BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5138
(575 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|B Chain B, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|C Chain C, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|D Chain D, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
Length = 404
Score = 399 bits (1024), Expect = e-111, Method: Compositional matrix adjust.
Identities = 206/412 (50%), Positives = 258/412 (62%), Gaps = 85/412 (20%)
Query: 213 QPFIKQASMAKYFASVAKLAKETIAPYVQKMESEEKIDETVLKTLFESGL---------- 262
Q F + M K +SV K A+E IAP V M+ K++++V++ LF+ GL
Sbjct: 27 QTFTDEEMMIK--SSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYG 84
Query: 263 -----------------------------------------GTTEQKEKYLPRLAQTDAG 281
GT EQK YLP+L G
Sbjct: 85 GTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTEKVG 144
Query: 282 SFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGYRGI 341
SF LSE G+GSD+FA+KT A K+G++Y+LNGSKMWIS+A+ A +FLVMANVD + GY+GI
Sbjct: 145 SFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGI 204
Query: 342 TCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQ 401
T F+V+R G +GK ENKLG++AS TC L F+NV+VPE NI+ +G GYK A G LN+
Sbjct: 205 TSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLNE 264
Query: 402 GRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYN 461
GRIGIAAQM GLAQGC D TIPY ER QFG R+FDFQ +QHQ++ ATQ+E ARLLTYN
Sbjct: 265 GRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVATQLEAARLLTYN 324
Query: 462 AARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGH 521
AARLLEAG+PFIK+ASMAKY+ASE+AG T +CI+WMGG+G+TKDYP EK++
Sbjct: 325 AARLLEAGKPFIKEASMAKYYASEIAGQTTSKCIEWMGGVGYTKDYPVEKYF-------- 376
Query: 522 ITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNIQLSTIAKYIAKEY 573
RD K+GTIYEG SNIQL+TIAK+I EY
Sbjct: 377 ------------------------RDAKIGTIYEGASNIQLNTIAKHIDAEY 404
Score = 303 bits (777), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 147/242 (60%), Positives = 184/242 (76%), Gaps = 7/242 (2%)
Query: 2 TTEQKEKYLPRLAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIA 61
T EQK YLP+L GSF LSE G+GSD+FA+KT A K+G++Y+LNGSKMWIS+A+ A
Sbjct: 127 TEEQKATYLPQLTTEKVGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHA 186
Query: 62 NIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEEN 121
+FLVMANVD + GY+GIT F+V+R G +GK ENKLG++AS TC L F+NV+VPE N
Sbjct: 187 GLFLVMANVDPTIGYKGITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEAN 246
Query: 122 IISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACNG 181
I+ +G GYK A G LN+GRIGIAAQM GLAQGC D TIPY ER Q G R+FDFQ
Sbjct: 247 ILGQIGHGYKYAIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQG--- 303
Query: 182 GSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFASVAKLAKETIAPYVQ 241
+QHQ++ TQ+E ARLLTYNAARLLEAG+PFIK+ASMAKY+AS ++A +T + ++
Sbjct: 304 --LQHQVAHVATQLEAARLLTYNAARLLEAGKPFIKEASMAKYYAS--EIAGQTTSKCIE 359
Query: 242 KM 243
M
Sbjct: 360 WM 361
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
pdb|1JQI|B Chain B, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
Length = 388
Score = 229 bits (584), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 121/315 (38%), Positives = 186/315 (59%), Gaps = 33/315 (10%)
Query: 262 LGTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNA 320
G+++QK++++ D G FALSEPG+GSDA A TTA ++G+ ++LNG+K WI+N+
Sbjct: 106 FGSSQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNS 165
Query: 321 DIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVP 380
A+ +V A+ D S+ +GI+ F+V G ++GKKE+KLG++AS T +L F++ R+P
Sbjct: 166 WEASATVVFASTDRSRQNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIP 225
Query: 381 EENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQS 440
+EN++ G G+KIA L+ GRIGIA+Q G+AQ LD + Y R FG + Q+
Sbjct: 226 KENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQASLDCAVKYAENRHAFGAPLTKLQN 285
Query: 441 VQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMGG 500
+Q +++ A +E ARLLT+ AA L + +PF K+++MAK ASE A I+ Q I +GG
Sbjct: 286 IQFKLADMALALESARLLTWRAAMLKDNKKPFTKESAMAKLAASEAATAISHQAIQILGG 345
Query: 501 LGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNI 560
+G+ + P E++Y RD ++ IYEGTS I
Sbjct: 346 MGYVTEMPAERYY--------------------------------RDARITEIYEGTSEI 373
Query: 561 QLSTIAKYIAKEYTS 575
Q IA ++ + Y S
Sbjct: 374 QRLVIAGHLLRSYRS 388
Score = 181 bits (459), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 104/273 (38%), Positives = 164/273 (60%), Gaps = 16/273 (5%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 60
+++QK++++ D G FALSEPG+GSDA A TTA ++G+ ++LNG+K WI+N+
Sbjct: 108 SSQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWE 167
Query: 61 ANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEE 120
A+ +V A+ D S+ +GI+ F+V G ++GKKE+KLG++AS T +L F++ R+P+E
Sbjct: 168 ASATVVFASTDRSRQNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKE 227
Query: 121 NIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACN 180
N++ G G+KIA L+ GRIGIA+Q G+AQ LD + Y R G + Q
Sbjct: 228 NLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQASLDCAVKYAENRHAFGAPLTKLQ--- 284
Query: 181 GGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFASVAKLAKETIA--- 237
++Q +++ +E ARLLT+ AA L + +PF K+++MAK AS A A A
Sbjct: 285 --NIQFKLADMALALESARLLTWRAAMLKDNKKPFTKESAMAKLAASEAATAISHQAIQI 342
Query: 238 ----PYVQKMESEEKIDETVLKTLFESGLGTTE 266
YV +M +E + + ++E GT+E
Sbjct: 343 LGGMGYVTEMPAERYYRDARITEIYE---GTSE 372
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|B Chain B, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|C Chain C, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|D Chain D, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|E Chain E, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|F Chain F, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|G Chain G, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|H Chain H, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
Length = 391
Score = 219 bits (558), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 121/315 (38%), Positives = 179/315 (56%), Gaps = 33/315 (10%)
Query: 262 LGTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNA 320
G+ EQK+ ++ D G FALSEPG+GSDA A TTA +G+ ++LNG+K WI+NA
Sbjct: 102 FGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNA 161
Query: 321 DIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVP 380
A+ +V A+ D + + I+ F+V G ++GKKE+KLG++ S T +L F++ R+P
Sbjct: 162 WEASAAVVFASTDRALQNKSISAFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIP 221
Query: 381 EENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQS 440
+++I+ G G+KIA L+ GRIGIA+Q G+AQ LD + Y R FG + Q
Sbjct: 222 KDSILGEPGMGFKIAMQTLDMGRIGIASQALGIAQTALDCAVNYAENRMAFGAPLTKLQV 281
Query: 441 VQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMGG 500
+Q +++ A +E ARLLT+ AA L + +PFIK+A+MAK ASE A I+ Q I +GG
Sbjct: 282 IQFKLADMALALESARLLTWRAAMLKDNKKPFIKEAAMAKLAASEAATAISHQAIQILGG 341
Query: 501 LGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNI 560
+G+ + P E+ Y RD ++ IYEGTS I
Sbjct: 342 MGYVTEMPAERHY--------------------------------RDARITEIYEGTSEI 369
Query: 561 QLSTIAKYIAKEYTS 575
Q IA ++ + Y S
Sbjct: 370 QRLVIAGHLLRSYRS 384
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/273 (38%), Positives = 158/273 (57%), Gaps = 16/273 (5%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 60
+ EQK+ ++ D G FALSEPG+GSDA A TTA +G+ ++LNG+K WI+NA
Sbjct: 104 SKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAWE 163
Query: 61 ANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEE 120
A+ +V A+ D + + I+ F+V G ++GKKE+KLG++ S T +L F++ R+P++
Sbjct: 164 ASAAVVFASTDRALQNKSISAFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKD 223
Query: 121 NIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACN 180
+I+ G G+KIA L+ GRIGIA+Q G+AQ LD + Y R G + Q
Sbjct: 224 SILGEPGMGFKIAMQTLDMGRIGIASQALGIAQTALDCAVNYAENRMAFGAPLTKLQV-- 281
Query: 181 GGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFASVAKLAKETIA--- 237
+Q +++ +E ARLLT+ AA L + +PFIK+A+MAK AS A A A
Sbjct: 282 ---IQFKLADMALALESARLLTWRAAMLKDNKKPFIKEAAMAKLAASEAATAISHQAIQI 338
Query: 238 ----PYVQKMESEEKIDETVLKTLFESGLGTTE 266
YV +M +E + + ++E GT+E
Sbjct: 339 LGGMGYVTEMPAERHYRDARITEIYE---GTSE 368
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
pdb|1UKW|B Chain B, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
Length = 379
Score = 218 bits (555), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 122/308 (39%), Positives = 170/308 (55%), Gaps = 33/308 (10%)
Query: 263 GTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 321
GT EQKE++L L + A +FALSEPG+GSDA A+KT A + G+HY+LNG+KMWISN
Sbjct: 101 GTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGG 160
Query: 322 IANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPE 381
A +V A V+ ++G+ +VER GF K K+G +ASGT L F++V+VP
Sbjct: 161 EAEWVVVFATVNPELRHKGVVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPV 220
Query: 382 ENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSV 441
EN + GEG+KIA LN+ RI +AA G+A+ LD Y ER FG I +FQ++
Sbjct: 221 ENRLGEEGEGFKIAMQTLNKTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQAI 280
Query: 442 QHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMGGL 501
Q ++ +E AR+ TY AA L + G P +++AK +ASE+A Q I GG
Sbjct: 281 QFKLVDMLIGIETARMYTYYAAWLADQGLPHAHASAIAKAYASEIAFEAANQAIQIHGGY 340
Query: 502 GFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNIQ 561
G+ +++P EK RD K+ IYEGT+ IQ
Sbjct: 341 GYVREFPVEKLLRDVKL--------------------------------NQIYEGTNEIQ 368
Query: 562 LSTIAKYI 569
IA++I
Sbjct: 369 RLIIARHI 376
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/227 (43%), Positives = 137/227 (60%), Gaps = 6/227 (2%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 60
T EQKE++L L + A +FALSEPG+GSDA A+KT A + G+HY+LNG+KMWISN
Sbjct: 102 TEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGE 161
Query: 61 ANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEE 120
A +V A V+ ++G+ +VER GF K K+G +ASGT L F++V+VP E
Sbjct: 162 AEWVVVFATVNPELRHKGVVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVE 221
Query: 121 NIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACN 180
N + GEG+KIA LN+ RI +AA G+A+ LD Y ER G I +FQA
Sbjct: 222 NRLGEEGEGFKIAMQTLNKTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQA-- 279
Query: 181 GGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFAS 227
+Q ++ + +E AR+ TY AA L + G P +++AK +AS
Sbjct: 280 ---IQFKLVDMLIGIETARMYTYYAAWLADQGLPHAHASAIAKAYAS 323
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|B Chain B, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|C Chain C, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|D Chain D, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
Length = 393
Score = 218 bits (554), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 161/260 (61%), Gaps = 6/260 (2%)
Query: 263 GTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 321
G+ E K++ LP +A +A S+ALSE +GSDA +M+T A DG+ +ILNGSK WI+N
Sbjct: 115 GSEELKKQVLPAVASGEAMASYALSEREAGSDAASMRTRAVADGDDWILNGSKCWITNGG 174
Query: 322 IANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPE 381
+ + VMA D KG GI+ F+V + EGF+VG KE KLG+K S T L+F+N R+P
Sbjct: 175 KSTWYTVMAVTDPDKGANGISAFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPG 234
Query: 382 ENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSV 441
+ II G G+K A L+ R I AQ G+AQG LDA I YT ER QFG + D Q V
Sbjct: 235 DRIIGEPGTGFKTALATLDHTRPTIGAQAVGIAQGALDAAIAYTKERKQFGRPVSDNQGV 294
Query: 442 QHQISQAATQVECARLLTYNAARLLEAGQ---PFIKQASMAKYFASEMAGHITRQCIDWM 498
Q ++ A ++E ARL+ Y+AA E G+ FI AS K FAS++A +T +
Sbjct: 295 QFMLADMAMKIEAARLMVYSAAARAERGEGDLGFISAAS--KCFASDVAMEVTTDAVQLF 352
Query: 499 GGLGFTKDYPQEKFYRDCKM 518
GG G+T+D+P E+ RD K+
Sbjct: 353 GGYGYTQDFPVERMMRDAKI 372
Score = 175 bits (444), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 103/230 (44%), Positives = 137/230 (59%), Gaps = 11/230 (4%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 60
+ E K++ LP +A +A S+ALSE +GSDA +M+T A DG+ +ILNGSK WI+N
Sbjct: 116 SEELKKQVLPAVASGEAMASYALSEREAGSDAASMRTRAVADGDDWILNGSKCWITNGGK 175
Query: 61 ANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEE 120
+ + VMA D KG GI+ F+V + EGF+VG KE KLG+K S T L+F+N R+P +
Sbjct: 176 STWYTVMAVTDPDKGANGISAFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGD 235
Query: 121 NIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACN 180
II G G+K A L+ R I AQ G+AQG LDA I YT ER Q G + D Q
Sbjct: 236 RIIGEPGTGFKTALATLDHTRPTIGAQAVGIAQGALDAAIAYTKERKQFGRPVSDNQG-- 293
Query: 181 GGSVQHQISQAVTQVECARLLTYNAARLLEAGQ---PFIKQASMAKYFAS 227
VQ ++ ++E ARL+ Y+AA E G+ FI AS K FAS
Sbjct: 294 ---VQFMLADMAMKIEAARLMVYSAAARAERGEGDLGFISAAS--KCFAS 338
>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
pdb|1BUC|B Chain B, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
Length = 383
Score = 213 bits (541), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 120/303 (39%), Positives = 175/303 (57%), Gaps = 34/303 (11%)
Query: 262 LGTTEQKEKYL-PRLAQTDAGSFALSEPGSGSDAFAMKTTATK-DGNHYILNGSKMWISN 319
GT QKEK+L P + T G+F L+EP +G+DA +T ATK D Y LNGSK++I+N
Sbjct: 104 FGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITN 163
Query: 320 ADIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRV 379
A+I++V A D SKG GIT FI+E GF+ GKKE+K+G+ S T L F +V+V
Sbjct: 164 GGAADIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKV 223
Query: 380 PEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQ 439
P EN++ G+G+KIA L+ GRIG+AAQ G+A+ L + Y+ +R QFG + FQ
Sbjct: 224 PAENMLGEEGKGFKIAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQ 283
Query: 440 SVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMG 499
S+ +++ Q+E AR L Y AA + G+PF A++AK AS++A +T + + G
Sbjct: 284 SISFKLADMKMQIEAARNLVYKAACKKQEGKPFTVDAAIAKRVASDVAMRVTTEAVQIFG 343
Query: 500 GLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSN 559
G G++++YP +A H+ RD K+ IYEGT+
Sbjct: 344 GYGYSEEYP---------VARHM-----------------------RDAKITQIYEGTNE 371
Query: 560 IQL 562
+QL
Sbjct: 372 VQL 374
Score = 175 bits (443), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 99/228 (43%), Positives = 140/228 (61%), Gaps = 7/228 (3%)
Query: 2 TTEQKEKYL-PRLAQTDAGSFALSEPGSGSDAFAMKTTATK-DGNHYILNGSKMWISNAD 59
T QKEK+L P + T G+F L+EP +G+DA +T ATK D Y LNGSK++I+N
Sbjct: 106 TEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGG 165
Query: 60 IANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPE 119
A+I++V A D SKG GIT FI+E GF+ GKKE+K+G+ S T L F +V+VP
Sbjct: 166 AADIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPA 225
Query: 120 ENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQAC 179
EN++ G+G+KIA L+ GRIG+AAQ G+A+ L + Y+ +R Q G + FQ
Sbjct: 226 ENMLGEEGKGFKIAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQ-- 283
