Query psy5138
Match_columns 575
No_of_seqs 376 out of 3045
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 18:17:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5138.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5138hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0139|consensus 100.0 1.4E-64 2.9E-69 470.8 23.4 312 214-559 36-398 (398)
2 KOG0140|consensus 100.0 5.1E-63 1.1E-67 451.9 25.1 327 214-574 27-407 (408)
3 KOG0141|consensus 100.0 7.9E-60 1.7E-64 431.2 22.1 326 214-573 40-421 (421)
4 PRK03354 crotonobetainyl-CoA d 100.0 2.5E-51 5.5E-56 422.9 36.1 325 215-574 5-380 (380)
5 PRK12341 putative acyl-CoA deh 100.0 3.8E-51 8.3E-56 422.0 37.1 325 215-574 5-381 (381)
6 cd01157 MCAD Medium chain acyl 100.0 6.1E-51 1.3E-55 420.7 36.0 323 216-572 2-378 (378)
7 PLN02519 isovaleryl-CoA dehydr 100.0 1.2E-50 2.6E-55 420.6 37.2 325 214-572 25-403 (404)
8 TIGR03207 cyc_hxne_CoA_dh cycl 100.0 1.2E-50 2.5E-55 417.3 34.7 317 216-568 2-370 (372)
9 cd01160 LCAD Long chain acyl-C 100.0 1.5E-50 3.2E-55 417.1 35.6 318 218-569 2-371 (372)
10 cd01151 GCD Glutaryl-CoA dehyd 100.0 2.4E-50 5.3E-55 416.7 36.8 320 215-572 13-383 (386)
11 cd01162 IBD Isobutyryl-CoA deh 100.0 1.9E-50 4.1E-55 416.2 35.8 322 216-572 2-375 (375)
12 TIGR03203 pimD_small pimeloyl- 100.0 1.2E-50 2.6E-55 415.9 33.2 317 215-568 4-375 (378)
13 cd01156 IVD Isovaleryl-CoA deh 100.0 3.4E-50 7.3E-55 415.1 36.0 322 216-571 3-376 (376)
14 PTZ00461 isovaleryl-CoA dehydr 100.0 1.3E-49 2.9E-54 413.6 35.2 320 215-573 37-409 (410)
15 PLN02526 acyl-coenzyme A oxida 100.0 2.5E-49 5.4E-54 411.2 36.0 320 215-572 29-399 (412)
16 cd01161 VLCAD Very long chain 100.0 8.1E-49 1.7E-53 408.0 35.7 323 215-573 27-408 (409)
17 cd01158 SCAD_SBCAD Short chain 100.0 1.3E-48 2.9E-53 403.1 35.2 319 219-571 3-373 (373)
18 cd01155 ACAD_FadE2 Acyl-CoA de 100.0 2.2E-48 4.9E-53 402.9 35.6 318 220-571 4-394 (394)
19 TIGR03204 pimC_large pimeloyl- 100.0 3.9E-47 8.4E-52 392.6 35.6 329 215-571 4-394 (395)
20 COG1960 CaiA Acyl-CoA dehydrog 100.0 4E-47 8.8E-52 394.3 35.2 324 217-574 7-391 (393)
21 PLN02636 acyl-coenzyme A oxida 100.0 2.4E-47 5.3E-52 411.5 32.4 280 263-574 156-488 (686)
22 PRK09463 fadE acyl-CoA dehydro 100.0 1.2E-46 2.5E-51 406.2 34.2 314 215-565 79-466 (777)
23 PRK13026 acyl-CoA dehydrogenas 100.0 4.3E-46 9.3E-51 400.1 34.8 289 241-565 101-465 (774)
24 cd00567 ACAD Acyl-CoA dehydrog 100.0 2E-45 4.4E-50 372.8 35.6 315 219-567 3-327 (327)
25 cd01154 AidB Proteins involved 100.0 1.9E-45 4E-50 382.3 33.3 271 263-570 127-417 (418)
26 cd01153 ACAD_fadE5 Putative ac 100.0 2.9E-45 6.2E-50 380.8 34.7 308 226-568 3-405 (407)
27 PLN02876 acyl-CoA dehydrogenas 100.0 7.1E-45 1.5E-49 406.9 36.1 278 263-572 533-819 (822)
28 PTZ00456 acyl-CoA dehydrogenas 100.0 1.1E-44 2.4E-49 387.4 34.7 318 216-570 57-479 (622)
29 PLN02312 acyl-CoA oxidase 100.0 4.2E-45 9.1E-50 393.1 31.4 280 263-574 168-490 (680)
30 cd01152 ACAD_fadE6_17_26 Putat 100.0 1.1E-44 2.4E-49 373.8 30.1 313 219-571 3-380 (380)
31 KOG0138|consensus 100.0 5E-45 1.1E-49 332.9 22.7 320 214-571 54-426 (432)
32 PTZ00460 acyl-CoA dehydrogenas 100.0 3.2E-44 6.9E-49 384.9 31.2 281 262-574 109-434 (646)
33 KOG0137|consensus 100.0 1.6E-44 3.5E-49 358.8 26.1 297 241-569 102-458 (634)
34 KOG0139|consensus 100.0 2.6E-45 5.7E-50 342.0 17.5 252 2-274 135-386 (398)
35 PRK11561 isovaleryl CoA dehydr 100.0 8.9E-44 1.9E-48 371.8 29.8 269 263-572 148-442 (538)
36 cd01163 DszC Dibenzothiophene 100.0 2E-42 4.4E-47 356.9 27.1 285 229-521 4-356 (377)
37 cd01150 AXO Peroxisomal acyl-C 100.0 4.4E-42 9.6E-47 369.4 28.4 280 263-574 117-447 (610)
38 PLN02443 acyl-coenzyme A oxida 100.0 5.2E-41 1.1E-45 360.6 30.4 280 263-574 114-443 (664)
39 KOG0140|consensus 100.0 2.3E-41 5.1E-46 309.8 17.4 217 2-223 125-345 (408)
40 cd01159 NcnH Naphthocyclinone 100.0 1.3E-40 2.7E-45 342.5 24.1 293 233-571 7-370 (370)
41 KOG0141|consensus 100.0 1.6E-40 3.5E-45 304.5 15.5 230 2-238 141-373 (421)
42 KOG1469|consensus 100.0 7.5E-39 1.6E-43 288.2 15.6 277 263-571 96-382 (392)
43 TIGR03203 pimD_small pimeloyl- 100.0 1.7E-35 3.6E-40 303.9 26.5 203 2-212 102-306 (378)
44 PLN02519 isovaleryl-CoA dehydr 100.0 2.2E-34 4.9E-39 298.9 27.9 217 2-223 126-343 (404)
45 KOG0137|consensus 100.0 1.7E-34 3.6E-39 287.5 25.4 444 2-542 176-632 (634)
46 cd01156 IVD Isovaleryl-CoA deh 100.0 4.4E-34 9.5E-39 295.0 27.6 208 2-214 100-308 (376)
47 PRK12341 putative acyl-CoA deh 100.0 5.2E-34 1.1E-38 294.4 27.7 216 2-223 101-319 (381)
48 cd01157 MCAD Medium chain acyl 100.0 4.8E-34 1E-38 294.8 27.4 217 2-223 98-318 (378)
49 TIGR03207 cyc_hxne_CoA_dh cycl 100.0 4.4E-34 9.5E-39 294.2 26.8 216 2-223 98-315 (372)
50 PRK03354 crotonobetainyl-CoA d 100.0 6.3E-34 1.4E-38 293.5 27.4 216 2-223 102-318 (380)
51 cd01160 LCAD Long chain acyl-C 100.0 7.6E-34 1.6E-38 292.8 27.7 217 2-223 96-314 (372)
52 cd01151 GCD Glutaryl-CoA dehyd 100.0 1.4E-33 3E-38 291.7 27.8 213 2-223 110-323 (386)
53 KOG0138|consensus 100.0 3.1E-34 6.8E-39 262.3 17.9 214 2-224 152-368 (432)
54 cd01162 IBD Isobutyryl-CoA deh 100.0 3.7E-33 8E-38 287.6 27.3 206 2-213 98-304 (375)
55 PTZ00457 acyl-CoA dehydrogenas 100.0 2.1E-33 4.6E-38 291.7 25.4 233 263-562 117-362 (520)
56 PRK09463 fadE acyl-CoA dehydro 100.0 3E-33 6.4E-38 302.4 26.8 216 2-223 177-411 (777)
57 PTZ00461 isovaleryl-CoA dehydr 100.0 3.5E-33 7.5E-38 290.6 25.9 203 2-214 135-339 (410)
58 cd01155 ACAD_FadE2 Acyl-CoA de 100.0 7.9E-33 1.7E-37 286.7 28.4 206 2-212 109-322 (394)
59 PLN02526 acyl-coenzyme A oxida 100.0 8.8E-33 1.9E-37 287.2 27.9 213 2-223 126-339 (412)
60 PRK13026 acyl-CoA dehydrogenas 100.0 7.1E-33 1.5E-37 298.2 27.0 213 2-223 176-410 (774)
61 cd00567 ACAD Acyl-CoA dehydrog 100.0 2.8E-32 6E-37 276.5 29.3 208 2-214 53-262 (327)
62 cd01161 VLCAD Very long chain 100.0 9.9E-33 2.1E-37 287.3 26.6 207 2-213 122-335 (409)
63 COG1960 CaiA Acyl-CoA dehydrog 100.0 1E-32 2.3E-37 286.4 26.5 217 2-223 109-329 (393)
64 cd01158 SCAD_SBCAD Short chain 100.0 2.2E-32 4.7E-37 282.3 27.1 217 2-223 97-314 (373)
65 PRK11561 isovaleryl CoA dehydr 100.0 5.5E-32 1.2E-36 283.2 26.5 248 2-274 149-417 (538)
66 TIGR03204 pimC_large pimeloyl- 100.0 1.2E-31 2.6E-36 277.2 27.1 223 2-235 105-331 (395)
67 PLN02636 acyl-coenzyme A oxida 100.0 9E-32 1.9E-36 290.8 27.2 205 2-211 157-409 (686)
68 PTZ00460 acyl-CoA dehydrogenas 100.0 1.8E-31 3.8E-36 286.7 28.2 205 2-211 111-348 (646)
69 cd01154 AidB Proteins involved 100.0 1.8E-31 3.8E-36 277.5 27.1 201 2-212 128-340 (418)
70 cd01153 ACAD_fadE5 Putative ac 100.0 7.9E-31 1.7E-35 272.6 29.4 209 2-213 101-324 (407)
71 PLN02312 acyl-CoA oxidase 100.0 5.2E-31 1.1E-35 284.2 27.8 205 2-211 169-411 (680)
72 PLN02876 acyl-CoA dehydrogenas 100.0 5E-31 1.1E-35 295.4 27.8 205 2-211 534-745 (822)
73 KOG1469|consensus 100.0 1.1E-30 2.4E-35 235.5 18.1 206 2-212 97-310 (392)
74 KOG0135|consensus 100.0 1E-30 2.2E-35 258.0 18.1 280 263-575 140-468 (661)
75 cd01163 DszC Dibenzothiophene 100.0 5.3E-30 1.1E-34 264.5 24.0 200 2-212 88-292 (377)
76 cd01152 ACAD_fadE6_17_26 Putat 100.0 9.1E-30 2E-34 262.7 25.0 211 2-223 101-313 (380)
77 PTZ00456 acyl-CoA dehydrogenas 100.0 1.1E-29 2.3E-34 272.3 25.6 203 2-212 165-396 (622)
78 PLN02443 acyl-coenzyme A oxida 100.0 2.4E-29 5.1E-34 270.7 27.9 210 2-211 115-357 (664)
79 cd01150 AXO Peroxisomal acyl-C 100.0 2.1E-29 4.6E-34 271.4 26.8 198 2-204 118-354 (610)
80 PTZ00457 acyl-CoA dehydrogenas 100.0 3.9E-27 8.4E-32 245.0 38.5 194 2-227 118-321 (520)
81 TIGR02309 HpaB-1 4-hydroxyphen 99.9 1.4E-25 3E-30 232.9 21.9 287 268-568 129-460 (477)
82 cd01159 NcnH Naphthocyclinone 99.9 1.9E-25 4.1E-30 229.8 19.2 172 34-212 108-291 (370)
83 KOG0136|consensus 99.9 1.4E-25 3.1E-30 227.1 16.2 280 263-574 126-451 (670)
84 PF00441 Acyl-CoA_dh_1: Acyl-C 99.9 3.5E-21 7.7E-26 171.8 18.5 150 389-570 1-150 (150)
85 TIGR02309 HpaB-1 4-hydroxyphen 99.9 3.9E-21 8.4E-26 199.8 19.1 205 7-223 130-367 (477)
86 PF08028 Acyl-CoA_dh_2: Acyl-C 99.7 7.3E-17 1.6E-21 140.5 13.4 120 404-523 1-130 (134)
87 KOG0135|consensus 99.7 1.9E-16 4.1E-21 157.5 15.6 206 5-210 143-382 (661)
88 COG2368 Aromatic ring hydroxyl 99.7 8.7E-15 1.9E-19 145.5 20.2 292 268-569 133-470 (493)
89 TIGR02310 HpaB-2 4-hydroxyphen 99.6 4.5E-13 9.8E-18 138.8 27.1 292 268-568 138-474 (519)
90 KOG0136|consensus 99.5 2.5E-13 5.4E-18 138.9 17.3 208 2-209 127-363 (670)
91 PF02770 Acyl-CoA_dh_M: Acyl-C 99.5 6.6E-14 1.4E-18 98.9 7.0 52 20-71 1-52 (52)
92 PF02770 Acyl-CoA_dh_M: Acyl-C 99.5 1.2E-13 2.5E-18 97.7 6.5 52 282-333 1-52 (52)
93 COG2368 Aromatic ring hydroxyl 99.4 4.7E-12 1E-16 126.3 15.6 195 7-211 134-357 (493)
94 TIGR02310 HpaB-2 4-hydroxyphen 99.3 6.8E-11 1.5E-15 122.7 18.2 188 7-211 139-361 (519)
95 PF11794 HpaB_N: 4-hydroxyphen 99.0 2.2E-09 4.8E-14 102.0 10.9 117 7-123 126-263 (264)
96 PF00441 Acyl-CoA_dh_1: Acyl-C 98.9 2.8E-08 6.1E-13 88.2 14.1 103 127-236 1-103 (150)
97 PF11794 HpaB_N: 4-hydroxyphen 98.8 2E-08 4.4E-13 95.4 9.2 117 269-385 126-263 (264)
98 PF08028 Acyl-CoA_dh_2: Acyl-C 98.1 5.3E-05 1.1E-09 65.7 12.5 76 142-220 1-80 (134)
99 PF02771 Acyl-CoA_dh_N: Acyl-C 97.7 5.2E-05 1.1E-09 63.5 4.9 45 216-262 1-45 (113)
100 PF03241 HpaB: 4-hydroxyphenyl 97.4 0.0052 1.1E-07 57.1 14.2 130 433-568 42-189 (205)
101 PF03241 HpaB: 4-hydroxyphenyl 84.4 18 0.00038 33.7 11.7 35 172-211 43-77 (205)
102 CHL00173 cpeA phycoerythrin al 21.0 3.6E+02 0.0077 24.1 6.5 87 436-541 22-110 (164)
No 1
>KOG0139|consensus
Probab=100.00 E-value=1.4e-64 Score=470.76 Aligned_cols=312 Identities=61% Similarity=1.030 Sum_probs=304.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhHHHhchhcCCccHHHHHHHHHhCC-------------------------------
Q psy5138 214 PFIKQASMAKYFASVAKLAKETIAPYVQKMESEEKIDETVLKTLFESGL------------------------------- 262 (575)
Q Consensus 214 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~------------------------------- 262 (575)
.+++.+.+++ .++++|+.+.+.|.++++|++.++|..+++.+.+.|+
T Consensus 36 ~l~E~e~~l~--~tvrkfa~~~i~Plv~~mD~~~~~~~~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk~d~ 113 (398)
T KOG0139|consen 36 ILSETEQMLQ--KTVRKFAQEEIKPLVREMDRESRYPASVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISKVDA 113 (398)
T ss_pred hcCcHHHHHH--HHHHHHHHHhcchHHHhhhhhccCCHHHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHHhccCc
Confidence 3578888888 9999999999999999999999999999999999997
Q ss_pred --------------------CCHHHHHhcccccCCCceeEEeecCCCCCCccccceeEEEEeCCEEEEeeeeccccCCcc
Q psy5138 263 --------------------GTTEQKEKYLPRLAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 322 (575)
Q Consensus 263 --------------------g~~~~~~~~l~~~~~~~~~~~~~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ 322 (575)
|+++||+.|+|.+.++.+++++++||++|||..+..|+|+++++.|+|||+|.|+||+.+
T Consensus 114 sv~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWItN~~~ 193 (398)
T KOG0139|consen 114 SVGVIVDVQNTLYLPLIIQFGTEEQKEKYLPKLTGDLVGSFALSEPGAGSDAFALKTTAKKDGDDYVINGSKMWITNAGE 193 (398)
T ss_pred cceeEEEecccccchHHHHhCcHHHHhhhcchhhccccceeeecCCCCCcchHHhhhhHhhcCCeEEEecceeeecCCcc
Confidence 999999988888999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEEeCCCCCCCceEEEEEeCCCCCeeecccCccCCCCCccceeEEEcceeeCCCCcccCCCchHHHHHHHHhhh
Q psy5138 323 ANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQG 402 (575)
Q Consensus 323 a~~~~v~a~~~~~~~~~~~~~~lv~~~~~gv~i~~~~~~~G~rg~~s~~l~f~~v~Vp~~~~l~~~~~~~~~~~~~~~~~ 402 (575)
|+|++|++.+++..+.+++++|+||+++||+++....+++|||++.++.|+||||+||.+++||+.+.|+++....++.+
T Consensus 194 A~~~lVfan~d~~~~~Kgit~fiV~rd~~Gl~~~k~eDKLGmRaSsTcql~fedVrVpks~IlGe~G~GykyAm~~Ln~g 273 (398)
T KOG0139|consen 194 ADWFLVFANADPSKGYKGITCFIVPRDTPGLSLGKKEDKLGMRASSTCQLHFEDVRVPKSSILGEYGKGYKYAIEVLNAG 273 (398)
T ss_pred cceEEEEEecChhhccCceeEEEeeCCCCCcccCCccccccccccceeeEEeccccccchhhcccCCcchHHHHHhcCcc
Confidence 99999999998888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q psy5138 403 RIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYF 482 (575)
Q Consensus 403 r~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~~~~~~~~~~~~ak~~ 482 (575)
|+.++++.+|+++.|+|.++.|+++|.+||++|.++|.+|++||++.+++|++|+++|++++.-+.+.|...+++|+|++
T Consensus 274 RIgi~AqmlglaQ~c~d~tI~Y~q~R~~FGk~l~d~Q~iQhqiA~~~teiEaaRlL~ynaAr~k~~G~pf~keAAMAKl~ 353 (398)
T KOG0139|consen 274 RIGIGAQMLGLAQGCFDETIPYAQERLQFGKRLLDFQGLQHQIADMATEIEAARLLVYNAARMKDQGLPFVKEAAMAKLY 353 (398)
T ss_pred ceeehhhhhhhhHhHHHhhhHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhcccccccccccccccccccCCChHHHHhhhhccceeccchHH
Q psy5138 483 ASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSN 559 (575)
Q Consensus 483 ~~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~~~~~~~~~~rd~~~~~~~~G~~~ 559 (575)
+++.+..+...|+++ .||+||+.+.|++++|||++...|++|+++
T Consensus 354 ase~A~~~t~qCiq~--------------------------------lGG~Gyt~d~paek~yRDarI~~IyeGtsn 398 (398)
T KOG0139|consen 354 ASEVATKTTHQCIQW--------------------------------LGGVGYTKDFPAEKFYRDARIGEIYEGTSN 398 (398)
T ss_pred hhhhhhHHHHHHHHH--------------------------------HhcccccccccHHHHhhhceeeeeecCCCC
Confidence 999999999999999 999999999999999999999999999864
No 2
>KOG0140|consensus
Probab=100.00 E-value=5.1e-63 Score=451.88 Aligned_cols=327 Identities=38% Similarity=0.630 Sum_probs=317.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhHHHhchhcCCccHHHHHHHHHhCC-------------------------------
Q psy5138 214 PFIKQASMAKYFASVAKLAKETIAPYVQKMESEEKIDETVLKTLFESGL------------------------------- 262 (575)
Q Consensus 214 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~------------------------------- 262 (575)
.+++++..++ ..+++|..+++-|.+.++|+.+.||++++++-.+.||
T Consensus 27 ~L~e~qke~q--~~A~kFa~~e~~P~aae~Dk~ge~P~~iirkA~~lG~~~~~ip~~~GG~Gls~l~t~lI~E~LayGCt 104 (408)
T KOG0140|consen 27 GLTEDQKEFQ--EAARKFAKDEMIPNAAEYDKSGEFPWEIIRKAHELGFMNTYIPEDYGGLGLSRLDTCLIFEALAYGCT 104 (408)
T ss_pred CcchHHHHHH--HHHHHHHHHhhccchhhhcccCCCcHHHHHHHHHcccCcccCccccCCCCchhHHHHHHHHHHHccch
Confidence 4678888888 9999999999999999999999999999999999998
Q ss_pred -------------------CCHHHHHhcccc-cCCCceeEEeecCCCCCCccccceeEEEEeCCEEEEeeeeccccCCcc
Q psy5138 263 -------------------GTTEQKEKYLPR-LAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 322 (575)
Q Consensus 263 -------------------g~~~~~~~~l~~-~~~~~~~~~~~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ 322 (575)
|+++||++||++ +....+++.++|||++|||+..+.|+|++.+|.|+|||+|.|+||+.+
T Consensus 105 g~~~~I~~~~l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEPgAGSDvagikTka~KkGDeYiiNGsKawItg~G~ 184 (408)
T KOG0140|consen 105 GIQTAISIHNLAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKKGDEYIINGSKAWITGAGH 184 (408)
T ss_pred hHHHHHhccchhhhhehhcCcHHHHHhhhhhhhcchhhhhhhccCCCCCcchhhhhhhhhhcCCEEEEcCceeeeecCCc
Confidence 999999999999 888889999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEEeCCC---CCCCceEEEEEeCCCCCeeecccCccCCCCCccceeEEEcceeeCCCCcccCCCchHHHHHHHH
Q psy5138 323 ANIFLVMANVDVS---KGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFL 399 (575)
Q Consensus 323 a~~~~v~a~~~~~---~~~~~~~~~lv~~~~~gv~i~~~~~~~G~rg~~s~~l~f~~v~Vp~~~~l~~~~~~~~~~~~~~ 399 (575)
|+|++|++|++++ ++.+++..|+|+.++||++.......||.|-+++-.+.|+||+||.+++||.++.||++.+..|
T Consensus 185 anwyfVlaRtd~~pk~p~~Kaft~fiVe~dTpGlt~GkKE~nmGqr~sdTR~itFEDvrVP~~Nvlg~~G~GFkvAm~~f 264 (408)
T KOG0140|consen 185 ANWYFVLARTDPDPKTPAGKAFTAFIVEGDTPGLTRGKKEKNMGQRCSDTRGITFEDVRVPKENVLGAPGAGFKVAMGGF 264 (408)
T ss_pred cceEEEEEecCCCCCCCCCcceEEEEEeCCCCCcCcChhhhcccccCCCCceeeeeecccchhccccCCCccceehhhhc
Confidence 9999999999986 5677899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Q psy5138 400 NQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMA 479 (575)
Q Consensus 400 ~~~r~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~~~~~~~~~~~~a 479 (575)
...|..++++++|+++++++++.+|+.+|++||+||+++|.+|..||+|.+.++.+|++.+++++.+|++.+.....+++
T Consensus 265 d~tRp~vAa~alG~A~r~ld~a~ky~~eRK~FG~~iA~hQ~vqF~LAdMA~~le~aRL~~~~aa~evd~~r~~sy~aSiA 344 (408)
T KOG0140|consen 265 DKTRPNVAAGALGLAQRCLDEATKYALERKAFGTPIANHQAVQFMLADMAINLELARLMTRNAAWEVDNGRRNSYYASIA 344 (408)
T ss_pred cCCCCchhhhhhHHHHHHHHHHHHHHHHHHHhCcChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888899999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhcccccccccccccccccccCCChHHHHhhhhccceeccchHH
Q psy5138 480 KYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSN 559 (575)
Q Consensus 480 k~~~~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~~~~~~~~~~rd~~~~~~~~G~~~ 559 (575)
|.++++.|.++++.++|+ +||.||..|+|+++|+||++..+|+||+++
T Consensus 345 K~fA~D~an~~at~AvQi--------------------------------fGG~Gfn~eYpVeklmRDaki~QIyEGTsq 392 (408)
T KOG0140|consen 345 KLFATDTANQAATNAVQI--------------------------------FGGNGFNKEYPVEKLMRDAKIYQIYEGTSQ 392 (408)
T ss_pred HHHhhhhHHHHHHHHHHh--------------------------------hccCCccccccHHHHHhhhhhhHhhhchHH
Confidence 999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhc
Q psy5138 560 IQLSTIAKYIAKEYT 574 (575)
Q Consensus 560 ~~~~~i~~~~~~~~~ 574 (575)
+||..|+|.++.+|.
