RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5137
(476 letters)
>d1dmta_ d.92.1.4 (A:) Neutral endopeptidase (neprilysin) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 696
Score = 340 bits (873), Expect = e-110
Identities = 184/438 (42%), Positives = 254/438 (57%), Gaps = 53/438 (12%)
Query: 41 LRVIHNYALWKLVLATVGSHMIGEFQEKKIEFKRILLGVQSEKARWRDCVEWTNKKMGMA 100
R + N W+ ++ V S + ++E + F++ L G SE A WR C + N M A
Sbjct: 310 ARDLQNLMSWRFIMDLV-SSLSRTYKESRNAFRKALYGTTSETATWRRCANYVNGNMENA 368
Query: 101 VGSLFIRDNFNQESKETASEMIKSLREAFNELLDENHWMDNDTRSVAKEKANAMMERIGY 160
VG L++ F ESK ++I +RE F + LD+ WMD +T+ A+EKA A+ ERIGY
Sbjct: 369 VGRLYVEAAFAGESKHVVEDLIAQIREVFIQTLDDLTWMDAETKKRAEEKALAIKERIGY 428
Query: 161 PETL-TNPVELTKEYLNATLTEVDRHDNAYWYHKLTLQQLQDLVPQFNWLQYLSSFLTIK 219
P+ + +N +L EY
Sbjct: 429 PDDIVSNDNKLNNEY--------------------------------------------- 443
Query: 220 IDSNESLLNITKDHFLENIFNLLKFDAYQNLQKLRQPVNKDQWTTDPAIVNAFYNPNKNE 279
LN +D + ENI LKF + L+KLR+ V+KD+W + A+VNAFY+ +N+
Sbjct: 444 -----LELNYKEDEYFENIIQNLKFSQSKQLKKLREKVDKDEWISGAAVVNAFYSSGRNQ 498
Query: 280 IVLPAGILQPLFYSQSFPKSLNFGGIGVVIGHEITHGFDDKGRQFDKDGNMIEWWNNATI 339
IV PAGILQP F+S SLN+GGIG+VIGHEITHGFDD GR F+KDG++++WW +
Sbjct: 499 IVFPAGILQPPFFSAQQSNSLNYGGIGMVIGHEITHGFDDNGRNFNKDGDLVDWWTQQSA 558
Query: 340 RAFRERAQCMIDQYSRYKLDEVD-MHINGRMTQGENIADNGGLKQSFRAYRKWVAAYGAE 398
F+E++QCM+ QY + D H+NG T GENIADNGGL Q++RAY+ ++ G E
Sbjct: 559 SNFKEQSQCMVYQYGNFSWDLAGGQHLNGINTLGENIADNGGLGQAYRAYQNYIKKNGEE 618
Query: 399 PLLPGLNLTHNQLFFLNYAQIWCGQMRPEDALTKVRSANHPPGKFRILGPLSNSRDFSEA 458
LLPGL+L H QLFFLN+AQ+WCG RPE A+ +++ H PG FRI+G L NS +FSEA
Sbjct: 619 KLLPGLDLNHKQLFFLNFAQVWCGTYRPEYAVNSIKTDVHSPGNFRIIGTLQNSAEFSEA 678
Query: 459 YNCPLGTRMNPVAKCSVW 476
++C + MNP KC VW
Sbjct: 679 FHCRKNSYMNPEKKCRVW 696
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein
phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 588
Score = 28.2 bits (61), Expect = 2.9
Identities = 18/158 (11%), Positives = 46/158 (29%)
Query: 86 WRDCVEWTNKKMGMAVGSLFIRDNFNQESKETASEMIKSLREAFNELLDENHWMDNDTRS 145
+D + + + Q S+ +++ +A +
Sbjct: 372 LKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAG 431
Query: 146 VAKEKANAMMERIGYPETLTNPVELTKEYLNATLTEVDRHDNAYWYHKLTLQQLQDLVPQ 205
+ L + V +E + L ++ W H + ++ +
Sbjct: 432 QLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGD 491
Query: 206 FNWLQYLSSFLTIKIDSNESLLNITKDHFLENIFNLLK 243
N+L +++ I + S +IT H L + +
Sbjct: 492 PNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAG 529
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli
[TaxId: 562]}
Length = 63
Score = 25.4 bits (56), Expect = 3.5
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 7/40 (17%)
Query: 356 YKLDEVDMHI------NGRMTQGENIADNGGLKQSFRAYR 389
Y +D +D I N R E +A G+ R
Sbjct: 1 YLIDNLDRGILEALMGNARTAYAE-LAKQFGVSPETIHVR 39
>d2vapa2 d.79.2.1 (A:232-354) Cell-division protein FtsZ {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 123
Score = 26.5 bits (58), Expect = 4.0
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 141 NDTRSVAKEKANAMMERIGYPETLTNPVELTKEYLNATLTEVDRHDNA 188
D ++V AM+ IG ++ E LN+ L +VD D A
Sbjct: 6 ADVKAVMNNGGLAMI-GIGESDSEKRAKEAVSMALNSPLLDVD-IDGA 51
>d1bqba_ d.92.1.2 (A:) Aureolysin {Staphylococcus aureus [TaxId:
1280]}
Length = 301
Score = 27.3 bits (60), Expect = 4.6
Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 15/89 (16%)
Query: 233 HFLENIFNLLKFDAYQNLQKLRQPVNKDQWTTDPAIVNAFYNPNKNEIVLPAGILQPLFY 292
