RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5134
(648 letters)
>d1a32a_ a.16.1.2 (A:) Ribosomal protein S15 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 85
Score = 57.4 bits (139), Expect = 3e-11
Identities = 21/80 (26%), Positives = 42/80 (52%)
Query: 464 KKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHL 523
K++ ++ K H+ D S EV I T I +L EH + D ++ L +++ KR + L
Sbjct: 6 KREIIEQFKVHENDTGSPEVQIAILTEQINNLNEHLRVHKKDHHSRRGLLKMVGKRRRLL 65
Query: 524 RLLRTENYKVFEWLLDELKI 543
LR ++ + ++++L +
Sbjct: 66 AYLRNKDVARYREIVEKLGL 85
>d1kuqa_ a.16.1.2 (A:) Ribosomal protein S15 {Thermus thermophilus
[TaxId: 274]}
Length = 84
Score = 57.0 bits (138), Expect = 5e-11
Identities = 23/80 (28%), Positives = 39/80 (48%)
Query: 464 KKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHL 523
K+K + R D S EV + T+ I L EH K D + L ++ +R + L
Sbjct: 5 KQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRRLL 64
Query: 524 RLLRTENYKVFEWLLDELKI 543
R L+ E+ + + L+++L I
Sbjct: 65 RYLQREDPERYRALIEKLGI 84
>d1vs5o1 a.16.1.2 (O:1-88) Ribosomal protein S15 {Escherichia coli
[TaxId: 562]}
Length = 88
Score = 55.5 bits (134), Expect = 2e-10
Identities = 20/80 (25%), Positives = 33/80 (41%)
Query: 464 KKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHL 523
K V R D S EV + T I LQ H D ++ L ++ +R K L
Sbjct: 7 TAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLL 66
Query: 524 RLLRTENYKVFEWLLDELKI 543
L+ ++ + L++ L +
Sbjct: 67 DYLKRKDVARYTRLIERLGL 86
>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 103
Score = 34.6 bits (79), Expect = 0.006
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
Query: 369 SGAFVSSLIKVGAGLGETNVCG--YKQLIKIKWKRPEPVAFNDPRKSGDQILELGPLELD 426
SG+ + ++ A G G + Q + I P A GD IL + +
Sbjct: 3 SGSSGNVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTE 62
Query: 427 KPTLEYAKCESLKSADEHVK 446
T A + +K+A +
Sbjct: 63 SMTHADA-QDRIKAASYQLC 81
>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 32.6 bits (74), Expect = 0.024
Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 7/83 (8%)
Query: 370 GAFVSSLIKV----GAGLGETNVCG--YKQLIKIKWKRPEPVAFNDPRKSGDQILELGPL 423
G+ SS + V A G G + I + A + GD I+ +
Sbjct: 1 GSSGSSGLTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQ 60
Query: 424 ELDKPTLEYAKCESLKSADEHVK 446
+ A ++ + ++
Sbjct: 61 SAENMLHAEA-QSKIRQSASPLR 82
>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 117
Score = 30.7 bits (69), Expect = 0.20
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 376 LIKVGAGLGETNVCGYKQLIKIKWKRPEPVAFNDPRKSGDQILELGPLELDKPTLEYAKC 435
+ K LG + V G K I + +A + GDQ+LE + L T + A
Sbjct: 25 VQKGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQA-R 83
Query: 436 ESLKSADEHVK 446
+ + +
Sbjct: 84 LIIGQQCDTIT 94
>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 29.1 bits (65), Expect = 0.41
Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Query: 380 GAGLGETNVCG--YKQLIKIKWKRPEPVAFNDPRKSGDQILELGPLELDKPTLEYAKCES 437
G G + + I P A GD ++ + + D T A
Sbjct: 10 PGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEA-QNK 68
Query: 438 LKSADEHVK 446
+KSA ++
Sbjct: 69 IKSASYNLS 77
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Hamster
(Cricetulus griseus) [TaxId: 10029]}
Length = 79
Score = 27.5 bits (61), Expect = 1.2
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 7/55 (12%)
Query: 585 NQEKINFYKKKAEFLEWTMEQEKKYGKEPTVTKEEIESIWKKYEELAEKELEQYE 639
+ KI + + + + K + YE+ A K E+YE