T Consensus 393 iqRlvIsR~ll~~~~ 407 (408)
T KOG0140|consen 393 IQRLVISRSLLQKFA 407 (408)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999885
No 3
>KOG0141|consensus
Probab=100.00 E-value=7.9e-60 Score=431.17 Aligned_cols=326 Identities=38% Similarity=0.614 Sum_probs=316.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhHHHhchhcCCcc--HHHHHHHHHhCC-----------------------------
Q psy5138 214 PFIKQASMAKYFASVAKLAKETIAPYVQKMESEEKID--ETVLKTLFESGL----------------------------- 262 (575)
Q Consensus 214 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~d~~~~~~--~~~~~~l~~~G~----------------------------- 262 (575)
.+++++..++ +.+++|+.+++.|++.++|..+.|+ +++|+.|++.|+
T Consensus 40 g~~~e~~~~r--~sv~kF~qeelaP~a~eidk~n~~~~~r~~WkklG~~gllGita~~~~GG~G~~y~~h~ivmEE~sra 117 (421)
T KOG0141|consen 40 GLSDEQDQLR--ESVRKFFQEELAPHASEIDKANEFKDLREFWKKLGKQGLLGITAPEEYGGSGGGYLSHCIVMEEISRA 117 (421)
T ss_pred CCCHHHHHHH--HHHHHHHHHhhcchhhhhhhcCCcchHHHHHHHhhhcCcccccchhhhCCCchhHHHHHHHHHHHHhh
Confidence 3788999999 9999999999999999999999994 799999999997
Q ss_pred ----------------------CCHHHHHhcccc-cCCCceeEEeecCCCCCCccccceeEEEEeCCEEEEeeeeccccC
Q psy5138 263 ----------------------GTTEQKEKYLPR-LAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISN 319 (575)
Q Consensus 263 ----------------------g~~~~~~~~l~~-~~~~~~~~~~~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~ 319 (575)
|+++|+++|||+ ++|+.++++++|||++|||+..+.++|++++++|+|||.|.|+||
T Consensus 118 ~g~v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalAMsEp~AGSDvv~mK~~Aek~g~~yiLNGsK~witN 197 (421)
T KOG0141|consen 118 SGGVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAMSEPGAGSDVVSMKLKAEKKGDDYILNGSKFWITN 197 (421)
T ss_pred cCCcccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceeeecCCCCCCccceeeeeceecCCcEEecCcEEEEec
Confidence 999999999999 999999999999999999999999999999999999999999999
Q ss_pred CccccEEEEEEEeCCC--CCCCceEEEEEeCCCCCeeecccCccCCCCCccceeEEEcceeeCCCCcccCCCchHHHHHH
Q psy5138 320 ADIANIFLVMANVDVS--KGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAG 397 (575)
Q Consensus 320 ~~~a~~~~v~a~~~~~--~~~~~~~~~lv~~~~~gv~i~~~~~~~G~rg~~s~~l~f~~v~Vp~~~~l~~~~~~~~~~~~ 397 (575)
++.||.++|.|+++.. +..+|+++|+|....||++..+..+++||||+++++++|+|++||++++||..+.|+.+++.
T Consensus 198 G~~advliVyAkTd~~a~~~~hGIt~FiVEkgm~GFs~~~KLdKlGmrgsdTcELvFed~~vpas~ilg~enkGvYvlMs 277 (421)
T KOG0141|consen 198 GPDADVLIVYAKTDHSAVPPSHGITAFIVEKGMPGFSTAQKLDKLGMRGSDTCELVFEDCKVPASNILGEENKGVYVLMS 277 (421)
T ss_pred CCCCcEEEEEEecCCCCCCCcCceEEEEEcCCCcccccchhhHhhcCCCCcchheehhhccCcHHHhcCcCCceEEEEec
Confidence 9999999999999876 66789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHH
Q psy5138 398 FLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQAS 477 (575)
Q Consensus 398 ~~~~~r~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~~~~~~~~~~~ 477 (575)
-+...|+.+++..+|+++.++|.+..|+.+|++||++++.+|.+|.++|+|.+.+.+.|+++|.+++..|.+.-+.....
T Consensus 278 gLd~ERLvla~gplglmqa~~d~~~~Y~~qR~afgk~ig~fQ~~QgklAdmyT~l~a~Rsyvy~va~~~d~g~~~~kdca 357 (421)
T KOG0141|consen 278 GLDLERLVLAAGPLGLMQAALDETFPYAHQRKAFGKKIGHFQLLQGKLADMYTTLCASRSYVYNVARACDAGNVDPKDCA 357 (421)
T ss_pred CCChhHhhhccCchHHHHHHHHHhhhHHHHHHHhCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhcccccccccccccccccccCCChHHHHhhhhccceeccch
Q psy5138 478 MAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGT 557 (575)
Q Consensus 478 ~ak~~~~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~~~~~~~~~~rd~~~~~~~~G~ 557 (575)
..++|++|.+.+++-.|+|+ +||-||..|+|..|++||++..+|+.||
T Consensus 358 g~il~aaE~~tqVald~iQ~--------------------------------~GGnGYineyp~gr~lrDAklyeIgaGT 405 (421)
T KOG0141|consen 358 GVILYAAEKATQVALDAIQC--------------------------------LGGNGYINEYPTGRLLRDAKLYEIGAGT 405 (421)
T ss_pred hhhhhHhhhhHHHHHHHHhh--------------------------------ccCcccccccchhhhhhhceeeeccCCh
Confidence 99999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q psy5138 558 SNIQLSTIAKYIAKEY 573 (575)
Q Consensus 558 ~~~~~~~i~~~~~~~~ 573 (575)
++|.+..|+|.+.++|
T Consensus 406 sEirr~lIgRel~~e~ 421 (421)
T KOG0141|consen 406 SEIRRLLIGRELNKEY 421 (421)
T ss_pred HHHHHHHHHHHhhccC
Confidence 9999999999998765
No 4
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.5e-51 Score=422.86 Aligned_cols=325 Identities=26% Similarity=0.423 Sum_probs=302.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHh-hhHHHhchhcCCccHHHHHHHHHhCC-------------------------------
Q psy5138 215 FIKQASMAKYFASVAKLAKETI-APYVQKMESEEKIDETVLKTLFESGL------------------------------- 262 (575)
Q Consensus 215 ~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~~~~~~l~~~G~------------------------------- 262 (575)
+++++.+++ ..+++|+.+++ .+...+.|+.+.||.+.|++|.+.||
T Consensus 5 ~~~~~~~~~--~~~r~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~la~~~~ 82 (380)
T PRK03354 5 LNDEQELFV--AGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLGA 82 (380)
T ss_pred CCHHHHHHH--HHHHHHHHhccCChhHHHHHhhCCCCHHHHHHHHHCCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCc
Confidence 577888888 99999999875 56677889999999999999999998
Q ss_pred ------------------CCHHHHHhcccc-cCCCceeEEeecCCCCCCccccceeEEEEeCCEEEEeeeeccccCCccc
Q psy5138 263 ------------------GTTEQKEKYLPR-LAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIA 323 (575)
Q Consensus 263 ------------------g~~~~~~~~l~~-~~~~~~~~~~~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~a 323 (575)
|+++|+++||++ ++|+.++++++|||..|||...+.|++++++|||+|||+|.|+|++.+|
T Consensus 83 s~~~~~~~~~~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE~~~gs~~~~~~t~a~~~~~g~~lnG~K~fis~~~~a 162 (380)
T PRK03354 83 PTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFITSSAYT 162 (380)
T ss_pred chHHHHHhcccHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCEEEEEEeCCEEEEeeEEEEEcCCCcC
Confidence 889999999999 8898899999999999999999999999999999999999999999999
Q ss_pred cEEEEEEEeCCCCCCCceEEEEEeCCCCCeeecccCccCCCCCccceeEEEcceeeCCCCcccCCCchHHHHHHHHhhhH
Q psy5138 324 NIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGR 403 (575)
Q Consensus 324 ~~~~v~a~~~~~~~~~~~~~~lv~~~~~gv~i~~~~~~~G~rg~~s~~l~f~~v~Vp~~~~l~~~~~~~~~~~~~~~~~r 403 (575)
||++|.++++.+++..++.+|+||++.|||++. +|+++|||+++++++.||||+||+++++|.++.|+......+...|
T Consensus 163 d~~~v~a~~~~~~~~~~~~~~lv~~~~~gv~~~-~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~~~~~~~r 241 (380)
T PRK03354 163 PYIVVMARDGASPDKPVYTEWFVDMSKPGIKVT-KLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHER 241 (380)
T ss_pred CEEEEEEEcCCCCCCCceeEEEEECCCCceEec-cccccCCCCCCeEEEEEccEEecHHHcCCCCChHHHHHHHHHHHHH
Confidence 999999997544444567889999999999985 7999999999999999999999999999998888877777788889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q psy5138 404 IGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFA 483 (575)
Q Consensus 404 ~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~~~~~~~~~~~~ak~~~ 483 (575)
+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++++++..+.+.+......++|+++
T Consensus 242 ~~~aa~~~G~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~~~~~~~~~~aK~~~ 321 (380)
T PRK03354 242 FLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFC 321 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887765667889999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhcccccccccccccccccccCCChHHHHhhhhccceeccchHHHHHH
Q psy5138 484 SEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNIQLS 563 (575)
Q Consensus 484 ~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~~~~~~~~~~rd~~~~~~~~G~~~~~~~ 563 (575)
++.+.++++.++++ +||.||+++++++++|||++...+++|++++++.
T Consensus 322 ~~~a~~~~~~~~~~--------------------------------~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~ 369 (380)
T PRK03354 322 ANAAFEVVDSAMQV--------------------------------LGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQIL 369 (380)
T ss_pred HHHHHHHHHHHHHH--------------------------------hcCceecCCChHHHHHHHhhhhhccCCHHHHHHH
Confidence 99999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHhhhc
Q psy5138 564 TIAKYIAKEYT 574 (575)
Q Consensus 564 ~i~~~~~~~~~ 574 (575)
.|++.+++.|+
T Consensus 370 ~i~~~~~~~~~ 380 (380)
T PRK03354 370 TLGRAVLKQYR 380 (380)
T ss_pred HHHHHHHhhcC
Confidence 99999999885
No 5
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=3.8e-51 Score=421.97 Aligned_cols=325 Identities=27% Similarity=0.427 Sum_probs=301.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHhh-hHHHhchhcCCccHHHHHHHHHhCC-------------------------------
Q psy5138 215 FIKQASMAKYFASVAKLAKETIA-PYVQKMESEEKIDETVLKTLFESGL------------------------------- 262 (575)
Q Consensus 215 ~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~d~~~~~~~~~~~~l~~~G~------------------------------- 262 (575)
+++++.++. ..++.|+.+.+. +.+.++|+.+.||+++|++|.+.||
T Consensus 5 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~ 82 (381)
T PRK12341 5 LTEEQELLL--ASIRELITRNFPEEYFRTCDENGTYPREFMRALADNGISMLGVPEEFGGTPADYVTQMLVLEEVSKCGA 82 (381)
T ss_pred CCHHHHHHH--HHHHHHHHHhcCchhHHHHHHhCCCCHHHHHHHHHCCCCCcCCChhhCCCCcCHHHHHHHHHHHhhcCh
Confidence 456777777 889999999885 5778889999999999999999997
Q ss_pred -----------------CCHHHHHhcccc-c-CCCceeEEeecCCCCCCccccceeEEEEeCCEEEEeeeeccccCCccc
Q psy5138 263 -----------------GTTEQKEKYLPR-L-AQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIA 323 (575)
Q Consensus 263 -----------------g~~~~~~~~l~~-~-~~~~~~~~~~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~a 323 (575)
|+++|+++|+++ . .|+.++++++|||+.|||...+.+++++++|||+|||+|.|+||+.+|
T Consensus 83 ~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~gg~~lnG~K~~is~~~~A 162 (381)
T PRK12341 83 PAFLITNGQCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKTFITGAKEY 162 (381)
T ss_pred hHHHHhhhhhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEEEecCCCCCCchhhCeeEEEEeCCEEEEEeEEEEEcCCccC
Confidence 899999999998 4 777789999999999999999999999999999999999999999999
Q ss_pred cEEEEEEEeCCCC-CCCceEEEEEeCCCCCeeecccCccCCCCCccceeEEEcceeeCCCCcccCCCchHHHHHHHHhhh
Q psy5138 324 NIFLVMANVDVSK-GYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQG 402 (575)
Q Consensus 324 ~~~~v~a~~~~~~-~~~~~~~~lv~~~~~gv~i~~~~~~~G~rg~~s~~l~f~~v~Vp~~~~l~~~~~~~~~~~~~~~~~ 402 (575)
|+++|.+++++++ +..++.+|+||++.|||++ .+|+++|+++++++++.|+||+||++++||.++.|+......+...
