RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5134
(648 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.7 bits (126), Expect = 4e-07
Identities = 86/583 (14%), Positives = 157/583 (26%), Gaps = 245/583 (42%)
Query: 95 LTPVMLAMVMMVHLHVTTSIFNSMMHVYNELNIPTSWHI----LKCSFSIFRRIESVKEE 150
P+ L+ H + + +PT+ L+ F+ + + E
Sbjct: 6 TRPLTLS-----HGSLEHVL-----------LVPTASFFIASQLQEQFN--KILPEPTEG 47
Query: 151 LGSSDYYLQLINLISKSLNLSSANSTTQGINQIICYGIGNFTDSIAAKYQFVLLLLLKIE 210
+ D L+ K L S+ + Q + VL L L E
Sbjct: 48 FAADDEPTTPAELVGKFLGYVSSLVEPSKVGQ----------------FDQVLNLCLT-E 90
Query: 211 YDCEILIYDPIFNELELELIEIFKLELIIQNEECKHTITHAKTLVYMPRCPIQLINNIL- 269
++ L + I H + A L+ + ++
Sbjct: 91 FENCYLEGNDI------------------------HAL--AAKLLQENDTTLVKTKELIK 124
Query: 270 -YSNWTRENLSNLILLSNSISTVVDSNTDAFLKS----NLQF--LF----HIKEFLEEVP 318
Y ++ I+ +S A ++ N Q +F + ++ EE
Sbjct: 125 NY-------ITARIMAKRPFDKKSNS---ALFRAVGEGNAQLVAIFGGQGNTDDYFEE-- 172
Query: 319 VVNNFKFNDIFNDTSLHCFLPTKLNSIEQDIWDLRFLEPEYTECNFEKTKSGAFVSSLIK 378
L +D++ Y V LIK
Sbjct: 173 -----------------------L----RDLYQT------YH----------VLVGDLIK 189
Query: 379 VGAG----LGETNVCG---YKQLIKI-KW-----KRPE-------PVAFNDP-------- 410
A L T + + Q + I +W P+ P++ P
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC--PLIGVIQLA 247
Query: 411 ------RKSGDQILELGPLELDKPTLEYAKCESLKSADEHVKKIFSCAHRGRKQAVELVK 464
+ G P EL LK A H + + + A+
Sbjct: 248 HYVVTAKLLG-----FTPGEL---------RSYLKGATGHSQGLVTAV------AIA--- 284
Query: 465 KKHVDSVKRHDLDDTSREVLITKYTVSIRSLQ----------------EHHKAKP----- 503
DS + + R+ + + + +R + E+++ P
Sbjct: 285 --ETDSWE--SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 504 ---LDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLDELKIVFRPGPTILNKV---HR 557
L + +++ ++K N HL +V I G N V
Sbjct: 341 ISNLTQEQ---VQDYVNKTNSHLP----AGKQVE--------ISLVNGAK--NLVVSGPP 383
Query: 558 KESLRFLVDKHIGDVKTER-LTQLRNKFNQEKINFYKKKAEFL 599
+SL L + K L Q R F++ K+ F FL
Sbjct: 384 -QSLYGLN-LTLRKAKAPSGLDQSRIPFSERKLKFS---NRFL 421
Score = 49.7 bits (118), Expect = 3e-06
Identities = 97/616 (15%), Positives = 174/616 (28%), Gaps = 213/616 (34%)
Query: 49 LILLSNSISTVVDSNTDALCILALANVVKDKLKQKSIMCMTIRTTQ----LTPVMLAMVM 104
L L S+ V+ T +A+ ++++ K + T TP L
Sbjct: 9 LTLSHGSLEHVLLVPTA---SFFIASQLQEQF-NKILPEPTEGFAADDEPTTPAELVGKF 64
Query: 105 MVHLHVTTSIFNSMMHVYNELNIPTSWHILKCSFSIFRR-------IESVKEELGSSD-- 155
+ ++ + + +L + F I ++ +L +
Sbjct: 65 LGYV----------SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT 114
Query: 156 ----------YYLQLINLISKSLN--LSSA--NSTTQGINQIICYGI----GNFTDSIAA 197
Y+ + + + +SA + +G Q+ I GN D
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL--VAIFGGQGNTDD---- 168
Query: 198 KYQFVLLLLLKIEYDCEILIYDPIFNELELELIEIFKLELIIQNEECKHTITHAKTLV-- 255
Y F L L Y Y + +L E ELI + + T ++
Sbjct: 169 -Y-FEELRDL---YQ----TYHVLVGDLIKFSAETLS-ELIRTTLDAEKVFTQGLNILEW 218
Query: 256 -----------YMPRCPI--------QLINNILY------SNWTRENLSNLIL-LSNSIS 289
Y+ PI QL + Y +T L + + +
