RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5137
(476 letters)
>1r1h_A Neprilysin; enkephalinase, glycoprotein, metalloprotease,
hydrolase; HET: NAG BIR; 1.95A {Homo sapiens} SCOP:
d.92.1.4 PDB: 1dmt_A* 1r1i_A* 1r1j_A* 1y8j_A* 2qpj_A*
2yb9_A*
Length = 696
Score = 564 bits (1455), Expect = 0.0
Identities = 184/438 (42%), Positives = 254/438 (57%), Gaps = 53/438 (12%)
Query: 41 LRVIHNYALWKLVLATVGSHMIGEFQEKKIEFKRILLGVQSEKARWRDCVEWTNKKMGMA 100
R + N W+ ++ V S + ++E + F++ L G SE A WR C + N M A
Sbjct: 310 ARDLQNLMSWRFIMDLV-SSLSRTYKESRNAFRKALYGTTSETATWRRCANYVNGNMENA 368
Query: 101 VGSLFIRDNFNQESKETASEMIKSLREAFNELLDENHWMDNDTRSVAKEKANAMMERIGY 160
VG L++ F ESK ++I +RE F + LD+ WMD +T+ A+EKA A+ ERIGY
Sbjct: 369 VGRLYVEAAFAGESKHVVEDLIAQIREVFIQTLDDLTWMDAETKKRAEEKALAIKERIGY 428
Query: 161 PET-LTNPVELTKEYLNATLTEVDRHDNAYWYHKLTLQQLQDLVPQFNWLQYLSSFLTIK 219
P+ ++N +L EY
Sbjct: 429 PDDIVSNDNKLNNEY--------------------------------------------- 443
Query: 220 IDSNESLLNITKDHFLENIFNLLKFDAYQNLQKLRQPVNKDQWTTDPAIVNAFYNPNKNE 279
LN +D + ENI LKF + L+KLR+ V+KD+W + A+VNAFY+ +N+
Sbjct: 444 -----LELNYKEDEYFENIIQNLKFSQSKQLKKLREKVDKDEWISGAAVVNAFYSSGRNQ 498
Query: 280 IVLPAGILQPLFYSQSFPKSLNFGGIGVVIGHEITHGFDDKGRQFDKDGNMIEWWNNATI 339
IV PAGILQP F+S SLN+GGIG+VIGHEITHGFDD GR F+KDG++++WW +
Sbjct: 499 IVFPAGILQPPFFSAQQSNSLNYGGIGMVIGHEITHGFDDNGRNFNKDGDLVDWWTQQSA 558
Query: 340 RAFRERAQCMIDQYSRYKLDEVD-MHINGRMTQGENIADNGGLKQSFRAYRKWVAAYGAE 398
F+E++QCM+ QY + D H+NG T GENIADNGGL Q++RAY+ ++ G E
Sbjct: 559 SNFKEQSQCMVYQYGNFSWDLAGGQHLNGINTLGENIADNGGLGQAYRAYQNYIKKNGEE 618
Query: 399 PLLPGLNLTHNQLFFLNYAQIWCGQMRPEDALTKVRSANHPPGKFRILGPLSNSRDFSEA 458
LLPGL+L H QLFFLN+AQ+WCG RPE A+ +++ H PG FRI+G L NS +FSEA
Sbjct: 619 KLLPGLDLNHKQLFFLNFAQVWCGTYRPEYAVNSIKTDVHSPGNFRIIGTLQNSAEFSEA 678
Query: 459 YNCPLGTRMNPVAKCSVW 476
++C + MNP KC VW
Sbjct: 679 FHCRKNSYMNPEKKCRVW 696
Score = 47.0 bits (112), Expect = 1e-05
Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 19/113 (16%)
Query: 140 DNDTRSVAKEKANAMMERIGYPETLTNPVELTKEYLNATLTEVDRHDNAYWYHKLTLQQL 199
+ + + + M ++ +EL KE NAT DR+D Y+K+TL Q+
Sbjct: 204 QEERLPIDENQLALEMNKV---------MELEKEIANATAKPEDRNDPMLLYNKMTLAQI 254
Query: 200 QDLV------PQFNWLQYLSSFLT---IKIDSNESLLNITKDHFLENIFNLLK 243
Q+ F+WL + + ++ I I + E + + +L + +L
Sbjct: 255 QNNFSLEINGKPFSWLNFTNEIMSTVNISITNEED-VVVYAPEYLTKLKPILT 306
>3dwb_A ECE-1, endothelin-converting enzyme 1; protein, disease mutation,
glycoprotein, hirschsprung diseas hydrolase, membrane,
metal-binding; HET: 5HD RDF; 2.38A {Homo sapiens}
Length = 670
Score = 552 bits (1423), Expect = 0.0
Identities = 185/473 (39%), Positives = 263/473 (55%), Gaps = 59/473 (12%)