T Consensus 163 d~~~v~a~~~~~~~~~~~~~~~lV~~~~~gv~~-~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~ 241 (381)
T PRK12341 163 PYMLVLARDPQPKDPKKAFTLWWVDSSKPGIKI-NPLHKIGWHMLSTCEVYLDNVEVEESDLVGEEGMGFLNVMYNFEME 241 (381)
T ss_pred CEEEEEEEcCCCCCCCCceEEEEEeCCCCceee-cccccccCCCCCceEEEECcEEecHHHcCCCCChHHHHHHHHHHhH
Confidence 9999999986543 2346889999999999999 5799999999999999999999999999999999988877888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q psy5138 403 RIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYF 482 (575)
Q Consensus 403 r~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~~~~~~~~~~~~ak~~ 482 (575)
|+.+++.++|+++++++.+++|+++|++||+|+.++|.+|++|++|.++++++|++++++++..+++.+.....+++|++
T Consensus 242 r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~~i~~~~~v~~~la~~~~~~~aar~~~~~a~~~~d~~~~~~~~~~~aK~~ 321 (381)
T PRK12341 242 RLINAARSLGFAECAFEDAARYANQRIQFGKPIGHNQLIQEKLTLMAIKIENMRNMVYKVAWQADNGQSLRTSAALAKLY 321 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998877666788999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhcccccccccccccccccccCCChHHHHhhhhccceeccchHHHHH
Q psy5138 483 ASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNIQL 562 (575)
Q Consensus 483 ~~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~~~~~~~~~~rd~~~~~~~~G~~~~~~ 562 (575)
+++.+.++++.++++ +||.||..++++++++||++...+++|++++++
T Consensus 322 ~~~~a~~v~~~~~~~--------------------------------~Gg~g~~~~~~l~r~~RD~~~~~~~~g~~~~~~ 369 (381)
T PRK12341 322 CARTAMEVIDDAIQI--------------------------------MGGLGYTDEARVSRFWRDVRCERIGGGTDEIMI 369 (381)
T ss_pred HHHHHHHHHHHHHHH--------------------------------hcCcccCCCCHHHHHHHHhhcceecCCHHHHHH
Confidence 999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhc
Q psy5138 563 STIAKYIAKEYT 574 (575)
Q Consensus 563 ~~i~~~~~~~~~ 574 (575)
..|++.+++.|+
T Consensus 370 ~~i~~~~~~~~~ 381 (381)
T PRK12341 370 YIAGRQILKDYQ 381 (381)
T ss_pred HHHHHHHHhhcC
Confidence 999999987663
No 6
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=100.00 E-value=6.1e-51 Score=420.73 Aligned_cols=323 Identities=38% Similarity=0.602 Sum_probs=301.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHhchhcCCccHHHHHHHHHhCC---------------------------------
Q psy5138 216 IKQASMAKYFASVAKLAKETIAPYVQKMESEEKIDETVLKTLFESGL--------------------------------- 262 (575)
Q Consensus 216 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~--------------------------------- 262 (575)
++++.++. +.+++|+.+.+.+.+.+.|+.+.||.++|++|.+.||
T Consensus 2 ~~~~~~l~--~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~~~ 79 (378)
T cd01157 2 TEQQKEFQ--ETARKFAREEIIPVAAEYDKSGEYPWPLIKRAWELGLMNTHIPEDCGGLGLGTFDTCLITEELAYGCTGV 79 (378)
T ss_pred CHHHHHHH--HHHHHHHHHhcccchHHHHhhCCCCHHHHHHHHhCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhhhHH
Confidence 45666777 8999999999998888899999999999999999998
Q ss_pred -----------------CCHHHHHhcccc-cCCCceeEEeecCCCCCCccccceeEEEEeCCEEEEeeeeccccCCcccc
Q psy5138 263 -----------------GTTEQKEKYLPR-LAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIAN 324 (575)
Q Consensus 263 -----------------g~~~~~~~~l~~-~~~~~~~~~~~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~ 324 (575)
|+++|+++||++ ++|+.++++++|||..|||...+.+++++++|||+|||+|.|+|++.+||
T Consensus 80 ~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad 159 (378)
T cd01157 80 QTAIEANSLGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKAN 159 (378)
T ss_pred HHHHHhhhhhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhcCeEEEEEcCCEEEEeeEEEeecCCccCC
Confidence 788999999999 78888899999999999999889999999999999999999999999999
Q ss_pred EEEEEEEeCCCCC---CCceEEEEEeCCCCCeeecccCccCCCCCccceeEEEcceeeCCCCcccCCCchHHHHHHHHhh
Q psy5138 325 IFLVMANVDVSKG---YRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQ 401 (575)
Q Consensus 325 ~~~v~a~~~~~~~---~~~~~~~lv~~~~~gv~i~~~~~~~G~rg~~s~~l~f~~v~Vp~~~~l~~~~~~~~~~~~~~~~ 401 (575)
|++|.++++++++ ..++.+|+||++.|||++.+.|+++|+++++++++.|+||+||++++|+.++.|+......+..
T Consensus 160 ~~lv~a~~~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~s~~~~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~ 239 (378)
T cd01157 160 WYFLLARSDPDPKCPASKAFTGFIVEADTPGIQPGRKELNMGQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAMGAFDK 239 (378)
T ss_pred EEEEEEEeCCcccCCCCCceEEEEEcCCCCCeeccCcccccCCCCCCceEEEeccEEECHHHcCCCCCchHHHHHHHHhh
Confidence 9999999864321 3468899999999999999999999999999999999999999999999888999888888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q psy5138 402 GRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKY 481 (575)
Q Consensus 402 ~r~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~~~~~~~~~~~~ak~ 481 (575)
.|+.+++.++|+++++++.+++|+++|++||+||.++|.+|++|++|.++++++|++++++++.++.+.......+++|+
T Consensus 240 ~r~~~aa~~lG~a~~~l~~~~~~~~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~aK~ 319 (378)
T cd01157 240 TRPPVAAGAVGLAQRALDEATKYALERKTFGKLIAEHQAVSFMLADMAMKVELARLAYQRAAWEVDSGRRNTYYASIAKA 319 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccccCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998877555567889999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhcccccccccccccccccccCCChHHHHhhhhccceeccchHHHH
Q psy5138 482 FASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNIQ 561 (575)
Q Consensus 482 ~~~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~~~~~~~~~~rd~~~~~~~~G~~~~~ 561 (575)
++++.+.++++.++++ +||.||+.+++++++|||++...+++|+++++
T Consensus 320 ~~~~~a~~~~~~a~~~--------------------------------~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~ 367 (378)
T cd01157 320 FAADIANQLATDAVQI--------------------------------FGGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQ 367 (378)
T ss_pred HHHHHHHHHHHHHHHH--------------------------------hCCCccCCCCHHHHHHHHHhhceecCCHHHHH
Confidence 9999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q psy5138 562 LSTIAKYIAKE 572 (575)
Q Consensus 562 ~~~i~~~~~~~ 572 (575)
+..|++.++++
T Consensus 368 ~~~i~~~~~~~ 378 (378)
T cd01157 368 RLIISREHLGK 378 (378)
T ss_pred HHHHHHHHhcC
Confidence 99999998764
No 7
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=100.00 E-value=1.2e-50 Score=420.63 Aligned_cols=325 Identities=38% Similarity=0.601 Sum_probs=304.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhHHHhchhcCCccHH--HHHHHHHhCC-----------------------------
Q psy5138 214 PFIKQASMAKYFASVAKLAKETIAPYVQKMESEEKIDET--VLKTLFESGL----------------------------- 262 (575)
Q Consensus 214 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~--~~~~l~~~G~----------------------------- 262 (575)
.+++++..+. ..+++|+.+++.+.+.+.|+.+.+|.+ .|++|.+.||
T Consensus 25 ~~~~~~~~~~--~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~~~l~~~G~~~~~vP~e~GG~g~~~~~~~~v~e~la~~ 102 (404)
T PLN02519 25 LFDDTQLQFK--ESVQQFAQENIAPHAAAIDATNSFPKDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISRA 102 (404)
T ss_pred CCCHHHHHHH--HHHHHHHHHhCCcchHHHHhcCCCCchHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHhhh
Confidence 3577777777 899999999999988889999999976 6999999998
Q ss_pred ----------------------CCHHHHHhcccc-cCCCceeEEeecCCCCCCccccceeEEEEeCCEEEEeeeeccccC
Q psy5138 263 ----------------------GTTEQKEKYLPR-LAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISN 319 (575)
Q Consensus 263 ----------------------g~~~~~~~~l~~-~~~~~~~~~~~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~ 319 (575)
|+++|+++|+++ +.|+.++++++|||..|+|...+.+++++++|||+|||+|.|+|+
T Consensus 103 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sEp~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~ 182 (404)
T PLN02519 103 SGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCTN 182 (404)
T ss_pred cccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCcCCCcccceEEEEEeCCEEEEEeEEEeecC
Confidence 889999999999 889999999999999999998999999999999999999999999
Q ss_pred CccccEEEEEEEeCCCCCCCceEEEEEeCCCCCeeecccCccCCCCCccceeEEEcceeeCCCCcccCCCchHHHHHHHH
Q psy5138 320 ADIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFL 399 (575)
Q Consensus 320 ~~~a~~~~v~a~~~~~~~~~~~~~~lv~~~~~gv~i~~~~~~~G~rg~~s~~l~f~~v~Vp~~~~l~~~~~~~~~~~~~~ 399 (575)
+.+||+++|.+++++++++.++.+|+||++.|||++.+.|+++||++++++++.|+||+||++++++..+.|+......+
T Consensus 183 a~~ad~~~v~a~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~G~rgt~s~~v~f~~v~Vp~~~~lg~~~~G~~~~~~~~ 262 (404)
T PLN02519 183 GPVAQTLVVYAKTDVAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQEGKGVYVMMSGL 262 (404)
T ss_pred CCcCCEEEEEEEeCCCCCCCeeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEeCeEEecHHHcCCCCCccHHHHHHHH
Confidence 99999999999987554556789999999999999999999999999999999999999999999999888988777888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Q psy5138 400 NQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMA 479 (575)
Q Consensus 400 ~~~r~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~~~~~~~~~~~~a 479 (575)
...|+.+++.++|+++++++.+++|+++|.+||+|+.++|.+|+++++|.++++++|++++++++.++.+.....+...+
T Consensus 263 ~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~pl~~~~~v~~~la~~~~~l~aar~~~~~aa~~~~~~~~~~~~~~~a 342 (404)
T PLN02519 263 DLERLVLAAGPLGLMQACLDVVLPYVRQREQFGRPIGEFQFIQGKLADMYTSLQSSRSYVYSVARDCDNGKVDRKDCAGV 342 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999998876666778889
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhcccccccccccccccccccCCChHHHHhhhhccceeccchHH
Q psy5138 480 KYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSN 559 (575)
Q Consensus 480 k~~~~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~~~~~~~~~~rd~~~~~~~~G~~~ 559 (575)
|+++++.+.++++.++++ |||.||+.+++++++|||++...+++|+++
T Consensus 343 k~~~~~~a~~~~~~a~~i--------------------------------~Gg~g~~~~~~l~r~~RD~~~~~~~~G~~e 390 (404)
T PLN02519 343 ILCAAERATQVALQAIQC--------------------------------LGGNGYINEYPTGRLLRDAKLYEIGAGTSE 390 (404)
T ss_pred HHHHHHHHHHHHHHHHHH--------------------------------hCCceecCCChHHHHHHhhhcceeeCCHHH
Confidence 999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q psy5138 560 IQLSTIAKYIAKE 572 (575)
Q Consensus 560 ~~~~~i~~~~~~~ 572 (575)
+++..|++.++++
T Consensus 391 ~~~~~i~~~~~~~ 403 (404)
T PLN02519 391 IRRMLIGRELFKE 403 (404)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999999875
No 8
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=100.00 E-value=1.2e-50 Score=417.29 Aligned_cols=317 Identities=31% Similarity=0.486 Sum_probs=295.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHhchhcCCccHHHHHHHHHhCC---------------------------------
Q psy5138 216 IKQASMAKYFASVAKLAKETIAPYVQKMESEEKIDETVLKTLFESGL--------------------------------- 262 (575)
Q Consensus 216 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~--------------------------------- 262 (575)
++++.++. +.+++|+.+.+.+...+.|+.+.+|+++|++|.+.||
T Consensus 2 t~~~~~l~--~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~ 79 (372)
T TIGR03207 2 NEDLQALA--DTARRFARERIAPGFKERDKTRVLDRELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQIARADLSM 79 (372)
T ss_pred CHHHHHHH--HHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHHCCCCcccCChhHCCCCCCHHHHHHHHHHHHhhCccH
Confidence 45666677 8999999999999888889889999999999999997
Q ss_pred -----------------CCHHHHHhcccc-cCCCceeEEeecCCCCCCccccceeEEEEeCCEEEEeeeeccccCCcccc
Q psy5138 263 -----------------GTTEQKEKYLPR-LAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIAN 324 (575)
Q Consensus 263 -----------------g~~~~~~~~l~~-~~~~~~~~~~~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~ 324 (575)
|+++|+++||++ ++|+.++++++|||..|||...+.++++++++||+|||+|.|+|++.+||
T Consensus 80 ~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~k~~vs~~~~ad 159 (372)
T TIGR03207 80 SYVNLLASLNGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISAADQAD 159 (372)
T ss_pred HHHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCcChhhCEEEEEEeCCEEEEEEEEEEEcCCCcCC
Confidence 689999999999 88988999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCC-CCCCceEEEEEeCCCCCeeecccCccCCCCCccceeEEEcceeeCCCCcccCCCchHHHHHHHHhhhH
Q psy5138 325 IFLVMANVDVS-KGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGR 403 (575)
Q Consensus 325 ~~~v~a~~~~~-~~~~~~~~~lv~~~~~gv~i~~~~~~~G~rg~~s~~l~f~~v~Vp~~~~l~~~~~~~~~~~~~~~~~r 403 (575)
|++|+++++++ ++..++.+|+||++.|||++ .+|+++|+++++++++.|+||+||++++++.++.|+......++..|
T Consensus 160 ~~lv~a~~~~~~~~~~~~~~~lVp~~~~gv~~-~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r 238 (372)
T TIGR03207 160 AAVVFARTGSEAEGARGISAFLVPMDLPGITR-NRFDCHGQRAIGRGSIFFENVRVPADHMLGNEGQGFVQVMQGFDFSR 238 (372)
T ss_pred EEEEEEEcCCCCCCCCceEEEEEcCCCCCeec-CcchhccCCCCCeeEEEECceeccHHHcCCCCChhHHHHHHHHHHHH
Confidence 99999998643 23456889999999999997 57999999999999999999999999999998899988888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q psy5138 404 IGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFA 483 (575)
Q Consensus 404 ~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~~~~~~~~~~~~ak~~~ 483 (575)
+.+++.++|+++++++.+++|+++|++||+|+.++|.+|+++++|.++++++|++++++++.++.+.+.....+++|+++
T Consensus 239 ~~~a~~~~G~a~~al~~a~~~~~~R~~fg~~i~~~q~v~~~la~~~~~~~~ar~l~~~aa~~~~~~~~~~~~~~~aK~~~ 318 (372)
T TIGR03207 239 ALIGLQVLAVARAALDETWRYVAERQAFGKPLSAFQGVSHPLADAETQVEAARLLCLQTLWLKDHGLPHTSEAAMCKWWA 318 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988765566788999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhcccccccccccccccccccCCChHHHHhhhhccceeccchHHHHHH
Q psy5138 484 SEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNIQLS 563 (575)
Q Consensus 484 ~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~~~~~~~~~~rd~~~~~~~~G~~~~~~~ 563 (575)
++.+.++++.++++ |||.||+.+ +++|+|||++...+++|++++++.
T Consensus 319 ~~~a~~v~~~a~~v--------------------------------~Gg~g~~~~-~l~r~~rd~~~~~i~~Gt~~~~~~ 365 (372)
T TIGR03207 319 PKLAYDVIHQCLLT--------------------------------HGHGGYDRG-DMEQRLRDVLGFQIGDGTAQIMKT 365 (372)
T ss_pred HHHHHHHHHHHHHH--------------------------------hcCCcCCCc-hHHHHHhHhhheeecCCHHHHHHH
Confidence 99999999999999 999999999 999999999999999999999999
Q ss_pred HHHHH
Q psy5138 564 TIAKY 568 (575)
Q Consensus 564 ~i~~~ 568 (575)
.|++.
T Consensus 366 ~i~~~ 370 (372)
T TIGR03207 366 IIARH 370 (372)
T ss_pred HHhhc
Confidence 99874
No 9
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=100.00 E-value=1.5e-50 Score=417.13 Aligned_cols=318 Identities=37% Similarity=0.620 Sum_probs=298.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhchhcCCccHHHHHHHHHhCC-----------------------------------
Q psy5138 218 QASMAKYFASVAKLAKETIAPYVQKMESEEKIDETVLKTLFESGL----------------------------------- 262 (575)
Q Consensus 218 ~~~~~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~----------------------------------- 262 (575)
++.+++ +.+++|+.+.+.+.+.++|+++.+|+++|++|.+.||
T Consensus 2 ~~~~l~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~ 79 (372)
T cd01160 2 EHDAFR--DVVRRFFAKEVAPFHHEWEKAGEVPREVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELARAGGSGPG 79 (372)
T ss_pred hHHHHH--HHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHhcchHHH
Confidence 345666 8899999999998888899999999999999999998
Q ss_pred ---------------CCHHHHHhcccc-cCCCceeEEeecCCCCCCccccceeEEEEeCCEEEEeeeeccccCCccccEE
Q psy5138 263 ---------------GTTEQKEKYLPR-LAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIF 326 (575)
Q Consensus 263 ---------------g~~~~~~~~l~~-~~~~~~~~~~~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~ 326 (575)
|+++|+++|+++ ++|+.++++++|||..|||...+.++++++++||+|||+|.|+||+.+||++
T Consensus 80 ~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~Ad~~ 159 (372)
T cd01160 80 LSLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLADVV 159 (372)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCeEEEEEeCCEEEEeeEEEEecCCCccCEE
Confidence 788999999999 8899999999999999999988999999999999999999999999999999
Q ss_pred EEEEEeCCC-CCCCceEEEEEeCCCCCeeecccCccCCCCCccceeEEEcceeeCCCCcccCCCchHHHHHHHHhhhHHH
Q psy5138 327 LVMANVDVS-KGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIG 405 (575)
Q Consensus 327 ~v~a~~~~~-~~~~~~~~~lv~~~~~gv~i~~~~~~~G~rg~~s~~l~f~~v~Vp~~~~l~~~~~~~~~~~~~~~~~r~~ 405 (575)
+|.++++++ +++.++.+|+||++.||+++.++|+++||++++++++.|+||+||++++|+.++.|+......+...|+.
