RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5137
(476 letters)
>gnl|CDD|189000 cd08662, M13, Peptidase family M13 includes neprilysin,
endothelin-converting enzyme I. M13 family of
metallopeptidases includes neprilysin (neutral
endopeptidase, NEP, enkephalinase, CD10, CALLA, EC
3.4.24.11), endothelin-converting enzyme I (ECE-1, EC
3.4.24.71), erythrocyte surface antigen KELL (ECE-3),
phosphate-regulating gene on the X chromosome (PHEX),
soluble secreted endopeptidase (SEP), and damage-induced
neuronal endopeptidase (DINE)/X-converting enzyme (XCE).
These proteins consist of a short N-terminal cytoplasmic
domain, a single transmembrane helix, and a larger
C-terminal extracellular domain containing the active
site. Proteins in this family fulfill a broad range of
physiological roles due to the greater variation in the
S2' subsite allowing substrate specificity. NEP is
expressed in a variety of tissues including kidney and
brain, and is involved in many physiological and
pathological processes, including blood pressure and
inflammatory response. It degrades a wide array of
substrates such as substance P, enkephalins,
cholecystokinin, neurotensin and somatostatin. It is an
important enzyme in the regulation of amyloid-beta
(Abeta) protein that forms amyloid plaques that are
associated with Alzeimers disease (AD). ECE-1 catalyzes
the final rate-limiting step in the biosynthesis of
endothelins via post-translational conversion of the
biologically inactive big endothelins. Like NEP, it also
hydrolyses bradykinin, substance P, neurotensin and
Abeta. Endothelin-1 overproduction has been implicated
in various diseases, including stroke, asthma,
hypertension, and cardiac and renal failure. Kell is a
homolog of NEP and constitutes a major antigen on human
erythrocytes; it preferentially cleaves big endothelin-3
to produce bioactive endothelin-3, but is also known to
cleave substance P and neurokinin A. PHEX forms a
complex interaction with fibroblast growth factor 23
(FGF23) and matrix extracellular phosphoglycoprotein,
causing bone mineralization. A loss-of-function mutation
in PHEX disrupts this interaction leading to
hypophosphatemic rickets; X-linked hypophosphatemic
(XLH) rickets is the most common form of metabolic
rickets. ECEL1 is a brain metalloprotease involved in
the critical role in the nervous regulation of the
respiratory system, while DINE (damage induced neuronal
endopeptidase) is abundantly expressed in the
hypothalamus and its expression responds to nerve injury
as well. Thus, majority of these M13 proteases are prime
therapeutic targets for selective inhibition.