Query: 180 NGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFAS 227
S+ +++ Q+E AR L Y AA + G+PF A++AK AS
Sbjct: 284 ---SISFKLADMKMQIEAARNLVYKAACKKQEGKPFTVDAAIAKRVAS 328
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain
Specificity: Crystal Structure Of Human Very-Long-Chain
Acyl-Coa Dehydrogenase
Length = 587
Score = 197 bits (501), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 156/266 (58%), Gaps = 9/266 (3%)
Query: 262 LGTTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKD--GNHYILNGSKMWIS 318
GT QKEKYLP+LA + +F L+EP SGSDA +++T+A G +Y LNGSK+WIS
Sbjct: 124 FGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWIS 183
Query: 319 NADIANIFLVMANVDVSKGYRG-----ITCFIVERSMEGFSVGKKENKLGMKASGTCSLH 373
N +A+IF V A V+ G IT F+VER G + G E K+G+KAS T +
Sbjct: 184 NGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGIKASNTAEVF 243
Query: 374 FDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGH 433
FD VRVP EN++ VG G+K+A LN GR G+AA + G +G + + + R+QFG
Sbjct: 244 FDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFGE 303
Query: 434 RIFDFQSVQHQISQAATQVECARLLTYN-AARLLEAGQPFIKQASMAKYFASEMAGHITR 492
+I +F +Q ++++ + Y +A + + F +A+++K F SE A +T
Sbjct: 304 KIHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQGATDFQIEAAISKIFGSEAAWKVTD 363
Query: 493 QCIDWMGGLGFTKDYPQEKFYRDCKM 518
+CI MGG+GF K+ E+ RD ++
Sbjct: 364 ECIQIMGGMGFMKEPGVERVLRDLRI 389
Score = 161 bits (408), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 92/237 (38%), Positives = 136/237 (57%), Gaps = 14/237 (5%)
Query: 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKD--GNHYILNGSKMWISNA 58
T QKEKYLP+LA + +F L+EP SGSDA +++T+A G +Y LNGSK+WISN
Sbjct: 126 TKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNG 185
Query: 59 DIANIFLVMANVDVSKGYRG-----ITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFD 113
+A+IF V A V+ G IT F+VER G + G E K+G+KAS T + FD
Sbjct: 186 GLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGIKASNTAEVFFD 245
Query: 114 NVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRI 173
VRVP EN++ VG G+K+A LN GR G+AA + G +G + + + R+Q G +I
Sbjct: 246 GVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFGEKI 305
Query: 174 FDFQACNGGSVQHQISQAVTQVECARLLTYN-AARLLEAGQPFIKQASMAKYFASVA 229
+F G +Q ++++ V + Y +A + + F +A+++K F S A
Sbjct: 306 HNF-----GLIQEKLARMVMLQYVTESMAYMVSANMDQGATDFQIEAAISKIFGSEA 357
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa
Dehydrogenase (acadvl)
Length = 607
Score = 197 bits (501), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 156/266 (58%), Gaps = 9/266 (3%)
Query: 262 LGTTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKD--GNHYILNGSKMWIS 318
GT QKEKYLP+LA + +F L+EP SGSDA +++T+A G +Y LNGSK+WIS
Sbjct: 144 FGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWIS 203
Query: 319 NADIANIFLVMANVDVSKGYRG-----ITCFIVERSMEGFSVGKKENKLGMKASGTCSLH 373
N +A+IF V A V+ G IT F+VER G + G E K+G+KAS T +
Sbjct: 204 NGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGIKASNTAEVF 263
Query: 374 FDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGH 433
FD VRVP EN++ VG G+K+A LN GR G+AA + G +G + + + R+QFG
Sbjct: 264 FDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFGE 323
Query: 434 RIFDFQSVQHQISQAATQVECARLLTYN-AARLLEAGQPFIKQASMAKYFASEMAGHITR 492
+I +F +Q ++++ + Y +A + + F +A+++K F SE A +T
Sbjct: 324 KIHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQGATDFQIEAAISKIFGSEAAWKVTD 383
Query: 493 QCIDWMGGLGFTKDYPQEKFYRDCKM 518
+CI MGG+GF K+ E+ RD ++
Sbjct: 384 ECIQIMGGMGFMKEPGVERVLRDLRI 409
Score = 161 bits (408), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 95/246 (38%), Positives = 140/246 (56%), Gaps = 16/246 (6%)
Query: 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKD--GNHYILNGSKMWISNA 58
T QKEKYLP+LA + +F L+EP SGSDA +++T+A G +Y LNGSK+WISN
Sbjct: 146 TKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNG 205
Query: 59 DIANIFLVMANVDVSKGYRG-----ITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFD 113
+A+IF V A V+ G IT F+VER G + G E K+G+KAS T + FD
Sbjct: 206 GLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGIKASNTAEVFFD 265
Query: 114 NVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRI 173
VRVP EN++ VG G+K+A LN GR G+AA + G +G + + + R+Q G +I
Sbjct: 266 GVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFGEKI 325
Query: 174 FDFQACNGGSVQHQISQAVTQVECARLLTYN-AARLLEAGQPFIKQASMAKYFASVA--K 230
+F G +Q ++++ V + Y +A + + F +A+++K F S A K
Sbjct: 326 HNF-----GLIQEKLARMVMLQYVTESMAYMVSANMDQGATDFQIEAAISKIFGSEAAWK 380
Query: 231 LAKETI 236
+ E I
Sbjct: 381 VTDECI 386
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|B Chain B, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|C Chain C, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|D Chain D, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
Length = 394
Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 102/259 (39%), Positives = 146/259 (56%), Gaps = 3/259 (1%)
Query: 263 GTTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 321
G QKEKYLP+L + G+ A+SEP +GSD +MK A K GNHYILNG+K WI+N
Sbjct: 112 GNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGP 171
Query: 322 IANIFLVMANVDVS--KGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRV 379
A++ +V A D++ RGIT FIVE+ M GFS KK +KLGM+ S TC L F++ ++
Sbjct: 172 DADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKI 231
Query: 380 PEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQ 439
P NI+ +G + L+ R+ +A GL Q LD TIPY R FG +I FQ
Sbjct: 232 PAANILGHENKGVYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQ 291
Query: 440 SVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMG 499
+Q +++ T++ R YN A+ + G K + +++E A + I G
Sbjct: 292 LMQGKMADMYTRLMACRQYVYNVAKACDEGHCTAKDCAGVILYSAECATQVALDGIQCFG 351
Query: 500 GLGFTKDYPQEKFYRDCKM 518
G G+ D+P +F RD K+
Sbjct: 352 GNGYINDFPMGRFLRDAKL 370
Score = 161 bits (408), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 100/284 (35%), Positives = 148/284 (52%), Gaps = 16/284 (5%)
Query: 5 QKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANI 63
QKEKYLP+L + G+ A+SEP +GSD +MK A K GNHYILNG+K WI+N A++
Sbjct: 116 QKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADV 175
Query: 64 FLVMANVDVS--KGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEEN 121
+V A D++ RGIT FIVE+ M GFS KK +KLGM+ S TC L F++ ++P N
Sbjct: 176 LIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAAN 235
Query: 122 IISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACNG 181
I+ +G + L+ R+ +A GL Q LD TIPY R G +I FQ
Sbjct: 236 ILGHENKGVYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQL--- 292
Query: 182 GSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFASVAKLAKETIAPYVQ 241
+Q +++ T++ R YN A+ + G K + ++ A+ A + +Q
Sbjct: 293 --MQGKMADMYTRLMACRQYVYNVAKACDEGHCTAKDCAGVILYS--AECATQVALDGIQ 348
Query: 242 KMESEEKIDETVL------KTLFESGLGTTEQKEKYLPRLAQTD 279
I++ + L+E G GT+E + + R D
Sbjct: 349 CFGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRAFNAD 392
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase
pdb|2Z1Q|B Chain B, Crystal Structure Of Acyl Coa Dehydrogenase
Length = 577
Score = 189 bits (479), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 104/273 (38%), Positives = 155/273 (56%), Gaps = 21/273 (7%)
Query: 263 GTTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTAT--KDGNHYILNGSKMWISN 319
GT EQK KYLP+LA + ++ L+EPGSGSDA A KT AT +DG HYILNG K WISN
Sbjct: 125 GTEEQKRKYLPKLASGEWIAAYCLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISN 184
Query: 320 ADIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRV 379
A A++F V A VD T F+VER G S G +E K+G+KAS T + ++V+V
Sbjct: 185 AGFAHLFTVFAKVDGEH----FTAFLVERDTPGLSFGPEEKKMGIKASSTRQVILEDVKV 240
Query: 380 PEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQ 439
P EN++ +G+G+KIA LN GR + A G A+ L+ + Y +R QFG I F
Sbjct: 241 PVENVLGEIGKGHKIAFNVLNVGRYKLGAGAVGGAKRALELSAQYATQRVQFGRPIGRFG 300
Query: 440 SVQHQISQAATQVECARLLTYNAARLLEAG--------------QPFIKQASMAKYFASE 485
+Q ++ + A+++ A Y L++ + + +AS+ K SE
Sbjct: 301 LIQQKLGEMASRIYAAESAVYRTVGLIDEALLGKKGPEAVMAGIEEYAVEASIIKVLGSE 360
Query: 486 MAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKM 518
+ ++ + + GG G++++YP E+ YRD ++
Sbjct: 361 VLDYVVDEGVQIHGGYGYSQEYPIERAYRDARI 393
Score = 155 bits (391), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 88/212 (41%), Positives = 123/212 (58%), Gaps = 12/212 (5%)
Query: 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTAT--KDGNHYILNGSKMWISNA 58
T EQK KYLP+LA + ++ L+EPGSGSDA A KT AT +DG HYILNG K WISNA
Sbjct: 126 TEEQKRKYLPKLASGEWIAAYCLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNA 185
Query: 59 DIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVP 118
A++F V A VD T F+VER G S G +E K+G+KAS T + ++V+VP
Sbjct: 186 GFAHLFTVFAKVDGEH----FTAFLVERDTPGLSFGPEEKKMGIKASSTRQVILEDVKVP 241
Query: 119 EENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQA 178
EN++ +G+G+KIA LN GR + A G A+ L+ + Y +R Q G I F
Sbjct: 242 VENVLGEIGKGHKIAFNVLNVGRYKLGAGAVGGAKRALELSAQYATQRVQFGRPIGRF-- 299
Query: 179 CNGGSVQHQISQAVTQVECARLLTYNAARLLE 210
G +Q ++ + +++ A Y L++
Sbjct: 300 ---GLIQQKLGEMASRIYAAESAVYRTVGLID 328
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
pdb|3NF4|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
Length = 387
Score = 186 bits (471), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 101/258 (39%), Positives = 154/258 (59%), Gaps = 3/258 (1%)
Query: 262 LGTTEQKEKYLP-RLAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNA 320
GT EQK+++LP L+ G+++LSEP +GSDA A++ AT Y++NGSK WI++
Sbjct: 111 FGTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHG 170
Query: 321 DIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVP 380
A+ + + A +G RG++CF+V G S GK E K+G+ A T S +DN R+
Sbjct: 171 GKADFYTLFART--GEGSRGVSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARID 228
Query: 381 EENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQS 440
+ I G+G +IA L+ GR+GIAA TGLAQ LD + Y ER+ FG +I D Q
Sbjct: 229 ADRRIGEEGQGLQIAFSALDSGRLGIAAVATGLAQAALDEAVAYANERTAFGRKIIDHQG 288
Query: 441 VQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMGG 500
+ ++ A V AR +AAR + G+P+ +QAS+AK A++ A +T + GG
Sbjct: 289 LGFLLADMAAAVATARATYLDAARRRDQGRPYSQQASIAKLTATDAAMKVTTDAVQVFGG 348
Query: 501 LGFTKDYPQEKFYRDCKM 518
+G+T+DY E++ R+ K+
Sbjct: 349 VGYTRDYRVERYMREAKI 366
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/266 (35%), Positives = 142/266 (53%), Gaps = 15/266 (5%)
Query: 2 TTEQKEKYLP-RLAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 60
T EQK+++LP L+ G+++LSEP +GSDA A++ AT Y++NGSK WI++
Sbjct: 113 TEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGGK 172
Query: 61 ANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEE 120
A+ + + A +G RG++CF+V G S GK E K+G+ A T S +DN R+ +
Sbjct: 173 ADFYTLFART--GEGSRGVSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARIDAD 230
Query: 121 NIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACN 180
I G+G +IA L+ GR+GIAA TGLAQ LD + Y ER+ G +I D Q
Sbjct: 231 RRIGEEGQGLQIAFSALDSGRLGIAAVATGLAQAALDEAVAYANERTAFGRKIIDHQGLG 290
Query: 181 GGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFASVAKLAKETIAP-- 238
++ V AR +AAR + G+P+ +QAS+AK A+ A + T A
Sbjct: 291 -----FLLADMAAAVATARATYLDAARRRDQGRPYSQQASIAKLTATDAAMKVTTDAVQV 345
Query: 239 -----YVQKMESEEKIDETVLKTLFE 259
Y + E + E + +FE
Sbjct: 346 FGGVGYTRDYRVERYMREAKIMQIFE 371
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGC|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
Length = 396
Score = 184 bits (468), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 97/260 (37%), Positives = 152/260 (58%), Gaps = 4/260 (1%)
Query: 263 GTTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 321
G +QK+KYL R+ + ++ ++EPG+GSD +KT A K G+ YI+NG KMWI+N
Sbjct: 112 GNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGG 171
Query: 322 IANIFLVMANVDV---SKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVR 378
AN + ++A D + + T FIVE G +G+KE +G + S T + F++V+
Sbjct: 172 KANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVK 231
Query: 379 VPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDF 438
VP+EN++ G G G+K+A G ++ R +AA GLAQ LD Y LER FG + +
Sbjct: 232 VPKENVLIGDGAGFKVAMGAFDKERPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEH 291
Query: 439 QSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWM 498
Q++ +++ A +VE AR+ AA +++G+ AS+AK FA ++A + + +
Sbjct: 292 QAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQIL 351
Query: 499 GGLGFTKDYPQEKFYRDCKM 518
GG GF +YP EK RD K+
Sbjct: 352 GGNGFNTEYPVEKLMRDAKI 371
Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 130/227 (57%), Gaps = 9/227 (3%)
Query: 4 EQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIAN 62
+QK+KYL R+ + ++ ++EPG+GSD +KT A K G+ YI+NG KMWI+N AN
Sbjct: 115 QQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKAN 174
Query: 63 IFLVMANVDV---SKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPE 119
+ ++A D + + T FIVE G +G+KE +G + S T + F++V+VP+
Sbjct: 175 WYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPK 234
Query: 120 ENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQAC 179
EN++ G G G+K+A G ++ R +AA GLAQ LD Y LER G + + QA
Sbjct: 235 ENVLIGDGAGFKVAMGAFDKERPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQA- 293
Query: 180 NGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFA 226
+ +++ +VE AR+ AA +++G+ AS+AK FA
Sbjct: 294 ----ISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFA 336
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1T9G|A Chain A, Structure Of The Human Mcad:etf Complex
pdb|1T9G|B Chain B, Structure Of The Human Mcad:etf Complex
pdb|1T9G|C Chain C, Structure Of The Human Mcad:etf Complex
pdb|1T9G|D Chain D, Structure Of The Human Mcad:etf Complex
Length = 396
Score = 184 bits (468), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 97/260 (37%), Positives = 152/260 (58%), Gaps = 4/260 (1%)
Query: 263 GTTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 321
G +QK+KYL R+ + ++ ++EPG+GSD +KT A K G+ YI+NG KMWI+N
Sbjct: 112 GNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGG 171
Query: 322 IANIFLVMANVDV---SKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVR 378
AN + ++A D + + T FIVE G +G+KE +G + S T + F++V+
Sbjct: 172 KANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVK 231
Query: 379 VPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDF 438
VP+EN++ G G G+K+A G ++ R +AA GLAQ LD Y LER FG + +
Sbjct: 232 VPKENVLIGDGAGFKVAMGAFDKTRPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEH 291
Query: 439 QSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWM 498
Q++ +++ A +VE AR+ AA +++G+ AS+AK FA ++A + + +
Sbjct: 292 QAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQIL 351
Query: 499 GGLGFTKDYPQEKFYRDCKM 518
GG GF +YP EK RD K+