T Consensus 160 ~v~a~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~~~~ 239 (372)
T cd01160 160 IVVARTGGEARGAGGISLFLVERGTPGFSRGRKLKKMGWKAQDTAELFFDDCRVPAENLLGEENKGFYYLMQNLPQERLL 239 (372)
T ss_pred EEEEEeCCCCCCCCceEEEEEeCCCCCeecCCccccccCCCCCeEEEEecceEccHHHcCCCCCchHHHHHHHHHHHHHH
Confidence 999998754 3345789999999999999999999999999999999999999999999999999998888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q psy5138 406 IAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASE 485 (575)
Q Consensus 406 ~~a~~~G~~~~al~~~~~~~~~r~~~g~~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~~~~~~~~~~~~ak~~~~~ 485 (575)
+++.++|+++++++.+++|+++|++||+|+.++|.+|++|++|.+++++++++++.+++..+.+......++++|+++++
T Consensus 240 ~aa~~lG~a~~al~~a~~~a~~R~~~g~~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~~~~~~~~~~~~~aK~~~~~ 319 (372)
T cd01160 240 IAAGALAAAEFMLEETRNYVKQRKAFGKTLAQLQVVRHKIAELATKVAVTRAFLDNCAWRHEQGRLDVAEASMAKYWATE 319 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988776666788999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhcccccccccccccccccccCCChHHHHhhhhccceeccchHHHHHHHH
Q psy5138 486 MAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNIQLSTI 565 (575)
Q Consensus 486 ~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~~~~~~~~~~rd~~~~~~~~G~~~~~~~~i 565 (575)
.+.++++.++++ |||.||+.+++++++|||++...+++|++++++.+|
T Consensus 320 ~a~~v~~~a~~~--------------------------------~Gg~g~~~~~~l~r~~Rd~~~~~~~~gt~~~~~~~i 367 (372)
T cd01160 320 LQNRVAYECVQL--------------------------------HGGWGYMREYPIARAYRDARVQPIYGGTTEIMKELI 367 (372)
T ss_pred HHHHHHHHHHHH--------------------------------hcCceecCCCHHHHHHHHhhcccccCCHHHHHHHHH
Confidence 999999999999 999999999999999999999999999999999999
Q ss_pred HHHH
Q psy5138 566 AKYI 569 (575)
Q Consensus 566 ~~~~ 569 (575)
++.+
T Consensus 368 ~~~~ 371 (372)
T cd01160 368 SRQM 371 (372)
T ss_pred HHhh
Confidence 9875
No 10
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=100.00 E-value=2.4e-50 Score=416.70 Aligned_cols=320 Identities=35% Similarity=0.537 Sum_probs=300.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhHHHhchhcCCccHHHHHHHHHhCC--------------------------------
Q psy5138 215 FIKQASMAKYFASVAKLAKETIAPYVQKMESEEKIDETVLKTLFESGL-------------------------------- 262 (575)
Q Consensus 215 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~-------------------------------- 262 (575)
+++++.++. +.+++|+.+++.+...+.|+.+.+|++++++|.+.||
T Consensus 13 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~s~ 90 (386)
T cd01151 13 LTEEERAIR--DTAREFCQEELAPRVLEAYREEKFDRKIIEEMGELGLLGATIKGYGCAGLSSVAYGLIAREVERVDSGY 90 (386)
T ss_pred CCHHHHHHH--HHHHHHHHHhcCccHHHHHHhCCCCHHHHHHHHHCCCCccCccccCCCCCCHHHHHHHHHHHHhhChhH
Confidence 567777787 8999999999999888888888999999999999997
Q ss_pred ------------------CCHHHHHhcccc-cCCCceeEEeecCCCCCCccccceeEEEEeCCEEEEeeeeccccCCccc
Q psy5138 263 ------------------GTTEQKEKYLPR-LAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIA 323 (575)
Q Consensus 263 ------------------g~~~~~~~~l~~-~~~~~~~~~~~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~a 323 (575)
|+++|+++|+++ ++|+.++++++|||+.|||...+.++|++++|||+|||+|.|+|++..|
T Consensus 91 ~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~~~~A 170 (386)
T cd01151 91 RSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWITNSPIA 170 (386)
T ss_pred HHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeEEEEEECCEEEEEEEEEeecCCCcC
Confidence 899999999999 8899999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEEeCCCCCCCceEEEEEeCCCCCeeecccCccCCCCCccceeEEEcceeeCCCCcccCCCchHHHHHHHHhhhH
Q psy5138 324 NIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGR 403 (575)
Q Consensus 324 ~~~~v~a~~~~~~~~~~~~~~lv~~~~~gv~i~~~~~~~G~rg~~s~~l~f~~v~Vp~~~~l~~~~~~~~~~~~~~~~~r 403 (575)
||++|.++++++ .++.+|+||++.|||++.+.|+++||++++++++.|+||+||++++++. ++++......+...|
T Consensus 171 d~~lv~ar~~~~---~~~~~flVp~~~~gv~i~~~~~~~G~~g~~s~~v~f~~v~Vp~~~~l~~-~~g~~~~~~~~~~~r 246 (386)
T cd01151 171 DVFVVWARNDET---GKIRGFILERGMKGLSAPKIQGKFSLRASITGEIVMDNVFVPEENLLPG-AEGLRGPFKCLNNAR 246 (386)
T ss_pred CEEEEEEEECCC---CcEEEEEEcCCCCCeecCCCCCCcCCCCCceeEEEEccEEeCHHHcCCc-cccHHHHHHHHHHHH
Confidence 999999998642 3578999999999999999999999999999999999999999999986 468877777888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q psy5138 404 IGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFA 483 (575)
Q Consensus 404 ~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~~~~~~~~~~~~ak~~~ 483 (575)
+.+++.++|+++++++.+++|+++|++||+|++++|.+|++|++|.++++++|++++++++.++.+.+...+.+++|.++
T Consensus 247 ~~~aa~~lG~a~~al~~a~~~a~~R~~~g~~i~~~q~vq~~la~~~~~~eaar~l~~~a~~~~d~~~~~~~~~~~~K~~~ 326 (386)
T cd01151 247 YGIAWGALGAAEDCYHTARQYVLDRKQFGRPLAAFQLVQKKLADMLTEIALGLLACLRVGRLKDQGKATPEQISLLKRNN 326 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCeecCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998766667889999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhcccccccccccccccccccCCChHHHHhhhhccceeccchHHHHHH
Q psy5138 484 SEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNIQLS 563 (575)
Q Consensus 484 ~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~~~~~~~~~~rd~~~~~~~~G~~~~~~~ 563 (575)
++.+.++++.++++ |||.||..+++++++|||++...+++|++++++.
T Consensus 327 ~~~a~~~~~~a~~~--------------------------------~Gg~g~~~~~~l~r~~RD~~~~~~~~G~~~~~~~ 374 (386)
T cd01151 327 CGKALEIARTAREM--------------------------------LGGNGISDEYHIIRHMVNLESVNTYEGTHDIHAL 374 (386)
T ss_pred HHHHHHHHHHHHHH--------------------------------hcCCccCCCCHHHHHHHhhhcceecCCHHHHHHH
Confidence 99999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q psy5138 564 TIAKYIAKE 572 (575)
Q Consensus 564 ~i~~~~~~~ 572 (575)
.|++.+++.
T Consensus 375 ~i~~~~l~~ 383 (386)
T cd01151 375 ILGRAITGI 383 (386)
T ss_pred HHHHHHhcc
Confidence 999998864
No 11
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=100.00 E-value=1.9e-50 Score=416.16 Aligned_cols=322 Identities=38% Similarity=0.637 Sum_probs=301.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHhchhcCCccHHHHHHHHHhCC---------------------------------
Q psy5138 216 IKQASMAKYFASVAKLAKETIAPYVQKMESEEKIDETVLKTLFESGL--------------------------------- 262 (575)
Q Consensus 216 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~--------------------------------- 262 (575)
++++.++. ..+++|+.+.+.+.+.+.|..+.+|++.|+.|.+.||
T Consensus 2 ~~~~~~l~--~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l~~~~~~~ 79 (375)
T cd01162 2 NEEQRAIQ--EVARAFAAKEMAPHAADWDQKKHFPVDVLRKAAELGFGGIYIRDDVGGSGLSRLDASIIFEALSTGCVST 79 (375)
T ss_pred CHHHHHHH--HHHHHHHHHhCCcchhhHHhhCCCCHHHHHHHHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHHHhhchhH
Confidence 45666677 8899999999999888899999999999999999997
Q ss_pred -----------------CCHHHHHhcccc-cCCCceeEEeecCCCCCCccccceeEEEEeCCEEEEeeeeccccCCcccc
Q psy5138 263 -----------------GTTEQKEKYLPR-LAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIAN 324 (575)
Q Consensus 263 -----------------g~~~~~~~~l~~-~~~~~~~~~~~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~ 324 (575)
|+++|+++|+++ ++++.++++++|||..|||...+.++++++++||+|||+|.|+|++.+||
T Consensus 80 ~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad 159 (375)
T cd01162 80 AAYISIHNMCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGDSD 159 (375)
T ss_pred HHHHHHhhhHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCCCChhhCEEEEEEeCCEEEEEEEEEEecCCCCCC
Confidence 789999999999 88988999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCCCCCCceEEEEEeCCCCCeeecccCccCCCCCccceeEEEcceeeCCCCcccCCCchHHHHHHHHhhhHH
Q psy5138 325 IFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRI 404 (575)
Q Consensus 325 ~~~v~a~~~~~~~~~~~~~~lv~~~~~gv~i~~~~~~~G~rg~~s~~l~f~~v~Vp~~~~l~~~~~~~~~~~~~~~~~r~ 404 (575)
+++|.++++++ +..++.+|+||++.|||++.++|+++|+++++++++.||||+||++++|+.+++|+......+...|+
T Consensus 160 ~~~v~a~~~~~-~~~~~~~~lv~~~~~gv~v~~~~~~~g~~~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~ 238 (375)
T cd01162 160 VYVVMARTGGE-GPKGISCFVVEKGTPGLSFGANEKKMGWNAQPTRAVIFEDCRVPVENRLGGEGQGFGIAMAGLNGGRL 238 (375)
T ss_pred EEEEEEEecCC-CCCceEEEEEeCCCCCeecCCcccccCCCCCCeeEEEECceEecHHHcCCCCCchHHHHHHHHHHHHH
Confidence 99999997643 34568899999999999999999999999999999999999999999999999999888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHH
Q psy5138 405 GIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQP-FIKQASMAKYFA 483 (575)
Q Consensus 405 ~~~a~~~G~~~~al~~~~~~~~~r~~~g~~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~~~~~-~~~~~~~ak~~~ 483 (575)
.+++.++|+++++++.+++|+++|++||+||.++|.+|+++++|.+++++++++++.+++.++.+.+ .....+++|+++
T Consensus 239 ~~aa~~lG~a~~al~~~~~~a~~R~~fg~~l~~~~~vq~~la~~~~~l~~a~~~~~~a~~~~~~~~~~~~~~~~~ak~~~ 318 (375)
T cd01162 239 NIASCSLGAAQAALDLARAYLEERKQFGKPLADFQALQFKLADMATELVASRLMVRRAASALDRGDPDAVKLCAMAKRFA 318 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999988753 345678899999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhcccccccccccccccccccCCChHHHHhhhhccceeccchHHHHHH
Q psy5138 484 SEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNIQLS 563 (575)
Q Consensus 484 ~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~~~~~~~~~~rd~~~~~~~~G~~~~~~~ 563 (575)
++.+.++++.++++ |||.||..++++++++||++...+++|++++++.
T Consensus 319 ~~~a~~~~~~~~~~--------------------------------~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~ 366 (375)
T cd01162 319 TDECFDVANQALQL--------------------------------HGGYGYLKDYPVEQYVRDLRVHQILEGTNEIMRL 366 (375)
T ss_pred HHHHHHHHHHHHHH--------------------------------hcccccccCChHHHHHHHhhcceeecCHHHHHHH
Confidence 99999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q psy5138 564 TIAKYIAKE 572 (575)
Q Consensus 564 ~i~~~~~~~ 572 (575)
.|++.++++
T Consensus 367 ~~~~~~~~~ 375 (375)
T cd01162 367 IIARALLTR 375 (375)
T ss_pred HHHHHHhcC
Confidence 999998864
No 12
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=1.2e-50 Score=415.85 Aligned_cols=317 Identities=23% Similarity=0.329 Sum_probs=290.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhHHH--hchhcCCccHHHHHHHHHhCC------------------------------
Q psy5138 215 FIKQASMAKYFASVAKLAKETIAPYVQ--KMESEEKIDETVLKTLFESGL------------------------------ 262 (575)
Q Consensus 215 ~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~d~~~~~~~~~~~~l~~~G~------------------------------ 262 (575)
+++++.+++ ..+++|+.+.+.+... ..|+.+.||.++|++|.+.||
T Consensus 4 ~~~eq~~l~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~e~G~~~l~vPe~~GG~G~~~~~~~~v~eel~~~~ 81 (378)
T TIGR03203 4 LSEEQRLLK--ESVEGLLKTSYDFDSRKKYQKEKGGWSKAVWGKLAEQGLLGLPFSEADGGFGAGSVETMIVMEALGKAL 81 (378)
T ss_pred CCHHHHHHH--HHHHHHHHhhCCHHHHHHHHhccCCCCHHHHHHHHHCCCcccccchhcCCCCCCHHHHHHHHHHHhCcc
Confidence 467788888 9999999998876543 356778899999999999998
Q ss_pred -------------------CCHHHHHhcccc-cCCCceeEEeecCCCCCCccccceeEEEEeCCEEEEeeeeccccCCcc
Q psy5138 263 -------------------GTTEQKEKYLPR-LAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 322 (575)
Q Consensus 263 -------------------g~~~~~~~~l~~-~~~~~~~~~~~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ 322 (575)
|+++|+++||++ ++|+.++++++|||+.|||...+.|++++++++|+|||+|.|||++..
T Consensus 82 ~~~~~~~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~g~~~~l~G~K~~vt~a~~ 161 (378)
T TIGR03203 82 VLEPYLATVVIGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNGET 161 (378)
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecCCCCCCCcccceEEEEEcCCEEEEEeEEEEecCCcc
Confidence 799999999999 899999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEEeCCC-CCCCceEEEEEeCCCCCeeecccCccCCCCCccceeEEEcceeeCCCCcccCCCchHHHHHHHHhh
Q psy5138 323 ANIFLVMANVDVS-KGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQ 401 (575)
Q Consensus 323 a~~~~v~a~~~~~-~~~~~~~~~lv~~~~~gv~i~~~~~~~G~rg~~s~~l~f~~v~Vp~~~~l~~~~~~~~~~~~~~~~ 401 (575)
||+++|.++++++ +++.++++|+||++.|||++.+.+.++|+ .++++.||||+||++++||.++.|+......+..
T Consensus 162 Ad~~lv~ar~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~g~---~~~~l~fd~v~vp~~~~lg~~~~g~~~~~~~l~~ 238 (378)
T TIGR03203 162 ADTLIVTARTKGARRDRTGIGVFLVPAGAKGVTIKGYPTQDGL---HAADITFTGVVVGADAAIGDPENALPLIERVVDD 238 (378)
T ss_pred CCEEEEEEecCCCCCCCCceEEEEEECCCCCceeccccccCCC---ceeeEEECCCcccHHhhcCCcchHHHHHHHHHHH
Confidence 9999999998643 24467899999999999999776666665 5689999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CcHHHHHHH
Q psy5138 402 GRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQ--PFIKQASMA 479 (575)
Q Consensus 402 ~r~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~~~~--~~~~~~~~a 479 (575)
.|+.+++.++|+++++++.+++|+++|++||+||+++|.||++|++|.++++++|++++.++...+.+. +....++++
T Consensus 239 ~r~~~aa~~~G~a~~al~~a~~ya~~R~qFG~pi~~~Q~vq~~lAdm~~~~e~ar~l~~~aa~~~~~~~~~~~~~~~a~a 318 (378)
T TIGR03203 239 ARAALCAEAVGLMDESLKTTVEYIKTRKQFGVPIGSFQVLQHRAADMFVAVEQARSMAMFATMASDFDDAKERANAIAAA 318 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCeecCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998877532 345688999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhcccccccccccccccccccCCChHHHHhhhhccceeccchHH
Q psy5138 480 KYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSN 559 (575)
Q Consensus 480 k~~~~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~~~~~~~~~~rd~~~~~~~~G~~~ 559 (575)
|+++++.+.++++.++|+ |||+||+++++++++||+++.+.+++|+++
T Consensus 319 K~~a~e~a~~va~~aiqi--------------------------------~Gg~G~t~e~~~~~~~r~a~~~~~~~G~~~ 366 (378)
T TIGR03203 319 KVQIGKSLKFVGQQSIQL--------------------------------HGGIGMTMEAKIGHYFKRLTMIEHTFGDTD 366 (378)
T ss_pred HHHHHHHHHHHHHHHHHh--------------------------------ccceeecccchHHHHHHHHHHHHHhcCCHH
Confidence 999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy5138 560 IQLSTIAKY 568 (575)
Q Consensus 560 ~~~~~i~~~ 568 (575)
+++..|++.
T Consensus 367 ~~~~~~~~~ 375 (378)
T TIGR03203 367 FHLSRVSAA 375 (378)
T ss_pred HHHHHHHHh
Confidence 999998873
No 13
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=100.00 E-value=3.4e-50 Score=415.12 Aligned_cols=322 Identities=38% Similarity=0.623 Sum_probs=302.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHhchhcCCccHHHHHHHHHhCC---------------------------------
Q psy5138 216 IKQASMAKYFASVAKLAKETIAPYVQKMESEEKIDETVLKTLFESGL--------------------------------- 262 (575)
Q Consensus 216 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~--------------------------------- 262 (575)
++++.++. +.+++|+.+.+.+.+.+.|+.+.+|++.|+.|.+.||
T Consensus 3 ~~~~~~l~--~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~~~ 80 (376)
T cd01156 3 DDEIEMLR--QSVREFAQKEIAPLAAKIDRDNEFPRDLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEISRASGSV 80 (376)
T ss_pred CHHHHHHH--HHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHhCCCCcccCCHhhCCCCCCHHHHHHHHHHHhccchhH
Confidence 45677777 8899999999999888889889999999999999997
Q ss_pred ------------------CCHHHHHhcccc-cCCCceeEEeecCCCCCCccccceeEEEEeCCEEEEeeeeccccCCccc
Q psy5138 263 ------------------GTTEQKEKYLPR-LAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIA 323 (575)
Q Consensus 263 ------------------g~~~~~~~~l~~-~~~~~~~~~~~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~a 323 (575)
|+++|+++|+++ ++|+.++++++|||..|+|...+.++++++++||+|||+|.|+||+.+|
T Consensus 81 ~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a 160 (376)
T cd01156 81 ALSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGPDA 160 (376)
T ss_pred HHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhCeEEEEEeCCEEEEEEEEEEecCCCcC
Confidence 788999999999 8999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEEeCCCCCCCceEEEEEeCCCCCeeecccCccCCCCCccceeEEEcceeeCCCCcccCCCchHHHHHHHHhhhH
Q psy5138 324 NIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGR 403 (575)
Q Consensus 324 ~~~~v~a~~~~~~~~~~~~~~lv~~~~~gv~i~~~~~~~G~rg~~s~~l~f~~v~Vp~~~~l~~~~~~~~~~~~~~~~~r 403 (575)
|+++|.+++++++++.++.+|+||++.|||++.++|+++||++++++++.|+||+||++++|+..+.|+......+...|
T Consensus 161 ~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r 240 (376)
T cd01156 161 DTLVVYAKTDPSAGAHGITAFIVEKGMPGFSRAQKLDKLGMRGSNTCELVFEDCEVPEENILGGENKGVYVLMSGLDYER 240 (376)
T ss_pred CEEEEEEEeCCCCCCCceEEEEEcCCCCCeecCCccccccCCCCCceEEEeCceEecHHHcCCCCCchHHHHHHHHhhHH
Confidence 99999999875544567889999999999999999999999999999999999999999999999999988888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q psy5138 404 IGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFA 483 (575)
Q Consensus 404 ~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~~~~~~~~~~~~ak~~~ 483 (575)
+.+++.++|+++++++.+++|+++|++||+|+.++|.+|+++++|.++++++|++++++++.++.+.......+.+|+++
T Consensus 241 ~~~aa~~lG~a~~al~~~~~~~~~R~~~g~~i~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~~k~~~ 320 (376)
T cd01156 241 LVLAGGPIGIMQAALDVAIPYAHQRKQFGQPIGEFQLVQGKLADMYTRLNASRSYLYTVAKACDRGNMDPKDAAGVILYA 320 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcCcchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988765566788899999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhcccccccccccccccccccCCChHHHHhhhhccceeccchHHHHHH
Q psy5138 484 SEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNIQLS 563 (575)
Q Consensus 484 ~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~~~~~~~~~~rd~~~~~~~~G~~~~~~~ 563 (575)
++.+.++++.++++ |||.||+.+++++++|||++...+++|++++++.