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIGVIQLAH---YVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 290 TVV------DSNT-DAFLKSN---LQFLFHI-KEFLEEVPVVNNFKFNDIFNDTSLHCFL 338
+V ++++ ++F S + LF I E P + L
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYP----------------NTSL 319
Query: 339 PTKLNSIEQDIWDLRFLEPEYTECNFEKTKSGAF-VSSLIK--VGAGLGETNVCGYKQLI 395
P SI +D + N E S +S+L + V + +TN L
Sbjct: 320 PP---SILEDSLE-----------NNEGVPSPMLSISNLTQEQVQDYVNKTN----SHL- 360
Query: 396 KIKWKRPEPVA---FNDPRK---SGDQILELGPLELDKPTLEYAKCESLKSADEHVKKIF 449
+ V N + S GP P +SL + ++K
Sbjct: 361 ----PAGKQVEISLVNGAKNLVVS-------GP-----P-------QSLYGLNLTLRKA- 396
Query: 450 SCAHRGRKQA-VELVKKK--------------H----VDSVKRHDLDDTSREVLITKYTV 490
A G Q+ + ++K H V + + D V
Sbjct: 397 -KAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA--- 452
Query: 491 SIRSLQE--HHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEW-LLDELK----I 543
+ +Q + D R L I +R + + V W + K +
Sbjct: 453 --KDIQIPVYDTFDGSDLRV---LSGSISER--IVDCIIRLP--VK-WETTTQFKATHIL 502
Query: 544 VFRPGPT--ILNKVHR 557
F PG + HR
Sbjct: 503 DFGPGGASGLGVLTHR 518
Score = 47.0 bits (111), Expect = 2e-05
Identities = 49/287 (17%), Positives = 83/287 (28%), Gaps = 108/287 (37%)
Query: 269 LYSN-------WTRENLSNLILLSNSISTVVDSNTDAFLKSNLQFLF------HIKE--- 312
LY W R + SI +V +N NL F I+E
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNP-----VNLTIHFGGEKGKRIRENYS 1689
Query: 313 -FLEEVPVVNNFKFNDIFND----TSLHCFLPTK--LNS----------IEQDIW-DLR- 353
+ E V K IF + ++ + F K L++ +E+ + DL+
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKS 1749
Query: 354 -FLEP-----------EYT--EC-----NFEKT-----KSGAFVSSLI------------ 377
L P EY + E G + +
Sbjct: 1750 KGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGM 1809
Query: 378 ------KVGAGLGETNVCGYKQLIKIKWKRP----EPVAFNDPRKSGDQILELGPLELDK 427
+V A + + + +++ KR E V +N Q + G D
Sbjct: 1810 IAINPGRVAASFSQEAL---QYVVERVGKRTGWLVEIVNYNVE---NQQYVAAG----DL 1859
Query: 428 PTLEYAKCESLKSADEHVKKIFSCAHRGRKQAVELVKKKHVDSVKRH 474
L+ L ++KI +EL K ++ V+ H
Sbjct: 1860 RALDTV-TNVLNFI--KLQKI---------DIIELQKSLSLEEVEGH 1894
Score = 43.5 bits (102), Expect = 3e-04
Identities = 47/250 (18%), Positives = 82/250 (32%), Gaps = 89/250 (35%)
Query: 43 RENLSNLILLSNSISTVVDSNTDALCILALANVV---------KDKLKQKSIMCMTIRTT 93
REN S +I T+VD I N K L T
Sbjct: 1685 RENYSAMIF-----ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA----------T 1729
Query: 94 QLT-PVMLAMVMMVHLHVTTSIFNSMMHVYNELNIPTSW----H-------------ILK 135
Q T P + M + F + ++ IP H ++
Sbjct: 1730 QFTQPALTLMEK--------AAFEDLK---SKGLIPADATFAGHSLGEYAALASLADVM- 1777
Query: 136 CSFS-----IFRRIESVKE-----ELGSSDYYLQLIN--LISKSLNLSSANSTTQGINQI 183
S +F R +++ ELG S+Y + IN ++ S + + Q
Sbjct: 1778 -SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEAL--------QY 1828
Query: 184 ICYGIGNFTDSI--AAKY-----QFVLLLLLK-IEYDCEILIYDPIFNELELELIEIFKL 235
+ +G T + Y Q+V L+ ++ +L N ++L+ I+I +L
