Query psy5134
Match_columns 648
No_of_seqs 421 out of 1409
Neff 4.9
Searched_HMMs 13730
Date Fri Aug 16 18:13:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5134.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5134hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kuqa_ a.16.1.2 (A:) Ribosoma 100.0 1E-30 7.4E-35 223.5 10.1 83 461-543 2-84 (84)
2 d1a32a_ a.16.1.2 (A:) Ribosoma 100.0 1.6E-30 1.2E-34 222.8 11.4 84 460-543 2-85 (85)
3 d1vs5o1 a.16.1.2 (O:1-88) Ribo 100.0 1.8E-30 1.3E-34 223.6 10.7 86 459-544 2-87 (88)
4 d1pjqa1 c.2.1.11 (A:1-113) Sir 32.0 44 0.0032 26.6 6.4 79 180-269 12-90 (113)
5 d1cuna2 a.7.1.1 (A:116-219) Sp 28.6 70 0.0051 24.4 7.0 44 590-633 1-45 (104)
6 d1quua1 a.7.1.1 (A:1-124) alph 23.9 84 0.0061 24.7 6.8 45 589-633 17-63 (124)
7 d1mv8a3 c.26.3.1 (A:301-436) G 21.9 45 0.0033 27.5 4.7 44 179-225 12-59 (136)
8 d1pq4a_ c.92.2.2 (A:) Periplas 21.3 70 0.0051 29.7 6.5 56 186-242 212-268 (289)
9 d1u5pa2 a.7.1.1 (A:1772-1872) 21.2 1.2E+02 0.0088 22.6 7.0 43 590-632 2-45 (101)
10 d1eh1a_ d.67.3.1 (A:) Ribosome 19.5 2.6E+02 0.019 24.4 9.8 60 555-633 108-167 (185)
No 1
>d1kuqa_ a.16.1.2 (A:) Ribosomal protein S15 {Thermus thermophilus [TaxId: 274]}
Probab=99.96 E-value=1e-30 Score=223.52 Aligned_cols=83 Identities=28% Similarity=0.362 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhhcCCCCCCCHhHHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Q psy5134 461 ELVKKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLDE 540 (648)
Q Consensus 461 k~~k~~~i~~f~r~~~DtGS~EVQIA~LT~rIr~L~eHl~~~~KD~~~kr~L~~li~kRrKlLkYLrr~d~~~y~~li~~ 540 (648)
+..|+++|++||+||.||||+|||||+||+||++|++||+.||||++++|||.+||++|+|+|+||+++|+++|.++|++
T Consensus 2 k~~K~~ii~~~~~~~~DtGS~evQiA~lT~rI~~L~~Hlk~~kkD~~s~rgL~~lv~kRkklL~YLrk~d~~~Y~~li~~ 81 (84)
T d1kuqa_ 2 KEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRRLLRYLQREDPERYRALIEK 81 (84)
T ss_dssp TTHHHHHHHHHCSSTTCCSSHHHHHHHHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred cHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q psy5134 541 LKI 543 (648)
Q Consensus 541 LgL 543 (648)
|||
T Consensus 82 LgL 84 (84)
T d1kuqa_ 82 LGI 84 (84)
T ss_dssp TCC
T ss_pred cCC
Confidence 997
No 2
>d1a32a_ a.16.1.2 (A:) Ribosomal protein S15 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.96 E-value=1.6e-30 Score=222.78 Aligned_cols=84 Identities=25% Similarity=0.384 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHhhcCCCCCCCHhHHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Q psy5134 460 VELVKKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLD 539 (648)
Q Consensus 460 ~k~~k~~~i~~f~r~~~DtGS~EVQIA~LT~rIr~L~eHl~~~~KD~~~kr~L~~li~kRrKlLkYLrr~d~~~y~~li~ 539 (648)
++.+|+++|++||+||.||||+|||||+||+||++|++||+.||||++++|||.+||++|+|+|+||+++|+++|+++|+
T Consensus 2 ~~~~K~~~i~~~~~~~~DtGS~evQiA~lT~rI~~L~~Hlk~~kkD~~srrgL~~lv~~RrklL~YLrk~d~~~Y~~~i~ 81 (85)
T d1a32a_ 2 TQERKREIIEQFKVHENDTGSPEVQIAILTEQINNLNEHLRVHKKDHHSRRGLLKMVGKRRRLLAYLRNKDVARYREIVE 81 (85)
T ss_dssp CHHHHHHHHHHTCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCCCCCCHHHHHHhhHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCC
Q psy5134 540 ELKI 543 (648)
Q Consensus 540 ~LgL 543 (648)
+|||
T Consensus 82 ~Lgl 85 (85)
T d1a32a_ 82 KLGL 85 (85)
T ss_dssp HHTC
T ss_pred HcCC
Confidence 9997
No 3