T Consensus 321 ~~~a~~~~~~a~~~--------------------------------~Gg~g~~~~~~l~r~~Rda~~~~~~~gt~~~~~~ 368 (376)
T cd01156 321 AEKATQVALDAIQI--------------------------------LGGNGYINDYPTGRLLRDAKLYEIGAGTSEIRRM 368 (376)
T ss_pred HHHHHHHHHHHHHH--------------------------------hcCcccccCCHHHHHHHHhhcceecCCHHHHHHH
Confidence 99999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q psy5138 564 TIAKYIAK 571 (575)
Q Consensus 564 ~i~~~~~~ 571 (575)
.|++.++|
T Consensus 369 ~i~~~~~~ 376 (376)
T cd01156 369 VIGRELFK 376 (376)
T ss_pred HHHHHhhC
Confidence 99998765
No 14
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-49 Score=413.62 Aligned_cols=320 Identities=33% Similarity=0.591 Sum_probs=299.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhHHHhchhcCCccHHHHHHHHHhCC--------------------------------
Q psy5138 215 FIKQASMAKYFASVAKLAKETIAPYVQKMESEEKIDETVLKTLFESGL-------------------------------- 262 (575)
Q Consensus 215 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~-------------------------------- 262 (575)
+++++.++. +.+++|+.+.+.+.+.+.|+.+.+|+++|++|.+.||
T Consensus 37 ~~~~~~~l~--~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s 114 (410)
T PTZ00461 37 PTPEHAALR--ETVAKFSREVVDKHAREDDINMHFNRDLFKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHHELSKYDPG 114 (410)
T ss_pred CCHHHHHHH--HHHHHHHHHhCCccHHHHhhhCCCCHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHHhhCch
Confidence 566777777 8999999999999888899989999999999999997
Q ss_pred -------------------CCHHHHHhcccc-cCCCceeEEeecCCCCCCccccceeEEEEeC-CEEEEeeeeccccCCc
Q psy5138 263 -------------------GTTEQKEKYLPR-LAQTDAGSFALSEPGSGSDAFAMKTTATKDG-NHYILNGSKMWISNAD 321 (575)
Q Consensus 263 -------------------g~~~~~~~~l~~-~~~~~~~~~~~te~~~gs~~~~~~~~a~~~~-~g~~l~G~k~~~s~~~ 321 (575)
|+++|+++|+++ ++|+.++++++|||..|||...+.|++++++ |||+|||+|.|+||+.
T Consensus 115 ~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~gg~~L~G~K~~vs~a~ 194 (410)
T PTZ00461 115 FCLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITNGT 194 (410)
T ss_pred HHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChHHCeEEEEEcCCCeEEEEeEEEeECCCc
Confidence 788999999999 8999999999999999999999999999975 5799999999999999
Q ss_pred cccEEEEEEEeCCCCCCCceEEEEEeCCCCCeeecccCccCCCCCccceeEEEcceeeCCCCcccCCCchHHHHHHHHhh
Q psy5138 322 IANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQ 401 (575)
Q Consensus 322 ~a~~~~v~a~~~~~~~~~~~~~~lv~~~~~gv~i~~~~~~~G~rg~~s~~l~f~~v~Vp~~~~l~~~~~~~~~~~~~~~~ 401 (575)
.|||++|.++++ .++.+|+||+++|||++.++|+++|+++++++++.|+||+||++++|+.++.|+......+..
T Consensus 195 ~Ad~~lv~a~~~-----~~~~~flVp~~~~Gv~v~~~~~~~G~r~~~~~~l~f~~v~Vp~~~~lg~~g~g~~~~~~~~~~ 269 (410)
T PTZ00461 195 VADVFLIYAKVD-----GKITAFVVERGTKGFTQGPKIDKCGMRASHMCQLFFEDVVVPAENLLGEEGKGMVGMMRNLEL 269 (410)
T ss_pred cCCEEEEEEEeC-----CceEEEEEeCCCCCeecCCCCcccCCCCCceEEEEEcceecCHHHhCCCCCccHHHHHHHHHH
Confidence 999999999964 247899999999999999999999999999999999999999999999999998888888899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q psy5138 402 GRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKY 481 (575)
Q Consensus 402 ~r~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~~~~~~~~~~~~ak~ 481 (575)
.|+.+++.++|+++++++.+++|+++|++||+|+.++|.+|++|++|.++++++|++++.+++.++.+.......+++|.
T Consensus 270 ~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~~~~~~~~~~~aK~ 349 (410)
T PTZ00461 270 ERVTLAAMAVGIAERSVELMTSYASERKAFGKPISNFGQIQRYIAEGYADTEAAKALVYSVSHNVHPGNKNRLGSDAAKL 349 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCeecCcCHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988876555667888999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhcccccccccccccccccccCCChHHHHhhhhccceeccchHHHH
Q psy5138 482 FASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNIQ 561 (575)
Q Consensus 482 ~~~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~~~~~~~~~~rd~~~~~~~~G~~~~~ 561 (575)
++++.+.++++.++++ |||.||+.+++++++|||++.+.+++|+++++
T Consensus 350 ~a~~~a~~v~~~a~qv--------------------------------~Gg~G~~~~~~l~r~~Rda~~~~i~~Gt~e~~ 397 (410)
T PTZ00461 350 FATPIAKKVADSAIQV--------------------------------MGGMGYSRDMPVERLWRDAKLLEIGGGTIEAH 397 (410)
T ss_pred HHHHHHHHHHHHHHHH--------------------------------hcCcccCCCCHHHHHHHHHhhheeccCHHHHH
Confidence 9999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q psy5138 562 LSTIAKYIAKEY 573 (575)
Q Consensus 562 ~~~i~~~~~~~~ 573 (575)
+..|++.++++.
T Consensus 398 ~~~i~~~~~~~~ 409 (410)
T PTZ00461 398 HKNITKDLLKGL 409 (410)
T ss_pred HHHHHHHHHhhc
Confidence 999999987753
No 15
>PLN02526 acyl-coenzyme A oxidase
Probab=100.00 E-value=2.5e-49 Score=411.20 Aligned_cols=320 Identities=27% Similarity=0.428 Sum_probs=296.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhHHHhchhcCCccHHHHHHHHHhCC--------------------------------
Q psy5138 215 FIKQASMAKYFASVAKLAKETIAPYVQKMESEEKIDETVLKTLFESGL-------------------------------- 262 (575)
Q Consensus 215 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~-------------------------------- 262 (575)
+++++.++. ..+++|+.+.+.+...+.+....+|.+.|++|.+.||
T Consensus 29 ~t~~~~~l~--~~~~~f~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~v~~~GG~G~~~~~~~~~~e~la~~~~s~ 106 (412)
T PLN02526 29 LTPEEQALR--KRVRECMEKEVAPIMTEYWEKAEFPFHIIPKLGSLGIAGGTIKGYGCPGLSITASAIATAEVARVDASC 106 (412)
T ss_pred CCHHHHHHH--HHHHHHHHHhcccchHHHHHhCCCCHHHHHHHHHCCCCcCcccccCCCCcCHHHHHHHHHHHHhhCchH
Confidence 567777777 8999999999988777767778899999999999997
Q ss_pred ------------------CCHHHHHhcccc-cCCCceeEEeecCCCCCCccccceeEEEEeCCEEEEeeeeccccCCccc
Q psy5138 263 ------------------GTTEQKEKYLPR-LAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIA 323 (575)
Q Consensus 263 ------------------g~~~~~~~~l~~-~~~~~~~~~~~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~a 323 (575)
|+++|+++|+++ ++|+.++++++|||+.|||...+.|++++++|||+|||+|.|+||+..|
T Consensus 107 ~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~gg~~lnG~K~~vs~~~~A 186 (412)
T PLN02526 107 STFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTTATKVEGGWILNGQKRWIGNSTFA 186 (412)
T ss_pred HHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEEEEeeecCCCcc
Confidence 789999999999 8899999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEEeCCCCCCCceEEEEEeCCCCCeeecccCccCCCCCccceeEEEcceeeCCCCcccCCCchHHHHHHHHhhhH
Q psy5138 324 NIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGR 403 (575)
Q Consensus 324 ~~~~v~a~~~~~~~~~~~~~~lv~~~~~gv~i~~~~~~~G~rg~~s~~l~f~~v~Vp~~~~l~~~~~~~~~~~~~~~~~r 403 (575)
||++|.++++.+ .++.+|+||++.|||++.+.|+++|+|+++++++.|+||+||++++|+..+ ++......+...|
T Consensus 187 d~~lv~a~~~~~---~~~~~flV~~~~~Gv~~~~~~~~~G~r~t~s~~v~f~~v~Vp~~~~l~~~~-~~~~~~~~~~~~r 262 (412)
T PLN02526 187 DVLVIFARNTTT---NQINGFIVKKGAPGLKATKIENKIGLRMVQNGDIVLKDVFVPDEDRLPGVN-SFQDTNKVLAVSR 262 (412)
T ss_pred CEEEEEEEeCCC---CCeEEEEEcCCCCCeEcCCCCCccCcCCCCeeEEEEeeEEECHHHhCCCcc-cHHHHHHHHHHHH
Confidence 999999997532 357899999999999999999999999999999999999999999997653 6666777889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q psy5138 404 IGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFA 483 (575)
Q Consensus 404 ~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~~~~~~~~~~~~ak~~~ 483 (575)
+.+++.++|+++++++.+++|+++|++||+||+++|.+|+++++|.++++++|++++++++.++.+.+.....+++|+++
T Consensus 263 ~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~aK~~a 342 (412)
T PLN02526 263 VMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQEKLVRMLGNIQAMFLVGWRLCKLYESGKMTPGHASLGKAWI 342 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCeeCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987665566789999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhcccccccccccccccccccCCChHHHHhhhhccceeccchHHHHHH
Q psy5138 484 SEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNIQLS 563 (575)
Q Consensus 484 ~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~~~~~~~~~~rd~~~~~~~~G~~~~~~~ 563 (575)
++.+.++++.++++ |||.||+++++++|+|||++...+++|++++++.
T Consensus 343 ~~~a~~v~~~a~~~--------------------------------~Gg~G~~~~~~l~r~~RD~~~~~~~~G~~ev~~~ 390 (412)
T PLN02526 343 TKKARETVALGREL--------------------------------LGGNGILADFLVAKAFCDLEPIYTYEGTYDINAL 390 (412)
T ss_pred HHHHHHHHHHHHHH--------------------------------hcCccccCcCHHHHHHhcccceEecCCHHHHHHH
Confidence 99999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q psy5138 564 TIAKYIAKE 572 (575)
Q Consensus 564 ~i~~~~~~~ 572 (575)
.|++.+++.
T Consensus 391 ~i~~~~l~~ 399 (412)
T PLN02526 391 VTGREITGI 399 (412)
T ss_pred HHHHHHhcC
Confidence 999999654
No 16
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=100.00 E-value=8.1e-49 Score=407.98 Aligned_cols=323 Identities=38% Similarity=0.636 Sum_probs=297.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhHHHhchhcCCccHHHHHHHHHhCC--------------------------------
Q psy5138 215 FIKQASMAKYFASVAKLAKETIAPYVQKMESEEKIDETVLKTLFESGL-------------------------------- 262 (575)
Q Consensus 215 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~-------------------------------- 262 (575)
.++++.++. ..+++|+.+.+.+. +.|+.+.+|.++|++|.+.||
T Consensus 27 ~~~~~~~l~--~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~v~e~l~~~~~~ 102 (409)
T cd01161 27 QTEELNMLV--GPVEKFFEEVNDPA--KNDQLEKIPRKTLTQLKELGLFGLQVPEEYGGLGLNNTQYARLAEIVGMDLGF 102 (409)
T ss_pred CCHHHHHHH--HHHHHHHHHhCCch--hhccccCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHhhChHH
Confidence 466777777 88999999988775 467778899999999999997
Q ss_pred ------------------CCHHHHHhcccc-cCCCceeEEeecCCCCCCccccceeEEEE--eCCEEEEeeeeccccCCc
Q psy5138 263 ------------------GTTEQKEKYLPR-LAQTDAGSFALSEPGSGSDAFAMKTTATK--DGNHYILNGSKMWISNAD 321 (575)
Q Consensus 263 ------------------g~~~~~~~~l~~-~~~~~~~~~~~te~~~gs~~~~~~~~a~~--~~~g~~l~G~k~~~s~~~ 321 (575)
|+++|+++|+++ ++|+.++++++|||..|||...+.+++++ +++||+|||+|.|+||+.
T Consensus 103 ~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gs~~~~~~t~a~~~~~g~g~~l~G~K~~vs~~~ 182 (409)
T cd01161 103 SVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTTAVLSEDGKHYVLNGSKIWITNGG 182 (409)
T ss_pred HHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEEecCCCCCCChhhCeeEEEEcCCCCEEEEEeEEEeecCCC
Confidence 889999999999 89999999999999999999999999998 455899999999999999
Q ss_pred cccEEEEEEEeCC--CCC--CCceEEEEEeCCCCCeeecccCccCCCCCccceeEEEcceeeCCCCcccCCCchHHHHHH
Q psy5138 322 IANIFLVMANVDV--SKG--YRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAG 397 (575)
Q Consensus 322 ~a~~~~v~a~~~~--~~~--~~~~~~~lv~~~~~gv~i~~~~~~~G~rg~~s~~l~f~~v~Vp~~~~l~~~~~~~~~~~~ 397 (575)
+|||++|.++++. .++ +.++.+|+||++.|||++.++|+++||++++++++.|+||+||++++|+.+++|+.....
T Consensus 183 ~Ad~~lv~ar~~~~~~~g~~~~~~~~flvp~~~~gv~~~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~g~g~~~~~~ 262 (409)
T cd01161 183 IADIFTVFAKTEVKDATGSVKDKITAFIVERSFGGVTNGPPEKKMGIKGSNTAEVYFEDVKIPVENVLGEVGDGFKVAMN 262 (409)
T ss_pred cCCEEEEEEEcCCCCCCCCCCCceEEEEEeCCCCCcccCCcccccCCCCCCceEEEeccEEECHHHcCCCCChHHHHHHH
Confidence 9999999999762 112 256889999999999999999999999999999999999999999999999999988888
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--cHHH
Q psy5138 398 FLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQP--FIKQ 475 (575)
Q Consensus 398 ~~~~~r~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~~~~~--~~~~ 475 (575)
.+...|+.+++.++|+++++++.+++|+++|++||+|+.++|.+|+++++|.++++++|++++++++.++.+.. ....
T Consensus 263 ~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~l~~~q~vq~~la~~~~~~~aar~l~~~a~~~~d~~~~~~~~~~ 342 (409)
T cd01161 263 ILNNGRFGMGAALIGTMKRCIEKAVDYANNRKQFGKKIHEFGLIQEKLANMAILQYATESMAYMTSGNMDRGLKAEYQIE 342 (409)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988753 4567
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhcccccccccccccccccccCCChHHHHhhhhccceecc
Q psy5138 476 ASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYE 555 (575)
Q Consensus 476 ~~~ak~~~~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~~~~~~~~~~rd~~~~~~~~ 555 (575)
++++|+++++.+.++++.++++ |||.||..++++++++||++...+++
T Consensus 343 ~~~aK~~a~~~a~~v~~~a~~~--------------------------------~Gg~G~~~~~~l~r~~Rd~~~~~~~~ 390 (409)
T cd01161 343 AAISKVFASEAAWLVVDEAIQI--------------------------------HGGMGFMREYGVERVLRDLRIFRIFE 390 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------------------------hcCccccCCCcHHHHHHhhhcceeec
Confidence 8999999999999999999999 99999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhhh
Q psy5138 556 GTSNIQLSTIAKYIAKEY 573 (575)
Q Consensus 556 G~~~~~~~~i~~~~~~~~ 573 (575)
|++++++.+|++.+|++.
T Consensus 391 G~~~~~~~~ia~~~l~~~ 408 (409)
T cd01161 391 GTNEILRLFIALTGLQHA 408 (409)
T ss_pred CHHHHHHHHHHHHHhhhC
Confidence 999999999999998764
No 17
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=100.00 E-value=1.3e-48 Score=403.10 Aligned_cols=319 Identities=55% Similarity=0.876 Sum_probs=299.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHhchhcCCccHHHHHHHHHhCC------------------------------------
Q psy5138 219 ASMAKYFASVAKLAKETIAPYVQKMESEEKIDETVLKTLFESGL------------------------------------ 262 (575)
Q Consensus 219 ~~~~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~------------------------------------ 262 (575)
+..+. ..+++|+.+.+.+.+.+.|+.+.+|.+.|++|.+.||
T Consensus 3 ~~~~~--~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~~~~~s~~~~ 80 (373)
T cd01158 3 HQMIR--KTVRDFAEKEIAPLAAEMDEKGEFPREVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELAKVDASVAVI 80 (373)
T ss_pred HHHHH--HHHHHHHHHhcccchHHHhhcCCCCHHHHHHHHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHHhhCccHHHH
Confidence 44555 8899999998888888899999999999999999998
Q ss_pred ---------------CCHHHHHhcccc-cCCCceeEEeecCCCCCCccccceeEEEEeCCEEEEeeeeccccCCccccEE
Q psy5138 263 ---------------GTTEQKEKYLPR-LAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIF 326 (575)
Q Consensus 263 ---------------g~~~~~~~~l~~-~~~~~~~~~~~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~ 326 (575)
++++|+++|+++ ++|+.++++++|||..||+...+.++++++++||+|||+|.|+||+.+|||+
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs~~~~~~~~a~~~~~g~~l~G~k~~vsg~~~ad~~ 160 (373)
T cd01158 81 VSVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEADFY 160 (373)
T ss_pred HHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCHHHCEeEEEEeCCEEEEeeEEEEEcCCCcCCEE
Confidence 888999999999 8899999999999999999888999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCCceEEEEEeCCCCCeeecccCccCCCCCccceeEEEcceeeCCCCcccCCCchHHHHHHHHhhhHHHH
Q psy5138 327 LVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGI 406 (575)
Q Consensus 327 ~v~a~~~~~~~~~~~~~~lv~~~~~gv~i~~~~~~~G~rg~~s~~l~f~~v~Vp~~~~l~~~~~~~~~~~~~~~~~r~~~ 406 (575)
+|.++++.+++..++.+|+||++.|||++.++|+++||++++++++.|+||+||++++|+.++.++......+...|+.+
T Consensus 161 lv~a~~~~~~~~~~~~~~lvp~~~~gv~i~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~ 240 (373)
T cd01158 161 IVFAVTDPSKGYRGITAFIVERDTPGLSVGKKEDKLGIRGSSTTELIFEDVRVPKENILGEEGEGFKIAMQTLDGGRIGI 240 (373)
T ss_pred EEEEEcCCCCCCCceEEEEEcCCCCCeecCCcccccccCCCCceEEEeCcEEecHHHcCCCCCchHHHHHHHHHHHHHHH
Confidence 99999765545567889999999999999999999999999999999999999999999999899988888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q psy5138 407 AAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEM 486 (575)
Q Consensus 407 ~a~~~G~~~~al~~~~~~~~~r~~~g~~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~~~~~~~~~~~~ak~~~~~~ 486 (575)
++.++|+++++++.+++|+++|.+||.++.++|.+|++++++.+.++++|+++++++..++.+.+......++|+++++.