Query: 9 LTALVSPASELCYDVIVLS----LKTNERAIAKIDFLRVIHNYALWKLVLATVGSHMIGE 64
L + P + IV+ L+ I D +++NY +W LV T S +
Sbjct: 252 LNTIFYPVEINESEPIVVYDKEYLEQISTLINTTD-RCLLNNYMIWNLVRKTS-SFLDQR 309
Query: 65 FQEKKIEFKRILLGVQSE-KARWRDCVEWTNKKMGMAVGSLFIRDNFNQESKETASEMIK 123
FQ+ +F ++ G + RW+ CV T +G A+G +F++ F ++SK A+E+I
Sbjct: 310 FQDADEKFMEVMYGTKKTSLPRWKFCVSDTENNLGFALGPMFVKATFAEDSKSIATEIIL 369
Query: 124 SLREAFNELLDENHWMDNDTRSVAKEKANAMMERIGYPETLTNPVELTKEYLNATLTEVD 183
+++AF E L WMD +TR AKEKA+A+ IGYP + +P EL K +
Sbjct: 370 EIKKAFEESLSTLKWMDEETRKSAKEKADAIYNMIGYPNFIMDPKELDKVF--------- 420
Query: 184 RHDNAYWYHKLTLQQLQDLVPQFNWLQYLSSFLTIKIDSNESLLNITKDHFLENIFNLLK 243
+ D + EN
Sbjct: 421 -----------------------------------------NDYTAVPDLYFENAMRFFN 439
Query: 244 FDAYQNLQKLRQPVNKDQWTTDPAIVNAFYNPNKNEIVLPAGILQPLFYSQSFPKSLNFG 303
F +LR+ N+DQW+ P +VNA+Y+P KNEIV PAGILQ FY++S PK+LNFG
Sbjct: 440 FSWRVTADQLRKAPNRDQWSMTPPMVNAYYSPTKNEIVFPAGILQAPFYTRSSPKALNFG 499
Query: 304 GIGVVIGHEITHGFDDKGRQFDKDGNMIEWWNNATIRAFRERAQCMIDQYSRYKLDEVDM 363
GIGVV+GHE+TH FDD+GR++DKDGN+ WW N+++ AF+ + +CM++QYS Y ++
Sbjct: 500 GIGVVVGHELTHAFDDQGREYDKDGNLRPWWKNSSVEAFKRQTECMVEQYSNYSVN--GE 557
Query: 364 HINGRMTQGENIADNGGLKQSFRAYRKWVAAYGAEPLLPGLNLTHNQLFFLNYAQIWCGQ 423
+NGR T GENIADNGGLK ++RAY+ WV GAE LP L LT+NQLFFL +AQ+WC
Sbjct: 558 PVNGRHTLGENIADNGGLKAAYRAYQNWVKKNGAEHSLPTLGLTNNQLFFLGFAQVWCSV 617
Query: 424 MRPEDALTKVRSANHPPGKFRILGPLSNSRDFSEAYNCPLGTRMNPVAKCSVW 476
PE + + + H P +FR++G LSNS++FSE + CP G+ MNP KC VW
Sbjct: 618 RTPESSHEGLITDPHSPSRFRVIGSLSNSKEFSEHFRCPPGSPMNPPHKCEVW 670
Score = 56.6 bits (137), Expect = 9e-09
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 148 KEKANAMMERIGYPETLTNPVELTKEYLNATLTEVDRHDNAYWYHKLTLQQLQDLVPQFN 207
+E M++I ++ N T+ + R D YHK+T +LQ L P N
Sbjct: 197 EEAIRPQMQQI---------LDFETALANITIPQEKRRDEELIYHKVTAAELQTLAPAIN 247
Query: 208 WLQYLSS-FLTIKIDSNESLLNITKDHFLENIFNLLK 243
WL +L++ F ++I+ +E ++ K+ +LE I L+
Sbjct: 248 WLPFLNTIFYPVEINESEPIVVYDKE-YLEQISTLIN 283
>3zuk_A Endopeptidase, peptidase family M13; hydrolase-inhibitor complex,
pathogenicity, phagosome matura; HET: RDF 211 PGE PG4;
2.60A {Mycobacterium tuberculosis}
Length = 699
Score = 505 bits (1301), Expect = e-174
Identities = 131/444 (29%), Positives = 198/444 (44%), Gaps = 69/444 (15%)
Query: 41 LRVIHNYALWKLVLATVGSHMIGEFQEKKIEF-KRILLGVQSEKARWRDCVEWTNKKMGM 99
+ +A W+L+ A + + EF R L G Q + RW+ V MG
Sbjct: 316 VEDWKCWARWRLIRARA-PWLTRALVAEDFEFYGRTLTGAQQLRDRWKRGVSLVENLMGD 374
Query: 100 AVGSLFIRDNFNQESKETASEMIKSLREAFNELLDENHWMDNDTRSVAKEKANAMMERIG 159
AVG L+++ +F ++K ++ +L+EA+ + E WM TR A K N ++G
Sbjct: 375 AVGKLYVQRHFPPDAKSRIDTLVDNLQEAYRISISELDWMTPQTRQRALAKLNKFTAKVG 434