Sbjct: 1829 VVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVL------NFIKLQKIDIIEL 1882
Query: 236 ELIIQNEECK 245
+ + EE +
Sbjct: 1883 QKSLSLEEVE 1892
Score = 36.6 bits (84), Expect = 0.029
Identities = 36/244 (14%), Positives = 69/244 (28%), Gaps = 94/244 (38%)
Query: 417 ILELGPLE--LDKPTLEYAKCESLKSADEHVKKIFSCAHRGRKQAVELVKKKHVDSVKRH 474
L G LE L PT + L+ ++ K + + +
Sbjct: 10 TLSHGSLEHVLLVPTASFFIASQLQ--EQFNKIL----------------PEPTEGFAAD 51
Query: 475 DLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKEL------------------- 515
D + T+ L+ K+ + SL E K D+ + L E
Sbjct: 52 D-EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ 110
Query: 516 -----IDKRNKHLR--------------------LLRTEN------YKVF------EWLL 538
+ K + ++ L R +F +
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF 170
Query: 539 DELKIVFRPGPTILNKVHRKESLRFLVDKHIGDVKTERLTQL-RNKFNQEKINFYKKKAE 597
+EL+ +++ + + L+ E L++L R + EK + +
Sbjct: 171 EELRDLYQTYHVL---------VGDLIKFS-----AETLSELIRTTLDAEK--VFTQGLN 214
Query: 598 FLEW 601
LEW
Sbjct: 215 ILEW 218
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.2 bits (124), Expect = 5e-07
Identities = 83/514 (16%), Positives = 157/514 (30%), Gaps = 154/514 (29%)
Query: 223 NELEL---ELIEIFKLELIIQNEECKHTITHAKTLVYMPRCPIQLINNILYSNWTRENLS 279
E + +++ +F + + N +CK K+++ ++I+ S
Sbjct: 12 GEHQYQYKDILSVF-EDAFVDNFDCKDVQDMPKSILSKEEI-----DHIIMSKDAVSGTL 65
Query: 280 NLI-LLSNSISTVVDSNTDAFLKSNLQFLFH-IKEFLEEVPVVNNFKFND----IFNDTS 333
L L + +V + L+ N +FL IK + P + + + ++ND
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ-PSMMTRMYIEQRDRLYNDNQ 124
Query: 334 LHCFLPTKLN-SIEQDIWDLRFLEPEYTECNFEKTKSGAFVSSLIKVG-AGLGET----N 387
+ K N S Q LR + + + V + G G G+T +
Sbjct: 125 VF----AKYNVSRLQPYLKLR-------QA-LLELRPAKNV---LIDGVLGSGKTWVALD 169
Query: 388 VCGYKQLI-----KIKWKRPEPVAFNDPRKSGDQILELGPLELDKPTLEYAKCESLKSAD 442
VC ++ KI W + + S + +LE L+ L Y + S
Sbjct: 170 VCLSYKVQCKMDFKIFW-----LNLKN-CNSPETVLE--MLQ----KLLYQIDPNWTSRS 217
Query: 443 EHVKKIFSCAHRGRKQAVELVK-KKHVDS--VKRHDLDDT-SREVLITKYTVSIRSLQEH 498
+H I H + + L+K K + + V L + + +
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLV----LLNVQNAKAW-------------- 259
Query: 499 HKAKPLDKRAKVWLKELIDKRNKHL-RLLRTENYKVFEWLLDELKIVFRPGPT--ILNKV 555
+ K+ L+ R K + L LD + P +L K
Sbjct: 260 ---NAFNLSCKI----LLTTRFKQVTDFLSAATTTHIS--LDHHSMTLTPDEVKSLLLKY 310
Query: 556 --HRKESLRFLVDKH-------IGDVKTERLTQLRN--KFNQEKIN-------------- 590
R + L V I + + L N N +K+
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 591 ---FYKKKAEFLE------------WT-MEQE---------------KKYGKEPTVTKEE 619
+ + + F W + + +K KE T++
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS--- 427
Query: 620 IESIWKKYEELAEKE-------LEQYEPPKHYHQ 646
I SI+ + + E E ++ Y PK +
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Score = 46.0 bits (108), Expect = 4e-05
Identities = 73/518 (14%), Positives = 147/518 (28%), Gaps = 158/518 (30%)
Query: 83 KSIMCMTIRTTQLTPVMLAMVMMVH-LHV-----TTSIFNSMMHVYNELNIPTSWHILKC 136
K+ + + V M + L++ ++ + + +++ P