Sbjct: 17 YRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK-------QPYEKKAAKLKEKYE 64
>d2vata1 c.69.1.40 (A:7-382) Acetyl-CoA:deacetylcephalosporin C
acetyltransferase CefG {Acremonium chrysogenum [TaxId:
5044]}
Length = 376
Score = 29.8 bits (66), Expect = 1.2
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 283 LLSNSISTVVDSNT--DAFLKSNLQFLFHIKEFLEE 316
+ NS VVD+N D F+ + ++ FL++
Sbjct: 341 SIPNSRLCVVDTNEGHDFFVMEADKVNDAVRGFLDQ 376
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme
[TaxId: 117187]}
Length = 349
Score = 29.4 bits (65), Expect = 1.3
Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 2/78 (2%)
Query: 1 MPLDRMTQNEECKHTITHAKTLVYMPRCPIQLIN--NILYSNWTRENLSNLILLSNSIST 58
P + + ++ + P + + S +N + + S S
Sbjct: 101 KPDHFIVVQKTTGNSKITNLNIQNWPVHCFDITGSSQLTISGLILDNRAGDKPNAKSGSL 160
Query: 59 VVDSNTDALCILALANVV 76
NTD I + +V
Sbjct: 161 PAAHNTDGFDISSSDHVT 178
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli
[TaxId: 562]}
Length = 208
Score = 29.0 bits (64), Expect = 1.5
Identities = 21/180 (11%), Positives = 55/180 (30%), Gaps = 10/180 (5%)
Query: 471 VKRHDLDDTSREVL--ITKYTVSIRSLQEHHKAKPLDKRAKVWLKELIDKRNKHLRLLRT 528
+ D D +R+V+ +I + + L+E I + L
Sbjct: 28 INVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEEKNWLNA 87
Query: 529 -ENYKVFEWLLDELKIVFRPGPTILNKVHRKESLRFLVDKHIGDVKTERLTQLRNKFNQE 587
+ + + +++ P + + + SL ++ + + R +
Sbjct: 88 LLHPLIQQETQHQIQQATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRDD 147
Query: 588 KINFYKKKAEFLEWTMEQEKKYG-------KEPTVTKEEIESIWKKYEELAEKELEQYEP 640
+ ++ + T E P ++ + Y +LA + + Q +P
Sbjct: 148 VTREHVEQILAAQATREARLAVADDVIDNNGAPDAIASDVARLHAHYLQLASQFVSQEKP 207
>d1quua2 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 124
Score = 27.8 bits (61), Expect = 1.7
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 9/73 (12%)
Query: 575 ERLTQLRNKFNQEKINFYKKKAEFLEWTMEQEK-KYGKEPTVTKEEIESIWKKYEELAEK 633
E + QL + F K+ A F W + + EEI+S+ +E+ +
Sbjct: 1 ETIDQL-------HLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQF-KA 52
Query: 634 ELEQYEPPKHYHQ 646
L + + +
Sbjct: 53 TLPEADGERQSIM 65
>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF
{Human (Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 27.1 bits (60), Expect = 2.3
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 376 LIKVGAGLGETNVCG-YKQLIKIKWKRPEPVAFNDPRKSGDQILELGPLELDKPTLEYAK 434
L K G G K I+ P A +GD+++E+ ++K T +
Sbjct: 9 LEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQV- 67
Query: 435 CESLKSADEHVK 446
+++A V+
Sbjct: 68 VSRIRAALNAVR 79
>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 93
Score = 26.4 bits (58), Expect = 3.9
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 573 KTERLTQLRNKFNQEKINFYKKKAEFLEWTMEQEKKYGK 611
K + + R + KI+ Y +AE ++ ++QEK+ GK
Sbjct: 50 KGTKESSKRCVL-RTKISGYMDRAENIKKYLDQEKEDGK 87
>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 121
Score = 26.9 bits (59), Expect = 4.0
Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 214 EILIYDPIFNELELELIEIFKLELIIQNEECKHTITH---AKTLVYMPRCPIQLINNILY 270
E+ + + E E EL + FK+ + + A+ L MPR +
Sbjct: 2 ELYVNFELPPEAEEELRKYFKIVRGGDLGNVEAALVSRITAEELAKMPRLKFIQVVTAGL 61
Query: 271 SNWTRENLSNLILLSNS 287
+ E++ + ++ +
Sbjct: 62 DHLPWESIPPHVTVAGN 78
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 27.8 bits (61), Expect = 4.3
Identities = 28/263 (10%), Positives = 81/263 (30%), Gaps = 36/263 (13%)
Query: 43 RENLSNLILLSNSISTVVDSNTDALCILALANVVKDKLKQKSIMCMTIRTTQLTPVMLAM 102
N + L++N+I + S LAL + + + ++