Query: 160 YPETLTNPVELTKEYLNATLTEVDRHDNAYWYHKLTLQQLQDLVPQFNWLQYLSSFLTIK 219
YP W Y
Sbjct: 435 YPIK--------------------------------------------WRDY-------- 442
Query: 220 IDSNESLLNITKDHFLENIFNLLKFDAYQNLQKLRQPVNKDQWTTDPAIVNAFYNPNKNE 279
S L I +D N+ + + L KL PV++D+W P VNA+YNP NE
Sbjct: 443 -----SKLAIDRDDLYGNVQRGYAVNHDRELAKLFGPVDRDEWFMTPQTVNAYYNPGMNE 497
Query: 280 IVLPAGILQPLFYSQSFPKSLNFGGIGVVIGHEITHGFDDKGRQFDKDGNMIEWWNNATI 339
IV PA ILQP F+ ++ N+GGIG VIGHEI HGFDD+G ++D DGN+++WW +
Sbjct: 498 IVFPAAILQPPFFDPQADEAANYGGIGAVIGHEIGHGFDDQGAKYDGDGNLVDWWTDDDR 557
Query: 340 RAFRERAQCMIDQYSRYKLDEV-----DMHINGRMTQGENIADNGGLKQSFRAYRKWVAA 394
F R + +I+QY Y ++ H+ G T GENI D GGL + AY+ +
Sbjct: 558 TEFAARTKALIEQYHAYTPRDLVDHPGPPHVQGAFTIGENIGDLGGLSIALLAYQLSLNG 617
Query: 395 YGAEPLLPGLNLTHNQLFFLNYAQIWCGQMRPEDALTKVRSANHPPGKFRILGPLSNSRD 454
P++ G LT Q F +AQIW + R +A+ ++ H P +FR G + N
Sbjct: 618 -NPAPVIDG--LTGMQRVFFGWAQIWRTKSRAAEAIRRLAVDPHSPPEFRCNGVVRNVDA 674
Query: 455 FSEAYNCPLGTRM--NPVAKCSVW 476
F +A++ + +P + +W
Sbjct: 675 FYQAFDVTEDDALFLDPQRRVRIW 698
Score = 52.4 bits (126), Expect = 2e-07
Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 11/96 (11%)
Query: 148 KEKANAMMERIGYPETLTNPVELTKEYLNATLTEVDRHDNAYWYHKLTLQQLQDLVPQFN 207
+RI V L + +A V R D Y+ T QLQ F+
Sbjct: 228 SRDHAKTADRI---------VALETKLADAHWDVVKRRDADLGYNLRTFAQLQTEGAGFD 278
Query: 208 WLQYLSSFLTIKIDSNESLLNITKDHFLENIFNLLK 243
W+ ++++ L D+ L + + +L +L
Sbjct: 279 WVSWVTA-LGSAPDAMTE-LVVRQPDYLVTFASLWA 312
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.2 bits (135), Expect = 2e-08
Identities = 52/341 (15%), Positives = 98/341 (28%), Gaps = 132/341 (38%)
Query: 125 LREAFNELL---DENHWMDNDTRSVAKEKANAMMERIGYPETLTNPVELTKEYLNATLTE 181
L+E FN++L E D++ + P EL ++L +
Sbjct: 33 LQEQFNKILPEPTEGFAADDEPTT---------------------PAELVGKFLGYVSSL 71
Query: 182 VDRHDNAYWYHKLTLQQLQDLVPQFNWLQYLSSFLTIKIDSNE--SL---LNITKDHFLE 236
V+ Q L + +F + +L N+ +L L D L
Sbjct: 72 VEPSKVG-----QFDQVLNLCLTEFE-----NCYLE----GNDIHALAAKLLQENDTTLV 117
Query: 237 NIFNLLKFDAYQNLQKLRQPVNKDQWTTDPAIVNAFYNPNKNEIVLPAGILQPLFYSQSF 296
L+K + ++P +K ++ A+ A + G Q +
Sbjct: 118 KTKELIK-NYITARIMAKRPFDK---KSNSALFRA----------VGEGNAQ--LVAI-- 159
Query: 297 PKSLNFGGIGVVIGHEITHGFDDKGRQFDKDGNMIEWWN---------NATIRAFRERAQ 347
FGG Q GN +++ + + + +
Sbjct: 160 -----FGG------------------Q----GNTDDYFEELRDLYQTYHVLVGDLIKFSA 192
Query: 348 CMIDQYSRYKLDEVDMHINGRMTQGENIADNGGLKQSFRAYRKWVAAYGAEP----L--- 400
+ + R LD + TQG NI +W+ P L
Sbjct: 193 ETLSELIRTTLDAEKVF-----TQGLNI-------------LEWLENPSNTPDKDYLLSI 234
Query: 401 ---LPGLNLTHNQLFFLNYAQIWC--GQMRPEDALTKVRSA 436
P + + QL +Y + P + + ++ A