Sbjct: 163 KT--WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID-PNWTSRSDH 219
Query: 137 SFSIFRRIESVKEEL----GSSDYYLQLINL-------ISKSLNLSSAN-STTQGINQII 184
S +I RI S++ EL S Y L+ L + NLS TT+
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK---- 275
Query: 185 CYGIGNFTDSIAAKYQFVLLLLLKIEYDCEILIYDPIFNELELELIEIF--KLELIIQ-- 240
TD ++A I + E+ + L+ Q
Sbjct: 276 -----QVTDFLSAATT------------THISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 241 -NEECKHTITHAKTLVYMPRCPIQLI------NNILYSNWTRENLSNLILLSNSISTVVD 293
E PR + +I + NW N L+ I + ++
Sbjct: 319 PREVLTT----------NPRR-LSIIAESIRDGLATWDNWKHVNCDK---LTTIIESSLN 364
Query: 294 SNTDAFLKSNLQFLFHIKEFLEEVPVVNNFKFNDIFNDTSLHCFLPTKLNSIEQDIW-DL 352
A + L + F + PT L S+ IW D+
Sbjct: 365 VLEPAEYRKMFDRLS-V--FPPSAHI-------------------PTILLSL---IWFDV 399
Query: 353 RFLEPEYTECNFEKTKSGAFVSSLIKVGAGLGETNVCGYKQLIKIKWKRPEPVAFNDPRK 412
+ K SL++ K+P+ + P
Sbjct: 400 IKSDVMVVVNKLHK-------YSLVE---------------------KQPKESTISIP-- 429
Query: 413 SGDQILELGPLELDKPTL------EYAKCESLKSADEHVKKI--FSCAHRGRKQAVELVK 464
LEL ++ L Y ++ S D + + +H G
Sbjct: 430 --SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH-------- 479
Query: 465 KKHVDSVKRHDLDDTSREVLITKYTVSIRSLQE--HHKAKPLDKRAKVWLKELIDKRN-- 520
H+ +++ + R V + R L++ H + + + L L +
Sbjct: 480 --HLKNIEHPERMTLFRMVF-----LDFRFLEQKIRHDSTAWNASGSI-LNTLQQLKFYK 531
Query: 521 KHLRLLRTENYKVFEWLLDEL-KIVFRPGPTILNKVHR 557
++ +N +E L++ + + + ++ +
Sbjct: 532 PYI----CDNDPKYERLVNAILDFLPKIEENLICSKYT 565
Score = 39.1 bits (90), Expect = 0.005
Identities = 40/357 (11%), Positives = 92/357 (25%), Gaps = 147/357 (41%)
Query: 423 LELDKPTLEYAKCESL---KSADEHVKKIFSCAHRGRKQAVELVKKKHVDSVKRHDLD-- 477
++ K L + + + K A ++F +++ V +K V+ V R +
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV----QKFVEEVLRINYKFL 94
Query: 478 ------DTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENY 531
+ + ++T+ + R + ++ + K V + K + L LR
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRD-RLYNDNQVFAKY-NVSRLQPYLKLRQALLELRPAKN 152
Query: 532 ------------------------------KVFEWL------------------------ 537
K+F WL
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-WLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 538 ---------------LDELK------IVFRPGPT---ILNKVHRKESLR-F------LV- 565
+ ++ + +P +L V ++ F L+
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271
Query: 566 --DKHIGD-VKTERLTQLRNKFNQEKINFYKKKAE--FLEWTMEQEKKYGKEPTVTKEEI 620
K + D + T + + + + + L++ + + P E+
Sbjct: 272 TRFKQVTDFLSAATTTHIS--LDHHSMTLTPDEVKSLLLKYL---DCRPQDLP----REV 322
Query: 621 ESI---------------------WKKY-----EELAEKELEQYEPP---KHYHQFA 648
+ WK + E L EP K + + +
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
>2vqe_O 30S ribosomal protein S15; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1eg0_F*
1gix_R* 1hnw_O* 1hnx_O* 1hnz_O* 1hr0_O 1ibk_O* 1ibl_O*
1ibm_O 1jgo_R* 1jgp_R* 1jgq_R* 1ml5_R* 1xmo_O* 1xmq_O*
1xnq_O* 1xnr_O* 1yl4_R 2b64_O* 2b9m_O* ...