Sbjct: 95 NSNSELIRLINNAIKNDLASRNPTFMGLAL-----------HCIA-NVGSREMAEAFAGE 142
Query: 103 VMMVHLHVTTSIFNSMMHVYNELNIPTSWHILKCSFSIFRRIESVKEELGSSDYYLQLIN 162
+ + + T + + R + + + D+ ++++
Sbjct: 143 IPKILVAGDTMDSVKQ----------------SAALCLLRLYRTSPDLVPMGDWTSRVVH 186
Query: 163 LISKSLNLSSANSTTQGINQIICYGIGNFTDSI-AAKYQFVLLLLLKIEYDCEILIYDPI 221
L++ +L + T I + F S+ A + ++ + Y
Sbjct: 187 LLNDQ-HLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVP 245
Query: 222 FNELELELIEIFKLELIIQNEECKHTITHAKTLVYMPRCPIQLINNILYSNWTRENLSNL 281
L ++L+ + + ++ + +T + + +SN +
Sbjct: 246 APWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSN------AKN 299
Query: 282 ILLSNSISTVVDSNTDAFLKSNL 304
+L +IS ++ +++ L
Sbjct: 300 AVLFEAISLIIHHDSEPNLLVRA 322
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 114
Score = 26.6 bits (58), Expect = 4.8
Identities = 5/50 (10%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 591 FYKKKAEFLEWTMEQEKKYGKEPTVTKEEIESIWKKYEELAEKELEQYEP 640
F + W + ++ + +E + ++ E + Y+
Sbjct: 10 FAAQANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQY-EHNIINYKN 58
>d1giqa1 d.166.1.1 (A:3-209) Enzymatic component (Ia) of iota-toxin
{Clostridium perfringens [TaxId: 1502]}
Length = 207
Score = 27.1 bits (60), Expect = 5.2
Identities = 7/38 (18%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 586 QEKINFYKKKAEFLEWTMEQEKKYGKEPTVTKEEIESI 623
+ +F K K ++W ++ ++ K + E E++
Sbjct: 2 ERPEDFLKDKENAIQWEKKEAERVEK--NLDTLEKEAL 37
>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 26.1 bits (57), Expect = 5.4
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 585 NQEKINFYKKKAEFLEWTMEQEKKYGKEPTVTKEEIESIWKKYEELAEKELEQYE 639
+ K + L+ T KKY + P K KY + ++E +++E
Sbjct: 25 KRAKYAKLHPEMSNLDLTKILSKKYKELPEKKK-------MKYIQDFQREKQEFE 72
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 90
Score = 25.7 bits (56), Expect = 5.7
Identities = 7/55 (12%), Positives = 15/55 (27%), Gaps = 7/55 (12%)
Query: 585 NQEKINFYKKKAEFLEWTMEQEKKYGKEPTVTKEEIESIWKKYEELAEKELEQYE 639
+ ++ + + E T + + K KY+ Q E
Sbjct: 35 KRRQLQEERPELSESELTRLLARMWNDLSEKKK-------AKYKAREAALKAQSE 82
>d3erja1 c.131.1.1 (A:2-117) Hypothetical protein AF2095
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 116
Score = 25.9 bits (57), Expect = 8.0
Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 27/100 (27%)
Query: 451 CAHRGRKQAVELVKKKHVDSVKRHDLDDTSREVLITKYTVSIRSLQEHHKAKPLDKRAKV 510
AH A+ K ++ + + VL K + ++ KA+ L +
Sbjct: 23 VAHA----AIIGYLKSDSSLRRKWLDEGQKKVVLKVKSLEELLGIKH--KAESLGLVTGL 76
Query: 511 W---------------------LKELIDKRNKHLRLLRTE 529
+ IDK +L LL+ E
Sbjct: 77 VQDAGLTEVPPGTITAVVIGPDEERKIDKVTGNLPLLKLE 116
>d2pl5a1 c.69.1.40 (A:5-366) Homoserine O-acetyltransferase
{Leptospira interrogans [TaxId: 173]}
Length = 362
Score = 26.6 bits (58), Expect = 9.7
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 297 DAFLKSNLQFLFHIKEFLE 315
D+FL N + + +K FLE
Sbjct: 341 DSFLLKNPKQIEILKGFLE 359
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.396
Gapped
Lambda K H
0.267 0.0658 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,383,322
Number of extensions: 113632
Number of successful extensions: 412
Number of sequences better than 10.0: 1
Number of HSP's gapped: 412
Number of HSP's successfully gapped: 47
Length of query: 648
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 557
Effective length of database: 1,158,166
Effective search space: 645098462
Effective search space used: 645098462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.5 bits)