Sbjct: 352 GGNGFNTEYPVEKLMRDAKI 371
Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 130/227 (57%), Gaps = 9/227 (3%)
Query: 4 EQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIAN 62
+QK+KYL R+ + ++ ++EPG+GSD +KT A K G+ YI+NG KMWI+N AN
Sbjct: 115 QQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKAN 174
Query: 63 IFLVMANVDV---SKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPE 119
+ ++A D + + T FIVE G +G+KE +G + S T + F++V+VP+
Sbjct: 175 WYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPK 234
Query: 120 ENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQAC 179
EN++ G G G+K+A G ++ R +AA GLAQ LD Y LER G + + QA
Sbjct: 235 ENVLIGDGAGFKVAMGAFDKTRPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQA- 293
Query: 180 NGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFA 226
+ +++ +VE AR+ AA +++G+ AS+AK FA
Sbjct: 294 ----ISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFA 336
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|B Chain B, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|C Chain C, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|D Chain D, Structure Of The Human Mcad:etf E165betaa Complex
Length = 421
Score = 184 bits (467), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 97/260 (37%), Positives = 152/260 (58%), Gaps = 4/260 (1%)
Query: 263 GTTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 321
G +QK+KYL R+ + ++ ++EPG+GSD +KT A K G+ YI+NG KMWI+N
Sbjct: 137 GNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGG 196
Query: 322 IANIFLVMANVDV---SKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVR 378
AN + ++A D + + T FIVE G +G+KE +G + S T + F++V+
Sbjct: 197 KANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVK 256
Query: 379 VPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDF 438
VP+EN++ G G G+K+A G ++ R +AA GLAQ LD Y LER FG + +
Sbjct: 257 VPKENVLIGDGAGFKVAMGAFDKTRPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEH 316
Query: 439 QSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWM 498
Q++ +++ A +VE AR+ AA +++G+ AS+AK FA ++A + + +
Sbjct: 317 QAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQIL 376
Query: 499 GGLGFTKDYPQEKFYRDCKM 518
GG GF +YP EK RD K+
Sbjct: 377 GGNGFNTEYPVEKLMRDAKI 396
Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 130/227 (57%), Gaps = 9/227 (3%)
Query: 4 EQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIAN 62
+QK+KYL R+ + ++ ++EPG+GSD +KT A K G+ YI+NG KMWI+N AN
Sbjct: 140 QQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKAN 199
Query: 63 IFLVMANVDV---SKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPE 119
+ ++A D + + T FIVE G +G+KE +G + S T + F++V+VP+
Sbjct: 200 WYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPK 259
Query: 120 ENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQAC 179
EN++ G G G+K+A G ++ R +AA GLAQ LD Y LER G + + QA
Sbjct: 260 ENVLIGDGAGFKVAMGAFDKTRPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQA- 318
Query: 180 NGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFA 226
+ +++ +VE AR+ AA +++G+ AS+AK FA
Sbjct: 319 ----ISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFA 361
>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|1WS9|B Chain B, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2CX9|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2D29|A Chain A, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2D29|B Chain B, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
Length = 387
Score = 184 bits (467), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 110/261 (42%), Positives = 161/261 (61%), Gaps = 5/261 (1%)
Query: 263 GTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 321
G+ QKE +LP+LA +A G++ L+EPGSGSDA A+KT A K + LNG+K +I+
Sbjct: 104 GSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGS 163
Query: 322 IANIFLVMANVDVS----KGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNV 377
+A +++VMA D + ++GI+ F R G VG+KE KLG+ AS T L +++
Sbjct: 164 VAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDL 223
Query: 378 RVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFD 437
VPEE ++ G+G+ L+ GRIGIAA GL Q LD + Y R FG I +
Sbjct: 224 FVPEEALLGERGKGFYDVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAE 283
Query: 438 FQSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDW 497
F+ V ++++AAT++E ARLL AA L +AG+PF +A+ AK FASE A + I
Sbjct: 284 FEGVSFKLAEAATELEAARLLYLKAAELKDAGRPFTLEAAQAKLFASEAAVKACDEAIQI 343
Query: 498 MGGLGFTKDYPQEKFYRDCKM 518
+GG G+ KDYP E+++RD ++
Sbjct: 344 LGGYGYVKDYPVERYWRDARL 364
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 95/230 (41%), Positives = 137/230 (59%), Gaps = 10/230 (4%)
Query: 5 QKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANI 63
QKE +LP+LA +A G++ L+EPGSGSDA A+KT A K + LNG+K +I+ +A +
Sbjct: 108 QKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGV 167
Query: 64 FLVMANVDVS----KGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPE 119
++VMA D + ++GI+ F R G VG+KE KLG+ AS T L +++ VPE
Sbjct: 168 YVVMARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPE 227
Query: 120 ENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQAC 179
E ++ G+G+ L+ GRIGIAA GL Q LD + Y R G I +F+
Sbjct: 228 EALLGERGKGFYDVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFE-- 285
Query: 180 NGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFASVA 229
V ++++A T++E ARLL AA L +AG+PF +A+ AK FAS A
Sbjct: 286 ---GVSFKLAEAATELEAARLLYLKAAELKDAGRPFTLEAAQAKLFASEA 332
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDD|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
Length = 385
Score = 184 bits (467), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/260 (37%), Positives = 151/260 (58%), Gaps = 4/260 (1%)
Query: 263 GTTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 321
G +Q++KYL R+ + ++ ++EPG+GSD +KT A K G+ YI+NG KMWI+N
Sbjct: 102 GNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGG 161
Query: 322 IANIFLVMANVDV---SKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVR 378
AN + ++A D + + T FIVE G +G+KE +G + S T + F++VR
Sbjct: 162 KANWYFLLARSDPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVR 221
Query: 379 VPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDF 438
VP+EN+++G G G+KIA G ++ R +AA GLAQ LD Y LER FG + +
Sbjct: 222 VPKENVLTGEGAGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEH 281
Query: 439 QSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWM 498
Q + ++ A +VE ARL AA +++G+ AS+AK +A+++A + +
Sbjct: 282 QGISFLLADMAMKVELARLSYQRAAWEIDSGRRNTYYASIAKAYAADIANQLATDAVQVF 341
Query: 499 GGLGFTKDYPQEKFYRDCKM 518
GG GF +YP EK RD K+
Sbjct: 342 GGNGFNTEYPVEKLMRDAKI 361
Score = 146 bits (368), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 130/228 (57%), Gaps = 9/228 (3%)
Query: 4 EQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIAN 62
+Q++KYL R+ + ++ ++EPG+GSD +KT A K G+ YI+NG KMWI+N AN
Sbjct: 105 QQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKAN 164
Query: 63 IFLVMANVDV---SKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPE 119
+ ++A D + + T FIVE G +G+KE +G + S T + F++VRVP+
Sbjct: 165 WYFLLARSDPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPK 224
Query: 120 ENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQAC 179
EN+++G G G+KIA G ++ R +AA GLAQ LD Y LER G + + Q
Sbjct: 225 ENVLTGEGAGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQG- 283
Query: 180 NGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFAS 227
+ ++ +VE ARL AA +++G+ AS+AK +A+
Sbjct: 284 ----ISFLLADMAMKVELARLSYQRAAWEIDSGRRNTYYASIAKAYAA 327
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|B Chain B, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|C Chain C, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|D Chain D, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
Length = 396
Score = 184 bits (466), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/260 (37%), Positives = 151/260 (58%), Gaps = 4/260 (1%)
Query: 263 GTTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 321
G +Q++KYL R+ + ++ ++EPG+GSD +KT A K G+ YI+NG KMWI+N
Sbjct: 112 GNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGG 171
Query: 322 IANIFLVMANVDV---SKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVR 378
AN + ++A D + + T FIVE G +G+KE +G + S T + F++VR
Sbjct: 172 KANWYFLLARSDPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVR 231
Query: 379 VPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDF 438
VP+EN+++G G G+KIA G ++ R +AA GLAQ LD Y LER FG + +
Sbjct: 232 VPKENVLTGEGAGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEH 291
Query: 439 QSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWM 498
Q + ++ A +VE ARL AA +++G+ AS+AK +A+++A + +
Sbjct: 292 QGISFLLADMAMKVELARLSYQRAAWEIDSGRRNTYYASIAKAYAADIANQLATDAVQVF 351
Query: 499 GGLGFTKDYPQEKFYRDCKM 518
GG GF +YP EK RD K+
Sbjct: 352 GGNGFNTEYPVEKLMRDAKI 371
Score = 146 bits (368), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 130/228 (57%), Gaps = 9/228 (3%)
Query: 4 EQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIAN 62
+Q++KYL R+ + ++ ++EPG+GSD +KT A K G+ YI+NG KMWI+N AN
Sbjct: 115 QQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKAN 174
Query: 63 IFLVMANVDV---SKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPE 119
+ ++A D + + T FIVE G +G+KE +G + S T + F++VRVP+
Sbjct: 175 WYFLLARSDPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPK 234
Query: 120 ENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQAC 179
EN+++G G G+KIA G ++ R +AA GLAQ LD Y LER G + + Q
Sbjct: 235 ENVLTGEGAGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQG- 293
Query: 180 NGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFAS 227
+ ++ +VE ARL AA +++G+ AS+AK +A+
Sbjct: 294 ----ISFLLADMAMKVELARLSYQRAAWEIDSGRRNTYYASIAKAYAA 337
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|C Chain C, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPJ|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|E Chain E, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|F Chain F, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|G Chain G, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Length = 397
Score = 184 bits (466), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 111/257 (43%), Positives = 150/257 (58%), Gaps = 4/257 (1%)
Query: 263 GTTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 321
G+ K+KY+P+L+ + G F ++EP +GSD AM +TA G+H++LNGSK WISNA
Sbjct: 105 GSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAA 164
Query: 322 IANIFLVMANVDVSKGYRGITCFIVE-RSMEGFSVGKKENKLGMKASGTCSLHFDNVRVP 380
A++ + A D + G RG++ F++E R+ G E KLG AS T L DNV+VP
Sbjct: 165 QADVLIYYAYTDKAAGSRGLSAFVIEPRNFPGIKTSNLE-KLGSHASPTGELFLDNVKVP 223
Query: 381 EENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQS 440
+ENI+ G+G +I G LN R+ AA GLAQ CLDA I Y ER QFG I DFQ
Sbjct: 224 KENILGKPGDGARIVFGSLNHTRLSAAAGGVGLAQACLDAAIKYCNERRQFGKPIGDFQM 283
Query: 441 VQHQISQAATQVECARLLTYNAARLLEAGQPFIK-QASMAKYFASEMAGHITRQCIDWMG 499
Q I+Q A +VE ARLL Y AA + G+ +MAKY A E + +G
Sbjct: 284 NQDMIAQMAVEVEAARLLAYKAAAAKDEGRLNNGLDVAMAKYAAGEAVSKCANYAMRILG 343
Query: 500 GLGFTKDYPQEKFYRDC 516
G++ +YP +FYRD
Sbjct: 344 AYGYSTEYPVARFYRDA 360
Score = 154 bits (390), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 86/193 (44%), Positives = 115/193 (59%), Gaps = 8/193 (4%)
Query: 6 KEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIF 64
K+KY+P+L+ + G F ++EP +GSD AM +TA G+H++LNGSK WISNA A++
Sbjct: 110 KKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAAQADVL 169
Query: 65 LVMANVDVSKGYRGITCFIVE-RSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENII 123
+ A D + G RG++ F++E R+ G E KLG AS T L DNV+VP+ENI+
Sbjct: 170 IYYAYTDKAAGSRGLSAFVIEPRNFPGIKTSNLE-KLGSHASPTGELFLDNVKVPKENIL 228
Query: 124 SGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACNGGS 183
G+G +I G LN R+ AA GLAQ CLDA I Y ER Q G I DFQ
Sbjct: 229 GKPGDGARIVFGSLNHTRLSAAAGGVGLAQACLDAAIKYCNERRQFGKPIGDFQMN---- 284
Query: 184 VQHQISQAVTQVE 196
Q I+Q +VE
Sbjct: 285 -QDMIAQMAVEVE 296
>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
pdb|2DVL|B Chain B, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
Length = 372
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 107/307 (34%), Positives = 166/307 (54%), Gaps = 38/307 (12%)
Query: 262 LGTTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNA 320
G+ QK +YL LA+ + G+F L+EP +GSDA +++ A + ++LNG K WI++A
Sbjct: 99 FGSEAQKRRYLVPLARGEWIGAFCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSA 158
Query: 321 DIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVP 380
A++++VMA + +GI+ F+VE+ G S G+ E K+G+ A+ T + + V VP
Sbjct: 159 GHAHLYVVMARTE-----KGISAFLVEKGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVP 213
Query: 381 EENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQS 440
EEN++ G G A L+ GR+G+AAQ G+A+G + Y ER QFG ++ + Q+
Sbjct: 214 EENLLGEEGRGLAYALAGLDSGRVGVAAQAVGIARGAFEIAKAYAEEREQFGKKLKEHQA 273
Query: 441 VQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMGG 500
+ +I+ ++ AR L AAR + G+ F +AS AK FAS A +TR+ + +GG
Sbjct: 274 IAFKIADMHVKIAAARALVLEAARKKDRGERFTLEASAAKLFASAAAVEVTREAVQVLGG 333
Query: 501 LGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNI 560
G+ +DY E++Y RD KV IYEGTS I
Sbjct: 334 YGYHRDYRVERYY--------------------------------RDAKVTEIYEGTSEI 361
Query: 561 QLSTIAK 567
Q IA+
Sbjct: 362 QRLVIAR 368
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 122/212 (57%), Gaps = 11/212 (5%)
Query: 5 QKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANI 63
QK +YL LA+ + G+F L+EP +GSDA +++ A + ++LNG K WI++A A++
Sbjct: 104 QKRRYLVPLARGEWIGAFCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHAHL 163
Query: 64 FLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENII 123
++VMA + +GI+ F+VE+ G S G+ E K+G+ A+ T + + V VPEEN++
Sbjct: 164 YVVMARTE-----KGISAFLVEKGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLL 218
Query: 124 SGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACNGGS 183
G G A L+ GR+G+AAQ G+A+G + Y ER Q G ++ + QA
Sbjct: 219 GEEGRGLAYALAGLDSGRVGVAAQAVGIARGAFEIAKAYAEEREQFGKKLKEHQA----- 273
Query: 184 VQHQISQAVTQVECARLLTYNAARLLEAGQPF 215
+ +I+ ++ AR L AAR + G+ F
Sbjct: 274 IAFKIADMHVKIAAARALVLEAARKKDRGERF 305
>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|B Chain B, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|C Chain C, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|D Chain D, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND
Length = 393
Score = 169 bits (427), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 100/259 (38%), Positives = 147/259 (56%), Gaps = 3/259 (1%)
Query: 262 LGTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNA 320
G EQ+ K+ P L + S+ L+EPGSGSDA ++ T+A K G+HYILNGSK +IS A
Sbjct: 114 FGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGA 173