Length = 89
Score = 34.1 bits (79), Expect = 0.019
Identities = 23/80 (28%), Positives = 39/80 (48%)
Query: 464 KKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHL 523
K+K + R D S EV + T+ I L EH K D + L ++ +R + L
Sbjct: 8 KQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRRLL 67
Query: 524 RLLRTENYKVFEWLLDELKI 543
R L+ E+ + + L+++L I
Sbjct: 68 RYLQREDPERYRALIEKLGI 87
>3ulw_A 30S ribosomal protein S15; structural genomics, IDP90515, CE
structural genomics of infectious diseases, csgid, rRNA
BIN translation; 2.36A {Campylobacter jejuni}
Length = 93
Score = 33.3 bits (77), Expect = 0.032
Identities = 22/80 (27%), Positives = 38/80 (47%)
Query: 464 KKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHL 523
K + V + D S EV + T I L EH K D +++ L +L+ +R + L
Sbjct: 11 KAEIVAKFAKKPGDTGSTEVQVALLTARIAELTEHLKIYKKDFSSRLGLLKLVGQRKRLL 70
Query: 524 RLLRTENYKVFEWLLDELKI 543
L+ ++Y + L+ EL +
Sbjct: 71 SYLKRKDYNSYSKLITELNL 90
>1a32_A Ribosomal protein S15; multiwavelength anomalous diffraction,
protein-RNA, ribosomal protein interactions, ribosome,
RNA-binding; 2.10A {Geobacillus stearothermophilus}
SCOP: a.16.1.2 PDB: 1qd7_H
Length = 88
Score = 32.9 bits (76), Expect = 0.042
Identities = 21/80 (26%), Positives = 42/80 (52%)
Query: 464 KKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHL 523
K++ ++ K H+ D S EV I T I +L EH + D ++ L +++ KR + L
Sbjct: 7 KREIIEQFKVHENDTGSPEVQIAILTEQINNLNEHLRVHKKDHHSRRGLLKMVGKRRRLL 66
Query: 524 RLLRTENYKVFEWLLDELKI 543
LR ++ + ++++L +
Sbjct: 67 AYLRNKDVARYREIVEKLGL 86
>3r8n_O 30S ribosomal protein S15; protein biosynthesis, RNA, tRNA,
transfer RNA, 16S ribosomal subunit, RRF; 3.00A
{Escherichia coli} PDB: 1p6g_O 1p87_O 2ykr_O 3oar_O
3oaq_O 3ofb_O 3ofa_O 3ofp_O 3ofx_O 3ofy_O 3ofo_O 3r8o_O
3i1m_O 2qan_O* 2qb9_O* 2qbb_O* 2qbd_O 2qbf_O 2qbh_O*
2qbj_O* ...
Length = 88
Score = 32.9 bits (76), Expect = 0.044
Identities = 20/80 (25%), Positives = 33/80 (41%)
Query: 464 KKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHL 523
K V R D S EV + T I LQ H D ++ L ++ +R K L
Sbjct: 7 TAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLL 66
Query: 524 RLLRTENYKVFEWLLDELKI 543
L+ ++ + L++ L +
Sbjct: 67 DYLKRKDVARYTQLIERLGL 86
>3sgh_A SUSD homolog; alpha-alpha superhelix, structural genomics, joint
center FO structural genomics, JCSG, protein structure
initiative; HET: MSE; 1.70A {Bacteroides
thetaiotaomicron}
Length = 499
Score = 34.1 bits (77), Expect = 0.16
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 3/83 (3%)
Query: 154 SDYYLQLINLISKSLNLSSANSTTQGINQII-CYGIGNFTDSI-AAKYQFVLLLLLKIEY 211
Y + N + + Q+ YG+ Y + + Y
Sbjct: 78 GRLYGYIYPSFFLVENSTEKKGVIYAMAQLTRVYGMQLLASLQGPIPYTQMKAGETEAPY 137
Query: 212 DCEILIYDPIFNELELELIEIFK 234
D E ++ +F++L+ I I K
Sbjct: 138 DNEQTVWHAMFDDLD-NAITILK 159
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.8 bits (74), Expect = 0.21
Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 600 EWTMEQEKKYGKEPTVTKEEIESIWKKYEELAEKELEQYEPPKHYHQ 646
+W EQ K+ + +K + +K A+K+LE++ + +
Sbjct: 89 KWREEQRKRLQELDAASKVMEQEWREK----AKKDLEEWN--QRQSE 129
Score = 31.3 bits (70), Expect = 0.60
Identities = 7/50 (14%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 575 ERLTQLRNKFNQEKINFYKKKAEFLEWTMEQ----EKKYGKEPTVTKEEI 620
+ R K ++ + ++++E +E +K + ++P +I
Sbjct: 107 VMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQP---DADI 153
Score = 30.9 bits (69), Expect = 0.77
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 18/65 (27%)
Query: 573 KTERLTQLRNKFNQEKINFYKKKAEFLEWTMEQEKKYGKEPTVTKEEIESIWKKYEELAE 632
+ E+ +L+ K + E E+ KK ++E ++ E E
Sbjct: 91 REEQRKRLQELDAASK----VMEQE----WREKAKK----------DLEEWNQRQSEQVE 132
Query: 633 KELEQ 637
K
Sbjct: 133 KNKIN 137
>3bbn_O Ribosomal protein S15; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 90
Score = 31.1 bits (71), Expect = 0.22
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 462 LVKKK--HVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKR 519
