BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5137
(476 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DMT|A Chain A, Structure Of Human Neutral Endopeptidase Complexed With
Phosphoramidon
pdb|1R1H|A Chain A, Structural Analysis Of Neprilysin With Various Specific
And Potent Inhibitors
pdb|1R1I|A Chain A, Structural Analysis Of Neprilysin With Various Specific
And Potent Inhibitors
pdb|1R1J|A Chain A, Structural Analysis Of Neprilysin With Various Specific
And Potent Inhibitors
pdb|1Y8J|A Chain A, Crystal Structure Of Human Nep Complexed With An
Imidazo[4,5- C]pyridine Inhibitor
pdb|2QPJ|A Chain A, Human Nep Complexed With A Bifunctional NepDPP IV
INHIBITOR
pdb|2YB9|A Chain A, Crystal Structure Of Human Neutral Endopeptidase Complexed
With A Heteroarylalanine Diacid
Length = 696
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/437 (42%), Positives = 255/437 (58%), Gaps = 53/437 (12%)
Query: 42 RVIHNYALWKLVLATVGSHMIGEFQEKKIEFKRILLGVQSEKARWRDCVEWTNKKMGMAV 101
R + N W+ ++ V S + ++E + F++ L G SE A WR C + N M AV
Sbjct: 311 RDLQNLMSWRFIMDLVSS-LSRTYKESRNAFRKALYGTTSETATWRRCANYVNGNMENAV 369
Query: 102 GSLFIRDNFNQESKETASEMIKSLREAFNELLDENHWMDNDTRSVAKEKANAMMERIGYP 161
G L++ F ESK ++I +RE F + LD+ WMD +T+ A+EKA A+ ERIGYP
Sbjct: 370 GRLYVEAAFAGESKHVVEDLIAQIREVFIQTLDDLTWMDAETKKRAEEKALAIKERIGYP 429
Query: 162 ETL-TNPVELTKEYLNATLTEVDRHDNAYWYHKLTLQQLQDLVPQFNWLQYLSSFLTIKI 220
+ + +N +L EYL
Sbjct: 430 DDIVSNDNKLNNEYLE-------------------------------------------- 445
Query: 221 DSNESLLNITKDHFLENIFNLLKFDAYQNLQKLRQPVNKDQWTTDPAIVNAFYNPNKNEI 280
LN +D + ENI LKF + L+KLR+ V+KD+W + A+VNAFY+ +N+I
Sbjct: 446 ------LNYKEDEYFENIIQNLKFSQSKQLKKLREKVDKDEWISGAAVVNAFYSSGRNQI 499
Query: 281 VLPAGILQPLFYSQSFPKSLNFGGIGVVIGHEITHGFDDKGRQFDKDGNMIEWWNNATIR 340
V PAGILQP F+S SLN+GGIG+VIGHEITHGFDD GR F+KDG++++WW +
Sbjct: 500 VFPAGILQPPFFSAQQSNSLNYGGIGMVIGHEITHGFDDNGRNFNKDGDLVDWWTQQSAS 559
Query: 341 AFRERAQCMIDQYSRYKLDEV-DMHINGRMTQGENIADNGGLKQSFRAYRKWVAAYGAEP 399
F+E++QCM+ QY + D H+NG T GENIADNGGL Q++RAY+ ++ G E
Sbjct: 560 NFKEQSQCMVYQYGNFSWDLAGGQHLNGINTLGENIADNGGLGQAYRAYQNYIKKNGEEK 619
Query: 400 LLPGLNLTHNQLFFLNYAQIWCGQMRPEDALTKVRSANHPPGKFRILGPLSNSRDFSEAY 459
LLPGL+L H QLFFLN+AQ+WCG RPE A+ +++ H PG FRI+G L NS +FSEA+
Sbjct: 620 LLPGLDLNHKQLFFLNFAQVWCGTYRPEYAVNSIKTDVHSPGNFRIIGTLQNSAEFSEAF 679
Query: 460 NCPLGTRMNPVAKCSVW 476
+C + MNP KC VW
Sbjct: 680 HCRKNSYMNPEKKCRVW 696
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 168 VELTKEYLNATLTEVDRHDNAYWYHKLTLQQLQDLVP------QFNWLQYLSSFL-TIKI 220
+EL KE NAT DR+D Y+K+TL Q+Q+ F+WL + + + T+ I
Sbjct: 223 MELEKEIANATAKPEDRNDPMLLYNKMTLAQIQNNFSLEINGKPFSWLNFTNEIMSTVNI 282
Query: 221 D-SNESLLNITKDHFLENIFNLLKFDAYQNLQKL 253
+NE + + +L + +L + ++LQ L
Sbjct: 283 SITNEEDVVVYAPEYLTKLKPILTKYSARDLQNL 316
>pdb|3DWB|A Chain A, Structure Of Human Ece-1 Complexed With Phosphoramidon
Length = 670
Score = 361 bits (927), Expect = e-100, Method: Compositional matrix adjust.