Query: 321 DIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVP 380
++I++VM G +GI+C +VE+ G S GKKE K+G + T ++ F++ VP
Sbjct: 174 GESDIYVVMCRTG-GPGPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVP 232
Query: 381 EENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQS 440
N I G+G+ IA LN GRI IA+ G A + T + R QFG + Q
Sbjct: 233 VANRIGSEGQGFLIAVRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQY 292
Query: 441 VQHQISQAATQVECARLLTYNAARLL-EAGQPFIKQASMAKYFASEMAGHITRQCIDWMG 499
+Q ++ AT++ ARL+ NAA L E + + SMAK FA++ I Q + G
Sbjct: 293 LQFTLADMATRLVAARLMVRNAAVALQEERKDAVALCSMAKLFATDECFAICNQALQMHG 352
Query: 500 GLGFTKDYPQEKFYRDCKM 518
G G+ KDY +++ RD ++
Sbjct: 353 GYGYLKDYAVQQYVRDSRV 371
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 126/226 (55%), Gaps = 8/226 (3%)
Query: 4 EQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIAN 62
EQ+ K+ P L + S+ L+EPGSGSDA ++ T+A K G+HYILNGSK +IS A ++
Sbjct: 118 EQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESD 177
Query: 63 IFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENI 122
I++VM G +GI+C +VE+ G S GKKE K+G + T ++ F++ VP N
Sbjct: 178 IYVVMCRTG-GPGPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANR 236
Query: 123 ISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACNGG 182
I G+G+ IA LN GRI IA+ G A + T + R Q G + Q
Sbjct: 237 IGSEGQGFLIAVRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQ----- 291
Query: 183 SVQHQISQAVTQVECARLLTYNAARLL-EAGQPFIKQASMAKYFAS 227
+Q ++ T++ ARL+ NAA L E + + SMAK FA+
Sbjct: 292 YLQFTLADMATRLVAARLMVRNAAVALQEERKDAVALCSMAKLFAT 337
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
pdb|2PG0|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
Length = 385
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 87/268 (32%), Positives = 148/268 (55%), Gaps = 3/268 (1%)
Query: 256 TLFESGLGTTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSK 314
T + + GT EQK+K+LP+ + + A++EPG+GSD + TTA KDG++YI+NG K
Sbjct: 99 TPYIASYGTEEQKQKWLPKCVTGELITAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQK 158
Query: 315 MWISNADIANIFLVMANVD--VSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSL 372
+I+N A++ +V D +RGI+ +VER GF+ G+K K+G+ A T L
Sbjct: 159 TFITNGIHADLIVVACKTDPQAKPPHRGISLLVVERDTPGFTRGRKLEKVGLHAQDTAEL 218
Query: 373 HFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFG 432
F + +VP N++ G+G+ L Q R+ +A A+ T Y +R+ FG
Sbjct: 219 FFQDAKVPAYNLLGEEGKGFYYLMEKLQQERLVVAIAAQTAAEVMFSLTKQYVKQRTAFG 278
Query: 433 HRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITR 492
R+ +FQ+VQ ++++ AT++ R AG+ + + SMAK++ +EMA +
Sbjct: 279 KRVSEFQTVQFRLAEMATEIALGRTFVDRVIEEHMAGKQIVTEVSMAKWWITEMAKRVAA 338
Query: 493 QCIDWMGGLGFTKDYPQEKFYRDCKMAG 520
+ + GG G+ ++Y + YRD ++
Sbjct: 339 EAMQLHGGYGYMEEYEIARRYRDIPVSA 366
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 130/243 (53%), Gaps = 10/243 (4%)
Query: 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 60
T EQK+K+LP+ + + A++EPG+GSD + TTA KDG++YI+NG K +I+N
Sbjct: 107 TEEQKQKWLPKCVTGELITAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFITNGIH 166
Query: 61 ANIFLVMANVD--VSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVP 118
A++ +V D +RGI+ +VER GF+ G+K K+G+ A T L F + +VP
Sbjct: 167 ADLIVVACKTDPQAKPPHRGISLLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQDAKVP 226
Query: 119 EENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQA 178
N++ G+G+ L Q R+ +A A+ T Y +R+ G R+ +FQ
Sbjct: 227 AYNLLGEEGKGFYYLMEKLQQERLVVAIAAQTAAEVMFSLTKQYVKQRTAFGKRVSEFQ- 285
Query: 179 CNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFASVAKLAKETIAP 238
+VQ ++++ T++ R AG+ + + SMAK++ + ++AK A
Sbjct: 286 ----TVQFRLAEMATEIALGRTFVDRVIEEHMAGKQIVTEVSMAKWW--ITEMAKRVAAE 339
Query: 239 YVQ 241
+Q
Sbjct: 340 AMQ 342
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
Length = 597
Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/304 (31%), Positives = 154/304 (50%), Gaps = 24/304 (7%)
Query: 262 LGTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTA--TKDGNHYILNGSKMWIS 318
G EQK+KYLP LA + ++AL+EPGSGSDA KTTA +G HY+LNG K WI+
Sbjct: 129 FGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWIT 188
Query: 319 NADIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVR 378
N+ A++F+V A +D + FIVE+ G S +E K G+K S T +L ++
Sbjct: 189 NSAFADVFIVYAKIDGEH----FSAFIVEKDYAGVSTSPEEKKXGIKCSSTRTLILEDAL 244
Query: 379 VPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDF 438
VP+EN++ +G+G+ IA LN GR + G A+ ++ + Y +R QF I F
Sbjct: 245 VPKENLLGEIGKGHIIAFNILNIGRYKLGVGTVGSAKRAVEISAQYANQRQQFKQPIARF 304
Query: 439 QSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASM--AKYFASEMAGHITRQCID 496
+Q +++ A + A Y L E+ + + + K A+ +A + ++
Sbjct: 305 PLIQEKLANXAAKTYAAESSVYRTVGLFESRXSTLSEEEVKDGKAVAASIAEYAIECSLN 364
Query: 497 WMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEG 556
+ G ++ + + + GG GF +Y E+ YRD ++ I+EG
Sbjct: 365 KVFG---------------SEVLDYTVDEGVQIHGGYGFXAEYEIERXYRDSRINRIFEG 409
Query: 557 TSNI 560
T+ I
Sbjct: 410 TNEI 413
Score = 132 bits (331), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 84/253 (33%), Positives = 130/253 (51%), Gaps = 12/253 (4%)
Query: 4 EQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTA--TKDGNHYILNGSKMWISNADI 60
EQK+KYLP LA + ++AL+EPGSGSDA KTTA +G HY+LNG K WI+N+
Sbjct: 133 EQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWITNSAF 192
Query: 61 ANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEE 120
A++F+V A +D + FIVE+ G S +E K G+K S T +L ++ VP+E
Sbjct: 193 ADVFIVYAKIDGEH----FSAFIVEKDYAGVSTSPEEKKXGIKCSSTRTLILEDALVPKE 248
Query: 121 NIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACN 180
N++ +G+G+ IA LN GR + G A+ ++ + Y +R Q I F
Sbjct: 249 NLLGEIGKGHIIAFNILNIGRYKLGVGTVGSAKRAVEISAQYANQRQQFKQPIARFPL-- 306
Query: 181 GGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFASVAKLAKETIAPYV 240
+Q +++ + A Y L E+ + + + A A +A+ I +
Sbjct: 307 ---IQEKLANXAAKTYAAESSVYRTVGLFESRXSTLSEEEVKDGKAVAASIAEYAIECSL 363
Query: 241 QKMESEEKIDETV 253
K+ E +D TV
Sbjct: 364 NKVFGSEVLDYTV 376
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|B Chain B, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|C Chain C, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|D Chain D, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
Length = 399
Score = 145 bits (367), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 95/308 (30%), Positives = 146/308 (47%), Gaps = 39/308 (12%)
Query: 263 GTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 321
G+ EQK ++LPRLA DA G F L+EP GS+ M+T A +DG+ +ILNG+KMWI+N +
Sbjct: 122 GSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMWITNGN 181
Query: 322 IANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPE 381
+A++ V A D GI F+V GF+ + KL ++AS T L DNVR+P
Sbjct: 182 LADVATVWAQTD-----DGIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPA 236
Query: 382 ENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSV 441
+ + EG LN+ R GI G A+ L+ TI YT R F + ++Q
Sbjct: 237 SAQLP-LAEGLSAPLSCLNEARFGIVFGALGAARDSLETTIAYTQSREVFDKPLSNYQLT 295
Query: 442 QHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMGGL 501
Q +++ ++ LL + R+ +A +Q S+ K
Sbjct: 296 QEKLANMTVELGKGMLLAIHLGRIKDAEGVRPEQISLGKL-------------------- 335
Query: 502 GFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNIQ 561
+ + A I R+C +GG G T +Y ++ + + YEGTS +
Sbjct: 336 ------------NNVREAIAIARECRTLLGGSGITLEYSPLRHANNLESVLTYEGTSEMH 383
Query: 562 LSTIAKYI 569
L +I K +
Sbjct: 384 LLSIGKAL 391
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 114/221 (51%), Gaps = 12/221 (5%)
Query: 4 EQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIAN 62
EQK ++LPRLA DA G F L+EP GS+ M+T A +DG+ +ILNG+KMWI+N ++A+
Sbjct: 125 EQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMWITNGNLAD 184
Query: 63 IFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENI 122
+ V A D GI F+V GF+ + KL ++AS T L DNVR+P
Sbjct: 185 VATVWAQTD-----DGIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPASAQ 239
Query: 123 ISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACNGG 182
+ + EG LN+ R GI G A+ L+ TI YT R +FD N
Sbjct: 240 LP-LAEGLSAPLSCLNEARFGIVFGALGAARDSLETTIAYTQSR-----EVFDKPLSNYQ 293
Query: 183 SVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAK 223
Q +++ ++ LL + R+ +A +Q S+ K
Sbjct: 294 LTQEKLANMTVELGKGMLLAIHLGRIKDAEGVRPEQISLGK 334
>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3OIB|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3P4T|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
pdb|3P4T|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
Length = 403
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 138/250 (55%), Gaps = 4/250 (1%)
Query: 273 PRLAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANV 332
P L G+ A++EPG GSD ++T A DG+HY++NG+K +I++ A+ ++V A
Sbjct: 135 PTLRGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVINGAKTYITSGVRAD-YVVTAAR 193
Query: 333 DVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGY 392
G G++ +V++ GF V +K +K+G ++S T L + +VRVP N++ G+
Sbjct: 194 TGGPGAGGVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLVGSENTGF 253
Query: 393 -KIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQ 451
+IAA F+ + R+G+A Q AQ CLD T+ + R FG + Q+VQ+ ++ A +
Sbjct: 254 AQIAAAFVAE-RVGLATQAYAGAQRCLDLTVEWCRNRDTFGRPLISRQAVQNTLAGMARR 312
Query: 452 VECARLLTYNAARLLEAGQP-FIKQASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQE 510
++ AR+ T + AG+ I + AK A E + Q + GG+G+ + E
Sbjct: 313 IDVARVYTRHVVERQLAGETNLIAEVCFAKNTAVEAGEWVANQAVQLFGGMGYMAESEVE 372
Query: 511 KFYRDCKMAG 520
+ YRD ++ G
Sbjct: 373 RQYRDMRILG 382
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 117/215 (54%), Gaps = 9/215 (4%)
Query: 11 PRLAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANV 70
P L G+ A++EPG GSD ++T A DG+HY++NG+K +I++ A+ ++V A
Sbjct: 135 PTLRGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVINGAKTYITSGVRAD-YVVTAAR 193
Query: 71 DVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGY 130
G G++ +V++ GF V +K +K+G ++S T L + +VRVP N++ G+
Sbjct: 194 TGGPGAGGVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLVGSENTGF 253
Query: 131 -KIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACNGGSVQHQIS 189
+IAA F+ + R+G+A Q AQ CLD T+ + R G + QA VQ+ ++
Sbjct: 254 AQIAAAFVAE-RVGLATQAYAGAQRCLDLTVEWCRNRDTFGRPLISRQA-----VQNTLA 307
Query: 190 QAVTQVECARLLTYNAARLLEAGQP-FIKQASMAK 223
+++ AR+ T + AG+ I + AK
Sbjct: 308 GMARRIDVARVYTRHVVERQLAGETNLIAEVCFAK 342
>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|B Chain B, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|C Chain C, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|D Chain D, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 403
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 137/253 (54%), Gaps = 2/253 (0%)
Query: 269 EKYL-PRLAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFL 327
E+Y+ P LA GS ++EPG+GSD ++T A ++G+ Y++NG+K +I++ A+ F+
Sbjct: 133 ERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFITSGVRAD-FV 191
Query: 328 VMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISG 387
A GY G++ +++++ GF V ++ +K+G + S T L F +VRVP +N++
Sbjct: 192 TTAVRTGGPGYGGVSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVPADNLVGA 251
Query: 388 VGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQ 447
G+ R+GIA Q A LD + ER FG + Q ++H++++
Sbjct: 252 ENSGFLQIMQQFQAERLGIAVQAYATAGRALDLAKSWARERETFGRPLTGRQIIRHKLAE 311
Query: 448 AATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMGGLGFTKDY 507
A QV+ A T + AG+ + + SMAK A ++ + + GG+G+ ++
Sbjct: 312 MARQVDVACTYTRAVMQRWLAGEDVVAEVSMAKNTAVYACDYVVNEAVQIFGGMGYMRES 371
Query: 508 PQEKFYRDCKMAG 520
E+ YRDC++ G
Sbjct: 372 EIERHYRDCRILG 384
Score = 108 bits (270), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 116/224 (51%), Gaps = 7/224 (3%)
Query: 7 EKYL-PRLAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFL 65
E+Y+ P LA GS ++EPG+GSD ++T A ++G+ Y++NG+K +I++ A+ F+
Sbjct: 133 ERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFITSGVRAD-FV 191
Query: 66 VMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISG 125
A GY G++ +++++ GF V ++ +K+G + S T L F +VRVP +N++
Sbjct: 192 TTAVRTGGPGYGGVSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVPADNLVGA 251
Query: 126 VGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACNGGSVQ 185
G+ R+GIA Q A LD + ER G + Q ++
Sbjct: 252 ENSGFLQIMQQFQAERLGIAVQAYATAGRALDLAKSWARERETFGRPLTGRQI-----IR 306
Query: 186 HQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFASVA 229
H++++ QV+ A T + AG+ + + SMAK A A
Sbjct: 307 HKLAEMARQVDVACTYTRAVMQRWLAGEDVVAEVSMAKNTAVYA 350
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GNC|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
Length = 399
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 133/256 (51%), Gaps = 5/256 (1%)
Query: 253 VLKTLFESGLGTTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILN 311
V+ +FE G+ QKEKYLP+LA + G F L+EP GSD +M T A K Y L+
Sbjct: 111 VMVPIFE--FGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLS 168
Query: 312 GSKMWISNADIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCS 371
GSKMWI+N+ IA++F+V A +D G I FI+E+ +G S K+G++AS T
Sbjct: 169 GSKMWITNSPIADVFVVWAKLD-EDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGE 227
Query: 372 LHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQF 431
+ D VPEENI+ V +G + LN R GIA G A+ C Y L+R QF
Sbjct: 228 IVLDEAFVPEENILPHV-KGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQF 286
Query: 432 GHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHIT 491
G + Q +Q +++ T++ R+ + G ++ S+ K + A I
Sbjct: 287 GRPLAANQLIQKKLADMQTEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIA 346
Query: 492 RQCIDWMGGLGFTKDY 507
R D +GG G + ++
Sbjct: 347 RLARDMLGGNGISDEF 362
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 122/238 (51%), Gaps = 13/238 (5%)
Query: 5 QKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANI 63
QKEKYLP+LA + G F L+EP GSD +M T A K Y L+GSKMWI+N+ IA++
Sbjct: 123 QKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADV 182
Query: 64 FLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENII 123
F+V A +D G I FI+E+ +G S K+G++AS T + D VPEENI+
Sbjct: 183 FVVWAKLD-EDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENIL 241
Query: 124 SGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACNGGS 183
V +G + LN R GIA G A+ C Y L+R Q G + Q
Sbjct: 242 PHV-KGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQL----- 295
Query: 184 VQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFA-----SVAKLAKETI 236
+Q +++ T++ R+ + G ++ S+ K + +A+LA++ +
Sbjct: 296 IQKKLADMQTEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDML 353