>d1vs5o1 a.16.1.2 (O:1-88) Ribosomal protein S15 {Escherichia coli [TaxId: 562]}
Probab=99.96 E-value=1.8e-30 Score=223.60 Aligned_cols=86 Identities=23% Similarity=0.299 Sum_probs=83.7
Q ss_pred HhHHHHHHHHHHhhcCCCCCCCHhHHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Q psy5134 459 AVELVKKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLL 538 (648)
Q Consensus 459 ~~k~~k~~~i~~f~r~~~DtGS~EVQIA~LT~rIr~L~eHl~~~~KD~~~kr~L~~li~kRrKlLkYLrr~d~~~y~~li 538 (648)
+++..++++|++||+||.||||+|||||+||+||++|++||+.||||++++|||.++|++|+|+|+||+++|+++|.++|
T Consensus 2 l~~~~k~~ii~~~~~~~~DtGS~evQiA~lT~rI~~Lt~Hl~~~kKD~~s~rgL~~lv~kRkklL~YL~~~d~~~Y~~vi 81 (88)
T d1vs5o1 2 LSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTRLI 81 (88)
T ss_dssp CCHHHHHHHHHHHCSSSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCCCTTHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCc
Q psy5134 539 DELKIV 544 (648)
Q Consensus 539 ~~LgL~ 544 (648)
++|||+
T Consensus 82 ~~LgLr 87 (88)
T d1vs5o1 82 ERLGLR 87 (88)
T ss_dssp TTTTCC
T ss_pred HHhCCC
Confidence 999997
No 4
>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}
Probab=32.00 E-value=44 Score=26.60 Aligned_cols=79 Identities=10% Similarity=-0.065 Sum_probs=52.0
Q ss_pred cceEEEEecCCCCCChhhHHHHHHHHHHHHHcCCcEEEEcCcCCHHHHHHHHHcCceEeecCcccccccCCCceEEEccC
Q psy5134 180 INQIICYGIGNFTDSIAAKYQFVLLLLLKIEYDCEILIYDPIFNELELELIEIFKLELIIQNEECKHTITHAKTLVYMPR 259 (648)
Q Consensus 180 i~~IVCLGLGSfs~s~~AryQLAlLL~L~e~l~i~v~iyDPvFt~~D~~~L~~LG~~Vl~ene~g~~~~~~~~TLfymPH 259 (648)
-.+|+++|.|.....+ +. .....+..|.+++|.+++.-..+...-+++++...-...+.. ...+++...
T Consensus 12 ~k~vlVvG~G~va~~k--------a~-~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~--~~~lv~~at 80 (113)
T d1pjqa1 12 DRDCLIVGGGDVAERK--------AR-LLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLD--SCWLAIAAT 80 (113)
T ss_dssp TCEEEEECCSHHHHHH--------HH-HHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGT--TCSEEEECC
T ss_pred CCEEEEECCCHHHHHH--------HH-HHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHhC--CCcEEeecC
Confidence 4799999999743221 11 122357789999999999999988887888886544333322 255677766
Q ss_pred CCHHHHHHHH
Q psy5134 260 CPIQLINNIL 269 (648)
Q Consensus 260 cp~~Ly~nlL 269 (648)
....+-+.+.
T Consensus 81 ~d~~~n~~i~ 90 (113)
T d1pjqa1 81 DDDTVNQRVS 90 (113)
T ss_dssp SCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 6666644443
No 5
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=28.64 E-value=70 Score=24.45 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHHHHHH
Q psy5134 590 NFYKKKAEFLEWTMEQEKKYG-KEPTVTKEEIESIWKKYEELAEK 633 (648)
Q Consensus 590 ~f~~ek~~~l~~i~~ee~~~~-~~~tvt~~~i~~~~k~~~~~~~~ 633 (648)
.|+++-.+.+.||.+-+.-+. -++.-+.+.++...++.++++..
T Consensus 1 qF~~~~~e~~~Wl~e~~~~l~~~~~g~d~~~v~~ll~~h~~~~~e 45 (104)
T d1cuna2 1 QFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETD 45 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 599999999999999998886 44556677777777777776653
No 6
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.85 E-value=84 Score=24.71 Aligned_cols=45 Identities=16% Similarity=0.283 Sum_probs=36.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHH
Q psy5134 589 INFYKKKAEFLEWTMEQEKKYG--KEPTVTKEEIESIWKKYEELAEK 633 (648)
Q Consensus 589 ~~f~~ek~~~l~~i~~ee~~~~--~~~tvt~~~i~~~~k~~~~~~~~ 633 (648)
..|..+-.+.+.|+.+-|..+- -++.-+.+.|++..++.+++...