T Consensus 241 ~a~~lG~a~~~l~~~~~~~~~R~~~g~~~~~~~~v~~~la~~~~~l~aa~~~~~~aa~~~~~~~~~~~~~~~~k~~~~~~ 320 (373)
T cd01158 241 AAQALGIAQAALDAAVDYAKERKQFGKPIADFQGIQFKLADMATEIEAARLLTYKAARLKDNGEPFIKEAAMAKLFASEV 320 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccCCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988766667889999999999
Q ss_pred HHHHHHHHHhhcCCCCCCcCCcchhhhhhhhcccccccccccccccccccCCChHHHHhhhhccceeccchHHHHHHHHH
Q psy5138 487 AGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNIQLSTIA 566 (575)
Q Consensus 487 ~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~~~~~~~~~~rd~~~~~~~~G~~~~~~~~i~ 566 (575)
+.++++.++++ +|+.||..++++++++||++...+++|++++++..|+
T Consensus 321 a~~~~~~~~~~--------------------------------~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~ 368 (373)
T cd01158 321 AMRVTTDAVQI--------------------------------FGGYGYTKDYPVERYYRDAKITEIYEGTSEIQRLVIA 368 (373)
T ss_pred HHHHHHHHHHh--------------------------------hcCccCCCCChHHHHHHHhhhccccCCHHHHHHHHHH
Confidence 99999999999 9999999999999999999999999999999999999
Q ss_pred HHHHh
Q psy5138 567 KYIAK 571 (575)
Q Consensus 567 ~~~~~ 571 (575)
+.++|
T Consensus 369 ~~~~~ 373 (373)
T cd01158 369 KHLLK 373 (373)
T ss_pred HHHhC
Confidence 99886
No 18
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=2.2e-48 Score=402.92 Aligned_cols=318 Identities=30% Similarity=0.456 Sum_probs=286.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHhchhc-----------CCccHHHHHHHHHhCC--------------------------
Q psy5138 220 SMAKYFASVAKLAKETIAPYVQKMESE-----------EKIDETVLKTLFESGL-------------------------- 262 (575)
Q Consensus 220 ~~~~~~~~a~~~~~~~~~~~~~~~d~~-----------~~~~~~~~~~l~~~G~-------------------------- 262 (575)
.+++ ..+++|+.+++.|...++|+. ..+++++++.+.+.||
T Consensus 4 ~~~~--~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~P~~~GG~g~~~~~~~~v~e~l 81 (394)
T cd01155 4 QELR--ARVKAFMEEHVYPAEQEFLEYYAEGGDRWWTPPPIIEKLKAKAKAEGLWNLFLPEVSGLSGLTNLEYAYLAEET 81 (394)
T ss_pred HHHH--HHHHHHHHHhcCccHHHHHhhcccccccccCCchhHHHHHHHHHhCCCCCCCCChhhCCCCcCHHHHHHHHHHH
Confidence 3455 788899999998877666642 1234588888889997
Q ss_pred --------------------------CCHHHHHhcccc-cCCCceeEEeecCCC-CCCccccceeEEEEeCCEEEEeeee
Q psy5138 263 --------------------------GTTEQKEKYLPR-LAQTDAGSFALSEPG-SGSDAFAMKTTATKDGNHYILNGSK 314 (575)
Q Consensus 263 --------------------------g~~~~~~~~l~~-~~~~~~~~~~~te~~-~gs~~~~~~~~a~~~~~g~~l~G~k 314 (575)
|+++|+++|+++ ++|+.++++++|||. .|||...+.|++++++|||+|||+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE~~~~gsd~~~~~t~a~~~~~g~~LnG~k 161 (394)
T cd01155 82 GRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRK 161 (394)
T ss_pred hhhcccchheeecccccccHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCCCchhhCEEEEEEECCEEEEEEEE
Confidence 788999999999 889999999999997 6899888999999999999999999
Q ss_pred ccccCCcc--ccEEEEEEEeCCCC--CCCceEEEEEeCCCCCeeecccCccCCCCC--ccceeEEEcceeeCCCCcccCC
Q psy5138 315 MWISNADI--ANIFLVMANVDVSK--GYRGITCFIVERSMEGFSVGKKENKLGMKA--SGTCSLHFDNVRVPEENIISGV 388 (575)
Q Consensus 315 ~~~s~~~~--a~~~~v~a~~~~~~--~~~~~~~~lv~~~~~gv~i~~~~~~~G~rg--~~s~~l~f~~v~Vp~~~~l~~~ 388 (575)
.|+||+.+ +||++|.+++++++ ++.++.+|+||++.||+++.++|+++||++ ++++++.|+||+||++++|+.+
T Consensus 162 ~~vs~~~~~~a~~~~v~a~~~~~~~~~~~~~~~flVp~~~~Gv~i~~~~~~~G~r~~~t~s~~v~f~dv~Vp~~~~lg~~ 241 (394)
T cd01155 162 WWSSGAGDPRCKIAIVMGRTDPDGAPRHRQQSMILVPMDTPGVTIIRPLSVFGYDDAPHGHAEITFDNVRVPASNLILGE 241 (394)
T ss_pred EEEcCCCCCCCCEEEEEEEeCCCcCCCCCceEEEEEeCCCCCeEeeccccccCCCCCCCCeeEEEEccEEecHHHcCCCC
Confidence 99999965 78999999976432 235689999999999999999999999997 6789999999999999999988
Q ss_pred CchHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy5138 389 GEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEA 468 (575)
Q Consensus 389 ~~~~~~~~~~~~~~r~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~~ 468 (575)
+.|+......+...|+..++.++|+++++++.+++|+++|++||+|+.++|.+|++|++|.++++++|++++++++.++.
T Consensus 242 ~~g~~~~~~~~~~~r~~~~a~~lG~a~~al~~~~~~~~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~ 321 (394)
T cd01155 242 GRGFEIAQGRLGPGRIHHCMRLIGAAERALELMCQRAVSREAFGKKLAQHGVVAHWIAKSRIEIEQARLLVLKAAHMIDT 321 (394)
T ss_pred ChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCcHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 89998888888899999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCC--cHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhcccccccccccccccccccCCChHHHHhh
Q psy5138 469 GQP--FIKQASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYR 546 (575)
Q Consensus 469 ~~~--~~~~~~~ak~~~~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~~~~~~~~~~r 546 (575)
+.. ....++++|+++++.+.++++.++++ +||.||+.+++++++||
T Consensus 322 ~~~~~~~~~~~~aK~~~~~~a~~~~~~a~~~--------------------------------~Gg~g~~~~~~l~r~~R 369 (394)
T cd01155 322 VGNKAARKEIAMIKVAAPRMALKIIDRAIQV--------------------------------HGAAGVSQDTPLANMYA 369 (394)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------hcCceecCCCHHHHHHH
Confidence 432 45778999999999999999999999 99999999999999999
Q ss_pred hhccceeccchHHHHHHHHHHHHHh
Q psy5138 547 DCKVGTIYEGTSNIQLSTIAKYIAK 571 (575)
Q Consensus 547 d~~~~~~~~G~~~~~~~~i~~~~~~ 571 (575)
|++...+++|++++++..|++.++|
T Consensus 370 da~~~~i~~Gt~~~~~~~ia~~~~~ 394 (394)
T cd01155 370 WARTLRIADGPDEVHLRSIARMELK 394 (394)
T ss_pred HHhhceeecCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998854
No 19
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=3.9e-47 Score=392.61 Aligned_cols=329 Identities=24% Similarity=0.350 Sum_probs=288.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhHHHhc-hhcCCccH----HHHHHHHHhCC---------------------------
Q psy5138 215 FIKQASMAKYFASVAKLAKETIAPYVQKM-ESEEKIDE----TVLKTLFESGL--------------------------- 262 (575)
Q Consensus 215 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-d~~~~~~~----~~~~~l~~~G~--------------------------- 262 (575)
+++++.+++ +.+++|+.+.+.+...+. .....+|. ++|++|.+.||
T Consensus 4 lteeq~~l~--~~~r~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~e~G~~gl~vPe~~GG~G~~~~~~~~v~eelg 81 (395)
T TIGR03204 4 FSKEEQAFR--DEVRSFFKDNVPADTRQKLVEGRHLTKDEMVTWWRILNKKGWGVSHWPKQYGGTGWTSVQHYIFNEELQ 81 (395)
T ss_pred CCHHHHHHH--HHHHHHHHHhCChhhhhhhhccCCCChHHHHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHHHHH
Confidence 567888888 999999999988765443 23345664 89999999998
Q ss_pred ----------------------CCHHHHHhcccc-cCCCceeEEeecCCCCCCccccceeEEEEeCCEEEEeeeeccccC
Q psy5138 263 ----------------------GTTEQKEKYLPR-LAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISN 319 (575)
Q Consensus 263 ----------------------g~~~~~~~~l~~-~~~~~~~~~~~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~ 319 (575)
|+++|+++||++ ++|+.++++++|||+.|||...+.|++++++++|+|||+|.|+|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~g~~~~LnG~K~~vt~ 161 (395)
T TIGR03204 82 SAPAPQPLAFGVSMVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTWTTL 161 (395)
T ss_pred hcCCCccchhHhHhhHHHHHHhCCHHHHHHHHHHHhCCchheEeEecCCCCCCChhhceEEEEEcCCEEEEeeEEEeecC
Confidence 889999999999 889889999999999999999999999999999999999999999
Q ss_pred CccccEEEEEEEeCCCC-CCCceEEEEEeCCCCCeeecccCccCCCCCccceeEEEcceeeCCCCcccCCCchHHHHHHH
Q psy5138 320 ADIANIFLVMANVDVSK-GYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGF 398 (575)
Q Consensus 320 ~~~a~~~~v~a~~~~~~-~~~~~~~~lv~~~~~gv~i~~~~~~~G~rg~~s~~l~f~~v~Vp~~~~l~~~~~~~~~~~~~ 398 (575)
+..||+++|.+++++++ +..++.+|+||.++|||++.+.....| +++++++.|+||+||++++||..+.++......
T Consensus 162 a~~Ad~~lv~a~~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~~--~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~ 239 (395)
T TIGR03204 162 AQHADWIFCLCRTDPTAKKQMGISFILVDMKSKGITVRPIQTIDG--GVEVNEVFFDDVEVPYENLVGEENKGWDYAKFL 239 (395)
T ss_pred CccCCeEEEEEEeCCCCCCCCCeEEEEEeCCCCCeEecChhhccC--CCceeEEEEcceEEcHHHcCCCCCchHHHHHHH
Confidence 99999999999975432 345789999999999999976555544 778999999999999999999888999988889
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCC-CcHHHH
Q psy5138 399 LNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLE-AGQ-PFIKQA 476 (575)
Q Consensus 399 ~~~~r~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~-~~~-~~~~~~ 476 (575)
+...|+..++ +|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|+++++++.... .+. .....+
T Consensus 240 l~~~r~g~aa--~g~a~~~l~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~~~~~~~~~a 317 (395)
T TIGR03204 240 LGNERTGIAR--VGVSKERIRRIKDLAAKVESGGKPVIEDAKFREKLAAVEIELKALELTQLRVVADEGKHGKGKPNPAS 317 (395)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHH
Confidence 9999988876 899999999999999999999999999999999999999999999999999985432 222 234579
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhcccccccccccccccccccCC----ChHHHHhhhhccce
Q psy5138 477 SMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKD----YPQEKYYRDCKVGT 552 (575)
Q Consensus 477 ~~ak~~~~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~~~----~~~~~~~rd~~~~~ 552 (575)
+++|+++++.+.++++.++|++|+.|+. +|+|||.||+.+ ++++++|||++...
T Consensus 318 a~aK~~~~~~~~~~~~~a~q~~g~~~~~----------------------~~~~Gg~G~~~~~~~~~~~~~~~r~~~~~~ 375 (395)
T TIGR03204 318 SVLKIKGSEIQQATTELLMEVIGPFAAP----------------------YDVHGDDGSNEAMDWTAQIAPSYFNNRKVS 375 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccc----------------------ccccccccccccchhhhHHHHHHHhccccc
Confidence 9999999999999999999999988872 344999999965 46999999999999
Q ss_pred eccchHHHHHHHHHHHHHh
Q psy5138 553 IYEGTSNIQLSTIAKYIAK 571 (575)
Q Consensus 553 ~~~G~~~~~~~~i~~~~~~ 571 (575)
|++|++++++..|+|.+++
T Consensus 376 i~~Gt~ei~~~~ia~~~l~ 394 (395)
T TIGR03204 376 IYGGSNEIQRNIIAKAVLG 394 (395)
T ss_pred eeccHHHHHHHHHHHHHcC
Confidence 9999999999999998864
No 20
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=4e-47 Score=394.35 Aligned_cols=324 Identities=42% Similarity=0.709 Sum_probs=300.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHhchh---cCCccHHHHHHHHHhCC-------------------------------
Q psy5138 217 KQASMAKYFASVAKLAKETIAPYVQKMES---EEKIDETVLKTLFESGL------------------------------- 262 (575)
Q Consensus 217 ~~~~~~~~~~~a~~~~~~~~~~~~~~~d~---~~~~~~~~~~~l~~~G~------------------------------- 262 (575)
++..++. ..+++|+.+.+.+...+.+. .+.+|++.++++.+.|+
T Consensus 7 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e~l~~~~~ 84 (393)
T COG1960 7 EEQEALR--AEVREFAEEELAPEAAEIDRRIEDERFPRELLRALAEAGLLGLTIPEEYGGLGLSPLEQAAVLEELARADA 84 (393)
T ss_pred HHHHHHH--HHHHHHHHHhcCcchhhhhhhcccccCHHHHHHHHHhCCcccCCCChhhCCCCcchhHHHHHHHHHHhhCc
Confidence 4555666 77889999988877777775 78999999999999997
Q ss_pred -----------------------CCHHHHHhcccc-cCCCceeEEeecCCCCCCccccce-eEEEEeCCEEEEeeeeccc
Q psy5138 263 -----------------------GTTEQKEKYLPR-LAQTDAGSFALSEPGSGSDAFAMK-TTATKDGNHYILNGSKMWI 317 (575)
Q Consensus 263 -----------------------g~~~~~~~~l~~-~~~~~~~~~~~te~~~gs~~~~~~-~~a~~~~~g~~l~G~k~~~ 317 (575)
|+++|+++|+++ +.|+.++|+++|||.+|||..... |++++++|+|+|||+|.|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~~g~~~lnG~K~~i 164 (393)
T COG1960 85 GGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQKIWI 164 (393)
T ss_pred chhhhHHHhccccccchHHHHHcCCHHHHHHhchhhhCCchhheeeccCCCCCcchhcCceeEEEecCCCEEEEeEEEEE
Confidence 799999999999 888899999999999999999987 7777767779999999999
Q ss_pred cCCccccEEEEEEEeCCC-CCCCceEEEEEeCC-CCCeeecccCccCCCCCccceeEEEcceeeCCCCcccCCCchHHHH
Q psy5138 318 SNADIANIFLVMANVDVS-KGYRGITCFIVERS-MEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIA 395 (575)
Q Consensus 318 s~~~~a~~~~v~a~~~~~-~~~~~~~~~lv~~~-~~gv~i~~~~~~~G~rg~~s~~l~f~~v~Vp~~~~l~~~~~~~~~~ 395 (575)
||+.+|||++|+++++++ +..+++++|+||++ +|||++.+.|+..|+++++++++.|+||+||.++++|+.+.|+...
T Consensus 165 s~~~~ad~~~v~Ar~~~~~~~~~gis~flV~~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~lig~~~~g~~~~ 244 (393)
T COG1960 165 SNAPVADWLLVLARTDPAPGKHKGISLFLVPKDLTPGVSVGPILKKMGLRGSATGEVFFDDVRVPAENLLGEEGDGFKIA 244 (393)
T ss_pred cCCCCCCEEEEEEEcCCcccccCceEEEEEeCCCCCCeeeccccCcCCcCCCCeeEEEECCeeccHHHcCCcCCchHHHH
Confidence 999999999999999866 45678999999999 5999999888755999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHH
Q psy5138 396 AGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQ 475 (575)
Q Consensus 396 ~~~~~~~r~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~~~~~~~~~ 475 (575)
...+...|+.+++..+|+++++++.+++|+++|++||++++++|.+|++|++|.++++++|++++++++..+.+.+....
T Consensus 245 ~~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fg~~i~~~~~vq~~la~~~~~~~a~r~~~~~aa~~~~~~~~~~~~ 324 (393)
T COG1960 245 METLNVERLGIAAQALGIAEAALEEAVAYARERKQFGRPIADFQLVQFKLADMAAELEAARLLVLRAAELADAGDDAGAE 324 (393)
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCchhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998887655578
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhcccccccccccccccccccCCChHHHHhhhhccceecc
Q psy5138 476 ASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYE 555 (575)
Q Consensus 476 ~~~ak~~~~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~~~~~~~~~~rd~~~~~~~~ 555 (575)
++++|+++++.+.++++.++|+ |||.||+.+++++|+|||++...+++
T Consensus 325 ~~~aK~~a~~~~~~~~~~a~q~--------------------------------~Gg~g~~~e~~i~r~~rda~~~~i~~ 372 (393)
T COG1960 325 AAMAKLFATEAALEVADEAVQV--------------------------------HGGYGYTEEYPVERYYRDARILRIYE 372 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------------------------hcCCccccCchHHHHHHHhHhheecc
Confidence 9999999999999999999999 99999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhhhc
Q psy5138 556 GTSNIQLSTIAKYIAKEYT 574 (575)
Q Consensus 556 G~~~~~~~~i~~~~~~~~~ 574 (575)
|++++++..+++.+++.+.
T Consensus 373 Gt~~i~~~~i~~~~~~~~~ 391 (393)
T COG1960 373 GTSEIQRLIIARRLLGLPA 391 (393)
T ss_pred CHHHHHHHHHHHHHhhhcc
Confidence 9999999999999988764
No 21
>PLN02636 acyl-coenzyme A oxidase
Probab=100.00 E-value=2.4e-47 Score=411.52 Aligned_cols=280 Identities=25% Similarity=0.432 Sum_probs=256.0
Q ss_pred CCHHHHHhcccc-cCCCceeEEeecCCCCCCccccceeEEEEe--CCEEEEe-----eeeccccCCcc-ccEEEEEEEeC
Q psy5138 263 GTTEQKEKYLPR-LAQTDAGSFALSEPGSGSDAFAMKTTATKD--GNHYILN-----GSKMWISNADI-ANIFLVMANVD 333 (575)
Q Consensus 263 g~~~~~~~~l~~-~~~~~~~~~~~te~~~gs~~~~~~~~a~~~--~~g~~l~-----G~k~~~s~~~~-a~~~~v~a~~~ 333 (575)
|+++|+++||++ .+++.++|+++|||++|||+.+++|+|+++ +++|+|| |+|+|++|+.. ||+++|+|++.
T Consensus 156 GTeeQk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~~defVLntP~~~g~K~wI~na~~~ad~~vV~Arl~ 235 (686)
T PLN02636 156 GTKKHRDKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDPLTDEFVINTPNDGAIKWWIGNAAVHGKFATVFARLK 235 (686)
T ss_pred CCHHHHHHHHHHHhCCChhhhhhccCCCcccCcccCeeEEEEcCCCCeEEECCCCCCeEEEeecCCcccCCEEEEEEEec
Confidence 999999999999 889999999999999999999999999998 7899999 99999999976 99999999986
Q ss_pred CC------CCCCceEEEEEeCC-------CCCeeecccCccCCCCCccceeEEEcceeeCCCCcccC-------------
Q psy5138 334 VS------KGYRGITCFIVERS-------MEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISG------------- 387 (575)
Q Consensus 334 ~~------~~~~~~~~~lv~~~-------~~gv~i~~~~~~~G~rg~~s~~l~f~~v~Vp~~~~l~~------------- 387 (575)
.. +.+.|+++|+||.+ .|||++.+.++++|+++.+++.+.||||+||.+++|+.