+ +N F +D + + + + + NA + +K + Y
Sbjct: 79 DYYKNTFGRESYD--NHGSPIVSLTHVNHYGGQDNRNNAAWIGDK------------MIY 124
Query: 293 SQSFPKSLN-FGGIGVVIGHEITHGFDDK 320
++ G V+ HEITHG +
Sbjct: 125 GDGDGRTFTNLSGANDVVAHEITHGVTQQ 153
>d2r7ka1 c.30.1.8 (A:1-123) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Methanocaldococcus
jannaschii [TaxId: 2190]}
Length = 123
Score = 25.8 bits (57), Expect = 5.4
Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 35 IAKIDFLRVIHNYALWKLVLATVGSHMIGEFQE--KKIEFKRILLGVQSEKARWRDCVEW 92
I+K + L + Y ++ +AT+GSH + K F + + + K R +
Sbjct: 2 ISKDEILEIFDKYNKDEITIATLGSHTSLHILKGAKLEGFSTVCI---TMKGR-----DV 53
Query: 93 TNKKMGMAVGSLFIRDNFNQ-ESKETASEMIKS 124
K+ +A DNF+ +++E ++ +
Sbjct: 54 PYKRFKVA-DKFIYVDNFSDIKNEEIQEKLREL 85
>d2sasa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein
{Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}
Length = 185
Score = 26.1 bits (56), Expect = 7.5
Identities = 10/117 (8%), Positives = 36/117 (30%), Gaps = 2/117 (1%)
Query: 120 EMIKSLREAFNELLDENH--WMDNDTRSVAKEKANAMMERIGYPETLTNPVELTKEYLNA 177
+ ++ F+ LD NH + ++ + + + + ++
Sbjct: 5 FQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRD 64
Query: 178 TLTEVDRHDNAYWYHKLTLQQLQDLVPQFNWLQYLSSFLTIKIDSNESLLNITKDHF 234
D + + + L + + + L ++ +I ++++ D
Sbjct: 65 LKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGI 121
>d1zeea1 a.266.1.2 (A:6-392) Hypothetical protein SO4414 {Shewanella
oneidensis [TaxId: 70863]}
Length = 387
Score = 26.4 bits (58), Expect = 8.4
Identities = 17/85 (20%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 116 ETASEMIKSLREAFNELLDENHWMDNDTRSV-AKEKANAMMERIGYPETLTNPV--ELTK 172
T + + + F +L DE ++D +T+ + A ++A+ + +I P +++P+ +L +
Sbjct: 125 TTHNRAHNGIYKRFTDLPDEKLFVDYNTKGILAYKRASDALLKI-QPLGISHPISHDLLR 183
Query: 173 EYLNATLTEVDRHDNAYWYHKLTLQ 197
L +V N +++L
Sbjct: 184 V-TKQALQDVIES-NQQLFNRLDTD 206
>d1df0a1 a.39.1.8 (A:515-700) Calpain large subunit, C-terminal
domain (domain IV) {Rat (Rattus norvegicus), M-type
[TaxId: 10116]}
Length = 186
Score = 25.9 bits (56), Expect = 9.1
Identities = 12/101 (11%), Positives = 32/101 (31%), Gaps = 11/101 (10%)
Query: 112 QESKETASEMIKSLREAFNELLDENHWMDNDTRSVAKEKANAMMERIGYPETLTNPVELT 171
+E + ++ R F +L + ++ + ++ R+ +
Sbjct: 7 EEIEANEEDIGDGFRRLFAQL-------AGEDAEISAFELQTILRRVLAKREDIKSDGFS 59
Query: 172 KEYLNATLTEVDRHDNAYWYHKLTLQQLQDLVPQFNWLQYL 212
E + +D + KL L++ L + Q +
Sbjct: 60 IETCKIMVDMLDEDGSG----KLGLKEFYILWTKIQKYQKI 96
>d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 366
Score = 26.1 bits (56), Expect = 9.6
Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 115 KETASEMIKSLREAFNEL-----LDENHWMDNDTRSVAKEKANAMMERIGYPETLTNPVE 169
+E + + I+ E + L L++ + + +R + A A ET+ N
Sbjct: 288 EEHSQQEIERYIELYLCLDLPVTLEDIK-LKDASREDILKVAKAATAE---GETIHNAFN 343
Query: 170 LTKEYLNATLTEVDRHDNAY 189
+T + + + D++ AY
Sbjct: 344 VTADDVADAIFAADQYAKAY 363
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.413
Gapped
Lambda K H
0.267 0.0543 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,832,340
Number of extensions: 86182
Number of successful extensions: 280
Number of sequences better than 10.0: 1
Number of HSP's gapped: 279
Number of HSP's successfully gapped: 23
Length of query: 476
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 387
Effective length of database: 1,185,626
Effective search space: 458837262
Effective search space used: 458837262
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.4 bits)