Length = 611
Score = 487 bits (1257), Expect = e-168
Identities = 175/435 (40%), Positives = 250/435 (57%), Gaps = 58/435 (13%)
Query: 41 LRVIHNYALWKLVLATVGSHMIGEFQEKKIEFKRILLGVQSEKARWRDCVEWTNKKMGMA 100
LR + NY +W+L+ + ++ EF++ + + L G + ++ RW+ CV N +G A
Sbjct: 234 LRTLKNYLIWRLLDSLA-PYLSEEFRDANFFYGKTLSGTKEQRPRWKRCVSLVNGLLGEA 292
Query: 101 VGSLFIRDNFNQESKETASEMIKSLREAFNELLDENHWMDNDTRSVAKEKANAMMERIGY 160
+G L++R F E+K E++++L++AF E L+ WMD +T+ A EK +AM +IGY
Sbjct: 293 LGRLYVRKYFPPEAKARVEELVENLKKAFRERLENLDWMDEETKKKALEKLDAMTVKIGY 352
Query: 161 PETLTNPVELTKEYLNATLTEVDRHDNAYWYHKLTLQQLQDLVPQFNWLQYLSSFLTIKI 220
P+ W Y S L I
Sbjct: 353 PD--------------------------------------------KWRDY--SKLDIDY 366
Query: 221 DSNESLLNITKDHFLENIFNLLKFDAYQNLQKLRQPVNKDQWTTDPAIVNAFYNPNKNEI 280
D D + N+ L +F+ +NL KL +PV++ +W P VNA+YNP +NEI
Sbjct: 367 DDL--------DSYFGNVLRLRRFELERNLAKLGKPVDRTEWGMTPQTVNAYYNPTQNEI 418
Query: 281 VLPAGILQPLFYSQSFPKSLNFGGIGVVIGHEITHGFDDKGRQFDKDGNMIEWWNNATIR 340
V PAGILQP F+ P ++N+GGIG VIGHEITHGFDD+GRQFD+DGN+ WW +
Sbjct: 419 VFPAGILQPPFFDPDAPDAVNYGGIGAVIGHEITHGFDDQGRQFDEDGNLRNWWTPEDRK 478
Query: 341 AFRERAQCMIDQYSRYKLDEVDMHINGRMTQGENIADNGGLKQSFRAYRKWVAAYGAEPL 400
AF ER QC++DQYS Y+ +H+NG++T GENIAD GGL+ ++ AY+KW+ GAE L
Sbjct: 479 AFEERTQCLVDQYSNYE-VPPGLHVNGKLTLGENIADLGGLRLAYDAYKKWLKGKGAE-L 536
Query: 401 LPGLNLTHNQLFFLNYAQIWCGQMRPEDALTKVRSANHPPGKFRILGPLSNSRDFSEAYN 460
PG T +QLFFL++AQ+WC + RPE + + H PGKFR+ G LSNS +F+EA+N
Sbjct: 537 PPGDGFTPDQLFFLSFAQVWCSKYRPEALRQLLLTDPHSPGKFRVNGVLSNSPEFAEAFN 596
Query: 461 CPLGTR-MNPVAKCS 474
CP G MNP +C
Sbjct: 597 CPPGDPYMNPEKRCR 611
Score = 51.9 bits (125), Expect = 4e-07
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 146 VAKEKANAMMERIGYPETLTNPVELTKEYLNATLTEVDRHDNAYWYHKLTLQQLQDLVPQ 205
+E A A+ E + + E + +E +R D Y+ +TL +LQ L P
Sbjct: 145 EDEEDAEALAEEV---------LAFETELAKISWSEEERRDPEKTYNPMTLAELQKLAPG 195
Query: 206 FNWLQYLSSFLTIKIDSNESLLNITKDHFLENIFNLLK 243
+W YL + + S + + +T+ +L+ + LL
Sbjct: 196 IDWKAYLE---ALGLPSEDEKVIVTQPDYLKKLNKLLA 230
>gnl|CDD|226118 COG3590, PepO, Predicted metalloendopeptidase [Posttranslational
modification, protein turnover, chaperones].
Length = 654
Score = 268 bits (687), Expect = 8e-83
Identities = 137/422 (32%), Positives = 202/422 (47%), Gaps = 65/422 (15%)
Query: 47 YALWKLVLATVGSHMIGEFQEKKIEF-KRILLGVQSEKARWRDCVEWTNKKMGMAVGSLF 105
+ WKL+ A ++ + ++ +F R L G + RW+ V + G A+G L+
Sbjct: 286 WLRWKLIRAA-APYLTEDLVDEHFDFYGRTLSGQPEARDRWKRAVNLAERLFGEAIGLLY 344
Query: 106 IRDNFNQESKETASEMIKSLREAFNELLDENHWMDNDTRSVAKEKANAMMERIGYPETLT 165
++ F E+K E++ +L +A+ + + WM +TR A EK N +IGYP+
Sbjct: 345 VKRYFPPEAKADMEELVANLIKAYKARISKLDWMTPETREKALEKLNKFTAKIGYPDP-- 402
