Query psy5137
Match_columns 476
No_of_seqs 238 out of 1791
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 18:16:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5137.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5137hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3624|consensus 100.0 1.2E-73 2.6E-78 618.1 38.5 383 22-476 301-687 (687)
2 COG3590 PepO Predicted metallo 100.0 5.1E-72 1.1E-76 549.2 27.6 394 18-476 254-654 (654)
3 PF01431 Peptidase_M13: Peptid 100.0 2.2E-52 4.8E-57 387.7 12.1 203 270-475 1-206 (206)
4 PF05649 Peptidase_M13_N: Pept 99.8 1.4E-19 2.9E-24 184.3 14.8 152 8-161 237-390 (390)
5 COG3590 PepO Predicted metallo 99.5 8.6E-15 1.9E-19 146.0 2.9 256 104-385 132-430 (654)
6 PF05649 Peptidase_M13_N: Pept 99.3 8E-14 1.7E-18 141.9 -5.6 240 86-351 107-385 (390)
7 KOG3624|consensus 98.7 1.2E-08 2.6E-13 111.4 6.3 181 152-353 224-420 (687)
8 PF10835 DUF2573: Protein of u 70.4 19 0.00042 27.1 5.9 61 63-127 6-71 (82)
9 PF09768 Peptidase_M76: Peptid 67.3 6.1 0.00013 35.2 3.3 47 263-321 41-87 (173)
10 PF14247 DUF4344: Domain of un 54.3 9.3 0.0002 35.5 2.3 57 264-321 45-108 (220)
11 PF04228 Zn_peptidase: Putativ 51.1 25 0.00053 34.3 4.7 120 233-355 90-224 (292)
12 KOG2661|consensus 38.5 25 0.00054 34.4 2.5 45 274-321 246-291 (424)
13 TIGR03076 near_not_gcvH Chlamy 23.6 1.9E+02 0.0041 30.3 5.9 70 329-416 211-280 (686)
14 PF05566 Pox_vIL-18BP: Orthopo 22.0 28 0.0006 28.1 -0.2 21 438-458 32-52 (126)
No 1
>KOG3624|consensus
Probab=100.00 E-value=1.2e-73 Score=618.08 Aligned_cols=383 Identities=47% Similarity=0.875 Sum_probs=350.9
Q ss_pred ccchh--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHcCCccCcchHHhHHHHHHHHhhh
Q psy5137 22 DVIVL--SLKTNERAIAKIDFLRVIHNYALWKLVLATVGSHMIGEFQEKKIEFKRILLGVQSEKARWRDCVEWTNKKMGM 99 (476)
Q Consensus 22 ~viv~--~y~~~L~~ll~~t~~~~l~nYl~~~~~~~~~~~~l~~~~~~~~~~~~~~l~g~~~~~~r~~~C~~~~~~~~~~ 99 (476)
.|++. +|+.+|.++|.+|++++|+|||+|+++.. +.+.++... .+|..|+..++..||.
T Consensus 301 ~~~~~~~~y~~~l~~ii~~t~~~~laNYl~~~~~~~-~~~~~~~~~------------------~~~~~Cv~~~~~~~p~ 361 (687)
T KOG3624|consen 301 EVVVFNPDYLVNLSAIIQSTPKRTLANYLIWRLLDD-LLDLLPKPR------------------KRWADCVELVRTLLPL 361 (687)
T ss_pred ceEEecHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-Hhcccchhh------------------HHHHHHHHHHHHhhhh
Confidence 45654 69999999999999999999999999998 666443221 1799999999999999
Q ss_pred hHHhhHHhhcCChhhHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHhHHHhcCCCCCCChhhHHHHhhhcCc
Q psy5137 100 AVGSLFIRDNFNQESKETASEMIKSLREAFNELLDENHWMDNDTRSVAKEKANAMMERIGYPETLTNPVELTKEYLNATL 179 (476)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~i~~I~~~~~~~l~~~~wl~~~~~~~a~~Kl~~m~~~ig~p~~~~~~~~le~~y~~l~~ 179 (476)
+++.+|++.+++.+.+..+.+|++.|+.+|.+.|....||+++||+.|++|++.|+..+|+|++..+...+++.|.++.+
T Consensus 362 a~~~l~~r~~~~~~~~~~~~~m~~~lk~~f~~~l~~~~Wl~~~tr~~a~~K~~~m~~~ig~p~~~~~~~~ld~~y~~l~l 441 (687)
T KOG3624|consen 362 ALGRLYVRNFFDKENKKEVSEMIEDLKKAFEEMLQELDWLDEETRKSAIKKLNAMKKNIGYPDEFLPPGTLDKEYENLKL 441 (687)
T ss_pred hhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHHHHHHcCCHHHhcCchhHHHHHhcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999887777679999999876
Q ss_pred chhhccccchhhhhhcHHHHhhhcCcchhhHhhhhhhhhhccccccccccCcCcHHHHHHHHHHHHHHHHHH-HhcCCCC
Q psy5137 180 TEVDRHDNAYWYHKLTLQQLQDLVPQFNWLQYLSSFLTIKIDSNESLLNITKDHFLENIFNLLKFDAYQNLQ-KLRQPVN 258 (476)
Q Consensus 180 ~~~~~~~~~~~~~~~~i~~l~~~~p~~~w~~~l~~~~~~~i~~~~~~~~~~~~~y~~nl~~~l~~~~~~~l~-~l~~~~~ 258 (476)
...+|+.++..+.+.......+ .+..+..