Sbjct: 235 PISCPLIGVI--QL--AHYV-VTAKLLGFTPGELRSYLKGA 270
Score = 45.8 bits (108), Expect = 3e-05
Identities = 27/114 (23%), Positives = 40/114 (35%), Gaps = 40/114 (35%)
Query: 194 LTLQQLQDLVPQFNWLQYLSSFLTIKIDSNESLLNITKDHF--------LENIFNLLKFD 245
LT +Q+QD V + N +L + ++I SL+N + L NL
Sbjct: 344 LTQEQVQDYVNKTN--SHLPAGKQVEI----SLVN-GAKNLVVSGPPQSLYG-LNL---- 391
Query: 246 AYQNLQKLRQPVNKDQWTT-----DPAIVNAFYNPNKNEIVLPAGILQPLFYSQ 294
L+K + P DQ N F LP + P F+S
Sbjct: 392 ---TLRKAKAPSGLDQSRIPFSERKLKFSNRF---------LP--VASP-FHSH 430
Score = 38.5 bits (89), Expect = 0.005
Identities = 57/372 (15%), Positives = 113/372 (30%), Gaps = 125/372 (33%)
Query: 9 LTALVS-PASEL----CYDVIVLSLKTNERAIAKIDFLR--VIHNYALWKLVLATV--GS 59
L+ +S P + Y V L + +L+ H+ L V A +
Sbjct: 232 LSIPISCPLIGVIQLAHYVVTAKLLGFTPGELR--SYLKGATGHSQGL---VTAVAIAET 286
Query: 60 HMIGEFQEKKIEFKRIL--LGVQSEKAR---------WRDCVEWTNKKMG-MAVGSLFIR 107
F + +L +GV+ +A D +E M L I
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM----LSIS 342
Query: 108 DNFNQESKETASEMIKSLREAFNELLDENHWMD----NDTRS--VAKEKANAMMERIGYP 161
+ ++E + + N L ++ N ++ V+ G P
Sbjct: 343 N----LTQEQVQDYV----NKTNSHLPAGKQVEISLVNGAKNLVVS-----------GPP 383
Query: 162 ETLTNPVELTKEYLNATL------TEVDRHDNAYWYHKLTLQQLQDLVPQFNWLQYLSSF 215
++L LN TL + +D+ ++ + + +F+ F
Sbjct: 384 QSLYG--------LNLTLRKAKAPSGLDQS-------RIPFSERK---LKFSN-----RF 420
Query: 216 LTIKIDSNESLLNITKDHFLENIFNL-LKFDAYQNLQKLRQPV-----NKDQWTTDPAIV 269
L + + LL D +++ + F+A ++ PV D +I
Sbjct: 421 LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD----IQIPVYDTFDGSDLRVLSGSIS 476
Query: 270 NAFYNPNKNEIVLPAGILQPLFY--SQSFPKS--LNFG------------------GIGV 307
E ++ I P+ + + F + L+FG G+ V
Sbjct: 477 ---------ERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRV 527
Query: 308 VIGHEITHGFDD 319
++ + DD
Sbjct: 528 IVAGTLDINPDD 539
Score = 37.7 bits (87), Expect = 0.010
Identities = 76/448 (16%), Positives = 130/448 (29%), Gaps = 157/448 (35%)
Query: 105 FIRDNFNQESKETASEMIKSLREAFNELLDENHWM-DNDTRSVAKEKANAMMERIGYPET 163
++ +++ F EN ++ ND ++A A + E T
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEF-----ENCYLEGNDIHALA---AKLLQEN---DTT 115
Query: 164 LTNPVELTKEYLNATLTEVDRHDNAYWYHKLTLQQLQD----LVPQF----NWLQYLSSF 215
L EL K Y+ A + R + L + + + LV F N Y
Sbjct: 116 LVKTKELIKNYITARIM-AKRPFDKKSNSAL-FRAVGEGNAQLVAIFGGQGNTDDYFE-- 171
Query: 216 LTIKIDSNESLLNI--TKDHFLENIFNLLKFDAYQNLQKL-RQPVNKD----------QW 262
E L ++ T + ++ + + L +L R ++ + +W
Sbjct: 172 --------E-LRDLYQTYHVLVGDLIKF----SAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 263 TTDPAIVNAFYNPNKN-----EIVLPA-GILQPLFYSQSF------PKSL--NFGGI--- 305
+P+ P+K+ I P G++Q Y + P L G