Identities = 181/435 (41%), Positives = 256/435 (58%), Gaps = 54/435 (12%)
Query: 43 VIHNYALWKLVLATVGSHMIGEFQEKKIEFKRILLGVQ-SEKARWRDCVEWTNKKMGMAV 101
+++NY +W LV T S + FQ+ +F ++ G + + RW+ CV T +G A+
Sbjct: 289 LLNNYMIWNLVRKT-SSFLDQRFQDADEKFMEVMYGTKKTSLPRWKFCVSDTENNLGFAL 347
Query: 102 GSLFIRDNFNQESKETASEMIKSLREAFNELLDENHWMDNDTRSVAKEKANAMMERIGYP 161
G +F++ F ++SK A+E+I +++AF E L WMD +TR AKEKA+A+ IGYP
Sbjct: 348 GPMFVKATFAEDSKSIATEIILEIKKAFEESLSTLKWMDEETRKSAKEKADAIYNMIGYP 407
Query: 162 ETLTNPVELTKEYLNATLTEVDRHDNAYWYHKLTLQQLQDLVPQFNWLQYLSSFLTIKID 221
+ +P EL K + + T VP
Sbjct: 408 NFIMDPKELDKVFNDYTA-----------------------VP----------------- 427
Query: 222 SNESLLNITKDHFLENIFNLLKFDAYQNLQKLRQPVNKDQWTTDPAIVNAFYNPNKNEIV 281
D + EN F +LR+ N+DQW+ P +VNA+Y+P KNEIV
Sbjct: 428 ----------DLYFENAMRFFNFSWRVTADQLRKAPNRDQWSMTPPMVNAYYSPTKNEIV 477
Query: 282 LPAGILQPLFYSQSFPKSLNFGGIGVVIGHEITHGFDDKGRQFDKDGNMIEWWNNATIRA 341
PAGILQ FY++S PK+LNFGGIGVV+GHE+TH FDD+GR++DKDGN+ WW N+++ A
Sbjct: 478 FPAGILQAPFYTRSSPKALNFGGIGVVVGHELTHAFDDQGREYDKDGNLRPWWKNSSVEA 537
Query: 342 FRERAQCMIDQYSRYKLDEVDMHINGRMTQGENIADNGGLKQSFRAYRKWVAAYGAEPLL 401
F+ + +CM++QYS Y ++ +NGR T GENIADNGGLK ++RAY+ WV GAE L
Sbjct: 538 FKRQTECMVEQYSNYSVN--GEPVNGRHTLGENIADNGGLKAAYRAYQNWVKKNGAEHSL 595
Query: 402 PGLNLTHNQLFFLNYAQIWCGQMRPEDALTKVRSANHPPGKFRILGPLSNSRDFSEAYNC 461
P L LT+NQLFFL +AQ+WC PE + + + H P +FR++G LSNS++FSE + C
Sbjct: 596 PTLGLTNNQLFFLGFAQVWCSVRTPESSHEGLITDPHSPSRFRVIGSLSNSKEFSEHFRC 655
Query: 462 PLGTRMNPVAKCSVW 476
P G+ MNP KC VW
Sbjct: 656 PPGSPMNPPHKCEVW 670
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 176 NATLTEVDRHDNAYWYHKLTLQQLQDLVPQFNWLQYLSS-FLTIKIDSNESLLNITKDHF 234
N T+ + R D YHK+T +LQ L P NWL +L++ F ++I+ +E ++ K+ +
Sbjct: 216 NITIPQEKRRDEELIYHKVTAAELQTLAPAINWLPFLNTIFYPVEINESEPIVVYDKE-Y 274
Query: 235 LENIFNLL 242
LE I L+
Sbjct: 275 LEQISTLI 282
>pdb|3ZUK|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Zinc
Metalloprotease Zmp1 In Complex With Inhibitor
pdb|3ZUK|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Zinc
Metalloprotease Zmp1 In Complex With Inhibitor
Length = 699
Score = 206 bits (524), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 134/437 (30%), Positives = 197/437 (45%), Gaps = 67/437 (15%)
Query: 47 YALWKLVLATVGSHMIGEFQEKKIEFKRILLGVQSEKARWRDCVEWTNKKMGMAVGSLFI 106
+A W+L+ A E + R L G Q + RW+ V MG AVG L++
Sbjct: 322 WARWRLIRARAPWLTRALVAEDFEFYGRTLTGAQQLRDRWKRGVSLVENLMGDAVGKLYV 381
Query: 107 RDNFNQESKETASEMIKSLREAFNELLDENHWMDNDTRSVAKEKANAMMERIGYPETLTN 166
+ +F ++K ++ +L+EA+ + E WM TR A K N ++GYP
Sbjct: 382 QRHFPPDAKSRIDTLVDNLQEAYRISISELDWMTPQTRQRALAKLNKFTAKVGYP----- 436
Query: 167 PVELTKEYLNATLTEVDRHDNAYWYHKLTLQQLQDLVPQFNWLQYLSSFLTIKIDSNESL 226
W Y S
Sbjct: 437 ---------------------------------------IKWRDY-------------SK 444