T Consensus 236 ~~~~~~~~~~~~Gi~~FlVp~r~~~~~~~~PGV~v~~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~g~v~~~G~y~~~ 315 (686)
T PLN02636 236 LPTHDSKGVSDMGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVGLNGVDNGALRFRSVRIPRDNLLNRFGDVSRDGKYTSS 315 (686)
T ss_pred CCCCCccCCCCCCeeEEEEecCccccCCCCCCeEeccCCCccCCCCCcceEEEEeeEEECHHHhccccccccCCCccccc
Confidence 32 12568999999987 69999999999999999999999999999999999953
Q ss_pred ---CCchHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhccccCcc------CccchhHHHHHHHHHHHHHHHH--
Q psy5138 388 ---VGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHR------IFDFQSVQHQISQAATQVECAR-- 456 (575)
Q Consensus 388 ---~~~~~~~~~~~~~~~r~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~------l~~~~~~~~~la~~~~~~~aar-- 456 (575)
.+.||...+..+..+|+.+++.++|+++++++++++|+..|+|||+| |.++|.+|++|++|.+.+++++
T Consensus 316 ~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~qFg~p~~~e~~I~d~q~vQ~~La~~la~~~a~~~a 395 (686)
T PLN02636 316 LPTINKRFAATLGELVGGRVGLAYGSVGVLKASNTIAIRYSLLRQQFGPPKQPEISILDYQSQQHKLMPMLASTYAFHFA 395 (686)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCEeCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 25688889999999999999999999999999999999999999999 9999999999999999999954
Q ss_pred --HHHHHHHHHHHcCC-----CcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhcccccccccccc
Q psy5138 457 --LLTYNAARLLEAGQ-----PFIKQASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDW 529 (575)
Q Consensus 457 --~~~~~a~~~~~~~~-----~~~~~~~~ak~~~~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~ 529 (575)
.+++.+++..+.+. +....++++|+++++.+.++++.|+++
T Consensus 396 ~~~l~~~~~~~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~~~~~rq~-------------------------------- 443 (686)
T PLN02636 396 TEYLVERYSEMKKTHDDQLVADVHALSAGLKAYITSYTAKALSTCREA-------------------------------- 443 (686)
T ss_pred HHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------
Confidence 66666666554433 246678999999999999999999999
Q ss_pred cccccccCCChHHHHhhhhccceeccchHHHHHHHHHHHHHhhhc
Q psy5138 530 MGGLGFTKDYPQEKYYRDCKVGTIYEGTSNIQLSTIAKYIAKEYT 574 (575)
Q Consensus 530 ~Gg~g~~~~~~~~~~~rd~~~~~~~~G~~~~~~~~i~~~~~~~~~ 574 (575)
|||+||+.++++++++||++...+++|+|+|++.+|++.+++.|.
T Consensus 444 ~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~~~iAr~ll~~~~ 488 (686)
T PLN02636 444 CGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAADLLKQYK 488 (686)
T ss_pred hcCCcccCcCcHHHHHHHhhhheeecChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998763
No 22
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=1.2e-46 Score=406.20 Aligned_cols=314 Identities=24% Similarity=0.338 Sum_probs=276.4
Q ss_pred chHHHHHHHHHHH-HHHHHHHHhhhHHHhchhcCCccHHHHHHHHHhCC-------------------------------
Q psy5138 215 FIKQASMAKYFAS-VAKLAKETIAPYVQKMESEEKIDETVLKTLFESGL------------------------------- 262 (575)
Q Consensus 215 ~~~~~~~~~~~~~-a~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~------------------------------- 262 (575)
+++++..+. +. +++++.. + ....+.++.+.||+++|+.|++.||
T Consensus 79 Ls~ee~~~~--d~~v~~l~~~-~-~~~~~~~~~~~~P~e~w~~L~e~G~~gl~IPeeyGG~Gls~~~~a~v~eeLg~~~~ 154 (777)
T PRK09463 79 LTAEEQAFL--DGPVEELCRM-V-NDWQITHELADLPPEVWQFIKEHGFFGMIIPKEYGGLEFSAYAHSRVLQKLASRSG 154 (777)
T ss_pred CCHHHHHHH--HHHHHHHHHH-H-HHHHHhccccCCCHHHHHHHHHCCCCcCCCchhhCCCCCCHHHHHHHHHHHHhhCc
Confidence 355655555 43 4444432 1 2233334457899999999999998
Q ss_pred ---------------------CCHHHHHhcccc-cCCCceeEEeecCCCCCCccccceeE-----EEEeCC---EEEEee
Q psy5138 263 ---------------------GTTEQKEKYLPR-LAQTDAGSFALSEPGSGSDAFAMKTT-----ATKDGN---HYILNG 312 (575)
Q Consensus 263 ---------------------g~~~~~~~~l~~-~~~~~~~~~~~te~~~gs~~~~~~~~-----a~~~~~---g~~l~G 312 (575)
|+++||++|||+ ++|+.++|+++|||++|||...+.++ ++++++ ||+|||
T Consensus 155 s~a~~~~v~~slg~~~lL~~~GteeQK~~yLp~La~Ge~i~afAlTEP~aGSDaa~i~Tta~~~~a~~dGd~~~g~vLNG 234 (777)
T PRK09463 155 TLAVTVMVPNSLGPGELLLHYGTDEQKDHYLPRLARGEEIPCFALTSPEAGSDAGSIPDTGVVCKGEWQGEEVLGMRLTW 234 (777)
T ss_pred chhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCcCCCcccccccceeeeeeecCCcccceEEEE
Confidence 899999999999 89999999999999999999887754 345565 699999
Q ss_pred eeccccCCccccEEEEEEEe-CCC-----CCCCceEEEEEeCCCCCeeecccCccCCCCCccceeEEEcceeeCCCCccc
Q psy5138 313 SKMWISNADIANIFLVMANV-DVS-----KGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIIS 386 (575)
Q Consensus 313 ~k~~~s~~~~a~~~~v~a~~-~~~-----~~~~~~~~~lv~~~~~gv~i~~~~~~~G~rg~~s~~l~f~~v~Vp~~~~l~ 386 (575)
+|.|||+++.||+++|.+++ +++ +++.++++|+||+++|||++.+.|+++|++ ..++++.|+||+||.+++||
T Consensus 235 ~K~~IT~a~~Ad~l~V~ar~~dp~~~~g~~~~~Git~fLVp~d~pGV~ig~~~~~lG~r-~~~g~v~fddV~VP~d~lLG 313 (777)
T PRK09463 235 NKRYITLAPIATVLGLAFKLYDPDGLLGDKEDLGITCALIPTDTPGVEIGRRHFPLNVP-FQNGPTRGKDVFIPLDYIIG 313 (777)
T ss_pred EEEeeCCCCccCEEEEEEEecCcccccCCCCCCceEEEEEECCCCCeEecccccccCcc-cccceEEeeeeecCHHHhcc
Confidence 99999999999999999986 322 235679999999999999999999999998 56899999999999999998
Q ss_pred CC---CchHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHhhhccccCccCccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy5138 387 GV---GEGYKIAAGFLNQGR-IGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNA 462 (575)
Q Consensus 387 ~~---~~~~~~~~~~~~~~r-~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~l~~~~~~~~~la~~~~~~~aar~~~~~a 462 (575)
.. +.|+.+.+..+..+| +.+++.++|+++++++.+++|+++|+|||+||+++|.||++|++|.+++++++++.+.+
T Consensus 314 ~~~~~G~G~~~l~~~L~~gR~i~laA~avG~ar~al~~Av~YA~~R~QFG~pIg~fQaVQ~~LAdma~~~~a~eaar~~~ 393 (777)
T PRK09463 314 GPKMAGQGWRMLMECLSVGRGISLPSNSTGGAKLAALATGAYARIRRQFKLPIGKFEGIEEPLARIAGNAYLMDAARTLT 393 (777)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 74 889999999999999 89999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhcccccccccccccccccccCC--Ch
Q psy5138 463 ARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKD--YP 540 (575)
Q Consensus 463 ~~~~~~~~~~~~~~~~ak~~~~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~~~--~~ 540 (575)
++.+|.+......++++|+++++.+.++++.++|+ |||.||+.+ ++
T Consensus 394 a~~~D~G~~~~~~aA~AK~~atE~a~~va~~AmQI--------------------------------hGG~G~~~~~~~~ 441 (777)
T PRK09463 394 TAAVDLGEKPSVLSAIAKYHLTERGRQVINDAMDI--------------------------------HGGKGICLGPNNF 441 (777)
T ss_pred HHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------hchhheeCCCCCh
Confidence 88888877667789999999999999999999999 999999987 89
Q ss_pred HHHHhhhhccceeccchHHHHHHHH
Q psy5138 541 QEKYYRDCKVGTIYEGTSNIQLSTI 565 (575)
Q Consensus 541 ~~~~~rd~~~~~~~~G~~~~~~~~i 565 (575)
++++|||++...|++|+|++++..|
T Consensus 442 leR~yRdari~~i~eGtn~i~r~~i 466 (777)
T PRK09463 442 LARAYQAAPIAITVEGANILTRSLM 466 (777)
T ss_pred HHHHHHhCcchheeCcHHHHHHHHH
Confidence 9999999999999999999999987
No 23
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=4.3e-46 Score=400.09 Aligned_cols=289 Identities=28% Similarity=0.406 Sum_probs=260.5
Q ss_pred HhchhcCCccHHHHHHHHHhCC----------------------------------------------------CCHHHH
Q psy5138 241 QKMESEEKIDETVLKTLFESGL----------------------------------------------------GTTEQK 268 (575)
Q Consensus 241 ~~~d~~~~~~~~~~~~l~~~G~----------------------------------------------------g~~~~~ 268 (575)
...++.+.||+++|+.|++.|| |+++|+
T Consensus 101 ~~~~~~~~~P~evw~~Lae~Gl~gl~IPeeyGGlG~s~~~~a~V~eela~~~~s~a~~~~v~~slg~~~lL~~~GTeEQK 180 (774)
T PRK13026 101 DIVQNRKDLPPEVWDYLKKEGFFALIIPKEYGGKGFSAYANSTIVSKIATRSVSAAVTVMVPNSLGPGELLTHYGTQEQK 180 (774)
T ss_pred hhhhhhcCCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 3345678999999999999997 899999
Q ss_pred Hhcccc-cCCCceeEEeecCCCCCCccccceeEEE-----EeCC---EEEEeeeeccccCCccccEEEEEEEe-CCC---
Q psy5138 269 EKYLPR-LAQTDAGSFALSEPGSGSDAFAMKTTAT-----KDGN---HYILNGSKMWISNADIANIFLVMANV-DVS--- 335 (575)
Q Consensus 269 ~~~l~~-~~~~~~~~~~~te~~~gs~~~~~~~~a~-----~~~~---g~~l~G~k~~~s~~~~a~~~~v~a~~-~~~--- 335 (575)
++|||+ ++|+.++|+++|||++|||..++.++++ ++++ ||+|||+|.|||+++.||+++|.+++ +++
T Consensus 181 ~~yLP~LAsGe~i~afAlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvLNG~K~~IT~A~~Ad~~~v~ar~~dpd~~~ 260 (774)
T PRK13026 181 DYWLPRLADGTEIPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLTWDKRYITLAPVATVLGLAFKLRDPDGLL 260 (774)
T ss_pred HhhhHHHhCCCeEEEEEecCCCCCCchhcccceeeeeeeeecCCccccEEEEEEEEeecCccccCEEEEEEEeeCccccc
Confidence 999999 8999999999999999999988876544 5666 69999999999999999999887764 322
Q ss_pred --CCCCceEEEEEeCCCCCeeecccCccCCCCCccceeEEEcceeeCCCCcccCC---CchHHHHHHHHhhhH-HHHHHH
Q psy5138 336 --KGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGV---GEGYKIAAGFLNQGR-IGIAAQ 409 (575)
Q Consensus 336 --~~~~~~~~~lv~~~~~gv~i~~~~~~~G~rg~~s~~l~f~~v~Vp~~~~l~~~---~~~~~~~~~~~~~~r-~~~~a~ 409 (575)
+++.++++|+||+++|||++.+.++++|+++. +++++||||+||.+++||.+ +.|+.+.+..+..+| +.+++.
T Consensus 261 g~~~~~GiT~fLVp~d~pGV~ig~~~~~lG~~~~-~g~v~fdDV~VP~d~lLG~~~~~G~G~~~l~~~L~~gR~i~laA~ 339 (774)
T PRK13026 261 GDKKELGITCALIPTDHPGVEIGRRHNPLGMAFM-NGTTRGKDVFIPLDWIIGGPDYAGRGWRMLVECLSAGRGISLPAL 339 (774)
T ss_pred cCCCCCceEEEEEECCCCCeEeeccccccccCcc-cceEEEeeeEccHHHhcCCcccCChHHHHHHHHHHHHHHHHHHHH
Confidence 23468999999999999999999999999974 58999999999999999875 789999999999999 899999
Q ss_pred HHHHHHHHHHHHHHHhhhccccCccCccchhHHHHHHHHHH---HHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q psy5138 410 MTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAAT---QVECARLLTYNAARLLEAGQPFIKQASMAKYFASEM 486 (575)
Q Consensus 410 ~~G~~~~al~~~~~~~~~r~~~g~~l~~~~~~~~~la~~~~---~~~aar~~~~~a~~~~~~~~~~~~~~~~ak~~~~~~ 486 (575)
++|+++.+++.+++|+++|+|||+||+++|.||++||+|.+ .++++|.++++++ |.+......++++|+++++.
T Consensus 340 a~G~A~~al~~Av~YA~~R~QFG~pIg~fQ~Vq~~LAdma~~~y~lEaaR~l~~~a~---D~G~~~~~~aA~AK~~atE~ 416 (774)
T PRK13026 340 GTASGHMATRTTGAYAYVRRQFGMPIGQFEGVQEALARIAGNTYLLEAARRLTTTGL---DLGVKPSVVTAIAKYHMTEL 416 (774)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 7899999988764 55554567899999999999
Q ss_pred HHHHHHHHHhhcCCCCCCcCCcchhhhhhhhcccccccccccccccccccCC--ChHHHHhhhhccceeccchHHHHHHH
Q psy5138 487 AGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKD--YPQEKYYRDCKVGTIYEGTSNIQLST 564 (575)
Q Consensus 487 ~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~~~--~~~~~~~rd~~~~~~~~G~~~~~~~~ 564 (575)
+.++++.++|+ |||.||+.+ ++++++|||++...+++|+|++++..
T Consensus 417 a~~va~~AmQI--------------------------------hGG~Gy~~e~~~~ler~yRdari~~i~eGtnei~R~l 464 (774)
T PRK13026 417 ARDVVNDAMDI--------------------------------HAGKGIQLGPKNYLGHAYMAVPIAITVEGANILTRNL 464 (774)
T ss_pred HHHHHHHHHHh--------------------------------hchheeeCCCCChHHHHHHHhhhhheeCcHHHHHHHH
Confidence 99999999999 999999998 89999999999999999999999975
Q ss_pred H
Q psy5138 565 I 565 (575)
Q Consensus 565 i 565 (575)
+
T Consensus 465 ~ 465 (774)
T PRK13026 465 M 465 (774)
T ss_pred H
Confidence 3
No 24
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=100.00 E-value=2e-45 Score=372.76 Aligned_cols=315 Identities=40% Similarity=0.650 Sum_probs=290.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHhchhcCCccHHHHHHHHHhCC-------CCHHHHHhcccc-cCCCceeEEeecCCCC
Q psy5138 219 ASMAKYFASVAKLAKETIAPYVQKMESEEKIDETVLKTLFESGL-------GTTEQKEKYLPR-LAQTDAGSFALSEPGS 290 (575)
Q Consensus 219 ~~~~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~-------g~~~~~~~~l~~-~~~~~~~~~~~te~~~ 290 (575)
+.++. +.+++++.+.+.+.....++...+|++.+++++.... |+++|+++||+. ++++.+++++++||..
T Consensus 3 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~ 80 (327)
T cd00567 3 QRELR--DSAREFAAEELEPYARERRETPEEPWELLAELGLLLGAALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGA 80 (327)
T ss_pred HHHHH--HHHHHHHHHhccccHHhHHhhCCCCHHHHHHHHHHhchHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCC
Confidence 45566 7888999999888887777777888888888887322 899999999999 8899999999999999
Q ss_pred CCccccceeEEEEeCCEEEEeeeeccccCCccccEEEEEEEeCCCC-CCCceEEEEEeCCCCCeeecccCccCCCCCccc
Q psy5138 291 GSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSK-GYRGITCFIVERSMEGFSVGKKENKLGMKASGT 369 (575)
Q Consensus 291 gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a~~~~~~-~~~~~~~~lv~~~~~gv~i~~~~~~~G~rg~~s 369 (575)
|++...+.++++++++||+|||+|.|+|++..|||++|.++++.++ +..++.+|+||++.|||++.+.|+++||+++++
T Consensus 81 gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~~~~~~~~~~~~~~lvp~~~~Gv~~~~~~~~~G~~~~~~ 160 (327)
T cd00567 81 GSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADLFIVLARTDEEGPGHRGISAFLVPADTPGVTVGRIWDKMGMRGSGT 160 (327)
T ss_pred CCchhhCEeEEEEeCCEEEEEEEEEEecCCccCCEEEEEEEeCCCCCCCCceEEEEEeCCCCCeEeccccccccCCCCce
Confidence 9999999999999999999999999999999999999999986543 345688999999999999999999999999999
Q ss_pred eeEEEcceeeCCCCcccCCCchHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCccchhHHHHHHHHH
Q psy5138 370 CSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAA 449 (575)
Q Consensus 370 ~~l~f~~v~Vp~~~~l~~~~~~~~~~~~~~~~~r~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~l~~~~~~~~~la~~~ 449 (575)
+++.|+||+||++++++..+.++......+...++.++++++|+++++++.+++|+++|.+||+|+.++|.+|++|+++.