Sbjct: 219 LENPSNT-----PDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH 273
Query: 306 --GVVIGHEITHGFDDKGRQFDKDG-NMIEW--WNNATIRAFRERAQCMIDQYSRYKL-- 358
G+V I D F I + I R + Y L
Sbjct: 274 SQGLVTAVAIAET--DSWESFFVSVRKAITVLFF----IGV---RCY---EAYPNTSLPP 321
Query: 359 ----DEVD--------M-HING-RMTQGENIAD--NGGLKQSFRAY-------RKWVAAY 395
D ++ M I+ Q ++ + N L + + V +
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS- 380
Query: 396 GAEPL-LPGLNLTHNQLFFLNYAQIWCGQMRPEDALTKVRSANHPPGK--FRILGPLSN- 451
G P L GLNL L K ++ P G RI P S
Sbjct: 381 GP-PQSLYGLNL----------------------TLRKAKA---PSGLDQSRI--PFSER 412
Query: 452 ----SRDF---SEAYNCPLGTRMNPVAK 472
S F + ++ L + P +
Sbjct: 413 KLKFSNRFLPVASPFHSHL---LVPASD 437
Score = 35.8 bits (82), Expect = 0.040
Identities = 31/190 (16%), Positives = 64/190 (33%), Gaps = 81/190 (42%)
Query: 6 YKALTALVSPASELCYDVIVLSLKTNERAIAKIDFLRVIHNYALWKLVLATVGSHMIGEF 65
Y AL S A V+S+ E + ++V
Sbjct: 1767 Y---AALASLAD-------VMSI---ESLV---------------EVV------------ 1786
Query: 66 QEKKIEFKRILLGVQSEKARWRDCVEWTNKKMGMAVGSLFIRDNFNQESKETASEMIKSL 125
F R G+ + A RD + +N M +A+ + +F+QE+ + +++ +
Sbjct: 1787 ------FYR---GMTMQVAVPRDELGRSNYGM-IAINPGRVAASFSQEALQ---YVVERV 1833
Query: 126 REAFNELLDE--NHWMDN----------DTRSVAKEKANAMMERIGY--------PETLT 165
+ L+ E N N D R++ + ++ I ++L+
Sbjct: 1834 GKRTGWLV-EIVN---YNVENQQYVAAGDLRAL--DTVTNVLNFIKLQKIDIIELQKSLS 1887
Query: 166 NPVELTKEYL 175
+E + +L
Sbjct: 1888 --LEEVEGHL 1895
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.6 bits (133), Expect = 2e-08
Identities = 60/430 (13%), Positives = 127/430 (29%), Gaps = 108/430 (25%)
Query: 60 HMIGEFQEKKIEFKRILLGVQSEKARWRDCVEWTNKKMGMAVGSLFIRDNFNQESKETAS 119
HM E E + ++K IL + DC + + I + + +
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKD-VQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 120 EMI--------KSLREAF-NELLDENH-WMDNDTRSVAKEKANAMMERIGYPETLTNPVE 169
+ + + + F E+L N+ ++ + ++ ++ + I + L N +
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 170 LTKEYLNATLTEVDRHDNAYWYHKLTLQQLQDLVPQFNWLQYLS---------SFLTIKI 220
+ +Y V R Y KL Q L +L P + + +++ + +
Sbjct: 125 VFAKY------NVSRLQP---YLKLR-QALLELRPA----KNVLIDGVLGSGKTWVALDV 170
Query: 221 DSNESLLNITKDHFLENIFNLLKF-------DAYQNLQKLRQPVNKDQWTTDPAIVNAFY 273
+ + + IF L + LQKL ++ + + N
Sbjct: 171 CLSYKV----QCKMDFKIF-WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 274 NPN--KNEIVLPAGILQPLFYSQSFPKSLNFGGIGVVIGHEITHGFDDKGRQFDKDGNMI 331
+ + E L+ L S+ + L +V+ +
Sbjct: 226 RIHSIQAE-------LRRLLKSKPYENCL------LVL--------LNV----------- 253
Query: 332 EWWNNATIRAFRERAQCMIDQYSRYKLDEVDMHINGRMTQGENIADNGGL--KQSFRAYR 389
N AF C I +R+K D T + L +