T Consensus 442 --------------------------------------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 471 (687)
T KOG3624|consen 442 --------------------------------------------------SLDDYDSNLEILLKLQRRRSEQLELRAPVD 471 (687)
T ss_pred --------------------------------------------------ChHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3568999998888887776666 4666666
Q ss_pred CCCCccCcccccceecCCCcccccccccccccccCCCCCchhhhhhHHHHHHHHHHhhhccccccCCCCCCccCCCCHHH
Q psy5137 259 KDQWTTDPAIVNAFYNPNKNEIVLPAGILQPLFYSQSFPKSLNFGGIGVVIGHEITHGFDDKGRQFDKDGNMIEWWNNAT 338 (476)
Q Consensus 259 ~~~w~~~~~~v~~~Y~~~~n~i~~p~g~L~~pf~~~~~p~~~~yg~~g~~l~~ei~~afd~~~~~~d~~g~~~~W~~~~t 338 (476)
+..|...+..++|+|.|..|.|.+|+|+|++|||+.++|.+.|||.+|.+|||||.|+||+.|+.||..|+..+||+.++
T Consensus 472 ~~~~~~~~~~~na~Y~~~~N~i~~pa~ilq~P~f~~~~P~~~nyg~iG~vigHEl~H~FD~~G~~~D~~Gn~~~ww~~~s 551 (687)
T KOG3624|consen 472 PLDWVGSPAQVNAFYSPEKNEIVFPAGLLQPPFFDLSYPDYLNYGGIGFVIGHELTHGFDDQGRQYDESGNLRDWWDTES 551 (687)
T ss_pred ccccccccceeeccccCCCceEEEehhcccCCCCCcccchhhhhHHHHHHHHHHHhhcccccccccCCCcccccCCCHhH
Confidence 77888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccCcccccCCCcchHHHhhHhhhcHHHHHHHHHHHHHhcCCCCC-CCCCCCChhHHHHHHHH
Q psy5137 339 IRAFRERAQCMIDQYSRYKLDEVDMHINGRMTQGENIADNGGLKQSFRAYRKWVAAYGAEPL-LPGLNLTHNQLFFLNYA 417 (476)
Q Consensus 339 ~~~~~~~~~Cl~~qy~~~~~~~~~~~~~~~~~~~e~iaD~~gl~~a~~ay~~~~~~~~~~~~-lpgl~~t~~QlFFi~~a 417 (476)
..+|.++.+|+.+||++|..+ .++||+.|++|||||++|+++||+||+++........+ +||+++|++||||++||
T Consensus 552 ~~~f~~~~qC~~~qy~~y~~~---~~~ng~~t~~EnIAD~~Gl~~A~~AY~~~~~~~~~~~~~lp~l~~t~~QLFFl~~A 628 (687)
T KOG3624|consen 552 ESEFQERAQCLVKQYSNYLDP---RRLNGSKTLGENIADNGGLKLAYRAYKKWKLDLSGEPRELPGLDLTPEQLFFLSYA 628 (687)
T ss_pred HHHHHHHHHHHHHHHhccCCC---cccCCccccchhhcchhhHHHHHHHHHHHHHhccCCCCCCCCCCCChhHHHHHHHH
Confidence 999999999999999999887 56799999999999999999999999988765544333 99999999999999999
Q ss_pred HHHhcCCChhHHHhhhhcCCCCCceeEEEEcCCCChhHHhhcCCCCCCCCCCCCCcccC
Q psy5137 418 QIWCGQMRPEDALTKVRSANHPPGKFRILGPLSNSRDFSEAYNCPLGTRMNPVAKCSVW 476 (476)
Q Consensus 418 ~~~C~~~~~~~~~~~~~~~~h~p~~~RvN~~L~n~~~F~~aF~C~~gs~Mnp~~kC~~w 476 (476)
|.||+..+++.....+.++.|+|+++|||++|+|+|+|++||+||.||+|||++||.+|
T Consensus 629 q~~C~~~~~~~~~~~~~~~~H~~~~~RVng~lsN~~eFa~aF~C~~gS~MnP~~kC~v~ 687 (687)
T KOG3624|consen 629 QFFCSSEDPKKLPESLLTDPHSPESFRVNGVLSNSPEFAEAFNCPIGSPMNPEKKCKVW 687 (687)
T ss_pred HHHhccCChhhhhHHhhcCCCCCcceeEeeeccCcHHHHHhcCCCCCCCCCccccCcCC
Confidence 99999998877777778899999999999999999999999999999999999999999
No 2
>COG3590 PepO Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-72 Score=549.24 Aligned_cols=394 Identities=35% Similarity=0.680 Sum_probs=365.5
Q ss_pred ccccccchh---HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhccCCHHHHHHHHH-HHHHHcCCccCcchHHhHHHHH
Q psy5137 18 ELCYDVIVL---SLKTNERAIAKIDFLRVIHNYALWKLVLATVGSHMIGEFQEKKIE-FKRILLGVQSEKARWRDCVEWT 93 (476)
Q Consensus 18 ~~~~~viv~---~y~~~L~~ll~~t~~~~l~nYl~~~~~~~~~~~~l~~~~~~~~~~-~~~~l~g~~~~~~r~~~C~~~~ 93 (476)
.+|+.+||. .|++.+..++.+++...++.|+.|++++. .+|||+++++..... |.+.|.|.++..+||+..+..+
T Consensus 254 ~~PD~~iv~~~p~y~~~~~~~~~e~~~~~wKawl~~~~~~~-~ap~Lt~dl~~~~f~fy~r~LsG~~E~r~rwKr~~~l~ 332 (654)
T COG3590 254 QLPDKVIVVENPFYLKEFASLLAEENWADWKAWLRWKLIRA-AAPYLTEDLVDEHFDFYGRTLSGQPEARDRWKRAVNLA 332 (654)
T ss_pred CCCCeeEeecCchHHHHHHHHHhcCcHHHHHHHHHHHHHhh-cchhhhhHHHHhhhHHHhhhccCChhhhHHHHHHHHHH
Confidence 377777775 48999999999999999999999999999 999999999999885 6799999999999999999999
Q ss_pred HHHhhhhHHhhHHhhcCChhhHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHhHHHhcCCCCCCChhhHHHH
Q psy5137 94 NKKMGMAVGSLFIRDNFNQESKETASEMIKSLREAFNELLDENHWMDNDTRSVAKEKANAMMERIGYPETLTNPVELTKE 173 (476)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~~~~~~l~~~~wl~~~~~~~a~~Kl~~m~~~ig~p~~~~~~~~le~~ 173 (476)
++.|+.+++..|++.+|++++|..++.+++.++++++.+|++..||.++||.+|+.|++.+...||||+.. +.