Query: 166 NPVELTKEYLNATLTEVDRHDNAYWYHKLTLQQLQDLVPQFNWLQYLSSFLTIKIDSNES 225
W Y S L IK DS
Sbjct: 403 ------------------------------------------WRYY--SKLEIKRDS--- 415
Query: 226 LLNITKDHFLENIFNLLKFDAYQNLQKLRQPVNKDQWTTDPAIVNAFYNPNKNEIVLPAG 285
N+ F+ L K+ +PV++D+W P VNA+YNP KNEIV PA
Sbjct: 416 --------LYGNVLRASAFNHAHELSKIGKPVDRDEWEMPPQTVNAYYNPQKNEIVFPAA 467
Query: 286 ILQPLFYSQSFPKSLNFGGIGVVIGHEITHGFDDKGRQFDKDGNMIEWWNNATIRAFRER 345
ILQ F+ + N+GGIG VIGHEI HGFDD+G +FD DGN+ +WW + AF+ER
Sbjct: 468 ILQAPFFDPEADSAANYGGIGAVIGHEIGHGFDDQGAKFDGDGNLNDWWTDEDAAAFKER 527
Query: 346 AQCMIDQYSRYKLDEVDMHINGRMTQGENIADNGGLKQSFRAYRKWVAAYGAEPLLPGLN 405
+ ++ Q+ Y+ E +T GENIAD GGL + AY+ + P++ G
Sbjct: 528 TKKLVAQFDGYE-PEGGKDNGNALTVGENIADLGGLAIALDAYKLSLD---PAPVIDG-- 581
Query: 406 LTHNQLFFLNYAQIWCGQMRPEDALTKVRSANHPPGKFRILGPLSNSRDFSEAYNCPLGT 465
T Q FFLN+AQIW + RPE+ ++ H P +FR+ GP+ N +F EA++ G
Sbjct: 582 FTGLQRFFLNWAQIWRMKARPEEQQMRLSVDPHSPAEFRVNGPVRNMDEFYEAFDVKEGD 641
Query: 466 RM 467
M
Sbjct: 642 AM 643
>gnl|CDD|216499 pfam01431, Peptidase_M13, Peptidase family M13. Mammalian enzymes
are typically type-II membrane anchored enzymes which
are known, or believed to activate or inactivate
oligopeptide (pro)-hormones such as opioid peptides. The
family also contains a bacterial member believed to be
involved with milk protein cleavage.
Length = 206
Score = 220 bits (562), Expect = 1e-69
Identities = 99/209 (47%), Positives = 129/209 (61%), Gaps = 6/209 (2%)
Query: 270 NAFYNPNKNEIVLPAGILQPLFYSQSFPKSLNFGGIGVVIGHEITHGFDDKGRQFDKDGN 329
NA+YNP N + PAGIL P F++ +P ++N+GGIG V+GHEI HGFDD+G QFDKDGN
Sbjct: 1 NAYYNPGFNYLTFPAGILVPPFFNDLYPPAVNYGGIGFVLGHEIMHGFDDQGIQFDKDGN 60
Query: 330 MIEWWNNATIRAFRERAQCMIDQYSRYKL-DEVDMH-INGRMTQGENIADNGGLKQSFRA 387
+ WW + F++ AQC+IDQY Y D V NG T GENIAD GGL+ + +A
Sbjct: 61 LCGWWTDEDEAEFKDAAQCLIDQYDEYGDPDAVKPDCWNGATTFGENIADLGGLRIALKA 120
Query: 388 YRKWVAAYGAEPLLPGL-NLTHNQLFFLNYAQIWCGQMRPEDALTKVRSANHPPGKFRIL 446
Y K E LPGL NLT +QLFF YAQ WC + RP+++LT++ H P + R+
Sbjct: 121 YAK---KSANEQRLPGLENLTPDQLFFETYAQSWCRKSRPKNSLTQLLVDPHSPLELRVN 177
Query: 447 GPLSNSRDFSEAYNCPLGTRMNPVAKCSV 475
G + N F A+NC G RM P +
Sbjct: 178 GAVRNMPAFYSAFNCKPGDRMFPKPEKRC 206
>gnl|CDD|218676 pfam05649, Peptidase_M13_N, Peptidase family M13. M13 peptidases
are well-studied proteases found in a wide range of
organisms including mammals and bacteria. In mammals
they participate in processes such as cardiovascular
development, blood-pressure regulation, nervous control
of respiration, and regulation of the function of
neuropeptides in the central nervous system. In bacteria
they may be used for digestion of milk.