+ K V S ++ + + S E + +T IR L H + D ++ L++ + KR
Sbjct: 1 MKKNSFISVISDEKKEENKGSVEFQVFCFTNKIRRLTLHLELHKKDYSSQRGLRKTLGKR 60
Query: 520 NKHLRLLRTENYKVFEWLLDELKI 543
+ L L N ++ L+ +L I
Sbjct: 61 QRLLAYLLKINGVRYKELISKLNI 84
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A
{Escherichia coli}
Length = 505
Score = 33.3 bits (75), Expect = 0.26
Identities = 20/173 (11%), Positives = 54/173 (31%), Gaps = 6/173 (3%)
Query: 469 DSVKRHDLDDTSREVLITKY-TVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLR 527
+ K ++ + + Y + + + K + W + + R + + +
Sbjct: 162 EKAKAGIMEKINHKTPEEIYEALGFNKDESQRQEKAKQQAEDAWDRLPPNVRKFDVDVEQ 221
Query: 528 TENYKVFEWLLDELKIVFRPGPTILNKVHRKESLRFLVDKHIGDVKTERLTQLRNKFNQE 587
+ +LD+ V T + E + + + E + + N+E
Sbjct: 222 FH----YLVVLDDYGNVLSVTRTGVRPYVGSEKAKAGIMDKVDHKTPEEIYEALGFNNEE 277
Query: 588 KINF-YKKKAEFLEWTMEQEKKYGKEPTVTKEEIESIWKKYEELAEKELEQYE 639
KKA + + + + V + E I ++ + + Y+
Sbjct: 278 PQRQNQAKKAAYDVFYSFSMNRDRIQSDVLNKAAEVISDIGNKVGDYLGDAYK 330
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 117
Score = 30.5 bits (69), Expect = 0.48
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 376 LIKVGAGLGETNVCGYKQLIKIKWKRPEPVAFNDPRKSGDQILELGPLELDKPTLEYAKC 435
+ K LG + V G K I + +A + GDQ+LE + L T + A
Sbjct: 25 VQKGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQA-R 83
Query: 436 ESLKSADEHVK 446
+ + +
Sbjct: 84 LIIGQQCDTIT 94
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin,
ankyrin-binding domain, actin capping, AC binding,
cytoskeleton, disease mutation; 2.10A {Homo sapiens}
PDB: 3f57_A
Length = 218
Score = 31.5 bits (71), Expect = 0.64
Identities = 11/74 (14%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 567 KHIGDVKTERLTQLRNKFNQEKINFYKKKAEFLEWTMEQEKKYGKEPTVTKEEIESIWKK 626
+ ++ R+ L ++ + ++ AE L E+ ++ ++ + ES +
Sbjct: 91 ADLLELIDTRMQLLAASYDLHR--YFYTGAEILGLIDEKHRELPEDVGLDASTAESFHRV 148
Query: 627 YEELAEKELEQYEP 640
+ E+EL
Sbjct: 149 HTAF-ERELHLLGV 161
>3gzs_A Uncharacterized SUSD superfamily protein; structural genomics,
joint center for structural genomics, J protein
structure initiative, PSI-2; 2.09A {Bacteroides
fragilis}
Length = 515
Score = 31.4 bits (70), Expect = 0.93
Identities = 24/143 (16%), Positives = 47/143 (32%), Gaps = 17/143 (11%)
Query: 94 QLTPVMLAMVMMVHLHVTTSIFNSMMHVYNELNIPTSWHILKCSFSIFRRIESVKEELGS 153
Q+ + ++ + FN + N + +W ++ +
Sbjct: 52 QIGVNLAGDAWAGYMSPRDNKFNGSKNFTN-YFMYENW-----VNYVYSFM--------V 97
Query: 154 SDYYLQLINLISKSLNLSSANSTTQGINQII-CYGIGNFTDSI-AAKYQFVLLLLLKIEY 211
+D Y + + S + + N + QII + TD Y V K+ Y
Sbjct: 98 TDVYSPWMQIKRISQDEGTRNDEIYALAQIIKIAALHRTTDMFGPIPYSQVGKGSFKVAY 157
Query: 212 DCEILIYDPIFNELELELIEIFK 234
D + +Y ELE E ++
Sbjct: 158 DSQESVYRSFLKELE-EAVQTLD 179
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.95
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 11/28 (39%)
Query: 617 KEEIESIWKKYEELAEKELEQYEP---P 641
K+ + KK L + L+ Y P
Sbjct: 19 KQAL----KK---L-QASLKLYADDSAP 38
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction,
membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 28.9 bits (65), Expect = 1.3
Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 380 GAGLGETNVCGYKQLIKIKWKRPEPVAFNDPR-KSGDQILELGPLELDKPTLEYAKCESL 438
G I +K + +A D + GD +L++ + +L AK +
Sbjct: 14 NEEYGLRLASH----IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAK-TLI 68
Query: 439 KSADEHVK 446
+ + +K
Sbjct: 69 ERSKGKLK 76
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple
helical bundle, actin cappin binding, alternative
splicing, calcium; 2.30A {Homo sapiens}
Length = 149
Score = 29.8 bits (67), Expect = 1.6
Identities = 8/50 (16%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 591 FYKKKAEFLEWTMEQEKKYGKEPTVTKEEIESIWKKYEELAEKELEQYEP 640
F + E +W E+ + E ++ +K++ E E++
Sbjct: 51 FQRDAEELEKWIQEKLQIASDENYKDPTNLQGKLQKHQAF-EAEVQANSG 99
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex,
spectrin, spectrin repeat, three helix bundle, ANKY