T Consensus 333 ~~~~geaiG~~Yv~~~Fpp~aKa~m~~lVa~l~~ayk~Ri~~ldWmtpeTrekAl~KL~~ft~kIGYP~~w-------r~ 405 (654)
T COG3590 333 ERLFGEAIGLLYVKRYFPPEAKADMEELVANLIKAYKARISKLDWMTPETREKALEKLNKFTAKIGYPDPW-------RY 405 (654)
T ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhhccccCHHHHHHHHHHHhccccccCCCchh-------hh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999532 36
Q ss_pred hhhcCcchhhccccchhhhhhcHHHHhhhcCcchhhHhhhhhhhhhccccccccccCcCcHHHHHHHHHHHHHHHHHHHh
Q psy5137 174 YLNATLTEVDRHDNAYWYHKLTLQQLQDLVPQFNWLQYLSSFLTIKIDSNESLLNITKDHFLENIFNLLKFDAYQNLQKL 253 (476)
Q Consensus 174 y~~l~~~~~~~~~~~~~~~~~~i~~l~~~~p~~~w~~~l~~~~~~~i~~~~~~~~~~~~~y~~nl~~~l~~~~~~~l~~l 253 (476)
|+++.+ ..+++++|.++.-++...+.++++
T Consensus 406 y~kL~~--------------------------------------------------~~~sl~~N~~r~~~~~~~~~l~K~ 435 (654)
T COG3590 406 YSKLEI--------------------------------------------------KRDSLYGNVLRASAFNHAHELSKI 435 (654)
T ss_pred hhhhcc--------------------------------------------------CchhHHHHHHHHHHHHHhhhHHHh
Confidence 677766 567999999999999999999999
Q ss_pred cCCCCCCCCccCcccccceecCCCcccccccccccccccCCCCCchhhhhhHHHHHHHHHHhhhccccccCCCCCCccCC
Q psy5137 254 RQPVNKDQWTTDPAIVNAFYNPNKNEIVLPAGILQPLFYSQSFPKSLNFGGIGVVIGHEITHGFDDKGRQFDKDGNMIEW 333 (476)
Q Consensus 254 ~~~~~~~~w~~~~~~v~~~Y~~~~n~i~~p~g~L~~pf~~~~~p~~~~yg~~g~~l~~ei~~afd~~~~~~d~~g~~~~W 333 (476)
++|+++..|.+.|..|||||+|..|.|++|+++||+|||+++.+.+.|||++|.+|||||.|+||+.|++||.+|++.+|
T Consensus 436 ~kPVDr~eW~M~pq~VNAYYnp~~N~IVFPAAILQ~PFfd~ea~~a~NYGgIGaVIgHEI~HgFDdqGakfD~~GnL~dW 515 (654)
T COG3590 436 GKPVDRDEWEMPPQTVNAYYNPQKNEIVFPAAILQAPFFDPEADSAANYGGIGAVIGHEIGHGFDDQGAKFDGDGNLNDW 515 (654)
T ss_pred CCCCchhhcCCCHHHhhhhcCCCCceEeeeHHhcCCCCCCCCcchhhcccCccceehhhhcccccCCccccCCCCcHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcccccCcccccCCCc-chHHHhhHhhhcHHHHHHHHHHHHHhcCCCCCCCCCCCChhHHH
Q psy5137 334 WNNATIRAFRERAQCMIDQYSRYKLDEVDMHINGR-MTQGENIADNGGLKQSFRAYRKWVAAYGAEPLLPGLNLTHNQLF 412 (476)
Q Consensus 334 ~~~~t~~~~~~~~~Cl~~qy~~~~~~~~~~~~~~~-~~~~e~iaD~~gl~~a~~ay~~~~~~~~~~~~lpgl~~t~~QlF 412 (476)
|+++.+.+|.++.+.+..||+.+....... +|. .|++|||||++||..|+.||+..+. ..+.+. +|+..|-|
T Consensus 516 WT~eD~~aF~~~T~~lvaqf~~~e~~~~~~--~g~~lTvgENIaDlGGl~~Al~Ayk~~~~---~~pv~d--g~tg~qrf 588 (654)
T COG3590 516 WTDEDAAAFKERTKKLVAQFDGYEPEGGKD--NGNALTVGENIADLGGLAIALDAYKLSLD---PAPVID--GFTGLQRF 588 (654)
T ss_pred cCHHHHHHHHHHHHHHHHHhcCcccccccc--ccceeeeccccccchhHHHHHHHHHHhcC---Cccccc--ccchHHHH
Confidence 999999999999999999999886443322 455 8999999999999999999998653 222333 38999999
Q ss_pred HHHHHHHHhcCCChhHHHhhhhcCCCCCceeEEEEcCCCChhHHhhcCCCCCCCCC--CCCCcccC
Q psy5137 413 FLNYAQIWCGQMRPEDALTKVRSANHPPGKFRILGPLSNSRDFSEAYNCPLGTRMN--PVAKCSVW 476 (476)
Q Consensus 413 Fi~~a~~~C~~~~~~~~~~~~~~~~h~p~~~RvN~~L~n~~~F~~aF~C~~gs~Mn--p~~kC~~w 476 (476)
|++|||.|..+.+++....++..|+|+|+++|||+++.|+++|.+||+|++|++|. |++|-.||
T Consensus 589 F~~wAqiWR~K~r~e~~~~~l~~DpHsP~~fR~Ng~~~N~~~FyeaFdVke~D~myr~pe~Rv~IW 654 (654)
T COG3590 589 FLNWAQIWRMKARPEEQQMRLSVDPHSPAEFRVNGPVRNMDEFYEAFDVKEGDAMYRAPEERVVIW 654 (654)
T ss_pred HHHHHHHHhhccCHHHHHHHHccCCCCCceeeccCCCCChHHHHHHcCCCCCcccccChhhccccC
Confidence 99999999999999999999999999999999999999999999999999999997 88999999
No 3
>PF01431 Peptidase_M13: Peptidase family M13 This is family M13 in the peptidase classification. ; InterPro: IPR018497 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A 3DWB_A 3ZUK_A.
Probab=100.00 E-value=2.2e-52 Score=387.67 Aligned_cols=203 Identities=49% Similarity=0.979 Sum_probs=164.1
Q ss_pred cceecCCCcccccccccccccccCCCCCchhhhhhHHHHHHHHHHhhhccccccCCCCCCccCCCCHHHHHHHHHHHHHH
Q psy5137 270 NAFYNPNKNEIVLPAGILQPLFYSQSFPKSLNFGGIGVVIGHEITHGFDDKGRQFDKDGNMIEWWNNATIRAFRERAQCM 349 (476)
Q Consensus 270 ~~~Y~~~~n~i~~p~g~L~~pf~~~~~p~~~~yg~~g~~l~~ei~~afd~~~~~~d~~g~~~~W~~~~t~~~~~~~~~Cl 349 (476)
||+|.|..|.|.+|+|+|++|||+.+.|.+.+||++|.+|||||.|+||..|..||.+|+..+||++.+++.|.++.+|+
T Consensus 1 na~Y~~~~N~i~ip~~~l~~P~f~~~~p~~~~yg~lG~ilahel~hafd~~g~~~D~~g~~~~wWs~~~~~~~~~~~~Cl 80 (206)
T PF01431_consen 1 NAYYSPRFNSIVIPAGILQPPFFDPNYPPALNYGGLGFILAHELMHAFDPEGINYDEDGNLRNWWSEESRSNFKERAQCL 80 (206)
T ss_dssp --EEETTTTEEEEEGGGSSTTT--TTS-HHHHHHTHHHHHHHHHHHCTSTTGGGB-TTS-BS--S-HHHHHHHHHHHHHH