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|B Chain B, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|C Chain C, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|D Chain D, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
Length = 395
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 133/256 (51%), Gaps = 5/256 (1%)
Query: 253 VLKTLFESGLGTTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILN 311
V+ +FE G+ QKEKYLP+LA + G F L+EP GSD +M T A K Y L+
Sbjct: 107 VMVPIFE--FGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLS 164
Query: 312 GSKMWISNADIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCS 371
GSKMWI+N+ IA++F+V A +D G I FI+E+ +G S K+G++AS T
Sbjct: 165 GSKMWITNSPIADVFVVWAKLD-EDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGE 223
Query: 372 LHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQF 431
+ D VPEENI+ V +G + LN R GIA G A+ C Y L+R QF
Sbjct: 224 IVLDEAFVPEENILPHV-KGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQF 282
Query: 432 GHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHIT 491
G + Q +Q +++ T++ R+ + G ++ S+ K + A I
Sbjct: 283 GRPLAANQLIQKKLADMQTEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIA 342
Query: 492 RQCIDWMGGLGFTKDY 507
R D +GG G + ++
Sbjct: 343 RLARDMLGGNGISDEF 358
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 122/238 (51%), Gaps = 13/238 (5%)
Query: 5 QKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANI 63
QKEKYLP+LA + G F L+EP GSD +M T A K Y L+GSKMWI+N+ IA++
Sbjct: 119 QKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADV 178
Query: 64 FLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENII 123
F+V A +D G I FI+E+ +G S K+G++AS T + D VPEENI+
Sbjct: 179 FVVWAKLD-EDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENIL 237
Query: 124 SGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACNGGS 183
V +G + LN R GIA G A+ C Y L+R Q G + Q
Sbjct: 238 PHV-KGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQL----- 291
Query: 184 VQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFA-----SVAKLAKETI 236
+Q +++ T++ R+ + G ++ S+ K + +A+LA++ +
Sbjct: 292 IQKKLADMQTEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDML 349
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|B Chain B, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|C Chain C, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|D Chain D, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EON|A Chain A, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|B Chain B, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|C Chain C, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|D Chain D, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3II9|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
Length = 396
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 133/256 (51%), Gaps = 5/256 (1%)
Query: 253 VLKTLFESGLGTTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILN 311
V+ +FE G+ QKEKYLP+LA + G F L+EP GSD +M T A K Y L+
Sbjct: 108 VMVPIFE--FGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLS 165
Query: 312 GSKMWISNADIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCS 371
GSKMWI+N+ IA++F+V A +D G I FI+E+ +G S K+G++AS T
Sbjct: 166 GSKMWITNSPIADVFVVWAKLD-EDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGE 224
Query: 372 LHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQF 431
+ D VPEENI+ V +G + LN R GIA G A+ C Y L+R QF
Sbjct: 225 IVLDEAFVPEENILPHV-KGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQF 283
Query: 432 GHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHIT 491
G + Q +Q +++ T++ R+ + G ++ S+ K + A I
Sbjct: 284 GRPLAANQLIQKKLADMQTEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIA 343
Query: 492 RQCIDWMGGLGFTKDY 507
R D +GG G + ++
Sbjct: 344 RLARDMLGGNGISDEF 359
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 122/238 (51%), Gaps = 13/238 (5%)
Query: 5 QKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANI 63
QKEKYLP+LA + G F L+EP GSD +M T A K Y L+GSKMWI+N+ IA++
Sbjct: 120 QKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADV 179
Query: 64 FLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENII 123
F+V A +D G I FI+E+ +G S K+G++AS T + D VPEENI+
Sbjct: 180 FVVWAKLD-EDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENIL 238
Query: 124 SGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACNGGS 183
V +G + LN R GIA G A+ C Y L+R Q G + Q
Sbjct: 239 PHV-KGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQL----- 292
Query: 184 VQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFA-----SVAKLAKETI 236
+Q +++ T++ R+ + G ++ S+ K + +A+LA++ +
Sbjct: 293 IQKKLADMQTEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDML 350
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis
Length = 403
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 124/250 (49%), Gaps = 11/250 (4%)
Query: 262 LGTTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNA 320
G+ EQK+++LP +A G F L+EP GSD M+T AT+ G+ +IL G+KMWI+N
Sbjct: 126 FGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILTGTKMWITNG 185
Query: 321 DIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVP 380
+A++ +V A D GI F+V GF+ ++K+ ++AS T L D VR+P
Sbjct: 186 SVADVAVVWARTD-----EGIRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVRLP 240
Query: 381 EENIISGVGEGYKIAAGF--LNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDF 438
+ + G + A LN+ R GI G A+ CL+ + Y R QF I F
Sbjct: 241 DSARLPGA---TSLGAPLRCLNEARFGIVFGALGAARDCLETALAYACSREQFDRPIGGF 297
Query: 439 QSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWM 498
Q Q +++ + LL + R +AG+ +Q S+ K A I R +
Sbjct: 298 QLTQQKLADMTLEYGKGFLLALHLGRQKDAGELAPEQVSLGKLNNVREAIEIARTARTVL 357
Query: 499 GGLGFTKDYP 508
G G T +YP
Sbjct: 358 GASGITGEYP 367
Score = 115 bits (287), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 112/225 (49%), Gaps = 16/225 (7%)
Query: 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 60
+ EQK+++LP +A G F L+EP GSD M+T AT+ G+ +IL G+KMWI+N +
Sbjct: 128 SDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILTGTKMWITNGSV 187
Query: 61 ANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEE 120
A++ +V A D GI F+V GF+ ++K+ ++AS T L D VR+P+
Sbjct: 188 ADVAVVWARTD-----EGIRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVRLPDS 242
Query: 121 NIISGVGEGYKIAAGF--LNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQA 178
+ G + A LN+ R GI G A+ CL+ + Y R Q I FQ
Sbjct: 243 ARLPGA---TSLGAPLRCLNEARFGIVFGALGAARDCLETALAYACSREQFDRPIGGFQL 299
Query: 179 CNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAK 223
Q +++ + LL + R +AG+ +Q S+ K
Sbjct: 300 -----TQQKLADMTLEYGKGFLLALHLGRQKDAGELAPEQVSLGK 339
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
Length = 392
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 151/288 (52%), Gaps = 11/288 (3%)
Query: 226 ASVAKLAKETIAPYVQKMESEEKIDETVLKTLFESGL---GTTEQKEKYLPRLAQTDA-G 281
A V+ +A +A +++++S + +V +L + G+ EQ++KYLP+LA+ + G
Sbjct: 70 AGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLG 129
Query: 282 SFALSEPGSGSDAFAMKTTATKDGNH--YILNGSKMWISNADIANIFLVMANVDVSKGYR 339
F L+EP SGSD +M+T A + ++ Y LNG+K WI+N+ +A++F+V A + R
Sbjct: 130 CFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE-DGCIR 188
Query: 340 GITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFL 399
G F++E+ M G S + + K ++AS T + D V VPEEN++ G G L
Sbjct: 189 G---FLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASS-LGGPFGCL 244
Query: 400 NQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLT 459
N R GIA + G ++ CL Y L+R QFG + Q +Q +++ T++
Sbjct: 245 NNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHAC 304
Query: 460 YNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMGGLGFTKDY 507
RL + + + S+ K A I RQ D +GG G + +Y
Sbjct: 305 LQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEY 352
Score = 111 bits (278), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 111/197 (56%), Gaps = 13/197 (6%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNH--YILNGSKMWISNA 58
+ EQ++KYLP+LA+ + G F L+EP SGSD +M+T A + ++ Y LNG+K WI+N+
Sbjct: 111 SEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNS 170
Query: 59 DIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVP 118
+A++F+V A + RG F++E+ M G S + + K ++AS T + D V VP
Sbjct: 171 PMADLFVVWARCE-DGCIRG---FLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVP 226
Query: 119 EENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQA 178
EEN++ G G LN R GIA + G ++ CL Y L+R Q G + Q
Sbjct: 227 EENVLPG-ASSLGGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQL 285
Query: 179 CNGGSVQHQISQAVTQV 195
+Q +++ +T++
Sbjct: 286 -----IQKKLADMLTEI 297
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 151/288 (52%), Gaps = 11/288 (3%)
Query: 226 ASVAKLAKETIAPYVQKMESEEKIDETVLKTLFESGL---GTTEQKEKYLPRLAQTDA-G 281
A V+ +A +A +++++S + +V +L + G+ EQ++KYLP+LA+ + G
Sbjct: 72 AGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLG 131
Query: 282 SFALSEPGSGSDAFAMKTTATKDGNH--YILNGSKMWISNADIANIFLVMANVDVSKGYR 339
F L+EP SGSD +M+T A + ++ Y LNG+K WI+N+ +A++F+V A + R
Sbjct: 132 CFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE-DGCIR 190
Query: 340 GITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFL 399
G F++E+ M G S + + K ++AS T + D V VPEEN++ G G L
Sbjct: 191 G---FLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASS-LGGPFGCL 246
Query: 400 NQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLT 459
N R GIA + G ++ CL Y L+R QFG + Q +Q +++ T++
Sbjct: 247 NNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHAC 306
Query: 460 YNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMGGLGFTKDY 507
RL + + + S+ K A I RQ D +GG G + +Y
Sbjct: 307 LQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEY 354
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 111/197 (56%), Gaps = 13/197 (6%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNH--YILNGSKMWISNA 58
+ EQ++KYLP+LA+ + G F L+EP SGSD +M+T A + ++ Y LNG+K WI+N+
Sbjct: 113 SEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNS 172
Query: 59 DIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVP 118
+A++F+V A + RG F++E+ M G S + + K ++AS T + D V VP
Sbjct: 173 PMADLFVVWARCE-DGCIRG---FLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVP 228
Query: 119 EENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQA 178
EEN++ G G LN R GIA + G ++ CL Y L+R Q G + Q
Sbjct: 229 EENVLPG-ASSLGGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQL 287
Query: 179 CNGGSVQHQISQAVTQV 195
+Q +++ +T++
Sbjct: 288 -----IQKKLADMLTEI 299
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
pdb|2R0N|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 151/288 (52%), Gaps = 11/288 (3%)
Query: 226 ASVAKLAKETIAPYVQKMESEEKIDETVLKTLFESGL---GTTEQKEKYLPRLAQTDA-G 281
A V+ +A +A +++++S + +V +L + G+ EQ++KYLP+LA+ + G
Sbjct: 72 AGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLG 131
Query: 282 SFALSEPGSGSDAFAMKTTATKDGNH--YILNGSKMWISNADIANIFLVMANVDVSKGYR 339
F L+EP SGSD +M+T A + ++ Y LNG+K WI+N+ +A++F+V A + R
Sbjct: 132 CFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE-DGCIR 190
Query: 340 GITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFL 399
G F++E+ M G S + + K ++AS T + D V VPEEN++ G G L
Sbjct: 191 G---FLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASS-LGGPFGCL 246
Query: 400 NQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLT 459
N R GIA + G ++ CL Y L+R QFG + Q +Q +++ T++
Sbjct: 247 NNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHAC 306
Query: 460 YNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMGGLGFTKDY 507
RL + + + S+ K A I RQ D +GG G + +Y
Sbjct: 307 LQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEY 354
Score = 111 bits (278), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 111/197 (56%), Gaps = 13/197 (6%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNH--YILNGSKMWISNA 58
+ EQ++KYLP+LA+ + G F L+EP SGSD +M+T A + ++ Y LNG+K WI+N+
Sbjct: 113 SEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNS 172
Query: 59 DIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVP 118
+A++F+V A + RG F++E+ M G S + + K ++AS T + D V VP
Sbjct: 173 PMADLFVVWARCE-DGCIRG---FLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVP 228
Query: 119 EENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQA 178
EEN++ G G LN R GIA + G ++ CL Y L+R Q G + Q
Sbjct: 229 EENVLPG-ASSLGGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQL 287
Query: 179 CNGGSVQHQISQAVTQV 195
+Q +++ +T++
Sbjct: 288 -----IQKKLADMLTEI 299
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
Length = 436
Score = 128 bits (321), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 126/254 (49%), Gaps = 5/254 (1%)
Query: 263 GTTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 321
G+ QKEKYLP LAQ + +AL+EP +GSDA + TTATK + +NG K WI N+
Sbjct: 151 GSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNST 210
Query: 322 IANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPE 381
A++ ++ A + G FIV++ G K NK+G++ + NV VP+
Sbjct: 211 FADLLIIFARNTTTNQING---FIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNVFVPD 267
Query: 382 ENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSV 441
E+ + GV ++ + L R+ +A Q G++ G D Y ER QFG + FQ
Sbjct: 268 EDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAFQLN 326
Query: 442 QHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMGGL 501
Q ++ Q V+ L+ + +L E GQ QAS+ K + S A + +GG
Sbjct: 327 QQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQASLGKAWISSKARETASLGRELLGGN 386
Query: 502 GFTKDYPQEKFYRD 515
G D+ K + D
Sbjct: 387 GILADFLVAKAFCD 400
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 118/232 (50%), Gaps = 12/232 (5%)
Query: 5 QKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANI 63
QKEKYLP LAQ + +AL+EP +GSDA + TTATK + +NG K WI N+ A++
Sbjct: 155 QKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADL 214
Query: 64 FLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENII 123
++ A + G FIV++ G K NK+G++ + NV VP+E+ +
Sbjct: 215 LIIFARNTTTNQING---FIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRL 271
Query: 124 SGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACNGGS 183
GV ++ + L R+ +A Q G++ G D Y ER Q G + FQ
Sbjct: 272 PGV-NSFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAFQLN---- 326
Query: 184 VQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFASVAKLAKET 235
Q ++ Q + V+ L+ + +L E GQ QAS+ K A ++ A+ET
Sbjct: 327 -QQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQASLGK--AWISSKARET 375
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|E Chain E, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|F Chain F, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
Length = 449
Score = 128 bits (321), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 126/254 (49%), Gaps = 5/254 (1%)
Query: 263 GTTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 321