binding, disease mutation, structural protein, ZU5
sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Length = 326
Score = 30.3 bits (68), Expect = 1.8
Identities = 9/66 (13%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 575 ERLTQLRNKFNQEKINFYKKKAEFLEWTMEQEKKYGKEPTVTKEEIESIWKKYEELAEKE 634
R+ L ++ + ++ AE L E+ ++ ++ + ES + + E++
Sbjct: 208 TRMQLLAASYDLHR--YFYTGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAF-ERD 264
Query: 635 LEQYEP 640
+
Sbjct: 265 VHLLGV 270
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 28.9 bits (65), Expect = 2.2
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 10/84 (11%)
Query: 372 FVSSLIKVGAGLG--------ETNVCGYKQLIKIKWKRPEPVAFNDPR-KSGDQILELGP 422
F L K GLG ++ K I +K A D R + D ++E+
Sbjct: 6 FPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDG 65
Query: 423 LELDKPTLEYAKCESLKSADEHVK 446
L T +A L++ V+
Sbjct: 66 TSLVGVTQSFA-ASVLRNTKGRVR 88
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin
capping, actin-binding, alternative splicing,
calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Length = 323
Score = 29.9 bits (67), Expect = 2.3
Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
Query: 567 KHIGDVKTERLTQLRNKFNQEKINFYKKKAEFLEWTMEQEKKYGKEPTVTKEEIESIWKK 626
+ ++ R L + K FY E ++ KK +E + +E++ +
Sbjct: 96 ADLLELIDTRTQILAASYELHK--FYHDAKEIFGRIQDKHKKLPEELGRDQNTVETLQRM 153
Query: 627 YEELAEKELEQYEP 640
+ E +++
Sbjct: 154 HTTF-EHDIQALGT 166
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Length = 93
Score = 27.9 bits (62), Expect = 2.6
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 565 VDKHIGDVKTERLTQLRNKFNQEKINFYKKKAEFLEWTMEQEKKYGKEP 613
+D + +K + + R + KI+ Y +AE ++ ++QEK+ GK
Sbjct: 42 IDMLLQVLKGTKESSKRCVL-RTKISGYMDRAENIKKYLDQEKEDGKSG 89
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 30.0 bits (67), Expect = 2.6
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 565 VDKHIGDVKTERLTQLRNKFNQEKINFYKKKAEFLEWTMEQEKKYGKEP--TVTKEEIES 622
++ +V R+ + ++ ++ + K + E K G EP V +
Sbjct: 267 INFTDANVPYTRIIEHKH------FDYVETKHTVVTKEYPLEWKVGDEPYYPVNDNKNME 320
Query: 623 IWKKYEELAEKE 634
++KKY ELA +E
Sbjct: 321 LFKKYRELASRE 332
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical
linker region, 2 tandem 3-helix coiled- coils,
structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1
a.7.1.1 PDB: 1aj3_A
Length = 213
Score = 29.5 bits (66), Expect = 3.1
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
Query: 590 NFYKKKAEFLEWTMEQEKKYGKEPTVTKEE-IESIWKKYEELAEKELEQYEP 640
F E W E+ E I+ + KK+E E + ++
Sbjct: 110 QFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAF-ETDFTVHKD 160
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer,
complex, three-helix bundle, alpha helix repeat, helical
linker, actin capping; 2.80A {Homo sapiens}
Length = 185
Score = 28.7 bits (64), Expect = 3.8
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Query: 579 QLRNKFNQEKINFYKKKAEFLEWTMEQEKKYGKEPTV-TKEEIESIWKKYEELAEKELEQ 637
R + E F + + W + QE T + +E + K++E EK
Sbjct: 103 WERLRMLLEVCQFSRDASVAEAWLIAQEPYLASGDFGHTVDSVEKLIKRHEAF-EKSTAS 161
Query: 638 YEP 640
+
Sbjct: 162 WAE 164
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3;
1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A*
1viy_A 1t3h_A 1n3b_A
Length = 218
Score = 29.0 bits (66), Expect = 3.9
Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 616 TKEEIESIWKKYEELAEKELEQYEP---PKHYHQ 646
++ + Y +LA + + Q +P H+H
Sbjct: 184 IASDVARLHAHYLQLASQFVSQEKPEGGSHHHHH 217
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 27.2 bits (61), Expect = 4.0
Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 380 GAGLGETNVCGYKQLIKIKWKRPEPVAFNDPR-KSGDQILELGPLELDKPTLEYAKCESL 438
G I +K + +A D + GD +L++ + +L AK +
Sbjct: 12 NEEYGLRLASH----IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAK-TLI 66
Query: 439 KSADEHVK 446
+ + +K
Sbjct: 67 ERSKGKLK 74
>3p1u_A SUSD homolog; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology;