T ss_pred CCCCCcccCEEEecHHHhCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHhhcCcccccccccchhhHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccCcccc--cCCCcchHHHhhHhhhcHHHHHHHHHHHHHhcCCCCCCCCCC-CChhHHHHHHHHHHHhcCCCh
Q psy5137 350 IDQYSRYKLDEVDM--HINGRMTQGENIADNGGLKQSFRAYRKWVAAYGAEPLLPGLN-LTHNQLFFLNYAQIWCGQMRP 426 (476)
Q Consensus 350 ~~qy~~~~~~~~~~--~~~~~~~~~e~iaD~~gl~~a~~ay~~~~~~~~~~~~lpgl~-~t~~QlFFi~~a~~~C~~~~~ 426 (476)
.+||.++..+.... .++|..++.|+|||++||++||+||++ ....+.++||++ +|++||||++||+.||+..++
T Consensus 81 ~~qy~~~~~~~~~~~~~~~~~~~~~E~iaD~~gl~~a~~ay~~---~~~~~~~l~~~~~~t~~QlFF~~~a~~~C~~~~~ 157 (206)
T PF01431_consen 81 RDQYSNYSVPEGNKSVSLNGSDTLNENIADNAGLRLAYRAYRK---KSSNEERLPGLEGLTPDQLFFISFAQSFCEKMSP 157 (206)
T ss_dssp HHHHHT-BCGGGTTCSB--TTTTHHHHHHHHHHHHHHHHHHHH---HHTTT-B-TTCTTB-HHHHHHHHHHHHT-EEE-H
T ss_pred HHHHhcccccccccccccchHHHHHHHHHHHHhHHHHHHHHhh---cccccccccccccchhHHHHHHHHHHHHhcCcch
Confidence 99999887655432 568999999999999999999999998 234577899995 999999999999999998887
Q ss_pred hHHHhhhhcCCCCCceeEEEEcCCCChhHHhhcCCCCCCCCCCCCCccc
Q psy5137 427 EDALTKVRSANHPPGKFRILGPLSNSRDFSEAYNCPLGTRMNPVAKCSV 475 (476)
Q Consensus 427 ~~~~~~~~~~~h~p~~~RvN~~L~n~~~F~~aF~C~~gs~Mnp~~kC~~ 475 (476)
.....+...+.|+|+++|||+||+|+|+|++||+|+.||+|||.+||++
T Consensus 158 ~~~~~~~~~~~h~p~~~RvN~~L~n~~~Fa~aF~C~~gs~Mnp~~kC~~ 206 (206)
T PF01431_consen 158 ESVYRQLQTDPHSPARFRVNGPLSNMPEFAEAFNCPSGSPMNPKKKCRC 206 (206)
T ss_dssp HHHHHHHHH-SS--HHHHHHHHHHT-HHHHHHHT--TTSTTS-SSGG--
T ss_pred hhhhhhhhcCCCCchHHHHHHHHhcCHHHHHHcCCCCCCCCCCCCCCcC
Confidence 7666677789999999999999999999999999999999999999985
No 4
>PF05649 Peptidase_M13_N: Peptidase family M13 This is family M13 in the peptidase classification. ; InterPro: IPR008753 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0008237 metallopeptidase activity, 0006508 proteolysis; PDB: 3DWB_A 3ZUK_A 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A.
Probab=99.82 E-value=1.4e-19 Score=184.33 Aligned_cols=152 Identities=32% Similarity=0.585 Sum_probs=128.7
Q ss_pred HHhhhcCCCcccccccchh--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHcCCccCcch
Q psy5137 8 ALTALVSPASELCYDVIVL--SLKTNERAIAKIDFLRVIHNYALWKLVLATVGSHMIGEFQEKKIEFKRILLGVQSEKAR 85 (476)
Q Consensus 8 ~~~~~~~~~~~~~~~viv~--~y~~~L~~ll~~t~~~~l~nYl~~~~~~~~~~~~l~~~~~~~~~~~~~~l~g~~~~~~r 85 (476)
.|.+++.+ ..-+++|+|. +||++|.++++++++++|+|||+|+++.+ ++++++.+++.....+...+.|.....++
T Consensus 237 ~l~~~~~~-~~~~~~V~v~~~~y~~~l~~ll~~~~~~~l~nYl~~~~i~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 314 (390)
T PF05649_consen 237 YLKALFGE-VTESDEVIVRSPDYFKKLSELLKQTSKETLANYLGWRLIRE-LSPYLSSELRDLYFEFYRTLSGVEESRPR 314 (390)
T ss_dssp HHHHHCCC-CCTTSEEEES-HHHHHHHHHHHHHS-HHHHHHHHHHHHHHH-HGGGS-HHHHHHHHHHHTHHH--SS---H
T ss_pred HHHHHccc-cCCCceEEEcCcHHHHHHHHHHHhCCcHHHHHHHHHHHHHH-HHhhccHHHHHHHHHHHHHhcCCccchhh
Confidence 45666665 3334477776 59999999999999999999999999999 99999999999999999899999988999
Q ss_pred HHhHHHHHHHHhhhhHHhhHHhhcCChhhHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHhHHHhcCC
Q psy5137 86 WRDCVEWTNKKMGMAVGSLFIRDNFNQESKETASEMIKSLREAFNELLDENHWMDNDTRSVAKEKANAMMERIGYP 161 (476)
Q Consensus 86 ~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~~~~~~l~~~~wl~~~~~~~a~~Kl~~m~~~ig~p 161 (476)
|..|+..+++.||.+++++|++.+++.+.++.+.+|++.|+++|...|.+.+||++++|..|++|+++|+..||||
T Consensus 315 ~~~C~~~~~~~l~~~~~~~y~~~~~~~~~~~~v~~~~~~ik~~f~~~i~~~~Wld~~tk~~a~~Kl~~m~~~iGyP 390 (390)
T PF05649_consen 315 WQRCVRHVEKLLPFALGRLYVRRYFDKENKKEVEDMVENIKEAFRERIEESDWLDEETKKEAIEKLNNMKLNIGYP 390 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHCT-TTS-HHHHHHHHHHHHH-EEEEES-
T ss_pred HHHHHHHHHHHHHHHHHhhHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998
No 5
>COG3590 PepO Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=8.6e-15 Score=145.97 Aligned_cols=256 Identities=14% Similarity=0.225 Sum_probs=194.0
Q ss_pred hHHhhcCChhhHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHH----HHHHHhHHHhcCCCC-------CCChhhHHH
Q psy5137 104 LFIRDNFNQESKETASEMIKSLREAFNELLDENHWMDNDTRSVAK----EKANAMMERIGYPET-------LTNPVELTK 172 (476)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~i~~I~~~~~~~l~~~~wl~~~~~~~a~----~Kl~~m~~~ig~p~~-------~~~~~~le~ 172 (476)
.++..++++|.++...+++ .+.++. ..|+..++|.++.....+ +-+.+|...+|..+. +..+..+|.