Sbjct: 254 --QNAKAWNAF--NLSCKILLTTRFK-QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 390 KWV---------AAYGAEPLLPGL---NLTHNQLFFLNYAQIWCGQMRPEDALTKVRSA- 436
K++ P + ++ + N+ + C D LT + +
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC------DKLTTIIESS 362
Query: 437 --NHPPGKFR 444
P ++R
Sbjct: 363 LNVLEPAEYR 372
Score = 55.2 bits (132), Expect = 4e-08
Identities = 60/393 (15%), Positives = 127/393 (32%), Gaps = 139/393 (35%)
Query: 1 MVTSRYKALTALVSPA--SELCYDVIVLSLKTNERAIAKIDFLRVIHNYALWKLVLATVG 58
++T+R+K +T +S A + + D ++L +E K L+ + + L +
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE---VKSLLLKYL-DCRPQDLPREVLT 324
Query: 59 SH-----MIGEFQEKKIEFKRILLGVQSEKARWRDCVEWTNKKMGMAVGSLFIRDNFNQE 113
++ +I E ++ A W DN+
Sbjct: 325 TNPRRLSIIAES-------------IRDGLATW---------------------DNWKHV 350
Query: 114 SKETASEMIKS---------LREAFNEL--LDEN----------HWMD---NDTRSVAKE 149
+ + + +I+S R+ F+ L + W D +D V +
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 150 KAN-AMMERIGYPETLTNP---VELTKE-----YLNATLTE--------------VDRHD 186
+++E+ T++ P +EL + L+ ++ + D
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 187 NAYWY----HKLTLQQLQDLVPQFNWLQYLS-SFLTIKIDSNESLLNITKDHFLENIFNL 241
Y+Y H L + + + F + +L FL KI + + N + I N
Sbjct: 471 Q-YFYSHIGHHLKNIEHPERMTLFRMV-FLDFRFLEQKIRHDSTAWNASGS-----ILNT 523
Query: 242 LKFDAYQNLQKLRQPVNKDQWTTDP-------AIVNAFYNPNKNEIVLP-AGILQPLFYS 293
L Q L+ + + + DP AI++ +N I +L+
Sbjct: 524 L-----QQLKFYKPYICDN----DPKYERLVNAILDFLPKIEENLICSKYTDLLR----- 569
Query: 294 QSFPKSLNFGGIGVVIGHEITHGFDDKGRQFDK 326
+L + F++ +Q +
Sbjct: 570 ----IALMAEDEAI---------FEEAHKQVQR 589
>1bqb_A Protein (aureolysin); hydrolase, metalloproteinase; 1.72A
{Staphylococcus aureus} SCOP: d.92.1.2
Length = 301
Score = 32.3 bits (73), Expect = 0.28
Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 13/87 (14%)
Query: 234 FLENIFNLLKFDAYQNLQKLRQPVNKDQWTTDPAIVNAFYNPNKNEIVLPAGILQPLFYS 293
+ +N F +D + + + + + NA + +K G
Sbjct: 80 YYKNTFGRESYD--NHGSPIVSLTHVNHYGGQDNRNNAAWIGDKMIYGDGDGRTFTNLSG 137
Query: 294 QSFPKSLNFGGIGVVIGHEITHGFDDK 320
+ V+ HEITHG +
Sbjct: 138 AND-----------VVAHEITHGVTQQ 153
>3ozo_A N-acetylglucosaminidase; beta-N-acetyl-D-hexosaminidase,
hydrolase-hydrolase inhibito; HET: NGT; 2.00A {Ostrinia
furnacalis} PDB: 3nsn_A* 3nsm_A* 3ozp_A* 3s6t_A*
Length = 572
Score = 32.1 bits (73), Expect = 0.49
Identities = 21/127 (16%), Positives = 41/127 (32%), Gaps = 23/127 (18%)
Query: 227 LNITKDH---FLENIFNLLKFDAYQNLQKLRQP----------VNKDQWTTDPAIVNAFY 273
LN TKD +LE+I+ ++ ++ V++ W + +I N
Sbjct: 312 LNPTKDELYQYLEDIY--------SDMAEVFDTTDIFHMGGDEVSEACWNSSDSIQNFMM 363
Query: 274 NPNKNEIVLPAGILQPLFYSQSFPKSLNFGGIG-VVIG-HEITHGFDDKGRQFDKDGNMI 331