2.05A {Parabacteroides distasonis atcc 8503}
Length = 529
Score = 29.5 bits (65), Expect = 4.1
Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 7/87 (8%)
Query: 154 SDYYLQLINLISKSLNLSSANSTT----QGINQII-CYGIGNFTDSI-AAKYQFVLLLLL 207
+Y Q+ ++ +L+ + +I Y D + ++
Sbjct: 74 EEYLKQIASINIVIRSLTEKDKDAYANTIAFARIWRVYVHTLAADKFGPMPFPAYEIVEA 133
Query: 208 KIEYDCEILIYDPIFNELELELIEIFK 234
Y IYD F EL+ I F
Sbjct: 134 NPPYKSLKDIYDEYFRELD-AAINGFN 159
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 29.0 bits (64), Expect = 5.5
Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 1/103 (0%)
Query: 376 LIKVGAGLGETNVCGYKQLIKIKWKRPEPVAFNDPRKSGDQILELGPLELDKPTLEYAKC 435
+ G +G G I + + A + + GDQIL + ++ E A
Sbjct: 14 KFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVL 73
Query: 436 ESLKS-ADEHVKKIFSCAHRGRKQAVELVKKKHVDSVKRHDLD 477
L E V + ++ VE + +
Sbjct: 74 FLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYE 116
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy
transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA
FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1
c.28.1.1
Length = 471
Score = 28.7 bits (65), Expect = 6.7
Identities = 9/32 (28%), Positives = 10/32 (31%), Gaps = 4/32 (12%)
Query: 489 TVSIR----SLQEHHKAKPLDKRAKVWLKELI 516
+S R L VWL ELI
Sbjct: 245 GLSPRQCLHRLLAEQPQALDGGAGSVWLNELI 276
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 28.7 bits (65), Expect = 7.2
Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 537 LLDE----LKIVFRPGPTILNKVHRK-ESLRFLVDKHIGDVKTERLTQLRNKFNQEKINF 591
L+DE +++ P L ++ +K + +R D + + E+ LR+ + +
Sbjct: 377 LIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQV 436
Query: 592 YKKKAEFLEWTMEQEKKYGKEPTVTKEEIESI 623
K W +EK+ + VT ++I +
Sbjct: 437 EDTKKS---W---KEKQGQENSEVTVDDIAMV 462
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 92
Score = 26.6 bits (59), Expect = 8.3
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 13/55 (23%)
Query: 598 FLEWTMEQEKKYGKE-PTVTKEEIESI----WK--------KYEELAEKELEQYE 639
+ + ++ E P + E+ WK KYEE A K+LE+Y
Sbjct: 15 SALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYN 69
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix
bundle, alpha helix repeat, helical linker, actin
capping; 2.80A {Homo sapiens} PDB: 1owa_A
Length = 161
Score = 27.6 bits (61), Expect = 8.5
Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 591 FYKKKAEFLEWTMEQEKKYGKEPTVTKEEIESIWKKYEELAEKELEQYEP 640
F + + +W ME+ + I+ ++K++ L E E++
Sbjct: 61 FKRDADDLGKWIMEKVNILTDKSYEDPTNIQGKYQKHQSL-EAEVQTKSR 109
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Length = 308
Score = 28.1 bits (62), Expect = 9.1
Identities = 28/210 (13%), Positives = 55/210 (26%), Gaps = 33/210 (15%)
Query: 430 LEYAKCESLKSADEHVKKIFSCAHRGRKQAVELVKKKHVDSVKRHDLDDTSREVLITKYT 489
YA E + E V I++ LV +++ +R + + R +
Sbjct: 103 FAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI------ 156
Query: 490 VSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRTENYKVFEWLLDELKIVFRPGP 549
++ + V + +K + K+FE L +
Sbjct: 157 -----FKKAREDARTRHHVYVTAALMEYYCSKDKSVAF----KIFELGLKKYG------- 200
Query: 550 TILNKVHRKESLRFLVDKHIGDVKTERLTQLRNKFNQEKINFYKKKAEFLEWTMEQEKKY 609
E + +D + L + +K E + E
Sbjct: 201 ------DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 254
Query: 610 GKEPTVTKEEIESIWKKYEELAEKELEQYE 639
G I + K+ +E E E
Sbjct: 255 G-----DLASILKVEKRRFTAFREEYEGKE 279
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.396
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,559,095
Number of extensions: 564823
Number of successful extensions: 1558
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1535
Number of HSP's successfully gapped: 78
Length of query: 648
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 548
Effective length of database: 3,909,693
Effective search space: 2142511764
Effective search space used: 2142511764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)