T Consensus 132 ~~f~~~vspD~kds~~~v~-~~sq~G-lgLPD~~YY~de~~~e~l~ay~~hv~rml~~~~~~~~~~d~a~~A~~v~a~et 209 (654)
T COG3590 132 NPFGFSVSPDFKDSTRYVL-YFSQSG-LGLPDTTYYRDEQHAELLAAYKEHVARMLGLFGFSEEEEDAAKHALRVVALET 209 (654)
T ss_pred CCceeeeccccccchhhee-eeccCC-CCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHH
Confidence 4567889999999988888 888866 788999998776433332 224677677777432 234677999
Q ss_pred HhhhcCcchhhccccchhhhhhcHHHHhhhcCcchhhHhhhhhhhhhccccccccccCcCcHHHHHHHHHHHHHHHHHH-
Q psy5137 173 EYLNATLTEVDRHDNAYWYHKLTLQQLQDLVPQFNWLQYLSSFLTIKIDSNESLLNITKDHFLENIFNLLKFDAYQNLQ- 251 (476)
Q Consensus 173 ~y~~l~~~~~~~~~~~~~~~~~~i~~l~~~~p~~~w~~~l~~~~~~~i~~~~~~~~~~~~~y~~nl~~~l~~~~~~~l~- 251 (476)
.+++...+.++++|-.+.||++++.+|+...|..+|..++++++.. + +++++...+.|++.+..++....-..++
T Consensus 210 ~lA~~~~~~~~~rd~~~~Yn~~tf~~l~~~~p~~~w~~~~~~~G~~---P-D~~iv~~~p~y~~~~~~~~~e~~~~~wKa 285 (654)
T COG3590 210 KLANASWEVVKYRDLYHTYNPATFAELQPELPGDDWSLLFSALGQL---P-DKVIVVENPFYLKEFASLLAEENWADWKA 285 (654)
T ss_pred HHhhhhhHHHHHHhhhcCcChhhHHHhcccCCCccHHHHHHHhcCC---C-CeeEeecCchHHHHHHHHHhcCcHHHHHH
Confidence 9999999999999999999999999999999999999999998841 2 2455545777878887776553322211
Q ss_pred ----------------------------Hh-cCCCCCCCCccCcccccceecCCCcccccccccccccccCCCCCchhhh
Q psy5137 252 ----------------------------KL-RQPVNKDQWTTDPAIVNAFYNPNKNEIVLPAGILQPLFYSQSFPKSLNF 302 (476)
Q Consensus 252 ----------------------------~l-~~~~~~~~w~~~~~~v~~~Y~~~~n~i~~p~g~L~~pf~~~~~p~~~~y 302 (476)
.| |.+..++||+.....++ +.++-.+|.+ |++.+||+.+|
T Consensus 286 wl~~~~~~~~ap~Lt~dl~~~~f~fy~r~LsG~~E~r~rwKr~~~l~~-------~~~geaiG~~---Yv~~~Fpp~aK- 354 (654)
T COG3590 286 WLRWKLIRAAAPYLTEDLVDEHFDFYGRTLSGQPEARDRWKRAVNLAE-------RLFGEAIGLL---YVKRYFPPEAK- 354 (654)
T ss_pred HHHHHHHhhcchhhhhHHHHhhhHHHhhhccCChhhhHHHHHHHHHHH-------HHHHHHHHHH---HHHHhCChHHH-
Confidence 11 34556789988888877 8899999999 99999999999
Q ss_pred hhHHHHHHHHHHhhhccccccCCCCCCccCCCCHHHHHHHHHHHHHHHHH--hcccccCcccccCCCcchHHHhhHhhhc
Q psy5137 303 GGIGVVIGHEITHGFDDKGRQFDKDGNMIEWWNNATIRAFRERAQCMIDQ--YSRYKLDEVDMHINGRMTQGENIADNGG 380 (476)
Q Consensus 303 g~~g~~l~~ei~~afd~~~~~~d~~g~~~~W~~~~t~~~~~~~~~Cl~~q--y~~~~~~~~~~~~~~~~~~~e~iaD~~g 380 (476)
.....++..|+.++..++ ..++||+++|++++++|+..+..+ |+.--..-.++ ..++..+.+|.--...
T Consensus 355 -a~m~~lVa~l~~ayk~Ri-------~~ldWmtpeTrekAl~KL~~ft~kIGYP~~wr~y~kL-~~~~~sl~~N~~r~~~ 425 (654)
T COG3590 355 -ADMEELVANLIKAYKARI-------SKLDWMTPETREKALEKLNKFTAKIGYPDPWRYYSKL-EIKRDSLYGNVLRASA 425 (654)
T ss_pred -HHHHHHHHHHHHHHHHHh-------hhccccCHHHHHHHHHHHhccccccCCCchhhhhhhh-ccCchhHHHHHHHHHH
Confidence 999999999999999998 468999999999999999999877 55211110011 1344567788766555
Q ss_pred HHHHH
Q psy5137 381 LKQSF 385 (476)
Q Consensus 381 l~~a~ 385 (476)
+..++
T Consensus 426 ~~~~~ 430 (654)
T COG3590 426 FNHAH 430 (654)
T ss_pred HHHhh
Confidence 55555
No 6
>PF05649 Peptidase_M13_N: Peptidase family M13 This is family M13 in the peptidase classification. ; InterPro: IPR008753 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0008237 metallopeptidase activity, 0006508 proteolysis; PDB: 3DWB_A 3ZUK_A 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A.
Probab=99.28 E-value=8e-14 Score=141.85 Aligned_cols=240 Identities=15% Similarity=0.267 Sum_probs=158.7
Q ss_pred HHhHHHHHHHHhhhhHHhhHHhhcCChhhHHHHHHHHHHHHHHHHhhhhhCCCCCHHH-----HHHHHHHHHHhHHHhcC
Q psy5137 86 WRDCVEWTNKKMGMAVGSLFIRDNFNQESKETASEMIKSLREAFNELLDENHWMDNDT-----RSVAKEKANAMMERIGY 160 (476)
Q Consensus 86 ~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~~~~~~l~~~~wl~~~~-----~~~a~~Kl~~m~~~ig~ 160 (476)
|..-+..+...++. ..+++..+..+..+....++ .|.++- ..++...++.... .......+..+....|.