G+ QKEKYLP LAQ + +AL+EP +GSDA + TTATK + +NG K WI N+
Sbjct: 151 GSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNST 210
Query: 322 IANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPE 381
A++ ++ A + G FIV++ G K NK+G++ + NV VP+
Sbjct: 211 FADLLIIFARNTTTNQING---FIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNVFVPD 267
Query: 382 ENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSV 441
E+ + GV ++ + L R+ +A Q G++ G D Y ER QFG + FQ
Sbjct: 268 EDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAFQLN 326
Query: 442 QHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMGGL 501
Q ++ Q V+ L+ + +L E GQ QAS+ K + S A + +GG
Sbjct: 327 QQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQASLGKAWISSKARETASLGRELLGGN 386
Query: 502 GFTKDYPQEKFYRD 515
G D+ K + D
Sbjct: 387 GILADFLVAKAFCD 400
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 118/232 (50%), Gaps = 12/232 (5%)
Query: 5 QKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANI 63
QKEKYLP LAQ + +AL+EP +GSDA + TTATK + +NG K WI N+ A++
Sbjct: 155 QKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADL 214
Query: 64 FLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENII 123
++ A + G FIV++ G K NK+G++ + NV VP+E+ +
Sbjct: 215 LIIFARNTTTNQING---FIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRL 271
Query: 124 SGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACNGGS 183
GV ++ + L R+ +A Q G++ G D Y ER Q G + FQ
Sbjct: 272 PGV-NSFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAFQLN---- 326
Query: 184 VQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFASVAKLAKET 235
Q ++ Q + V+ L+ + +L E GQ QAS+ K A ++ A+ET
Sbjct: 327 -QQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQASLGK--AWISSKARET 375
>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|C Chain C, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|D Chain D, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|E Chain E, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|F Chain F, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|G Chain G, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|H Chain H, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|I Chain I, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
Length = 385
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 127/247 (51%), Gaps = 7/247 (2%)
Query: 263 GTTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFA-MKTTATKDGNHYILNGSKMWISNA 320
G+ EQK ++LP+LA+ + G F L+EP GSD + MKT A ++G+ ++LNG+KMWI+N
Sbjct: 108 GSEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWITNG 167
Query: 321 DIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVP 380
++A++ ++ A + + + F+V GF + + K+ ++AS T L + VRVP
Sbjct: 168 NLAHLAVIWAKDEGGE----VLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVP 223
Query: 381 EENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQS 440
E ++ G K L Q R GIA G + + + + RS FG + Q
Sbjct: 224 E-SLRLPKALGLKAPLSCLTQARFGIAWGAMGALEAVYEEAVAFAKSRSTFGEPLAKKQL 282
Query: 441 VQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMGG 500
VQ ++++ LL + ARL + G+ Q S+AK A R D +GG
Sbjct: 283 VQAKLAEMLAWHTEGLLLAWRLARLKDEGKLTPAQVSLAKRQNVWKALQAARMARDILGG 342
Query: 501 LGFTKDY 507
G T +Y
Sbjct: 343 SGITLEY 349
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 94/174 (54%), Gaps = 7/174 (4%)
Query: 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFA-MKTTATKDGNHYILNGSKMWISNAD 59
+ EQK ++LP+LA+ + G F L+EP GSD + MKT A ++G+ ++LNG+KMWI+N +
Sbjct: 109 SEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWITNGN 168
Query: 60 IANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPE 119
+A++ ++ A + + + F+V GF + + K+ ++AS T L + VRVP
Sbjct: 169 LAHLAVIWAKDEGGE----VLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVP- 223
Query: 120 ENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRI 173
E++ G K L Q R GIA G + + + + RS G +
Sbjct: 224 ESLRLPKALGLKAPLSCLTQARFGIAWGAMGALEAVYEEAVAFAKSRSTFGEPL 277
>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From
Mycobacterium Abscessus
Length = 415
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 143/308 (46%), Gaps = 16/308 (5%)
Query: 220 SMAKYFASVAKLAKETIAPYVQKMESEEKIDETVLKTLFESGLGTTEQKEKYLPRLAQTD 279
S ++Y ++ + AP V + + + VL G+ EQKE +L L + D
Sbjct: 87 SNSEYAPLAEQMGRSLFAPTVFNCNAPDSGNMEVLHRY-----GSQEQKEVWLEPLLEGD 141
Query: 280 AGS-FALSEPG-SGSDAFAMKTTATKDGNHYILNGSKMWISNADIAN----IFLVMANVD 333
S F ++EP + SDA M TA +G+ ++NG K W + + IF+ + + +
Sbjct: 142 IRSAFCMTEPDVASSDATNMAATAVVEGDEVVINGRKWWSTGVGHPDCKVIIFMGLTDPN 201
Query: 334 VSKGYRGITCFIVERSMEGFSVGKKENKLGM--KASGTCSLHFDNVRVPEENIISGVGEG 391
+ Y + +V G +V + +G + G + FDNVR+P + I+G G+G
Sbjct: 202 AHR-YARHSMVLVPMDTPGITVERMLPTMGFYDEPGGHGVVSFDNVRLPADAFIAGPGKG 260
Query: 392 YKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQ 451
++IA G L GR+ A ++ GLA+ L+ L+R+ FG + + + +I+ A
Sbjct: 261 FEIAQGRLGPGRVHHAMRLIGLAEVALEHACRRGLDRTAFGKPLVNLGGNRERIADARIA 320
Query: 452 VECARLLTYNAARLLEAGQPF--IKQASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQ 509
+ RLL +AA LL+ + S K A MA + I GG G + D+P
Sbjct: 321 INQTRLLVLHAAWLLDTVGIMGALSAVSEIKVAAPNMAQQVIDMAIQIHGGGGLSNDFPL 380
Query: 510 EKFYRDCK 517
+ + +
Sbjct: 381 AAAWVNAR 388
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 109/217 (50%), Gaps = 14/217 (6%)
Query: 2 TTEQKEKYLPRLAQTDAGS-FALSEPG-SGSDAFAMKTTATKDGNHYILNGSKMWISNAD 59
+ EQKE +L L + D S F ++EP + SDA M TA +G+ ++NG K W +
Sbjct: 126 SQEQKEVWLEPLLEGDIRSAFCMTEPDVASSDATNMAATAVVEGDEVVINGRKWWSTGVG 185
Query: 60 IAN----IFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGM--KASGTCSLHFD 113
+ IF+ + + + + Y + +V G +V + +G + G + FD
Sbjct: 186 HPDCKVIIFMGLTDPNAHR-YARHSMVLVPMDTPGITVERMLPTMGFYDEPGGHGVVSFD 244
Query: 114 NVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRI 173
NVR+P + I+G G+G++IA G L GR+ A ++ GLA+ L+ L+R+ G +
Sbjct: 245 NVRLPADAFIAGPGKGFEIAQGRLGPGRVHHAMRLIGLAEVALEHACRRGLDRTAFGKPL 304
Query: 174 FDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLE 210
N G + +I+ A + RLL +AA LL+
Sbjct: 305 -----VNLGGNRERIADARIAINQTRLLVLHAAWLLD 336
>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
pdb|2WBI|B Chain B, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
Length = 428
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 128/265 (48%), Gaps = 17/265 (6%)
Query: 263 GTTEQKEKYLPRLAQTDAGS-FALSEPG-SGSDAFAMKTTATKDGNHYILNGSKMWISNA 320
G+ EQK+++L L Q + S F ++EP + SDA ++ + +D + Y++NG K W S A
Sbjct: 131 GSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDEDSYVINGKKWWSSGA 190
Query: 321 -----DIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKAS---GTCSL 372
IA + N +S+ ++ + +V + G + + + G + G +
Sbjct: 191 GNPKCKIAIVLGRTQNTSLSR-HKQHSMILVPMNTPGVKIIRPLSVFGYTDNFHGGHFEI 249
Query: 373 HFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFG 432
HF+ VRVP N+I G G G++I+ G L GRI + GLA+ L +R F
Sbjct: 250 HFNQVRVPATNLILGEGRGFEISQGRLGPGRIHHCMRTVGLAERALQIMCERATQRIAFK 309
Query: 433 HRIFDFQSVQHQISQAATQVECARLLTYNAARLLE----AGQPFIKQASMAKYFASEMAG 488
+++ + V H I+++ +E RLLT AA ++ AG K+ +M K A
Sbjct: 310 KKLYAHEVVAHWIAESRIAIEKIRLLTLKAAHSMDTLGSAGAK--KEIAMIKVAAPRAVS 367
Query: 489 HITRQCIDWMGGLGFTKDYPQEKFY 513
I I GG G ++DYP Y
Sbjct: 368 KIVDWAIQVCGGAGVSQDYPLANMY 392
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 107/219 (48%), Gaps = 16/219 (7%)
Query: 2 TTEQKEKYLPRLAQTDAGS-FALSEPG-SGSDAFAMKTTATKDGNHYILNGSKMWISNA- 58
+ EQK+++L L Q + S F ++EP + SDA ++ + +D + Y++NG K W S A
Sbjct: 132 SEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDEDSYVINGKKWWSSGAG 191
Query: 59 ----DIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKAS---GTCSLH 111
IA + N +S+ ++ + +V + G + + + G + G +H
Sbjct: 192 NPKCKIAIVLGRTQNTSLSR-HKQHSMILVPMNTPGVKIIRPLSVFGYTDNFHGGHFEIH 250
Query: 112 FDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGH 171
F+ VRVP N+I G G G++I+ G L GRI + GLA+ L +R
Sbjct: 251 FNQVRVPATNLILGEGRGFEISQGRLGPGRIHHCMRTVGLAERALQIMCERATQRIAFKK 310
Query: 172 RIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLE 210
+++ + V H I+++ +E RLLT AA ++
Sbjct: 311 KLYAHEV-----VAHWIAESRIAIEKIRLLTLKAAHSMD 344
>pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of
Fk520 Polyketide Immunosuppresant
Length = 366
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 110/259 (42%), Gaps = 6/259 (2%)
Query: 262 LGTTEQKEKYLPRLAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 321
LG Q+ +L L + SE +GSD AM+T DG+ +++G K+W + A
Sbjct: 88 LGDAGQRATFLKELTSGKLAAVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAA 147
Query: 322 IANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPE 381
A+ +V + G +V G V + G +A+G LH D VRVP
Sbjct: 148 YADHLVVFGLQEDGSG----AVVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVRVPA 203
Query: 382 ENIISGVGEGYK-IAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQS 440
+++G G + A L GR +A G+ + C A + + R QFG + D Q
Sbjct: 204 GAVLAGSGASLPMLVAASLAYGRKSVAWGCVGILRACRTAAVAHARTREQFGRPLGDHQL 263
Query: 441 VQHQISQAATQVE-CARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMG 499
V I+ T + AR+ Y + E + +AK+ A+E A +
Sbjct: 264 VAGHIADLWTAEQIAARVCEYASDHWDEGSPEMVPATILAKHVAAERAAAGAATAAQVLA 323
Query: 500 GLGFTKDYPQEKFYRDCKM 518
G + + E+ YRD K+
Sbjct: 324 SAGAREGHVVERAYRDAKL 342
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 90/222 (40%), Gaps = 9/222 (4%)
Query: 5 QKEKYLPRLAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIF 64
Q+ +L L + SE +GSD AM+T DG+ +++G K+W + A A+
Sbjct: 93 QRATFLKELTSGKLAAVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYADHL 152
Query: 65 LVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIIS 124
+V + G +V G V + G +A+G LH D VRVP +++
Sbjct: 153 VVFGLQEDGSG----AVVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVRVPAGAVLA 208
Query: 125 GVGEGYK-IAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACNGGS 183
G G + A L GR +A G+ + C A + + R Q G + D Q G
Sbjct: 209 GSGASLPMLVAASLAYGRKSVAWGCVGILRACRTAAVAHARTREQFGRPLGDHQLVAG-- 266
Query: 184 VQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYF 225
H + AR+ Y + E + +AK+
Sbjct: 267 --HIADLWTAEQIAARVCEYASDHWDEGSPEMVPATILAKHV 306
>pdb|3MKH|A Chain A, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|B Chain B, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|C Chain C, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|D Chain D, Podospora Anserina Nitroalkane Oxidase
Length = 438
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 130/301 (43%), Gaps = 40/301 (13%)
Query: 249 IDETVLKTLFESGLGTTEQKEKYLPRLAQ----------TDAGSFALSEPGSGSDAF--- 295
++ + T+F +GLG T P+ A+ + S SEPG ++A
Sbjct: 88 VEPSAALTIFATGLGLTPINLAAGPQHAEFLAPFLSGEGSPLASLVFSEPGGVANALEKG 147
Query: 296 --AMKTTATKDGNHYILNGSKMWISNA--------DIANIFLVMANVDVSKGYRG----- 340
+TTA +G+ +++NG KMW +N D+A + A + +G
Sbjct: 148 APGFQTTARLEGDEWVINGEKMWATNCAGWDFKGCDLACVVCRDATTPLEEGQDPENKVM 207
Query: 341 ---ITCFIVERSMEG-FSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAA 396
+T ++R+ EG F V + G + + + NVRVP +N++ G+G K+A
Sbjct: 208 IILVTRADLDRNGEGSFEVLRHVATPGHTSVSGPHVRYTNVRVPTKNVLCPAGQGAKVAF 267
Query: 397 GFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGH-RIFDFQSVQHQISQAATQVECA 455
G + + + A GL + DA + + E ++ G + + Q+ +S Q E A
Sbjct: 268 GAFDGSAVLVGAMGVGLMRAAFDAALKFAKEDNRGGAVPLLERQAFADLLSGVKIQTEAA 327
Query: 456 RLLTYNAARLLEAG----QPFIKQASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEK 511
R LT+ AA +E G + A AK F SE A + C D + +G + Q
Sbjct: 328 RALTWKAAHAMENGPGDYDARRELALAAKVFCSEAA---VKACTDVINAVGISAYDLQRP 384
Query: 512 F 512
F
Sbjct: 385 F 385
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 97/216 (44%), Gaps = 28/216 (12%)
Query: 20 SFALSEPGSGSDAF-----AMKTTATKDGNHYILNGSKMWISNA--------DIANIFLV 66
S SEPG ++A +TTA +G+ +++NG KMW +N D+A +
Sbjct: 131 SLVFSEPGGVANALEKGAPGFQTTARLEGDEWVINGEKMWATNCAGWDFKGCDLACVVCR 190
Query: 67 MANVDVSKGYRG--------ITCFIVERSMEG-FSVGKKENKLGMKASGTCSLHFDNVRV 117
A + +G +T ++R+ EG F V + G + + + NVRV
Sbjct: 191 DATTPLEEGQDPENKVMIILVTRADLDRNGEGSFEVLRHVATPGHTSVSGPHVRYTNVRV 250
Query: 118 PEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGH-RIFDF 176
P +N++ G+G K+A G + + + A GL + DA + + E ++ G + +
Sbjct: 251 PTKNVLCPAGQGAKVAFGAFDGSAVLVGAMGVGLMRAAFDAALKFAKEDNRGGAVPLLER 310
Query: 177 QACNGGSVQHQISQAVTQVECARLLTYNAARLLEAG 212
QA +S Q E AR LT+ AA +E G
Sbjct: 311 QA-----FADLLSGVKIQTEAARALTWKAAHAMENG 341
>pdb|3M9V|A Chain A, X-Ray Structure Of A Kijd3 In Complex With Dtdp
Length = 439
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 103/236 (43%), Gaps = 24/236 (10%)
Query: 299 TTATKDG-NHYILNGSKMWISNADIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGK 357
TT DG ++L+G K +S A + F++ A D + G + +V R GF+V
Sbjct: 153 TTLRPDGAGGWLLSGRKTLVSMAPVGTHFVINARTDGTDGPPRLASPVVTRDTPGFTVLD 212
Query: 358 KENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQ--GRIGIAAQMTGLAQ 415
+ LGM+ASGT + FD+ +P ++++ G + A Q + + G+AQ
Sbjct: 213 NWDGLGMRASGTVDIVFDDCPIPADHVLMRDPVGARNDAVLAGQTVSSVSVLGVYVGVAQ 272
Query: 416 GCLDATIPYTLER-------------SQFGHRIFDFQSVQHQISQAATQVECARLLTYN- 461
D + LER ++ R++ ++ A + + A L+ +
Sbjct: 273 AAYDTAV-AALERRPEPPQAAALTLVAEIDSRLYALRAT------AGSALTAADALSADL 325
Query: 462 AARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCK 517
+ + E G+ ++ AK + +A I C+ +GG +T +P + RD +
Sbjct: 326 SGDMDERGRQMMRHFQCAKLAVNRLAPEIVSDCLSLVGGASYTAGHPLARLLRDVQ 381
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 31/194 (15%)
Query: 37 TTATKDG-NHYILNGSKMWISNADIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGK 95
TT DG ++L+G K +S A + F++ A D + G + +V R GF+V
Sbjct: 153 TTLRPDGAGGWLLSGRKTLVSMAPVGTHFVINARTDGTDGPPRLASPVVTRDTPGFTVLD 212
Query: 96 KENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQ--GRIGIAAQMTGLAQ 153
+ LGM+ASGT + FD+ +P ++++ G + A Q + + G+AQ
Sbjct: 213 NWDGLGMRASGTVDIVFDDCPIPADHVLMRDPVGARNDAVLAGQTVSSVSVLGVYVGVAQ 272
Query: 154 GCLDATIPYTLER-------------SQVGHRIFDFQACNG--------------GSVQH 186
D + LER +++ R++ +A G G +
Sbjct: 273 AAYDTAV-AALERRPEPPQAAALTLVAEIDSRLYALRATAGSALTAADALSADLSGDMDE 331
Query: 187 QISQAVTQVECARL 200
+ Q + +CA+L
Sbjct: 332 RGRQMMRHFQCAKL 345
>pdb|3MXL|A Chain A, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|B Chain B, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|C Chain C, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|D Chain D, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
Length = 395
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 110/266 (41%), Gaps = 18/266 (6%)
Query: 289 GSGSDAFAMKTTATKDG-NHYILNGSKMWISNADIANIFLVMANVDVSKGYRGITCFIVE 347
G+ DA + T DG ++L+G K+ +S A IA F V A G + +V
Sbjct: 132 GALKDAPGVVTELHSDGAGGWLLSGRKVLVSMAPIATHFFVHAQRRDDDGSVFLAVPVVH 191
Query: 348 RSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQ--GRIG 405
R G +V + LGM+ASGT + FD V + ++ G + A Q I
Sbjct: 192 RDAPGLTVLDNWDGLGMRASGTLEVVFDRCPVRADELLERGPVGARRDAVLAGQTVSSIT 251