Length = 380
Score = 128 bits (325), Expect = 4e-33
Identities = 44/122 (36%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Query: 41 LRVIHNYALWKLVLATVGSHMIGEFQEKKIEF-KRILLGVQSEKARWRDCVEWTNKKMGM 99
L + NY +WKL+ + ++ EF++ EF + L G + ++ RW+ CV N +G
Sbjct: 260 LETLKNYLIWKLIDSFA-PYLSEEFRDANFEFYGKTLSGTKEQRPRWKRCVSLVNGLLGE 318
Query: 100 AVGSLFIRDNFNQESKETASEMIKSLREAFNELLDENHWMDNDTRSVAKEKANAMMERIG 159
A+G L++ F E+K EM+K++++AF E L+E WM +T+ A EK +AM +IG
Sbjct: 319 ALGRLYVEKYFPPEAKADVEEMVKNIKKAFRERLEELDWMSEETKKKALEKLDAMTVKIG 378
Query: 160 YP 161
YP
Sbjct: 379 YP 380
Score = 51.6 bits (124), Expect = 4e-07
Identities = 20/98 (20%), Positives = 45/98 (45%), Gaps = 12/98 (12%)
Query: 146 VAKEKANAMMERIGYPETLTNPVELTKEYLNATLTEVDRHDNAYWYHKLTLQQLQDLVPQ 205
+ +++A E + V + A+ + + D A Y+ +TL +LQ L P
Sbjct: 171 LDEDEAEKAAEDV---------VAFETKLAKASWSREELRDPAKLYNPMTLAELQALAPG 221
Query: 206 FNWLQYLSSFLTIKIDSNESLLNITKDHFLENIFNLLK 243
+W +YLS+ + + + + +++ +L+ + LL
Sbjct: 222 LDWKRYLSA---LGLPKDPDEVIVSQPDYLKALNKLLA 256
>gnl|CDD|189001 cd09594, GluZincin, Peptidase Gluzincin family (thermolysin-like
proteinases, TLPs) includes peptidases M1, M2, M3, M4,
M13, M32 and M36 (fungalysins). Gluzincin family
(thermolysin-like peptidases or TLPs) includes several
zinc-dependent metallopeptidases such as the M1, M2, M3,
M4, M13, M32, M36 peptidases (MEROPS classification),
and contain HEXXH and EXXXD motifs as part of their
active site. All peptidases in this family bind a single
catalytic zinc ion which is tetrahedrally co-ordinated
by three amino acid ligands and a water molecule that
forms the nucleophile on activation during catalysis. M1
family includes aminopeptidase N (APN) and leukotriene
A4 hydrolase (LTA4H). APN preferentially cleaves
neutral amino acids from the N-terminus of oligopeptides
and is present in a variety of human tissues and cell
types. LTA4H is a bifunctional enzyme, possessing an
aminopeptidase as well as an epoxide hydrolase activity
such that the two activities occupy different, but
overlapping sites. The peptidase M3 or neurolysin-like
family, includes M3, M2 and M32 metallopeptidases. The
M3 peptidases have two subfamilies: M3A, includes thimet
oligopeptidase (TOP; endopeptidase 3.4.24.15),
neurolysin (3.4.24.16), and the mitochondrial
intermediate peptidase; M3B contains oligopeptidase F.
M2 peptidase angiotensin converting enzyme (ACE, EC
3.4.15.1) catalyzes the conversion of decapeptide
angiotensin I to the potent vasopressor octapeptide
angiotensin II. ACE is a key part of the
renin-angiotensin system that regulates blood pressure,
thus ACE inhibitors are important for the treatment of
hypertension. M32 family includes two eukaryotic enzymes
from protozoa Trypanosoma cruzi, a causative agent of
Chagas' disease, and Leishmania major, a parasite that
causes leishmaniasis, making them attractive targets for
drug development. The M4 family includes secreted
protease thermolysin (EC 3.4.24.27), pseudolysin,
aureolysin, neutral protease as well as fungalysin and
bacillolysin (EC 3.4.24.28) that degrade extracellular
proteins and peptides for bacterial nutrition,
especially prior to sporulation. Thermolysin is widely
used as a nonspecific protease to obtain fragments for
peptide sequencing as well as in production of the
artificial sweetener aspartame. M13 family includes
neprilysin (EC 3.4.24.11) and endothelin-converting
enzyme I (ECE-1, EC 3.4.24.71), which fulfill a broad
range of physiological roles due to the greater
variation in the S2' subsite allowing substrate
specificity and are prime therapeutic targets for
selective inhibition. Peptidase M36 (fungamysin) family
includes endopeptidases from pathogenic fungi.