+ L F ++ K+ G +I + +KD +I
Sbjct: 364 QNRWDLDKESFLKLWNYFQQKAQDKAYKAFGKKLPLILWTSTLTNYKHIDDYLNKDDYII 423
Query: 332 EWWNNAT 338
+ W
Sbjct: 424 QVWTTGV 430
>2vqx_A Metalloproteinase; thermolysin-like structure, zinc, protease,
hydrolase, metalloprotease; 1.82A {Serratia
proteamaculans}
Length = 341
Score = 31.3 bits (70), Expect = 0.63
Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 19/101 (18%)
Query: 220 IDSNESLLNITKDHFLENIFNLLKFDAYQNLQKLRQPVNKDQWTTDPAIVNAFYNPNKNE 279
+D L +T D F F D L V+ + NAF+N +
Sbjct: 90 VDEAYDYLGVTYD-FFWQAFKRNSLD--NQGLPLTGSVHYGKEY-----QNAFWNGQQMV 141
Query: 280 IVLPAGILQPLFYSQSFPKSLNFGGIGVVIGHEITHGFDDK 320
G F +++ V+GH + HG +
Sbjct: 142 FGDGDGE-----IFNRFTIAID------VVGHALAHGVTES 171
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 30.8 bits (69), Expect = 1.2
Identities = 23/136 (16%), Positives = 48/136 (35%), Gaps = 14/136 (10%)
Query: 119 SEMIKSLREAFNELLDENHWMDNDTRSVAKEKANAMMERIG-----------YPETLTNP 167
++ +SL A EL ++ W R E + ++G L +
Sbjct: 397 RQLSQSLLPAIVELAEDAKW---RVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDH 453
Query: 168 VELTKEYLNATLTEVDRHDNAYWYHKLTLQQLQDLVPQFNWLQYLSSFLTIKIDSNESLL 227
V +E + L ++ W H + ++ + N+L +++ I + S
Sbjct: 454 VYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ 513
Query: 228 NITKDHFLENIFNLLK 243
+IT H L + +
Sbjct: 514 DITTKHMLPTVLRMAG 529
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative,
PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 29.5 bits (67), Expect = 2.4
Identities = 19/92 (20%), Positives = 27/92 (29%), Gaps = 28/92 (30%)
Query: 95 KKMGMAVGSLFIRDNFNQESKETASEMIKS----------LREAFNELLDENHWMDNDTR 144
K GM +L I N K A +IK L F L+ +N + +
Sbjct: 216 KAGGMFGEALII---LNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAH 272
Query: 145 SVAKEKANAMMERI-------GYPETLTNPVE 169
+N M + G L P
Sbjct: 273 ------SNKMAAILKAGLEACGIR--LAWPSA 296
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 2.4
Identities = 16/78 (20%), Positives = 23/78 (29%), Gaps = 7/78 (8%)
Query: 108 DNFNQESKETASEMIKSLREAFNELLDENHWMDNDTRSVAKEKANAMMER--IGYPETLT 165
D QE E I+ RE + L E +EKA +E E +
Sbjct: 78 DRLTQEP-----ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE 132
Query: 166 NPVELTKEYLNATLTEVD 183
+ A + D
Sbjct: 133 KNKINNRIADKAFYQQPD 150
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene
cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4
PDB: 1hm7_A 1hm4_A
Length = 337
Score = 29.3 bits (65), Expect = 2.6
Identities = 13/88 (14%), Positives = 21/88 (23%), Gaps = 1/88 (1%)
Query: 104 LFIRDNFNQESKETASEMIKSLREAFNELLDENHWMDNDTRSVAKEKANAMMERIGYPET 163
F+ D+ + E K L + LD + P