T Consensus 107 ~~~~l~~l~~~~~~---~~l~~~~v~~d~~~~~~~~l-~i~~~~-~~l~~~~~~~~~~~~~~~~~~y~~~v~~~l~~~g~ 181 (390)
T PF05649_consen 107 LLDTLARLSRRYGI---DPLFSLYVDPDPQNPSKYIL-YIDPPE-LGLPSKEYYRDPHSSKEYLQAYREYVREVLKLLGV 181 (390)
T ss_dssp HHHHHHHHHHTC------SSSEEEEEEETTEEEEEEE-EEEE----SSSSGGGGCTCGGCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHhhccc---cceeeeEeeccccchheeEe-ecccCC-CCCcchHHhhcchhhHHHHHHHHHHHHHHHhhccC
Confidence 44444444444343 46677767666554444444 444422 3444444544321 22223333444444565
Q ss_pred C-----CCCCChhhHHHHhhhcCcchhhccccchhhhhhcHHHHhhhcCcchhhHhhhhhhhhhccccccccccCcCcHH
Q psy5137 161 P-----ETLTNPVELTKEYLNATLTEVDRHDNAYWYHKLTLQQLQDLVPQFNWLQYLSSFLTIKIDSNESLLNITKDHFL 235 (476)
Q Consensus 161 p-----~~~~~~~~le~~y~~l~~~~~~~~~~~~~~~~~~i~~l~~~~p~~~w~~~l~~~~~~~i~~~~~~~~~~~~~y~ 235 (476)
+ +.+.++..||..++.+..+..+++++...|++++++||++.+|.++|..+|+.++.. ++.++.|++ ..++||
T Consensus 182 ~~~~~~~~~~~i~~~e~~L~~~~~~~~~~~~~~~~~~~~tl~eL~~~~p~i~w~~~l~~~~~~-~~~~~~V~v-~~~~y~ 259 (390)
T PF05649_consen 182 DDDEASKLADDIVKFEKQLAKLSSEDEERRDPQKLYNPMTLSELQSQYPQIDWDRYLKALFGE-VTESDEVIV-RSPDYF 259 (390)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHS--GGGCT-HHHH-EEEEHHHHHHHSTTS-HHHHHHHHCCC-CCTTSEEEE-S-HHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhhhHhhccHHHhcCcccHHHHHHHHhhhhHHHHHHHHccc-cCCCceEEE-cCcHHH
Confidence 3 234567889999999988888888889999999999999999999999999999976 666677777 478999
Q ss_pred HHHHHHHHHHHHHHHHH-----------------------------hcCCCCCCCCccCcccccceecCCCccccccccc
Q psy5137 236 ENIFNLLKFDAYQNLQK-----------------------------LRQPVNKDQWTTDPAIVNAFYNPNKNEIVLPAGI 286 (476)
Q Consensus 236 ~nl~~~l~~~~~~~l~~-----------------------------l~~~~~~~~w~~~~~~v~~~Y~~~~n~i~~p~g~ 286 (476)
.++..+++.+..+.+.. .|.+...++|..|...+. ..|..++|.
T Consensus 260 ~~l~~ll~~~~~~~l~nYl~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~C~~~~~-------~~l~~~~~~ 332 (390)
T PF05649_consen 260 KKLSELLKQTSKETLANYLGWRLIRELSPYLSSELRDLYFEFYRTLSGVEESRPRWQRCVRHVE-------KLLPFALGR 332 (390)
T ss_dssp HHHHHHHHHS-HHHHHHHHHHHHHHHHGGGS-HHHHHHHHHHHTHHH--SS---HHHHHHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCCccchhhHHHHHHHHH-------HHHHHHHHh
Confidence 99999998877765431 122334558888998887 778888888
Q ss_pred ccccccCCCCCchhhhhhHHHHHHHHHHhhhccccccCCCCCCccCCCCHHHHHHHHHHHHHHHH
Q psy5137 287 LQPLFYSQSFPKSLNFGGIGVVIGHEITHGFDDKGRQFDKDGNMIEWWNNATIRAFRERAQCMID 351 (476)
Q Consensus 287 L~~pf~~~~~p~~~~yg~~g~~l~~ei~~afd~~~~~~d~~g~~~~W~~~~t~~~~~~~~~Cl~~ 351 (476)
+ |++..++...+ ..+..|+.+|+++|...+ ...+|||++||+++.+|++-+..
T Consensus 333 ~---y~~~~~~~~~~--~~v~~~~~~ik~~f~~~i-------~~~~Wld~~tk~~a~~Kl~~m~~ 385 (390)
T PF05649_consen 333 L---YVRRYFDKENK--KEVEDMVENIKEAFRERI-------EESDWLDEETKKEAIEKLNNMKL 385 (390)
T ss_dssp H---HHHHH--CCHH--HHHHHHHHHHHHHHHHHH-------CT-TTS-HHHHHHHHHHHHH-EE
T ss_pred h---HhhhcCchhHH--HHHHHHHHHHHHHHHHHH-------hhCCCCCHHHHHHHHHHHHhhhh
Confidence 8 88888887777 889999999999999988 45899999999999999987753
No 7
>KOG3624|consensus
Probab=98.73 E-value=1.2e-08 Score=111.38 Aligned_cols=181 Identities=18% Similarity=0.330 Sum_probs=144.4
Q ss_pred HHhHHHhcCC-----CCCCChhhHHHHhhhcCcchhhccccchhhhhhcHHHHhhhcCcchhhHhhhhhhhhhccccccc
Q psy5137 152 NAMMERIGYP-----ETLTNPVELTKEYLNATLTEVDRHDNAYWYHKLTLQQLQDLVPQFNWLQYLSSFLTIKIDSNESL 226 (476)
Q Consensus 152 ~~m~~~ig~p-----~~~~~~~~le~~y~~l~~~~~~~~~~~~~~~~~~i~~l~~~~p~~~w~~~l~~~~~~~i~~~~~~ 226 (476)
..+...+|.+ ..+..+..||..+++...+...+++....++.+++++|++.+|.++|..++..++......+ .+
T Consensus 224 ~~~~~~~g~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~ 302 (687)
T KOG3624|consen 224 NELLQLLGLDSDEAEEYARLVIELERQLANITKPDENRRELQALYNSVNLAELQKKFPSIDWKQLLRSVLGEILPHN-EV 302 (687)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHcccccHHHHHHhcccccHHHHhhhhccccccCC-ce
Confidence 3334456643 23456778999999998887778899999999999999999999999999999987444333 45
Q ss_pred cccCcCcHHHHHHHHHHHHHHHHHHHh---------cCCCC--CCCCccCcccccceecCCCcccccccccccccccCCC
Q psy5137 227 LNITKDHFLENIFNLLKFDAYQNLQKL---------RQPVN--KDQWTTDPAIVNAFYNPNKNEIVLPAGILQPLFYSQS 295 (476)
Q Consensus 227 ~~~~~~~y~~nl~~~l~~~~~~~l~~l---------~~~~~--~~~w~~~~~~v~~~Y~~~~n~i~~p~g~L~~pf~~~~ 295 (476)
++ ...+|+.++..+++.+.++++..+ ..... ..+|..|...+. ..+..++|.+ |+...