Query: 406 IAAQMTGLAQGCLDATIPYTLER---SQFGHRIFDFQSVQHQISQAATQVECARLLTYNA 462
+ G+AQ D + + R + G R + ++ T V A L +A
Sbjct: 252 MLGIYAGIAQAARDIAVGFCAGRGGEPRAGARAL-VAGLDTRLYALRTTVGAA-LTNADA 309
Query: 463 ARLLEAGQPFIKQASM------AKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDC 516
A + +G P + M AK +E+A + C+ +GGL +T +P + YRD
Sbjct: 310 ASVDLSGDPDERGRRMMTPFQYAKMTVNELAPAVVDDCLSLVGGLAYTAGHPLSRLYRDV 369
Query: 517 KMAGHITR----QCIDWMGGLGFTKD 538
+ G + +D++ G D
Sbjct: 370 RAGGFMQPYSYVDAVDYLSGQALGLD 395
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 27 GSGSDAFAMKTTATKDG-NHYILNGSKMWISNADIANIFLVMANVDVSKGYRGITCFIVE 85
G+ DA + T DG ++L+G K+ +S A IA F V A G + +V
Sbjct: 132 GALKDAPGVVTELHSDGAGGWLLSGRKVLVSMAPIATHFFVHAQRRDDDGSVFLAVPVVH 191
Query: 86 RSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENII 123
R G +V + LGM+ASGT + FD V + ++
Sbjct: 192 RDAPGLTVLDNWDGLGMRASGTLEVVFDRCPVRADELL 229
>pdb|3DJL|A Chain A, Crystal Structure Of Alkylation Response Protein E. Coli
Aidb
pdb|3U33|A Chain A, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|B Chain B, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|C Chain C, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|D Chain D, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|E Chain E, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|F Chain F, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|G Chain G, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|H Chain H, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|I Chain I, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|J Chain J, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|K Chain K, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|L Chain L, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
Length = 541
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 125/295 (42%), Gaps = 43/295 (14%)
Query: 285 LSEPGSGSDAFAMKTTATK--DGNHYILNGSKMWISNADIANIFLVMANVDVSKGYRGIT 342
++E GSD + T A + DG+ Y L G K W + ++ LV+A + G G++
Sbjct: 184 MTEKQGGSDVMSNTTRAERLEDGS-YRLVGHK-WFFSVPQSDAHLVLAQ---TAG--GLS 236
Query: 343 CFIVERSM-----EGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAG 397
CF V R + + + ++KLG +++ +C + F + ++ GEG ++
Sbjct: 237 CFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCEVEFQDA---IGWLLGLEGEGIRLILK 293
Query: 398 FLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARL 457
R A + + I + +R FG+ + ++H +S+ A Q+E
Sbjct: 294 MGGMTRFDCALGSHAMMRRAFSLAIYHAHQRHVFGNPLIQQPLMRHVLSRMALQLEGQTA 353
Query: 458 LTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCK 517
L + AR + + K+A A+ F P KF CK
Sbjct: 354 LLFRLARAWDR-RADAKEALWARLFT------------------------PAAKFV-ICK 387
Query: 518 MAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNIQLSTIAKYIAKE 572
+ ++ +GG+G+ ++ + YR+ V +I+EG+ NI + + + K+
Sbjct: 388 RGMPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNKQ 442
>pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|1IS2|B Chain B, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|2DDH|A Chain A, Crystal Structure Of Acyl-Coa Oxidase Complexed With
3-Oh-Dodecanoate
Length = 661
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 99/229 (43%), Gaps = 42/229 (18%)
Query: 254 LKTLFESGLGTTEQKEKY-LPRLAQTDAGSFALSEPGSGSDAFAMKTTATKDG--NHYIL 310
L TL T EQ+E++ +P G++A +E G G+ ++TTAT D +IL
Sbjct: 108 LPTLLHQA--TAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFIL 165
Query: 311 NGS-----KMWISN-ADIANIFLVMANVDVSKGYRGITCFIV-------ERSMEGFSVGK 357
N K W +N +V+A + G+ F+V + + G +VG
Sbjct: 166 NSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGD 225
Query: 358 KENKLGMKASGTCSLHFDNVRVPEENIISGVGE-----------GYKIAAG---FLNQGR 403
K G + L DN R+P EN++ + K+ G F+
Sbjct: 226 IGPKFGYEEMDNGYLKMDNYRIPRENMLMKYAQVKPDGTYVKPLSNKLTYGTMVFVRSFL 285
Query: 404 IGIAAQMTGLAQGCLDATIPYT-------LERSQFGHRIFDFQSVQHQI 445
+G AAQ L++ C A I Y+ +++S+ +I DFQ+ Q+++
Sbjct: 286 VGNAAQ--SLSKACTIA-IRYSAVRRQSEIKQSEPEPQILDFQTQQYKL 331
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 91/213 (42%), Gaps = 40/213 (18%)
Query: 2 TTEQKEKY-LPRLAQTDAGSFALSEPGSGSDAFAMKTTATKDG--NHYILNGS-----KM 53
T EQ+E++ +P G++A +E G G+ ++TTAT D +ILN K
Sbjct: 116 TAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKW 175
Query: 54 WISN-ADIANIFLVMANVDVSKGYRGITCFIV-------ERSMEGFSVGKKENKLGMKAS 105
W +N +V+A + G+ F+V + + G +VG K G +
Sbjct: 176 WPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFGYEEM 235
Query: 106 GTCSLHFDNVRVPEENIISGVGE-----------GYKIAAG---FLNQGRIGIAAQMTGL 151
L DN R+P EN++ + K+ G F+ +G AAQ L
Sbjct: 236 DNGYLKMDNYRIPRENMLMKYAQVKPDGTYVKPLSNKLTYGTMVFVRSFLVGNAAQ--SL 293
Query: 152 AQGCLDATIPYT-------LERSQVGHRIFDFQ 177
++ C A I Y+ +++S+ +I DFQ
Sbjct: 294 SKACTIA-IRYSAVRRQSEIKQSEPEPQILDFQ 325
>pdb|4DOY|A Chain A, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|B Chain B, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|C Chain C, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|D Chain D, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|E Chain E, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|F Chain F, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|G Chain G, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|H Chain H, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
Length = 437
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 15/175 (8%)
Query: 262 LGTTEQKEKYLPRLAQTDAGS-FALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNA 320
+G+ EQ+E ++AQ + + A SE S + + T T+DG Y+LNG+K + S A
Sbjct: 127 IGSQEQEEHLYTQIAQNNWWTGNASSENNSHVLDWKVSATPTEDGG-YVLNGTKHFCSGA 185
Query: 321 DIANIFLVMANV-DVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRV 379
+++ V V D S I + S G + +GM+ + + S F NV+V
Sbjct: 186 KGSDLLFVFGVVQDDSPQQGAIIAAAIPTSRAGVTPNDDWAAIGMRQTDSGSTDFHNVKV 245
Query: 380 PEENIISGVGEGYKIAAGFLNQGRIGIAAQMT---------GLAQGCLDATIPYT 425
+ ++ G + +A F+ R + A + G+A G LDA YT
Sbjct: 246 EPDEVL-GAPNAFVLA--FIQSERGSLFAPIAQLIFANVYLGIAHGALDAAREYT 297
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 15/171 (8%)
Query: 4 EQKEKYLPRLAQTDAGS-FALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIAN 62
EQ+E ++AQ + + A SE S + + T T+DG Y+LNG+K + S A ++
Sbjct: 131 EQEEHLYTQIAQNNWWTGNASSENNSHVLDWKVSATPTEDGG-YVLNGTKHFCSGAKGSD 189
Query: 63 IFLVMANV-DVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEEN 121
+ V V D S I + S G + +GM+ + + S F NV+V +
Sbjct: 190 LLFVFGVVQDDSPQQGAIIAAAIPTSRAGVTPNDDWAAIGMRQTDSGSTDFHNVKVEPDE 249
Query: 122 IISGVGEGYKIAAGFLNQGRIGIAAQMT---------GLAQGCLDATIPYT 163
++ G + +A F+ R + A + G+A G LDA YT
Sbjct: 250 VL-GAPNAFVLA--FIQSERGSLFAPIAQLIFANVYLGIAHGALDAAREYT 297
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|B Chain B, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|C Chain C, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
Length = 683
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 19/149 (12%)
Query: 261 GLGTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDG--NHYI-----LNG 312
G GT +Q+EK+LP + G +A +E G GS+ ++TTAT D + ++ L
Sbjct: 131 GQGTDKQQEKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTS 190
Query: 313 SKMWISN-ADIANIFLVMANVDVSKGYRGITCFIVE-RSME------GFSVGKKENKLGM 364
SK W ++ +V A + G+ FIV+ RS+E G +VG K G
Sbjct: 191 SKWWPGGLGKVSTHAVVYARLITDGKDYGVNGFIVQLRSLEDHKPLPGVTVGDIGMKFGN 250
Query: 365 KASGTCS---LHFDNVRVPEENIISGVGE 390
A + L FD+VR+P + ++ V +
Sbjct: 251 GAYNSMDNGVLSFDHVRIPRDQMLMRVSQ 279
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 19/146 (13%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDG--NHYI-----LNGSKM 53
T +Q+EK+LP + G +A +E G GS+ ++TTAT D + ++ L SK
Sbjct: 134 TDKQQEKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKW 193
Query: 54 WISN-ADIANIFLVMANVDVSKGYRGITCFIVE-RSME------GFSVGKKENKLGMKAS 105
W ++ +V A + G+ FIV+ RS+E G +VG K G A
Sbjct: 194 WPGGLGKVSTHAVVYARLITDGKDYGVNGFIVQLRSLEDHKPLPGVTVGDIGMKFGNGAY 253
Query: 106 GTCS---LHFDNVRVPEENIISGVGE 128
+ L FD+VR+P + ++ V +
Sbjct: 254 NSMDNGVLSFDHVRIPRDQMLMRVSQ 279
>pdb|2ZAF|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|B Chain B, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|C Chain C, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|D Chain D, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
Length = 439
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 83/196 (42%), Gaps = 28/196 (14%)
Query: 297 MKTTATKDGNHYILNGSKMWISN--------ADIANIFLVMANVDVSKGYRG-------I 341
++TTA K GN ++++G K+W SN AD+A + +++ D SK I
Sbjct: 150 LQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSD-DPSKPQDPNVDPATQI 208
Query: 342 TCFIVERSM------EGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVG---EGY 392
+V R + + + + G + F VP EN++ G +G
Sbjct: 209 AVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGL 268
Query: 393 KIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHR-IFDFQSVQHQISQAATQ 451
A ++ +G A G A+ + + + ++ G + I + QSV ++ +
Sbjct: 269 VETAFAMSAALVG--AMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIR 326
Query: 452 VECARLLTYNAARLLE 467
+E +RLL + A LE
Sbjct: 327 LETSRLLVWKAVTTLE 342
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 83/201 (41%), Gaps = 33/201 (16%)
Query: 35 MKTTATKDGNHYILNGSKMWISN--------ADIANIFLVMANVDVSKGYRG-------I 79
++TTA K GN ++++G K+W SN AD+A + +++ D SK I
Sbjct: 150 LQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSD-DPSKPQDPNVDPATQI 208
Query: 80 TCFIVERSM------EGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVG---EGY 130
+V R + + + + G + F VP EN++ G +G
Sbjct: 209 AVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGL 268
Query: 131 KIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHR-IFDFQACNGGSVQHQIS 189
A ++ +G A G A+ + + + ++ G + I + Q SV ++
Sbjct: 269 VETAFAMSAALVG--AMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQ-----SVADKLI 321
Query: 190 QAVTQVECARLLTYNAARLLE 210
++E +RLL + A LE
Sbjct: 322 DCKIRLETSRLLVWKAVTTLE 342
>pdb|2REH|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|B Chain B, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|C Chain C, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|D Chain D, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
Length = 439
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 83/196 (42%), Gaps = 28/196 (14%)
Query: 297 MKTTATKDGNHYILNGSKMWISN--------ADIANIFLVMANVDVSKGYRG-------I 341
++TTA K GN ++++G K+W SN AD+A + +++ D SK I
Sbjct: 150 LQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSD-DPSKPQDPNVDPATQI 208
Query: 342 TCFIVERSM------EGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVG---EGY 392
+V R + + + + G + F VP EN++ G +G
Sbjct: 209 AVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGL 268
Query: 393 KIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHR-IFDFQSVQHQISQAATQ 451
A ++ +G A G A+ + + + ++ G + I + QSV ++ +
Sbjct: 269 VETAFAMSAALVG--AMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIR 326
Query: 452 VECARLLTYNAARLLE 467
+E +RLL + A LE
Sbjct: 327 LETSRLLVWKAVTTLE 342
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 83/201 (41%), Gaps = 33/201 (16%)
Query: 35 MKTTATKDGNHYILNGSKMWISN--------ADIANIFLVMANVDVSKGYRG-------I 79
++TTA K GN ++++G K+W SN AD+A + +++ D SK I
Sbjct: 150 LQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSD-DPSKPQDPNVDPATQI 208
Query: 80 TCFIVERSM------EGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVG---EGY 130
+V R + + + + G + F VP EN++ G +G
Sbjct: 209 AVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGL 268
Query: 131 KIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHR-IFDFQACNGGSVQHQIS 189
A ++ +G A G A+ + + + ++ G + I + Q SV ++
Sbjct: 269 VETAFAMSAALVG--AMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQ-----SVADKLI 321
Query: 190 QAVTQVECARLLTYNAARLLE 210
++E +RLL + A LE
Sbjct: 322 DCKIRLETSRLLVWKAVTTLE 342
>pdb|2C12|A Chain A, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|B Chain B, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|C Chain C, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|D Chain D, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|E Chain E, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|F Chain F, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
Length = 439
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 83/196 (42%), Gaps = 28/196 (14%)
Query: 297 MKTTATKDGNHYILNGSKMWISN--------ADIANIFLVMANVDVSKGYRG-------I 341
++TTA K GN ++++G K+W SN AD+A + +++ D SK I
Sbjct: 150 LQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSD-DPSKPQDPNVDPATQI 208
Query: 342 TCFIVERSM------EGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVG---EGY 392
+V R + + + + G + F VP EN++ G +G
Sbjct: 209 AVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGL 268
Query: 393 KIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHR-IFDFQSVQHQISQAATQ 451
A ++ +G A G A+ + + + ++ G + I + QSV ++ +
Sbjct: 269 VETAFAMSAALVG--AMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIR 326
Query: 452 VECARLLTYNAARLLE 467
+E +RLL + A LE
Sbjct: 327 LETSRLLVWKAVTTLE 342
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 83/201 (41%), Gaps = 33/201 (16%)
Query: 35 MKTTATKDGNHYILNGSKMWISN--------ADIANIFLVMANVDVSKGYRG-------I 79
++TTA K GN ++++G K+W SN AD+A + +++ D SK I
Sbjct: 150 LQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSD-DPSKPQDPNVDPATQI 208
Query: 80 TCFIVERSM------EGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVG---EGY 130
+V R + + + + G + F VP EN++ G +G
Sbjct: 209 AVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGL 268
Query: 131 KIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHR-IFDFQACNGGSVQHQIS 189
A ++ +G A G A+ + + + ++ G + I + Q SV ++
Sbjct: 269 VETAFAMSAALVG--AMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQ-----SVADKLI 321
Query: 190 QAVTQVECARLLTYNAARLLE 210
++E +RLL + A LE
Sbjct: 322 DCKIRLETSRLLVWKAVTTLE 342
>pdb|3D9G|A Chain A, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|B Chain B, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|C Chain C, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|D Chain D, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
Length = 438
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 83/196 (42%), Gaps = 28/196 (14%)
Query: 297 MKTTATKDGNHYILNGSKMWISN--------ADIANIFLVMANVDVSKGYRG-------I 341
++TTA K GN ++++G K+W SN AD+A + +++ D SK I
Sbjct: 149 LQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSD-DPSKPQDPNVDPATQI 207
Query: 342 TCFIVERSM------EGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVG---EGY 392
+V R + + + + G + F VP EN++ G +G
Sbjct: 208 AVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGL 267
Query: 393 KIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHR-IFDFQSVQHQISQAATQ 451
A ++ +G A G A+ + + + ++ G + I + QSV ++ +
Sbjct: 268 VETAFAMSAALVG--AMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIR 325
