=+++-
T Consensus 107 Fe~~cGVGV~VT~EqI~~~V~~~i 130 (187)
T 3tl4_X 107 MNENSGVGIEITEDQVRNYVMQYI 130 (187)
T ss_dssp HHHTTTTTCCCCHHHHHHHHHHHH
T ss_pred HHHHCCCCeEeCHHHHHHHHHHHH
Confidence 588999999999999998766654
No 11
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=45.57 E-value=1.5e+02 Score=25.51 Aligned_cols=59 Identities=20% Similarity=0.289 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Q psy5134 555 VHRKESLRFLVDKHIGDVKTERLTQLRNKFNQEKINFYKKKAEFLEWTMEQEKKYGKEPTVTKEEIESIWKKYEELAEK 633 (648)
Q Consensus 555 ~tRk~~lr~lt~~~C~~~~~~kL~~~~~~l~~~~~~f~~ek~~~l~~i~~ee~~~~~~~tvt~~~i~~~~k~~~~~~~~ 633 (648)
+.++++++ -+.|..+--.++|.++|+++ .++++|-++.++.| +++|+..++++.+|+..
T Consensus 22 FgKrEaA~--Ee~YfrqkekEqL~~LKkkl-~~el~~h~~ei~~l-----------------e~~i~rhk~~i~~l~~~ 80 (84)
T 1gmj_A 22 FGKREQAE--EERYFRARAKEQLAALKKHK-ENEISHHAKEIERL-----------------QKEIERHKQSIKKLKQS 80 (84)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHH
T ss_pred cccHHHHh--HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHhhhc
Confidence 45555554 13466667777888888877 33444444444333 45677888888887664
No 12
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=44.34 E-value=17 Score=28.87 Aligned_cols=14 Identities=36% Similarity=0.548 Sum_probs=11.9
Q ss_pred hCCCCCCCHHHHHHHHHH
Q psy5134 609 YGKEPTVTKEEIESIWKK 626 (648)
Q Consensus 609 ~~~~~tvt~~~i~~~~k~ 626 (648)
.|+ |++||+.+.++
T Consensus 40 KGL----t~~EI~~Al~r 53 (54)
T 3ff5_A 40 KGL----TDEEIDLAFQQ 53 (54)
T ss_dssp TTC----CHHHHHHHHHH
T ss_pred cCC----CHHHHHHHHHc
Confidence 488 99999998765
No 13
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=31.16 E-value=36 Score=28.29 Aligned_cols=16 Identities=38% Similarity=0.522 Sum_probs=13.8
Q ss_pred HhCCCCCCCHHHHHHHHHHH
Q psy5134 608 KYGKEPTVTKEEIESIWKKY 627 (648)
Q Consensus 608 ~~~~~~tvt~~~i~~~~k~~ 627 (648)
..|| |++||+.+.+++
T Consensus 44 sKGL----t~eEI~~Al~ra 59 (70)
T 2w84_A 44 KKGL----TDEEIDMAFQQS 59 (70)
T ss_dssp HTTC----CHHHHHHHHHHH
T ss_pred HcCC----CHHHHHHHHHHc
Confidence 3688 999999999886
No 14
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=22.87 E-value=1.9e+02 Score=25.22 Aligned_cols=57 Identities=12% Similarity=0.219 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Q psy5134 574 TERLTQLRNKFNQEKINFYKKKAEFLEWTMEQEKKYGKEPTVTKEEIESIWKKYEELAEK 633 (648)
Q Consensus 574 ~~kL~~~~~~l~~~~~~f~~ek~~~l~~i~~ee~~~~~~~tvt~~~i~~~~k~~~~~~~~ 633 (648)
+.|++++.++++++... ++-.++|.-.=.+--.+|-|-+| +.++.++.++++-|+.-
T Consensus 21 ~~Ki~el~~ei~ke~~~--regl~Km~~vY~~nP~~GD~~s~-~~~L~e~~~kid~L~~e 77 (98)
T 2ke4_A 21 QQQLEERSRELQKEVDQ--REALKKMKDVYEKTPQMGDPASL-EPQIAETLSNIERLKLE 77 (98)
T ss_dssp HHHHHHHHHHHHHHHHH--HTHHHHHHHHHHHCGGGCCGGGS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHcCCccCCHHHH-HHHHHHHHHHHHHHHHH
Confidence 36888888888877766 88888888888888899988888 88999999998887654
No 15
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=21.49 E-value=1.4e+02 Score=30.04 Aligned_cols=47 Identities=11% Similarity=0.051 Sum_probs=40.6
Q ss_pred ChhhHHHHHHHHHHHHHcCCcEEEEcCcCCHHHHHHH-HHcCceEeec
Q psy5134 194 SIAAKYQFVLLLLLKIEYDCEILIYDPIFNELELELI-EIFKLELIIQ 240 (648)
Q Consensus 194 s~~AryQLAlLL~L~e~l~i~v~iyDPvFt~~D~~~L-~~LG~~Vl~e 240 (648)
..++--||+-+...++.-++++.|++|-|++.-.+.| +..|..++.-
T Consensus 219 ~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~~~g~~v~~l 266 (291)
T 1pq4_A 219 QEPSAQELKQLIDTAKENNLTMVFGETQFSTKSSEAIAAEIGAGVELL 266 (291)
T ss_dssp BCCCHHHHHHHHHHHHTTTCCEEEEETTSCCHHHHHHHHHHTCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCeEEEE
Confidence 5678889999999999999999999999998877777 6789888654
No 16
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=20.75 E-value=34 Score=32.52 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHcCCccc
Q psy5134 513 KELIDKRNKHLRLLRTENYKVFEWLLDELKIVFR 546 (648)
Q Consensus 513 ~~li~kRrKlLkYLrr~d~~~y~~li~~LgL~y~ 546 (648)
.++.++|+++|.||+ .+...=..+.++|||.|-
T Consensus 7 d~v~erk~~ILE~Lk-~G~~~t~~Iak~LGlShg 39 (165)
T 2vxz_A 7 REVLVRLRDILALLA-DGCKTTSLIQQRLGLSHG 39 (165)
T ss_dssp HHHHHHHHHHHHHHT-TCCEEHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHH-hCCccHHHHHHHhCCcHH
Confidence 367899999999999 777777789999999875
No 17
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=20.34 E-value=1.7e+02 Score=28.19 Aligned_cols=54 Identities=20% Similarity=0.348 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhCCC-C-CCCHHHHHHHHHHHHHHHH
Q psy5134 572 VKTERLTQLRNKFNQEKINFYKKKAEFLEWTMEQEKKYGKE-P-TVTKEEIESIWKKYEELAE 632 (648)
Q Consensus 572 ~~~~kL~~~~~~l~~~~~~f~~ek~~~l~~i~~ee~~~~~~-~-tvt~~~i~~~~k~~~~~~~ 632 (648)
.|++||+.+ -..|..+-.+...||.+-|..+.-+ + .-+.+.|+...|+.+.+..
T Consensus 7 ~R~~kLe~l-------~~~F~~~~~e~~~Wl~e~e~~l~~~~~~g~dl~~v~~llkkh~~~~~ 62 (250)
T 1quu_A 7 RRLERLEHL-------AEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFES 62 (250)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHTTTHHHHHHCCCCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHhHHHhcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 588999988 2589999999999999999888743 3 3477888888888877665
Done!