T Consensus 303 ~~-~~~~y~~~l~~ii~~t~~~~laNYl~~~~~~~~~~~~~~~~~~~~~Cv~~~~-------~~~p~a~~~l---~~r~~ 371 (687)
T KOG3624|consen 303 VV-FNPDYLVNLSAIIQSTPKRTLANYLIWRLLDDLLDLLPKPRKRWADCVELVR-------TLLPLALGRL---YVRNF 371 (687)
T ss_pred EE-ecHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH-------HhhhhhhHHH---HHHHh
Confidence 55 377899999999999988876642 11111 126889998887 6788888888 88888
Q ss_pred CCchhhhhhHHHHHHHHHHhhhccccccCCCCCCccCCCCHHHHHHHHHHHHHHHHHh
Q psy5137 296 FPKSLNFGGIGVVIGHEITHGFDDKGRQFDKDGNMIEWWNNATIRAFRERAQCMIDQY 353 (476)
Q Consensus 296 ~p~~~~yg~~g~~l~~ei~~afd~~~~~~d~~g~~~~W~~~~t~~~~~~~~~Cl~~qy 353 (476)
+.+..+ .....|.++|+.+|.+.+ ...+||+++||+.+++|+.-+..+.
T Consensus 372 ~~~~~~--~~~~~m~~~lk~~f~~~l-------~~~~Wl~~~tr~~a~~K~~~m~~~i 420 (687)
T KOG3624|consen 372 FDKENK--KEVSEMIEDLKKAFEEML-------QELDWLDEETRKSAIKKLNAMKKNI 420 (687)
T ss_pred cChhHH--HHHHHHHHHHHHHHHHHH-------HhCcccCHHHHHHHHHHHHHHHHHc
Confidence 888777 888999999999999988 3489999999999999999999873
No 8
>PF10835 DUF2573: Protein of unknown function (DUF2573); InterPro: IPR020393 This entry contains proteins with no known function.
Probab=70.41 E-value=19 Score=27.07 Aligned_cols=61 Identities=21% Similarity=0.350 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHcCCccC-----cchHHhHHHHHHHHhhhhHHhhHHhhcCChhhHHHHHHHHHHHHH
Q psy5137 63 GEFQEKKIEFKRILLGVQSE-----KARWRDCVEWTNKKMGMAVGSLFIRDNFNQESKETASEMIKSLRE 127 (476)
Q Consensus 63 ~~~~~~~~~~~~~l~g~~~~-----~~r~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~ 127 (476)
..|..+..+|...|.|.+.+ ...| .-+..+.+.||...... ..-.++.+..++.+|..|++
T Consensus 6 eq~dgLveKytELL~Ge~~~e~~EkVk~W-~lYshiaKsMPpL~kHW---N~~~PeaK~~ik~li~~Ik~ 71 (82)
T PF10835_consen 6 EQFDGLVEKYTELLLGETSPEMKEKVKQW-ALYSHIAKSMPPLAKHW---NGTYPEAKEEIKELIEEIKQ 71 (82)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHHHHHHHhCcHHHHhh---cccCchHHHHHHHHHHHHHH
Confidence 45566777888888887654 2335 22346788888743321 22346889999999999887
No 9
>PF09768 Peptidase_M76: Peptidase M76 family; InterPro: IPR019165 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. Mitochondrial inner membrane protease ATP23 has two roles in the assembly of mitochondrial ATPase. Firstly, it acts as a protease that removes the N-terminal 10 residues of mitochondrial ATPase CF(0) subunit 6 (ATP6) at the intermembrane space side. Secondly, it is involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of ATP6 with the subunit 9 ring [, ].; GO: 0004222 metalloendopeptidase activity
Probab=67.26 E-value=6.1 Score=35.18 Aligned_cols=47 Identities=23% Similarity=0.354 Sum_probs=33.5
Q ss_pred ccCcccccceecCCCcccccccccccccccCCCCCchhhhhhHHHHHHHHHHhhhcccc
Q psy5137 263 TTDPAIVNAFYNPNKNEIVLPAGILQPLFYSQSFPKSLNFGGIGVVIGHEITHGFDDKG 321 (476)
Q Consensus 263 ~~~~~~v~~~Y~~~~n~i~~p~g~L~~pf~~~~~p~~~~yg~~g~~l~~ei~~afd~~~ 321 (476)
..|+..+...|+|..+.|.+=...+ .+.+.+-..|+|||+||||.--
T Consensus 41 ~~C~~~~~Ggf~p~~~~I~lC~N~~------------~~~~~l~~~l~HELIHayD~cr 87 (173)
T PF09768_consen 41 EPCDSSVSGGFDPSKKGIVLCQNRI------------RSQGHLEDTLTHELIHAYDHCR 87 (173)
T ss_pred EECcCCCcCCccCCCCCEEEeeCCC------------CCHHHHHHHHHHHHHHHHHHHh
Confidence 3577778888998666666533333 2334777999999999999754
No 10
>PF14247 DUF4344: Domain of unknown function (DUF4344)
Probab=54.33 E-value=9.3 Score=35.48 Aligned_cols=57 Identities=23% Similarity=0.362 Sum_probs=39.6
Q ss_pred cCcccccceecCCCccccccccccccc---ccCCCCCch----hhhhhHHHHHHHHHHhhhcccc
Q psy5137 264 TDPAIVNAFYNPNKNEIVLPAGILQPL---FYSQSFPKS----LNFGGIGVVIGHEITHGFDDKG 321 (476)
Q Consensus 264 ~~~~~v~~~Y~~~~n~i~~p~g~L~~p---f~~~~~p~~----~~yg~~g~~l~~ei~~afd~~~ 321 (476)
.| ...|+||+|..+.|.||..++..- |-+.+.+.. .-.|.+-+++.||+.||+....
T Consensus 45 ~C-Ge~nA~ydPe~~~I~iCYEf~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~HE~GHAlI~~~ 108 (220)
T PF14247_consen 45 EC-GEDNAFYDPENRSITICYEFVDEILDRFAKANDPDEEYGQAAIGNVLFTLYHELGHALIDDL 108 (220)
T ss_pred ec-CCCCCccCCCCCEEEECHHHHHHHHHHHHhCCcCcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37 788999999999999999877432 223232221 2345677888999999987643
No 11
>PF04228 Zn_peptidase: Putative neutral zinc metallopeptidase; InterPro: IPR007343 Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=51.12 E-value=25 Score=34.25 Aligned_cols=120 Identities=18% Similarity=0.252 Sum_probs=59.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCCCCC---C-----ccC---cccccceecCCCcccccccccccccccCCCCCchhh
Q psy5137 233 HFLENIFNLLKFDAYQNLQKLRQPVNKDQ---W-----TTD---PAIVNAFYNPNKNEIVLPAGILQPLFYSQSFPKSLN 301 (476)
Q Consensus 233 ~y~~nl~~~l~~~~~~~l~~l~~~~~~~~---w-----~~~---~~~v~~~Y~~~~n~i~~p~g~L~~pf~~~~~p~~~~ 301 (476)
.|+..++.-+.......+.+.+.+..++. | ..| ...+.|||.|..++|+++++.++.. ...+...-.