Query: 452 VECARLLTYNAARLLE 467
+E +RLL + A LE
Sbjct: 326 LETSRLLVWKAVTTLE 341
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 83/201 (41%), Gaps = 33/201 (16%)
Query: 35 MKTTATKDGNHYILNGSKMWISN--------ADIANIFLVMANVDVSKGYRG-------I 79
++TTA K GN ++++G K+W SN AD+A + +++ D SK I
Sbjct: 149 LQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSD-DPSKPQDPNVDPATQI 207
Query: 80 TCFIVERSM------EGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVG---EGY 130
+V R + + + + G + F VP EN++ G +G
Sbjct: 208 AVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGL 267
Query: 131 KIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHR-IFDFQACNGGSVQHQIS 189
A ++ +G A G A+ + + + ++ G + I + Q SV ++
Sbjct: 268 VETAFAMSAALVG--AMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQ-----SVADKLI 320
Query: 190 QAVTQVECARLLTYNAARLLE 210
++E +RLL + A LE
Sbjct: 321 DCKIRLETSRLLVWKAVTTLE 341
>pdb|3D9D|A Chain A, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|B Chain B, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|C Chain C, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|D Chain D, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9E|A Chain A, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|B Chain B, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|C Chain C, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|D Chain D, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3FCJ|A Chain A, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|B Chain B, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|C Chain C, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|D Chain D, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
Length = 438
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 83/196 (42%), Gaps = 28/196 (14%)
Query: 297 MKTTATKDGNHYILNGSKMWISN--------ADIANIFLVMANVDVSKGYRG-------I 341
++TTA K GN ++++G K+W SN AD+A + +++ D SK I
Sbjct: 149 LQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSD-DPSKPQDPNVDPATQI 207
Query: 342 TCFIVERSM------EGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVG---EGY 392
+V R + + + + G + F VP EN++ G +G
Sbjct: 208 AVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGL 267
Query: 393 KIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHR-IFDFQSVQHQISQAATQ 451
A ++ +G A G A+ + + + ++ G + I + QSV ++ +
Sbjct: 268 VETAFAMSAALVG--AMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIR 325
Query: 452 VECARLLTYNAARLLE 467
+E +RLL + A LE
Sbjct: 326 LETSRLLVWKAVTTLE 341
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 83/201 (41%), Gaps = 33/201 (16%)
Query: 35 MKTTATKDGNHYILNGSKMWISN--------ADIANIFLVMANVDVSKGYRG-------I 79
++TTA K GN ++++G K+W SN AD+A + +++ D SK I
Sbjct: 149 LQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSD-DPSKPQDPNVDPATQI 207
Query: 80 TCFIVERSM------EGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVG---EGY 130
+V R + + + + G + F VP EN++ G +G
Sbjct: 208 AVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGL 267
Query: 131 KIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHR-IFDFQACNGGSVQHQIS 189
A ++ +G A G A+ + + + ++ G + I + Q SV ++
Sbjct: 268 VETAFAMSAALVG--AMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQ-----SVADKLI 320
Query: 190 QAVTQVECARLLTYNAARLLE 210
++E +RLL + A LE
Sbjct: 321 DCKIRLETSRLLVWKAVTTLE 341
>pdb|2C0U|A Chain A, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|B Chain B, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|C Chain C, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|D Chain D, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
Length = 439
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 81/195 (41%), Gaps = 26/195 (13%)
Query: 297 MKTTATKDGNHYILNGSKMWISN--------ADIANIFLVMANVDVSKGYRG-------I 341
++TTA K GN ++++G K+W SN AD+A + +++ D SK I
Sbjct: 150 LQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSD-DPSKPQDPNVDPATQI 208
Query: 342 TCFIVERSM------EGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYK-- 393
+V R + + + + G + F VP EN++ G +
Sbjct: 209 AVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGL 268
Query: 394 IAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHR-IFDFQSVQHQISQAATQV 452
+ F + + A G A+ + + + ++ G + I + QSV ++ ++
Sbjct: 269 VETAFAXSAAL-VGAXAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRL 327
Query: 453 ECARLLTYNAARLLE 467
E +RLL + A LE
Sbjct: 328 ETSRLLVWKAVTTLE 342
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 81/200 (40%), Gaps = 31/200 (15%)
Query: 35 MKTTATKDGNHYILNGSKMWISN--------ADIANIFLVMANVDVSKGYRG-------I 79
++TTA K GN ++++G K+W SN AD+A + +++ D SK I
Sbjct: 150 LQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSD-DPSKPQDPNVDPATQI 208
Query: 80 TCFIVERSM------EGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYK-- 131
+V R + + + + G + F VP EN++ G +
Sbjct: 209 AVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGL 268
Query: 132 IAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHR-IFDFQACNGGSVQHQISQ 190
+ F + + A G A+ + + + ++ G + I + Q SV ++
Sbjct: 269 VETAFAXSAAL-VGAXAIGTARAAFEEALVFAKSDTRGGSKHIIEHQ-----SVADKLID 322
Query: 191 AVTQVECARLLTYNAARLLE 210
++E +RLL + A LE
Sbjct: 323 CKIRLETSRLLVWKAVTTLE 342
>pdb|3D9F|A Chain A, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|B Chain B, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|C Chain C, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|D Chain D, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
Length = 438
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 82/196 (41%), Gaps = 28/196 (14%)
Query: 297 MKTTATKDGNHYILNGSKMWISN--------ADIANIFLVMANVDVSKGYRG-------I 341
++TTA K GN ++++G K+W SN AD+A + +++ D SK I
Sbjct: 149 LQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSD-DPSKPQDPNVDPATQI 207
Query: 342 TCFIVERSM------EGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVG---EGY 392
+V R + + + + G + F VP EN++ G +G
Sbjct: 208 AVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGL 267
Query: 393 KIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHR-IFDFQSVQHQISQAATQ 451
A + +G A G A+ + + + ++ G + I + QSV ++ +
Sbjct: 268 VETAFAMAAALVG--AMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIR 325
Query: 452 VECARLLTYNAARLLE 467
+E +RLL + A LE
Sbjct: 326 LETSRLLVWKAVTTLE 341
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 79/198 (39%), Gaps = 27/198 (13%)
Query: 35 MKTTATKDGNHYILNGSKMWISN--------ADIANIFLVMANVDVSKGYRG-------I 79
++TTA K GN ++++G K+W SN AD+A + +++ D SK I
Sbjct: 149 LQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSD-DPSKPQDPNVDPATQI 207
Query: 80 TCFIVERSM------EGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIA 133
+V R + + + + G + F VP EN++ G +
Sbjct: 208 AVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPG----LK 263
Query: 134 AGFLNQGRIGIAAQMTG-LAQGCLDATIPYTLERSQVGHRIFDFQACNGGSVQHQISQAV 192
A L + +AA + G +A G A L ++ R SV ++
Sbjct: 264 AQGLVETAFAMAAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCK 323
Query: 193 TQVECARLLTYNAARLLE 210
++E +RLL + A LE
Sbjct: 324 IRLETSRLLVWKAVTTLE 341
>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1
pdb|1W07|B Chain B, Arabidopsis Thaliana Acyl-Coa Oxidase 1
Length = 659
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 19/144 (13%)
Query: 261 GLGTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDG--NHYILN-----G 312
G GT EQ++K+L + G +A +E G GS+ ++TTAT D + ++++
Sbjct: 112 GQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTA 171
Query: 313 SKMWISN-ADIANIFLVMANVDVSKGYRGITCFIVE-RSMEGFS------VGKKENKLGM 364
SK W ++ +V A + + GI FIV+ RS+E S VG K+G
Sbjct: 172 SKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGN 231
Query: 365 KASGTCS---LHFDNVRVPEENII 385
A + L FD+VR+P + ++
Sbjct: 232 GAYNSMDNGFLMFDHVRIPRDQML 255
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 19/141 (13%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDG--NHYILN-----GSKM 53
T EQ++K+L + G +A +E G GS+ ++TTAT D + ++++ SK
Sbjct: 115 TEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKW 174
Query: 54 WISN-ADIANIFLVMANVDVSKGYRGITCFIVE-RSMEGFS------VGKKENKLGMKAS 105
W ++ +V A + + GI FIV+ RS+E S VG K+G A
Sbjct: 175 WPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAY 234
Query: 106 GTCS---LHFDNVRVPEENII 123
+ L FD+VR+P + ++
Sbjct: 235 NSMDNGFLMFDHVRIPRDQML 255
>pdb|3AFE|A Chain A, Crystal Structure Of The Hsaa Monooxygenase From
M.Tuberculosis
pdb|3AFE|B Chain B, Crystal Structure Of The Hsaa Monooxygenase From
M.Tuberculosis
pdb|3AFE|C Chain C, Crystal Structure Of The Hsaa Monooxygenase From
M.Tuberculosis
pdb|3AFE|D Chain D, Crystal Structure Of The Hsaa Monooxygenase From
M.Tuberculosis
pdb|3AFF|A Chain A, Crystal Structure Of The Hsaa Monooxygenase From M.
Tuberculosis
pdb|3AFF|B Chain B, Crystal Structure Of The Hsaa Monooxygenase From M.
Tuberculosis
Length = 394
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 98/234 (41%), Gaps = 29/234 (12%)
Query: 308 YILNGSKMWISNADIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKAS 367
Y++NGS W S D A+ V V F++ RS + + +G++ +
Sbjct: 133 YLVNGSWNWSSGCDHASWTFVGGPVIKDGRPVDFGSFLIPRSE--YEIKDVWYVVGLRGT 190
Query: 368 GTCSLHFDNVRVPEENIIS----------GVGEG----YKIAAGFLNQGRIGIAAQMTGL 413
G+ +L +V VP +S G+ YK+ G ++ I+A + G+
Sbjct: 191 GSNTLVVKDVFVPRHRFLSYKAMNDHTAGGLATNSAPVYKMPWGTMHP--TTISAPIVGM 248
Query: 414 AQGCLDATIPYTLERSQ---FGHRIFDFQSVQHQISQAATQVECA-RLLTYNAAR---LL 466
A G A + + +R + G + D + +I++AA+ ++ A R L N + LL
Sbjct: 249 AYGAYAAHVEHQGKRVRAAFAGEKAKDDPFAKVRIAEAASDIDAAWRQLIGNVSDEYALL 308
Query: 467 EAGQ--PFIKQASMAKYFASEMAGHITR--QCIDWMGGLGFTKDYPQEKFYRDC 516
AG+ PF +A + I + + G + + P ++F+RD
Sbjct: 309 AAGKEIPFELRARARRDQVRATGRSIASIDRLFEASGATALSNEAPIQRFWRDA 362
>pdb|2JBR|A Chain A, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumanni
pdb|2JBR|B Chain B, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumanni
pdb|2JBR|C Chain C, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumanni
pdb|2JBR|D Chain D, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumanni
pdb|2JBS|A Chain A, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBS|B Chain B, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBS|C Chain C, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBS|D Chain D, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBT|A Chain A, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBT|B Chain B, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBT|C Chain C, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBT|D Chain D, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
Length = 422
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 96/237 (40%), Gaps = 29/237 (12%)
Query: 309 ILNGSKMWISNADIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASG 368
ILNG W S D A +V N + G + + ++ RS + + +K+SG
Sbjct: 162 ILNGDYGWSSGCDHAEYAIVGFNRFDADGNKIYSFGVIPRS--DYEIVDNWYAQAIKSSG 219
Query: 369 TCSLHFDNVRVPE------ENIISGVGEG---YKIAAGFLNQGRIGIAAQMTGLAQGCLD 419
+ L NV +PE ++++ G G Y + F R A+ + ++ G +
Sbjct: 220 SKMLKLVNVFIPEYRISKAKDMMEGKSAGFGLYPDSKIFYTPYRPYFASGFSAVSLGIAE 279
Query: 420 ATIPYTLERSQFGHRIFDFQSV------QHQISQAATQVECARLL---TYNAARLLEAGQ 470
I E+ + R + +V +I+++ QV AR L T+ R+
Sbjct: 280 RMIEAFKEKQRNRVRAYTGANVGLATPALMRIAESTHQVAAARALLEKTWEDHRIHGLNH 339
Query: 471 PFIKQASMAKYFASEMAGHITRQCIDWM-------GGLGFTKDYPQEKFYRDCKMAG 520
+ + ++A + ++ + + CI+ + G F + ++ +RD M G
Sbjct: 340 QYPNKETLAFWRTNQ--AYAVKMCIEAVDRLMAAAGATSFMDNSELQRLFRDAHMTG 394
>pdb|4IIU|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Escherichia Coli Strain Cft073
Complexed With Nadp+ At 2.1 A Resolution
pdb|4IIU|B Chain B, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Escherichia Coli Strain Cft073
Complexed With Nadp+ At 2.1 A Resolution
pdb|4IIU|C Chain C, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Escherichia Coli Strain Cft073
Complexed With Nadp+ At 2.1 A Resolution
pdb|4IIU|D Chain D, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Escherichia Coli Strain Cft073
Complexed With Nadp+ At 2.1 A Resolution
pdb|4IIV|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Escherichia Coli Strain Cft073
Complexed With Nadp+ At 2.5 A Resolution
pdb|4IIV|B Chain B, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Escherichia Coli Strain Cft073
Complexed With Nadp+ At 2.5 A Resolution
pdb|4IIV|C Chain C, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Escherichia Coli Strain Cft073
Complexed With Nadp+ At 2.5 A Resolution
pdb|4IIV|D Chain D, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Escherichia Coli Strain Cft073
Complexed With Nadp+ At 2.5 A Resolution
Length = 267
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 476 ASMAKYFASEMAGHITRQCIDWMGGL 501
A +A Y S++AG++TRQ I GG+
Sbjct: 241 AGLASYLMSDIAGYVTRQVISINGGM 266
>pdb|2W7Q|A Chain A, Structure Of Pseudomonas Aeruginosa Lola
pdb|2W7Q|B Chain B, Structure Of Pseudomonas Aeruginosa Lola
Length = 204
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 16/131 (12%)
Query: 12 RLAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVD 71
RL +T AG +L PG F T A + I NG K+W+ + D+ + + +
Sbjct: 51 RLQET-AGQLSLKRPG----LFRWHTDAPNE-QLLISNGEKVWLYDPDLEQVTIQKLDQR 104
Query: 72 VSKGYRGITCFIVERSMEGFSVGKKEN----------KLGMKASGTCSLHFDNVRVPEEN 121
+++ + + + E F++ KE K T L F + +V +
Sbjct: 105 LTQTPALLLSGDISKISESFAITYKEGGNVVDFVLKPKTKDTLFDTLRLSFRSGKVNDMQ 164
Query: 122 IISGVGEGYKI 132
+I GVG+ I
Sbjct: 165 MIDGVGQRTNI 175
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 16/131 (12%)
Query: 274 RLAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVD 333
RL +T AG +L PG F T A + I NG K+W+ + D+ + + +
Sbjct: 51 RLQET-AGQLSLKRPG----LFRWHTDAPNE-QLLISNGEKVWLYDPDLEQVTIQKLDQR 104
Query: 334 VSKGYRGITCFIVERSMEGFSVGKKEN----------KLGMKASGTCSLHFDNVRVPEEN 383
+++ + + + E F++ KE K T L F + +V +
Sbjct: 105 LTQTPALLLSGDISKISESFAITYKEGGNVVDFVLKPKTKDTLFDTLRLSFRSGKVNDMQ 164
Query: 384 IISGVGEGYKI 394
+I GVG+ I
Sbjct: 165 MIDGVGQRTNI 175
>pdb|3D3Y|A Chain A, Crystal Structure Of A Conserved Protein From Enterococcus
Faecalis V583
Length = 425
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 225 FASVAKLAKET---IAPYVQKMESEEKIDETVLKTLFESGLGTTEQKEKYLPR 274
F +VA LA+ET +A Y QK +E+++D VL + E+ L ++ + PR
Sbjct: 174 FGTVAALAEETAASLAAYYQKXLAEDQVDIFVLGDVNEAELVPLFKQLPFTPR 226
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,362,911
Number of Sequences: 62578
Number of extensions: 665874
Number of successful extensions: 1601
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1267
Number of HSP's gapped (non-prelim): 168
length of query: 575
length of database: 14,973,337
effective HSP length: 104
effective length of query: 471
effective length of database: 8,465,225
effective search space: 3987120975
effective search space used: 3987120975
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)