T Consensus 17 q~F~~~~~~l~~Wl~~~e~~l~~~~~~~~d~~~v~~l~~~h~~~~~~ 63 (124)
T d1quua1 17 EKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESD 63 (124)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHCCCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3699999999999999888774 34677889999998888887653
No 7
>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=21.86 E-value=45 Score=27.53 Aligned_cols=44 Identities=14% Similarity=0.136 Sum_probs=27.3
Q ss_pred CcceEEEEecCCCCC----ChhhHHHHHHHHHHHHHcCCcEEEEcCcCCHH
Q psy5134 179 GINQIICYGIGNFTD----SIAAKYQFVLLLLLKIEYDCEILIYDPIFNEL 225 (648)
Q Consensus 179 ~i~~IVCLGLGSfs~----s~~AryQLAlLL~L~e~l~i~v~iyDPvFt~~ 225 (648)
...+|.+||+.==.. ..++-+.++-.| ...+.+|.+|||..+..
T Consensus 12 ~~kkI~ilGlafK~~t~D~R~Sps~~li~~L---~~~g~~V~~~DP~v~~~ 59 (136)
T d1mv8a3 12 DTRKVGLLGLSFKAGTDDLRESPLVELAEML---IGKGYELRIFDRNVEYA 59 (136)
T ss_dssp SCCEEEEECCSSSTTCCCCTTCHHHHHHHHH---HHTTCEEEEECHHHHHH
T ss_pred CCCEEEEEEEEECCCCcchhcCHHHHHHHHH---hhhhccccccCCCCCHH
Confidence 357999999953322 234444444333 23467999999987654
No 8
>d1pq4a_ c.92.2.2 (A:) Periplasmic zinc binding protein ZnuA {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=21.33 E-value=70 Score=29.67 Aligned_cols=56 Identities=11% Similarity=0.016 Sum_probs=42.7
Q ss_pred EecCCCCCChhhHHHHHHHHHHHHHcCCcEEEEcCcCCHHHHHHH-HHcCceEeecCc
Q psy5134 186 YGIGNFTDSIAAKYQFVLLLLLKIEYDCEILIYDPIFNELELELI-EIFKLELIIQNE 242 (648)
Q Consensus 186 LGLGSfs~s~~AryQLAlLL~L~e~l~i~v~iyDPvFt~~D~~~L-~~LG~~Vl~ene 242 (648)
+|+-+.. ..++--|++-+...++.-++.|.|++|.++..-.+.| +.+|+.|+.-++
T Consensus 212 ~~~~~~~-~eps~~~l~~l~~~ik~~~i~~if~e~q~~~~~~~~la~~~gv~v~~ldp 268 (289)
T d1pq4a_ 212 IPIEVEG-QEPSAQELKQLIDTAKENNLTMVFGETQFSTKSSEAIAAEIGAGVELLDP 268 (289)
T ss_dssp EESCBTT-BCCCHHHHHHHHHHHHTTTCCEEEEETTSCCHHHHHHHHHHTCEEEEECT
T ss_pred eeeeccC-CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHcCCCEEEECC
Confidence 3444333 3456668999999998899999999999999887766 678998876444
No 9
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=21.21 E-value=1.2e+02 Score=22.63 Aligned_cols=43 Identities=14% Similarity=0.268 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHHHHH
Q psy5134 590 NFYKKKAEFLEWTMEQEKKYGK-EPTVTKEEIESIWKKYEELAE 632 (648)
Q Consensus 590 ~f~~ek~~~l~~i~~ee~~~~~-~~tvt~~~i~~~~k~~~~~~~ 632 (648)
.|+.+-.+.+.||.+-|.-+.- ++.-+-+.++...++.+.++.
T Consensus 2 ~F~~~~~el~~Wl~e~~~~l~s~~~g~d~~~~~~ll~~h~~~~~ 45 (101)
T d1u5pa2 2 QFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEA 45 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 5999999999999999988864 444456667776666666544
No 10
>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus thermophilus [TaxId: 274]}
Probab=19.55 E-value=2.6e+02 Score=24.40 Aligned_cols=60 Identities=10% Similarity=0.147 Sum_probs=34.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Q psy5134 555 VHRKESLRFLVDKHIGDVKTERLTQLRNKFNQEKINFYKKKAEFLEWTMEQEKKYGKEPTVTKEEIESIWKKYEELAEK 633 (648)
Q Consensus 555 ~tRk~~lr~lt~~~C~~~~~~kL~~~~~~l~~~~~~f~~ek~~~l~~i~~ee~~~~~~~tvt~~~i~~~~k~~~~~~~~ 633 (648)
-.||..+-++.++.|++-|. .++.-|.... .-|++.+++.++ ++.+...+.++++.+..+
T Consensus 108 ~E~R~elvK~~k~~~E~akv-~iR~iR~~~~--------------~~ikk~~k~~~i----seD~~k~~~~eiq~ltd~ 167 (185)
T d1eh1a_ 108 EERRKDLVRAVRQYAEEGRV-AIRNIRREAL--------------DKLKKLAKELHL----SEDETKRAEAEIQKITDE 167 (185)
T ss_dssp TTHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--------------HHHHHHHHHHTC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--------------HHHHhhcccCCC----CHHHHHHHHHHHHHHHHH
Confidence 34555566677777877665 3333333222 223455566666 777777777777666554
Done!