Fungalysin hydrolyzes extracellular matrix proteins such
as elastin and keratin. Aspergillus fumigatus causes the
pulmonary disease aspergillosis by invading the lungs of
immuno-compromised animals and secreting fungalysin that
possibly breaks down proteinaceous structural barriers.
Length = 125
Score = 50.1 bits (120), Expect = 1e-07
Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 9/63 (14%)
Query: 266 PAIVNAFYNPNKNEIVLPAGILQPLFYSQSFPKSLNFGGIGVVIGHEITHGFDDKGRQFD 325
+ NA N IV+ GIL L V+GHE+THG D+ D
Sbjct: 39 GKVNNAMCNGLDARIVMNDGIL---------VAFLLDSDDFGVVGHELTHGVTDQLVGND 89
Query: 326 KDG 328
D
Sbjct: 90 PDL 92
>gnl|CDD|189004 cd09597, M4_neutral_protease, Peptidase M4 family includes
thermolysin, protealysin, aureolysin and neutral
protease. This peptidase M4 family includes several
endopeptidases such as thermolysin (EC 3.4.24.27),
aureolysin (the extracellular metalloproteinase from
Staphylococcus aureus), neutral protease from Bacillus
cereus and protealysin. These enzymes have a two-domain
structure with the active site between the domains. The
N-terminal domain contains the HEXXH zinc-binding motif
while the helical C-terminal domain, which is unique for
the family, carries the third zinc ligand. Most of these
secreted proteases degrade extracellular proteins and
peptides for bacterial nutrition, especially prior to
sporulation. They have N-terminal propeptides that
assist in folding and are removed autocatalytically.
Thermolysin is widely used as a nonspecific protease to
obtain fragments for peptide sequencing. It has also
been used in production of the artificial sweetener
aspartame.
Length = 280
Score = 33.4 bits (77), Expect = 0.19
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 20/94 (21%)
Query: 227 LNITKDHFLENIFNLLKFDAYQNLQKLRQPVNKDQWTTDPAIVNAFYNPNKNEIVLPAGI 286
+T D F +++F D N KL V+ NAF++ + ++V G
Sbjct: 44 AGVTYD-FYKDVFGRNSID--GNGMKLVSRVHYGSN-----YDNAFWDGS--QMVFGDG- 92
Query: 287 LQPLFYSQSFPKSLNFGGIGVVIGHEITHGFDDK 320
+ F SL+ V+ HE+THG +
Sbjct: 93 -DGTTFP--FTVSLD------VVAHELTHGVTEY 117
>gnl|CDD|217252 pfam02852, Pyr_redox_dim, Pyridine nucleotide-disulphide
oxidoreductase, dimerisation domain. This family
includes both class I and class II oxidoreductases and
also NADH oxidases and peroxidases.
Length = 110
Score = 29.5 bits (67), Expect = 1.3
Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Query: 21 YDVIVLSLKTNERAIAKID---FLRVIHNYALWKLVLATVGSHMIGE 64
V K N RA+A + F++++ + ++ +G+H++G
Sbjct: 28 VKVGKFPFKANGRALAYGETKGFVKLVADAETGRI----LGAHIVGP 70
>gnl|CDD|188992 cd02699, M4, Peptidase M4 family includes thermolysin, pseudolysin,
aureolysin, neutral protease and bacillolysin. M4
Peptidase family belong to the Glu-zincins family and
includes numerous zinc-dependent metallopeptidases that
hydrolyze peptide bonds such as thermolysin (EC
3.4.24.27), pseudolysin (the extracellullar elastase of
Pseudomonas aeruginosa), aureolysin (the extracellular
metalloproteinase from Staphylococcus aureus), neutral
protease from Bacillus cereus as well as fungalysin
(from Aspergillus fumigates) and bacillolysin (EC
3.4.24.28). Typically, the M4 peptidases consist of a
presequence (signal sequence), a propeptide sequence and
a peptidase unit. The presequence is cleaved off during
export while the propeptide has inhibitory and chaperone
functions and facilitates folding. The propeptide
remains attached until the peptidase is secreted and can
be safely activated. All peptidases in this family bind
a single catalytic zinc ion which is tetrahedrally
co-ordinated by three amino acid ligands and a water
molecule that forms the nucleophile on activation during
catalysis. These peptidases are secreted eubacterial
endopeptidases from Gram-positive or Gram-negative
sources that degrade extracellular proteins and peptides
for bacterial nutrition. They contain HEXXH and EXXXD
motifs as part of their active site and are selectively
inhibited by Steptomyces metalloproteinase inhibitor
(SMPI) as well as by phosphoramidon from Streptomyces
tanashiensis. A large number of these enzymes are
implicated as key factors in the pathogenesis of various
diseases, including gastritis, peptic ulcer, gastric
carcinoma, cholera and several types of bacterial
infections, and are therefore important drug targets.