T Consensus 90 ~~~~~~l~~le~~W~~~~~~~g~~y~~P~lv~~~~~~~t~CG~a~s~~gpFYCp~D~tIYlD~~f~~~L--~~~~ga~G~ 167 (292)
T PF04228_consen 90 RFVSAVLACLEDVWTPQFPQAGLPYRPPKLVLFSGSVQTGCGTASSATGPFYCPADQTIYLDLSFFDEL--QQRFGASGD 167 (292)
T ss_pred HHHHHHhccHHHHHHHHHHHcCCCCCCCEEEEeCCCCCCCCCCCcCCCCCEeCCCCCEEEechHHHHHH--HHHhCCccH
Confidence 46666655555555556665544433221 1 125 2456789999999999998754211 111110001
Q ss_pred hhhHHHHHHHHHHhhhccccccCCCCCCccCCCC----HHHHHHHHHHHHHHHHHhcc
Q psy5137 302 FGGIGVVIGHEITHGFDDKGRQFDKDGNMIEWWN----NATIRAFRERAQCMIDQYSR 355 (476)
Q Consensus 302 yg~~g~~l~~ei~~afd~~~~~~d~~g~~~~W~~----~~t~~~~~~~~~Cl~~qy~~ 355 (476)
+ ....+||||.-|..-...-..+.......=.+ .+-..+..-.++|+.--|-.
T Consensus 168 ~-a~ayVlAHEyGHHVQ~l~Gil~~~~~~~~~~~~~~~~~~svr~ELQADC~AGvw~~ 224 (292)
T PF04228_consen 168 F-AQAYVLAHEYGHHVQNLLGILDAVRQAQQGRSPAEANELSVRLELQADCFAGVWAG 224 (292)
T ss_pred H-HHHHHHHHHHHHHHHHHhhhHHHHHHHhhccCccccchHHHHHHHHHHHHHHHHhh
Confidence 1 34456777777776544311110000000001 11223566778999877644
No 12
>KOG2661|consensus
Probab=38.52 E-value=25 Score=34.42 Aligned_cols=45 Identities=31% Similarity=0.575 Sum_probs=29.5
Q ss_pred cCCCcccccccccccccccCCC-CCchhhhhhHHHHHHHHHHhhhcccc
Q psy5137 274 NPNKNEIVLPAGILQPLFYSQS-FPKSLNFGGIGVVIGHEITHGFDDKG 321 (476)
Q Consensus 274 ~~~~n~i~~p~g~L~~pf~~~~-~p~~~~yg~~g~~l~~ei~~afd~~~ 321 (476)
+|..|.+.+|.|-+ |+=.+ .|.-..-.++++++|||+.|+...+.
T Consensus 246 dPipNAFvLPgGKv---fVFtgiLn~ck~ddglAtvLgHE~aHaVarH~ 291 (424)
T KOG2661|consen 246 DPIPNAFVLPGGKV---FVFTGILNSCKDDDGLATVLGHEIAHAVARHA 291 (424)
T ss_pred CCCCceeeccCCeE---EEEechhhcccChHHHHHHHHHHHHHHHHHHH
Confidence 45557777777766 54333 23333334889999999999987654
No 13
>TIGR03076 near_not_gcvH Chlamydial GcvH-like protein upstream region protein. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed so far only in the Chlamydiae, always as part of a two-gene operon, upstream of the homolog of GcvH. Its function is unknown.
Probab=23.60 E-value=1.9e+02 Score=30.32 Aligned_cols=70 Identities=21% Similarity=0.286 Sum_probs=48.0
Q ss_pred CccCCCCHHHHHHHHHHHHHHHHHhcccccCcccccCCCcchHHHhhHhhhcHHHHHHHHHHHHHhcCCCCCCCCCCCCh
Q psy5137 329 NMIEWWNNATIRAFRERAQCMIDQYSRYKLDEVDMHINGRMTQGENIADNGGLKQSFRAYRKWVAAYGAEPLLPGLNLTH 408 (476)
Q Consensus 329 ~~~~W~~~~t~~~~~~~~~Cl~~qy~~~~~~~~~~~~~~~~~~~e~iaD~~gl~~a~~ay~~~~~~~~~~~~lpgl~~t~ 408 (476)
+..||.++.--.+..+.+-|+.+.-..+. +..|+.|..+|. .+-|-.||.+..+ -|++++|.
T Consensus 211 ~i~DWFg~~yvs~v~e~ll~fi~EQkk~v---------~mps~~EA~~Df--~dkaq~af~~~sk-------~~~~~ls~ 272 (686)
T TIGR03076 211 NIKDWFGDAYVSAAVEALLRFIDEQKKNI---------AMPSLKEAQQDF--YDKAKQAFTKLSK-------HAEFNLTF 272 (686)
T ss_pred cHHHhhhHHHHHHHHHHHHHHHHHhcccc---------cCCcHHHHHHHH--HHHHHHHHHHhcc-------CCCcCcCH
Confidence 46799999888888888888876533322 123688988886 4778888876422 26777788
Q ss_pred hHHHHHHH
Q psy5137 409 NQLFFLNY 416 (476)
Q Consensus 409 ~QlFFi~~ 416 (476)
+|.|=-.|
T Consensus 273 ~e~v~s~~ 280 (686)
T TIGR03076 273 DQFVSSYF 280 (686)
T ss_pred HHHHHHHH
Confidence 88664333
No 14
>PF05566 Pox_vIL-18BP: Orthopoxvirus interleukin 18 binding protein; InterPro: IPR008791 Interleukin-18 (IL-18) is a proinflammatory cytokine that plays a key role in the activation of natural killer and T helper 1 cell responses principally by inducing interferon-gamma (IFN-gamma). Several poxvirus genes encode proteins with sequence similarity to IL-18BPs. It has been shown that vaccinia, ectromelia and cowpox viruses secrete from infected cells a soluble IL-18BP (vIL-18BP) that may modulate the host antiviral response. The expression of vIL-18BPs by distinct poxvirus genera that cause local or general viral dissemination, or persistent or acute infections in the host, emphasises the importance of IL-18 in response to viral infections [].; PDB: 3F62_A.
Probab=22.04 E-value=28 Score=28.09 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=15.9
Q ss_pred CCCceeEEEEcCCCChhHHhh
Q psy5137 438 HPPGKFRILGPLSNSRDFSEA 458 (476)
Q Consensus 438 h~p~~~RvN~~L~n~~~F~~a 458 (476)
.+...+||-+.++.+|+|+-.
T Consensus 32 TSs~~fhCsGcv~~~peFSym 52 (126)
T PF05566_consen 32 TSSEEFHCSGCVKYMPEFSYM 52 (126)
T ss_dssp EETTEEEEEEEE-SSTTS-EE
T ss_pred eccceEEEechhhhCccceeE
Confidence 456789999999999999753
Done!