Query: 227 LNITKDHFLENIFNLLKFDAYQNLQKLRQPVNKDQWTTDPAIVNAFYNPNKNEIVLPAGI 286
L I +D N+ + + L KL PV++D+W P VNA+YNP NEIV PA I
Sbjct: 445 LAIDRDDLYGNVQRGYAVNHDRELAKLFGPVDRDEWFMTPQTVNAYYNPGMNEIVFPAAI 504
Query: 287 LQPLFYSQSFPKSLNFGGIGVVIGHEITHGFDDKGRQFDKDGNMIEWWNNATIRAFRERA 346
LQP F+ ++ N+GGIG VIGHEI HGFDD+G ++D DGN+++WW + F R
Sbjct: 505 LQPPFFDPQADEAANYGGIGAVIGHEIGHGFDDQGAKYDGDGNLVDWWTDDDRTEFAART 564
Query: 347 QCMIDQYSRYK-LDEVDM----HINGRMTQGENIADNGGLKQSFRAYRKWVAAYGAEPLL 401
+ +I+QY Y D VD H+ G T GENI D GGL + AY+ + A P++
Sbjct: 565 KALIEQYHAYTPRDLVDHPGPPHVQGAFTIGENIGDLGGLSIALLAYQLSLNGNPA-PVI 623
Query: 402 PGLNLTHNQLFFLNYAQIWCGQMRPEDALTKVRSANHPPGKFRILGPLSNSRDFSEAYNC 461
G LT Q F +AQIW + R +A+ ++ H P +FR G + N F +A++
Sbjct: 624 DG--LTGMQRVFFGWAQIWRTKSRAAEAIRRLAVDPHSPPEFRCNGVVRNVDAFYQAFDV 681
Query: 462 PLGTR--MNPVAKCSVW 476
++P + +W
Sbjct: 682 TEDDALFLDPQRRVRIW 698
>pdb|3HZ3|A Chain A, Lactobacillus Reuteri N-Terminally Truncated Glucansucrase
Gtf180(D1025n)-Sucrose Complex
Length = 1039
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 12/83 (14%)
Query: 205 QFNWLQYLSSFLTIKIDSNESLLNITKDHFLENI-FNLLK-----FDAYQNLQKLRQPVN 258
+ NWL YL +F TI ++ E+ + + + ++N+ +LL F+A N+++ N
Sbjct: 258 ELNWLYYLMNFGTITGNNPEANFDGIRVNAVDNVDVDLLSIARDYFNAAYNMEQSDASAN 317
Query: 259 K-----DQWT-TDPAIVNAFYNP 275
K + W DPA VN NP
Sbjct: 318 KHINILEDWGWDDPAYVNKIGNP 340
>pdb|2ICW|J Chain J, Crystal Structure Of A Complete Ternary Complex Between
Tcr, Superantigen, And Peptide-Mhc Class Ii Molecule
pdb|2ICW|L Chain L, Crystal Structure Of A Complete Ternary Complex Between
Tcr, Superantigen, And Peptide-Mhc Class Ii Molecule
Length = 113
Score = 29.3 bits (64), Expect = 4.9, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 166 NPVELTKEYLNATLTEVDRHDNAYWYHKLTLQQLQ 200
N V +T E + + + + H+N YWY + T +L+
Sbjct: 10 NKVAVTGEKVTLSCNQTNNHNNMYWYRQDTGHELR 44
>pdb|3E2H|C Chain C, Structure Of The M67 High-Affinity Mutant Of The 2c Tcr In
Complex With LdQL9
Length = 110
Score = 29.3 bits (64), Expect = 5.0, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 166 NPVELTKEYLNATLTEVDRHDNAYWYHKLTLQQLQ 200
N V +T E + + + + H+N YWY + T +L+
Sbjct: 9 NKVAVTGEKVTLSCNQTNNHNNMYWYRQDTGHELR 43
>pdb|2E7L|C Chain C, Structure Of A High-Affinity Mutant Of The 2c Tcr In
Complex With LdQL9
pdb|2E7L|D Chain D, Structure Of A High-Affinity Mutant Of The 2c Tcr In
Complex With LdQL9
pdb|2OI9|C Chain C, Structure Of The 2cLDQL9 ALLOGENEIC COMPLEX
Length = 121
Score = 29.3 bits (64), Expect = 5.3, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 166 NPVELTKEYLNATLTEVDRHDNAYWYHKLTLQQLQ 200
N V +T E + + + + H+N YWY + T +L+
Sbjct: 10 NKVAVTGEKVTLSCNQTNNHNNMYWYRQDTGHELR 44
>pdb|3E3Q|E Chain E, Structure Of The 3alpham13 High-Affinity Mutant Of The 2c