Some enzymes of the family can function at extremes of
temperatures, while some function in organic solvents,
thus rendering them novel targets for biotechnological
applications.
Length = 230
Score = 30.4 bits (69), Expect = 1.6
Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 19/94 (20%)
Query: 227 LNITKDHFLENIFNLLKFDAYQNLQKLRQPVNKDQWTTDPAIVNAFYNPNKNEIVLPAGI 286
+T D + ++ D N +L V+ + NAF++ + ++V G
Sbjct: 46 AGVTYDFY-KDYLGRNSID--GNGMRLVSRVHYGEN-----YDNAFWDGS--QMVFGDG- 94
Query: 287 LQPLFYSQSFPKSLNFGGIGVVIGHEITHGFDDK 320
F SL+ V+ HE+THG D
Sbjct: 95 --DGSTFTPFAVSLD------VVAHELTHGVTDS 120
>gnl|CDD|220092 pfam09028, Mac-1, Mac 1. The bacterial protein Mac 1 adopts an
alpha/beta fold, with 14 beta strands and 9 alpha
helices. The N-terminal domain is made up predominantly
of alpha helices, whereas the C-terminal domain consists
predominantly of beta sheets. Mac 1 blocks
polymorphonuclear opsonophagocytosis, inhibits the
production of reactive oxygen species and contains IgG
endopeptidase activity.
Length = 333
Score = 30.4 bits (68), Expect = 1.9
Identities = 32/153 (20%), Positives = 56/153 (36%), Gaps = 29/153 (18%)
Query: 252 KLRQPVNKDQWTTDPAIVNA---FYNPNKNEIVLPAGILQPLFYSQSFPKSLNFGGIGVV 308
K+ + + + + TDP + + FYN K + + G P ++ GGI
Sbjct: 21 KVDRGIETEDYFTDPEVETSETKFYNVTKLDKLWVQGQTPPAYFVI--------GGIVYT 72
Query: 309 IGHEITHGFDDKGRQFD-KD---------GNMIEWW---NNATIRAFRERAQCMIDQYSR 355
+ G+ D +Q + +D NM+ WW N I + + +
Sbjct: 73 APFKAGKGYYDTNKQINGRDISLCWAATASNMLHWWFEQNKDYIEQYLKEKKQKAAIGEW 132
Query: 356 YKLDEVDMHINGRMTQGENIADNGGLKQSFRAY 388
+ + +I G Q DN + FRAY
Sbjct: 133 KRPLDKRDYIRGLQDQ-----DNSNIFNIFRAY 160
>gnl|CDD|182043 PRK09716, PRK09716, hypothetical protein; Provisional.
Length = 395
Score = 30.4 bits (68), Expect = 2.0
Identities = 36/167 (21%), Positives = 72/167 (43%), Gaps = 26/167 (15%)
Query: 116 ETASEMIKSLREAFNELLDENHWMDNDTRSVAKE------KANAMMERIGYPETLTNPVE 169
+ E +K +R A + + D + KE K N + RI PE + E
Sbjct: 243 DITEEQLKIMRFAIIKSIPRATLTDKLENELTKEIYKSSSKINNCLNRIKLPEMIDFSSE 302
Query: 170 LTKEYLNATLTEVDR-HDNAYWYHKLTLQQLQDLVPQFNWLQYLSSFLTIKIDSNESLLN 228
+Y++ + + + +NAY ++PQ N+ + L I+ S+E LL+
Sbjct: 303 KIHDYIDIIIEDYENIKENAYL-----------VIPQINY----TMDLNIEDSSSEELLS 347
Query: 229 ---ITKD-HFLENIFNLLKFDAYQNLQKLRQPVNKDQWTTDPAIVNA 271
+ KD + +N F + +++ Y+ Q ++ +T + ++NA
Sbjct: 348 DNTLEKDENSPDNGFEVGEYNTYEAYNSENQYFTREDYTYNYDLLNA 394
>gnl|CDD|206370 pfam14202, TnpW, Transposon-encoded protein TnpW. This family of
proteins is found in bacteria. Proteins in this family
are typically between 54 and 75 amino acids in length.