Sbjct: 76 FFLFDDLFDGPRGENPEDTKQLTDQVAAALDGPLPDTAPPIAHGFADIWRRTCEGMTPAW 135
Query: 164 LTNPVELTKEYLNATLTEV-DRHDNAYW 190
+ Y + + E R NA
Sbjct: 136 CARSARHWRNYFDGYVDEAESRFWNAPC 163
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain,
PSI-2, protein structure INI structural genomics; HET:
MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Length = 107
Score = 27.2 bits (61), Expect = 4.3
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 13/49 (26%)
Query: 270 NAF---YNPNKNEIVLPAGILQPLFYSQSFPKSLNFGGIGVVIGHEITH 315
NAF + + + + G+L ++ V+ HE++H
Sbjct: 55 NAFATGAKRDDSLVAVSTGLLH----------NMTRDEAEAVLAHEVSH 93
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin,
fusion protein, fluore protein, transcription; HET: CR2;
1.40A {Aequorea victoria} PDB: 3ako_B*
Length = 307
Score = 28.2 bits (62), Expect = 6.0
Identities = 28/165 (16%), Positives = 57/165 (34%), Gaps = 25/165 (15%)
Query: 283 PAGILQPLFYSQSFP------KSLNF--GGIGVV------IGHEITHGFDDKGRQFDKDG 328
P + Q F+ + P +++ F G G + + + KG F +DG
Sbjct: 76 PDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDG 135
Query: 329 NM----IEWWNNA---TIRAFRERAQCMIDQYSRYKLDEVDMHINGRMTQGENIADNGGL 381
N+ +E+ N+ I A +++ ++ R+ +++ + + Q I D
Sbjct: 136 NILGHKLEYNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGD---- 191
Query: 382 KQSFRAYRKWVAAYGAEPLLPGLNLTHNQLFFLNYAQIWCGQMRP 426
+++ A P H L A G M+
Sbjct: 192 GPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGITGSMQI 236
>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD,
structural genomics, NPPSFA; HET: NAD MES; 1.60A
{Pyrococcus horikoshii} PDB: 1ww8_A*
Length = 439
Score = 27.9 bits (63), Expect = 7.1
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 427 EDALTKVRSANHPPGKFRILG--PLSNSRDFSEAY 459
E AL ++ GK ++ L + + + AY
Sbjct: 4 EKALEFHKNNFPGNGKIEVIPKVSLESREELTLAY 38
>2wag_A Lysozyme, putative; hydrolase, GH25, lysin; 1.40A {Bacillus
anthracis}
Length = 220
Score = 27.4 bits (61), Expect = 9.7
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 381 LKQSFRAYRKWVAAYGAEPLLPG 403
+K ++ W+ + +P L
Sbjct: 154 IKDAYPQCDIWIRSVLTKPSLSD 176
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.413
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,380,464
Number of extensions: 444095
Number of successful extensions: 1235
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1214
Number of HSP's successfully gapped: 36
Length of query: 476
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 379
Effective length of database: 3,993,456
Effective search space: 1513519824
Effective search space used: 1513519824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.6 bits)