Tcr In Complex With LdQL9
pdb|3E3Q|F Chain F, Structure Of The 3alpham13 High-Affinity Mutant Of The 2c
Tcr In Complex With LdQL9
pdb|3E3Q|EE Chain e, Structure Of The 3alpham13 High-Affinity Mutant Of The 2c
Tcr In Complex With LdQL9
pdb|3E3Q|J Chain J, Structure Of The 3alpham13 High-Affinity Mutant Of The 2c
Tcr In Complex With LdQL9
pdb|3E3Q|N Chain N, Structure Of The 3alpham13 High-Affinity Mutant Of The 2c
Tcr In Complex With LdQL9
pdb|3E3Q|S Chain S, Structure Of The 3alpham13 High-Affinity Mutant Of The 2c
Tcr In Complex With LdQL9
pdb|3E3Q|W Chain W, Structure Of The 3alpham13 High-Affinity Mutant Of The 2c
Tcr In Complex With LdQL9
pdb|3E3Q|AA Chain a, Structure Of The 3alpham13 High-Affinity Mutant Of The 2c
Tcr In Complex With LdQL9
Length = 111
Score = 29.3 bits (64), Expect = 5.3, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 166 NPVELTKEYLNATLTEVDRHDNAYWYHKLTLQQLQ 200
N V +T E + + + + H+N YWY + T +L+
Sbjct: 10 NKVAVTGEKVTLSCNQTNNHNNMYWYRQDTGHELR 44
>pdb|3C7L|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7L|B Chain B, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 137
Score = 28.9 bits (63), Expect = 7.2, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 42/114 (36%), Gaps = 32/114 (28%)
Query: 86 WRDCVEWT-NKKMGMAVGSLFIRDNFNQESKE--TASEMIKSLREAFNELLDENHWMDND 142
WR+ + N K G+A F++ F++E+ E A E K +R A +H D
Sbjct: 18 WRESFDLLLNSKNGVAAFHAFLKTEFSEENLEFWLACEEFKKIRSATKLASRAHHIFDEY 77
Query: 143 TRS-----------------------------VAKEKANAMMERIGYPETLTNP 167
RS VA+ K +ME+ YP L +P
Sbjct: 78 IRSEAPKEVNIDHETRELTKTNLQAATTSCFDVAQGKTRTLMEKDSYPRFLKSP 131
>pdb|3C7K|B Chain B, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|D Chain D, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 129
Score = 28.5 bits (62), Expect = 8.2, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 42/114 (36%), Gaps = 32/114 (28%)
Query: 86 WRDCVEWT-NKKMGMAVGSLFIRDNFNQESKE--TASEMIKSLREAFNELLDENHWMDND 142
WR+ + N K G+A F++ F++E+ E A E K +R A +H D
Sbjct: 10 WRESFDLLLNSKNGVAAFHAFLKTEFSEENLEFWLACEEFKKIRSATKLASRAHHIFDEY 69
Query: 143 TRS-----------------------------VAKEKANAMMERIGYPETLTNP 167
RS VA+ K +ME+ YP L +P
Sbjct: 70 IRSEAPKEVNIDHETRELTKTNLQAATTSCFDVAQGKTRTLMEKDSYPRFLKSP 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,731,931
Number of Sequences: 62578
Number of extensions: 633580
Number of successful extensions: 1437
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1417
Number of HSP's gapped (non-prelim): 21
length of query: 476
length of database: 14,973,337
effective HSP length: 102
effective length of query: 374
effective length of database: 8,590,381
effective search space: 3212802494
effective search space used: 3212802494
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)