There is a single completely conserved residue G that
may be functionally important.
Length = 37
Score = 26.7 bits (60), Expect = 2.6
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 93 TNKKMGMAVGSLFI-RDNFNQESKETASEMIKSL 125
T KK+G + ++ +F++ S ET + IK L
Sbjct: 3 TEKKIG---KTTYVVEVHFSESSTETMEDKIKRL 33
>gnl|CDD|184293 PRK13742, PRK13742, replication protein; Provisional.
Length = 245
Score = 29.9 bits (67), Expect = 2.6
Identities = 14/84 (16%), Positives = 34/84 (40%), Gaps = 10/84 (11%)
Query: 106 IRDNFNQ----ESKETASEMIKSLREAFNELLDENHWMDNDTRSVAKEKANAMMERIGYP 161
+++ F Q E+KE + L E+ + + D + K + ++ER P
Sbjct: 142 LQNRFTQFRLSETKEITNPYAMRLYESLCQ------YRKPDGSGIVSLKIDWIIERYQLP 195
Query: 162 ETLTNPVELTKEYLNATLTEVDRH 185
++ + + +L + E++
Sbjct: 196 QSYQRMPDFRRRFLQPCVNEINSR 219
>gnl|CDD|216508 pfam01447, Peptidase_M4, Thermolysin metallopeptidase, catalytic
domain.
Length = 150
Score = 28.9 bits (65), Expect = 3.7
Identities = 9/15 (60%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
Query: 303 GGIGVVIGHEITHGF 317
G + VV GHE+THG
Sbjct: 134 GSLDVV-GHELTHGV 147
>gnl|CDD|237402 PRK13504, PRK13504, sulfite reductase subunit beta; Provisional.
Length = 569
Score = 29.4 bits (67), Expect = 4.5
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 7/40 (17%)
Query: 212 LSSFLTIKIDSN-------ESLLNITKDHFLENIFNLLKF 244
LS IK++SN E L + F E+ F LLKF
Sbjct: 11 LSDVERIKLESNYLRGTIAEELNDGLTGGFSEDDFQLLKF 50
>gnl|CDD|223768 COG0696, GpmI, Phosphoglyceromutase [Carbohydrate transport and
metabolism].
Length = 509
Score = 28.8 bits (65), Expect = 7.9
Identities = 11/52 (21%), Positives = 15/52 (28%), Gaps = 2/52 (3%)
Query: 131 ELLDENHWMDNDTRSVAKEKANAMMERIGYPETLTNPVELTKEYLNATLTEV 182
L + + + M Y + PV E L TL EV
Sbjct: 268 RALTNDDFDGFSRDKKVPKNDFVTMTE--YDGSDPLPVAFPPENLKNTLGEV 317
>gnl|CDD|200969 pfam00064, Neur, Neuraminidase. Neuraminidases cleave sialic acid
residues from glycoproteins. Belong to the sialidase
family - but this alignment does not generalise to the
other sialidases. Structure is a 6-sheet beta propeller.
Length = 468
Score = 28.6 bits (64), Expect = 9.0
Identities = 14/57 (24%), Positives = 22/57 (38%)
Query: 121 MIKSLREAFNELLDENHWMDNDTRSVAKEKANAMMERIGYPETLTNPVELTKEYLNA 177
+ K+ R F L N W D D++ + K+ GY + T P E +
Sbjct: 366 ISKTSRSGFEMLKVPNGWTDTDSKQIHKQVIVDNKNWSGYSGSFTIPWAEGGECIVP 422
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.413
Gapped
Lambda K H
0.267 0.0852 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,361,288
Number of extensions: 2377543
Number of successful extensions: 2364
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2355
Number of HSP's successfully gapped: 36
Length of query: 476
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 375
Effective length of database: 6,457,848
Effective search space: 2421693000
Effective search space used: 2421693000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.0 bits)