T Consensus 161 ~~v~~~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~aa~~~G~a~~al~~~~~~~~~r~~~g~~~~~~~~vq~~la~~~ 240 (327)
T cd00567 161 GELVFDDVRVPEDNLLGEEGGGFELAMKGLNVGRLLLAAVALGAARAALDEAVEYAKQRKQFGKPLAEFQAVQFKLADMA 240 (327)
T ss_pred EEEEECCEEecHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccchHHHHHHHHHH
Confidence 99999999999999999888888888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhccccccccccc
Q psy5138 450 TQVECARLLTYNAARLLEAGQP-FIKQASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCID 528 (575)
Q Consensus 450 ~~~~aar~~~~~a~~~~~~~~~-~~~~~~~ak~~~~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~ 528 (575)
+.+++++++++.+++.++.+.+ ......++|.++++.+.++++.++++
T Consensus 241 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~k~~~~~~a~~~~~~~~~~------------------------------- 289 (327)
T cd00567 241 AELEAARLLLYRAAWLLDQGPDEARLEAAMAKLFATEAAREVADLAMQI------------------------------- 289 (327)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------
Confidence 9999999999999999988765 56788999999999999999999999
Q ss_pred ccccccccCCChHHHHhhhhccceeccchHHHHHHHHHH
Q psy5138 529 WMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNIQLSTIAK 567 (575)
Q Consensus 529 ~~Gg~g~~~~~~~~~~~rd~~~~~~~~G~~~~~~~~i~~ 567 (575)
|||.||..+++++++|||++...+++|++++++..+++
T Consensus 290 -~Gg~g~~~~~~l~r~~rd~~~~~~~~G~~~~~~~~~~~ 327 (327)
T cd00567 290 -HGGRGYSREYPVERYLRDARAARIAEGTAEIQRLIIAR 327 (327)
T ss_pred -ccCccccCCCHHHHHHHhhhcceeecCHHHHHHHHhcC
Confidence 99999999999999999999999999999999988753
No 25
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=100.00 E-value=1.9e-45 Score=382.26 Aligned_cols=271 Identities=30% Similarity=0.507 Sum_probs=250.8
Q ss_pred CCHHHHHhcccc-cCCC----ceeEEeecCCCCCCccccceeEEEEe-CCEEEEeeeeccccCCccccEEEEEEEeCCC-
Q psy5138 263 GTTEQKEKYLPR-LAQT----DAGSFALSEPGSGSDAFAMKTTATKD-GNHYILNGSKMWISNADIANIFLVMANVDVS- 335 (575)
Q Consensus 263 g~~~~~~~~l~~-~~~~----~~~~~~~te~~~gs~~~~~~~~a~~~-~~g~~l~G~k~~~s~~~~a~~~~v~a~~~~~- 335 (575)
|+++|+ +||++ ++++ .++|+++|||++|||+.+..|+|+++ +|+|+|||+|+|+|++ .||+++|+++++++
T Consensus 127 g~~~~~-~~l~~l~~g~~~~~~~~~~~~TEp~~GSD~~~~~T~A~~~~g~~~~LnG~K~f~s~a-~Ad~~lv~Art~~~~ 204 (418)
T cd01154 127 GPEELK-QYLPGLLSDRYKTGLLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAP-LADAALVLARPEGAP 204 (418)
T ss_pred CcHHHH-HHHHHHhCCCcccchhheeeecCCCcccchhhCeEEEEECCCCcEEEEEEEEEecCc-ccCEEEEEEECCCCC
Confidence 677764 69999 8886 78999999999999999999999999 8999999999999999 99999999998754
Q ss_pred CCCCceEEEEEeCCCC-----CeeecccCccCCCCCccceeEEEcceeeCCCCcccCCCchHHHHHHHHhhhHHHHHHHH
Q psy5138 336 KGYRGITCFIVERSME-----GFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQM 410 (575)
Q Consensus 336 ~~~~~~~~~lv~~~~~-----gv~i~~~~~~~G~rg~~s~~l~f~~v~Vp~~~~l~~~~~~~~~~~~~~~~~r~~~~a~~ 410 (575)
++..++++|+||++.| ||++.+.|+++|++++++++|.|+|| .++++|.++.|+......++..|+.+++.+
T Consensus 205 ~~~~gls~flVp~~~~~~~~~Gv~i~~~~~~~G~r~~~~~ev~f~dv---~~~~lG~~g~G~~~~~~~l~~~R~~~aa~~ 281 (418)
T cd01154 205 AGARGLSLFLVPRLLEDGTRNGYRIRRLKDKLGTRSVATGEVEFDDA---EAYLIGDEGKGIYYILEMLNISRLDNAVAA 281 (418)
T ss_pred CCCCcEEEEEEeccCCCCCCCCeEecccccccCCCCCCeEEEEecCc---CccccCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 4457899999999875 99999999999999999999999998 378999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--c------HHHHHHHHHH
Q psy5138 411 TGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQP--F------IKQASMAKYF 482 (575)
Q Consensus 411 ~G~~~~al~~~~~~~~~r~~~g~~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~~~~~--~------~~~~~~ak~~ 482 (575)
+|+++++++.+++|+++|++||+++.++|.+|++|++|.++++++|++++++++.++.... . ....+++|++
T Consensus 282 ~G~a~~al~~a~~ya~~R~~fg~~l~~~~~v~~~La~~~~~~eaar~l~~~aa~~~~~~~~~~~~~~~~~r~~~~~aK~~ 361 (418)
T cd01154 282 LGIMRRALSEAYHYARHRRAFGKPLIDHPLMRRDLAEMEVDVEAATALTFRAARAFDRAAADKPVEAHMARLATPVAKLI 361 (418)
T ss_pred HHHHHHHHHHHHHHHhcCcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998886321 1 2246779999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhcccccccccccccccccccCCChHHHHhhhhccceeccchHHHHH
Q psy5138 483 ASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNIQL 562 (575)
Q Consensus 483 ~~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~~~~~~~~~~rd~~~~~~~~G~~~~~~ 562 (575)
+++.+.++++.++++ +||.||..+++++++|||++...|++|+++||+
T Consensus 362 ~~e~a~~v~~~a~~i--------------------------------~Gg~G~~~~~~l~r~~RDa~~~~i~~Gt~~i~~ 409 (418)
T cd01154 362 ACKRAAPVTSEAMEV--------------------------------FGGNGYLEEWPVARLHREAQVTPIWEGTGNIQA 409 (418)
T ss_pred HHHHHHHHHHHHHHH--------------------------------hcCcEEcCCChHHHHHhcCcCcceeccHHHHHH
Confidence 999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy5138 563 STIAKYIA 570 (575)
Q Consensus 563 ~~i~~~~~ 570 (575)
..+.|.+.
T Consensus 410 ~~~~r~~~ 417 (418)
T cd01154 410 LDVLRVLV 417 (418)
T ss_pred HHHHHHhc
Confidence 99999875
No 26
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=2.9e-45 Score=380.79 Aligned_cols=308 Identities=32% Similarity=0.521 Sum_probs=277.3
Q ss_pred HHHHHHHHHHhhhHHHhchhcCC--------cc---HHHHHHHHHhCC--------------------------------
Q psy5138 226 ASVAKLAKETIAPYVQKMESEEK--------ID---ETVLKTLFESGL-------------------------------- 262 (575)
Q Consensus 226 ~~a~~~~~~~~~~~~~~~d~~~~--------~~---~~~~~~l~~~G~-------------------------------- 262 (575)
..+++|+.+.+.+.+.++|++.. || .++|++|.+.||
T Consensus 3 ~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~p~~~~e~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~s 82 (407)
T cd01153 3 EEVARLAENVLAPLNADGDREGPVFDDGRVVVPPPFKEALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIFSRGDAP 82 (407)
T ss_pred HHHHHHHHHHhhhhHHhHhccCCcccCCceEcChhHHHHHHHHHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhHH
Confidence 56778999999988888887664 99 678999999998
Q ss_pred -----------------CCHHHHHhcccc-cCCCceeEEeecCCCCCCccccceeEEEEe-CCEEEEeeeeccccCCccc
Q psy5138 263 -----------------GTTEQKEKYLPR-LAQTDAGSFALSEPGSGSDAFAMKTTATKD-GNHYILNGSKMWISNADIA 323 (575)
Q Consensus 263 -----------------g~~~~~~~~l~~-~~~~~~~~~~~te~~~gs~~~~~~~~a~~~-~~g~~l~G~k~~~s~~~~a 323 (575)
|+++|+++|+++ +.|+.+.++++|||..|||...+.|+++++ +|||+|||+|.|+||+.+|
T Consensus 83 ~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~ggy~l~G~K~~is~~~~a 162 (407)
T cd01153 83 LMYASGTQGAAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFISAGEHD 162 (407)
T ss_pred HHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCCcccceEEEEECCCCcEEEeeEEEEEeCCCcc
Confidence 899999999999 889999999999999999999999999998 6789999999999999887
Q ss_pred ----cEEEEEEEeCCC-CCCCceEEEEEeCCC-----CCeeecccCccCCCCCccceeEEEcceeeCCCCcccCCCchHH
Q psy5138 324 ----NIFLVMANVDVS-KGYRGITCFIVERSM-----EGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYK 393 (575)
Q Consensus 324 ----~~~~v~a~~~~~-~~~~~~~~~lv~~~~-----~gv~i~~~~~~~G~rg~~s~~l~f~~v~Vp~~~~l~~~~~~~~ 393 (575)
++++|.+++++. ++..++.+|+||++. |||++.++|+++||++++++++.|+||+|| +|+.++.|+.
T Consensus 163 ~~~~~~~~v~a~~~~~~~~~~~~~~flVp~~~~~~~~~gv~i~~~~~~~G~r~t~s~~v~f~~v~Vp---~lg~~~~g~~ 239 (407)
T cd01153 163 MSENIVHLVLARSEGAPPGVKGLSLFLVPKFLDDGERNGVTVARIEEKMGLHGSPTCELVFDNAKGE---LIGEEGMGLA 239 (407)
T ss_pred cccccEEEEEEeCCCCCCCCCceEEEEEeccCcCCCCCCeEeccchhccCCCCCCeEEEEEcCEEEe---eeCCCCccHH
Confidence 477888987542 234568899999987 899999999999999999999999999999 7888889998
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhccccCcc--------CccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5138 394 IAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHR--------IFDFQSVQHQISQAATQVECARLLTYNAARL 465 (575)
Q Consensus 394 ~~~~~~~~~r~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~--------l~~~~~~~~~la~~~~~~~aar~~~~~a~~~ 465 (575)
.....+...|+.+++.++|+++++++.+++|+++|++||+| +.++|.+|++|++|.+++++++++++++++.
T Consensus 240 ~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~~~~~~~~~~~iq~~la~~~a~~~a~~~~~~~aa~~ 319 (407)
T cd01153 240 QMFAMMNGARLGVGTQGTGLAEAAYLNALAYAKERKQGGDLIKAAPAVTIIHHPDVRRSLMTQKAYAEGSRALDLYTATV 319 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCcCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88899999999999999999999999999999999999999 7889999999999999999999999999998
Q ss_pred HHcCCCc--------------HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhcccccccccccccc
Q psy5138 466 LEAGQPF--------------IKQASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMG 531 (575)
Q Consensus 466 ~~~~~~~--------------~~~~~~ak~~~~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~G 531 (575)
++..... ....+++|+++++.+.++++.++++ +|
T Consensus 320 ~d~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~--------------------------------~G 367 (407)
T cd01153 320 QDLAERKATEGEDRKALSALADLLTPVVKGFGSEAALEAVSDAIQV--------------------------------HG 367 (407)
T ss_pred ccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------hc
Confidence 8765311 2345689999999999999999999 99
Q ss_pred cccccCCChHHHHhhhhccceeccchHHHHHH-HHHHH
Q psy5138 532 GLGFTKDYPQEKYYRDCKVGTIYEGTSNIQLS-TIAKY 568 (575)
Q Consensus 532 g~g~~~~~~~~~~~rd~~~~~~~~G~~~~~~~-~i~~~ 568 (575)
|.||..+++++++|||++...+++|++++++. .|+|.
T Consensus 368 g~g~~~~~~l~r~~Rd~~~~~~~~Gt~~~~~~~~~~~~ 405 (407)
T cd01153 368 GSGYTREYPIEQYYRDARITTIYEGTTGIQALDLIGRK 405 (407)
T ss_pred CceecCCCcHHHHHHhhhhheeecChHHHHHHHHhhcc
Confidence 99999999999999999999999999998887 55543
No 27
>PLN02876 acyl-CoA dehydrogenase
Probab=100.00 E-value=7.1e-45 Score=406.85 Aligned_cols=278 Identities=27% Similarity=0.444 Sum_probs=258.9
Q ss_pred CCHHHHHhcccc-cCCCceeEEeecCCC-CCCccccceeEEEEeCCEEEEeeeeccccCC--ccccEEEEEEEeCCC-CC
Q psy5138 263 GTTEQKEKYLPR-LAQTDAGSFALSEPG-SGSDAFAMKTTATKDGNHYILNGSKMWISNA--DIANIFLVMANVDVS-KG 337 (575)
Q Consensus 263 g~~~~~~~~l~~-~~~~~~~~~~~te~~-~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~--~~a~~~~v~a~~~~~-~~ 337 (575)
|+++|+++||++ ++|+.++++++|||+ .|||..++.|+++++++||+|||+|.|+||+ ..||+++|.++++++ ++
T Consensus 533 gt~eqk~~~L~~l~~G~~~~~~a~tEp~~~gsd~~~~~t~a~~~g~g~vLnG~K~~vtga~~~~ad~~lv~ar~~~~~~~ 612 (822)
T PLN02876 533 GNKEQQLEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIRRQGDSYVINGTKWWTSGAMDPRCRVLIVMGKTDFNAPK 612 (822)
T ss_pred CCHHHHHHHHHHHhCCCceeEEEecCCCccCcccccceEEEEEcCCEEEEEeEEEEecCCCCCCCCEEEEEEecCCCCCC
Confidence 788999999999 899999999999997 7899999999999999999999999999999 579999999997643 23
Q ss_pred CCceEEEEEeCCCCCeeecccCccCCCCCc--cceeEEEcceeeCCCCcccCCCchHHHHHHHHhhhHHHHHHHHHHHHH
Q psy5138 338 YRGITCFIVERSMEGFSVGKKENKLGMKAS--GTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQ 415 (575)
Q Consensus 338 ~~~~~~~lv~~~~~gv~i~~~~~~~G~rg~--~s~~l~f~~v~Vp~~~~l~~~~~~~~~~~~~~~~~r~~~~a~~~G~~~ 415 (575)
..++++|+||.++|||++.++|+++|++++ +++++.||||+||++++|+..+.|+......+...|+..++.++|+++
T Consensus 613 ~~~~s~flV~~~~pGv~i~~~~~~~G~r~~~~~~~~v~fd~V~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~vG~a~ 692 (822)
T PLN02876 613 HKQQSMILVDIQTPGVQIKRPLLVFGFDDAPHGHAEISFENVRVPAKNILLGEGRGFEIAQGRLGPGRLHHCMRLIGAAE 692 (822)
T ss_pred CCcceEEEEeCCCCCceeecccceeccCCCCCCeeEEEEcceeechhheecCCCchHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 356889999999999999999999999984 689999999999999999988889988888899999999999999999
Q ss_pred HHHHHHHHHhhhccccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHHHHHHHH
Q psy5138 416 GCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQ--PFIKQASMAKYFASEMAGHITRQ 493 (575)
Q Consensus 416 ~al~~~~~~~~~r~~~g~~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~~~~--~~~~~~~~ak~~~~~~~~~~~~~ 493 (575)
++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++++++.++... .....++++|+++++.+.++++.
T Consensus 693 ~ale~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~leaar~l~~~aa~~~d~~~~~~~~~~~a~aK~~a~e~a~~va~~ 772 (822)
T PLN02876 693 RGMQLMVQRALSRKAFGKLIAQHGSFLSDLAKCRVELEQTRLLVLEAADQLDRLGNKKARGIIAMAKVAAPNMALKVLDM 772 (822)
T ss_pred HHHHHHHHHHHhhhhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998732 24567899999999999999999
Q ss_pred HHhhcCCCCCCcCCcchhhhhhhhcccccccccccccccccccCCChHHHHhhhhccceeccchHHHHHHHHHHHHHhh
Q psy5138 494 CIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNIQLSTIAKYIAKE 572 (575)
Q Consensus 494 ~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~~~~~~~~~~rd~~~~~~~~G~~~~~~~~i~~~~~~~ 572 (575)
++|+ |||.||+.+++++++|||++...+++|++++++..|++.++++
T Consensus 773 a~qv--------------------------------~Gg~G~~~e~~l~r~~Rdar~~~i~~Gt~e~~~~~ia~~~~~~ 819 (822)
T PLN02876 773 AMQV--------------------------------HGAAGVSSDTVLAHLWATARTLRIADGPDEVHLGTIAKLELQR 819 (822)
T ss_pred HHHh--------------------------------cCCCccCCcchHHHHHHhhhhcccccChHHHHHHHHHHHHHHh
Confidence 9999 9999999999999999999999999999999999999999876
No 28
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-44 Score=387.43 Aligned_cols=318 Identities=29% Similarity=0.446 Sum_probs=285.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHhchhcCCc---------c---HHHHHHHHHhCC---------------------
Q psy5138 216 IKQASMAKYFASVAKLAKETIAPYVQKMESEEKI---------D---ETVLKTLFESGL--------------------- 262 (575)
Q Consensus 216 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~d~~~~~---------~---~~~~~~l~~~G~--------------------- 262 (575)
.+...++. +.+++|+.+++.|...+.|+++.+ | .+.|+++.+.||
T Consensus 57 ~~~~~~il--~~a~~fa~~~~~p~~~~~D~~~~~~~~~g~v~~p~g~~e~~~~l~e~G~~~l~~Pee~GG~Gl~~~~~~~ 134 (622)
T PTZ00456 57 KELMDSLL--EEASKLATQTLLPLYESSDSEGCVLLKDGNVTTPKGFKEAYQALKAGGWTGISEPEEYGGQALPLSVGFI 134 (622)
T ss_pred HHHHHHHH--HHHHHHHHHhcccchhhHhhccCccccCCcccCChhHHHHHHHHHHcCCCCCCCCcccCCCCcCHHHHHH
Confidence 34455566 889999999999988888876543 5 589999999998
Q ss_pred -----------------------------CCHHHHHhcccc-cCCCceeEEeecCCCCCCccccceeEEEEeCC-EEEEe
Q psy5138 263 -----------------------------GTTEQKEKYLPR-LAQTDAGSFALSEPGSGSDAFAMKTTATKDGN-HYILN 311 (575)
Q Consensus 263 -----------------------------g~~~~~~~~l~~-~~~~~~~~~~~te~~~gs~~~~~~~~a~~~~~-g~~l~ 311 (575)
|+++||++||++ ++|+.++++++|||++|||+..+.|+|+++++ +|+||
T Consensus 135 ~~E~~~~a~~~~~~~~~l~~ga~~~L~~~Gs~eqk~~~Lp~l~sGe~~~t~alTEp~aGSD~~~l~T~A~~~gdG~y~L~ 214 (622)
T PTZ00456 135 TRELMATANWGFSMYPGLSIGAANTLMAWGSEEQKEQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKIT 214 (622)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCChhhhhhccCCccCCCcccCeeEEEECCCCcEEEe
Confidence 899999999999 99999999999999999999999999999876 59999
Q ss_pred eeeccccCCccc----cEEEEEEEeCCC-CCCCceEEEEEeCCC----------CCeeecccCccCCCCCccceeEEEcc
Q psy5138 312 GSKMWISNADIA----NIFLVMANVDVS-KGYRGITCFIVERSM----------EGFSVGKKENKLGMKASGTCSLHFDN 376 (575)
Q Consensus 312 G~k~~~s~~~~a----~~~~v~a~~~~~-~~~~~~~~~lv~~~~----------~gv~i~~~~~~~G~rg~~s~~l~f~~ 376 (575)
|+|.|||++.++ ++++|++|++++ ++.+++++|+||++. +||++.+.++++|+++++++.+.|+|
T Consensus 215 G~K~fIt~g~~~~~~n~~~lVlAr~~~~~~g~~GiSlFlVp~~~~~~~G~~~~~~gv~~~~~~~kmG~~gs~t~~l~fd~ 294 (622)
T PTZ00456 215 GTKIFISAGDHDLTENIVHIVLARLPNSLPTTKGLSLFLVPRHVVKPDGSLETAKNVKCIGLEKKMGIKGSSTCQLSFEN 294 (622)
T ss_pred eEEEEecCCchhhccCcEEEEEEEecCCCCCCCceEEEEEeCCCCCcCCCccCCCCeeecCcccccCCCCCceEEEEeeC
Confidence 999999999874 678999998754 456789999999865 47888888899999999999999999
Q ss_pred eeeCCCCcccCCCchHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccc------------CccCccchhHHHH
Q psy5138 377 VRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQF------------GHRIFDFQSVQHQ 444 (575)
Q Consensus 377 v~Vp~~~~l~~~~~~~~~~~~~~~~~r~~~~a~~~G~~~~al~~~~~~~~~r~~~------------g~~l~~~~~~~~~ 444 (575)
|.+++||.+++|+......++..|+.+++.++|+++++++.+++|+++|+|| ++||+++|.+|++
T Consensus 295 ---~~~~llG~~~~Gl~~~~~~mn~aRl~vaa~~lG~a~~Al~~Al~YAk~R~Qfr~~~~~~~~~~~~~~I~~~~~Vr~~ 371 (622)
T PTZ00456 295 ---SVGYLIGEPNAGMKQMFTFMNTARVGTALEGVCHAELAFQNALRYARERRSMRALSGTKEPEKPADRIICHANVRQN 371 (622)
T ss_pred ---hhHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccccCCCCccccCHHHHHH
Confidence 4689999999999999999999999999999999999999999999999984 6889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC---C----------cHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCcchh
Q psy5138 445 ISQAATQVECARLLTYNAARLLEAGQ---P----------FIKQASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEK 511 (575)
Q Consensus 445 la~~~~~~~aar~~~~~a~~~~~~~~---~----------~~~~~~~ak~~~~~~~~~~~~~~~~~~G~~~~~~~~p~~R 511 (575)
|++|.+.++++|+++++++..+|.+. + ......++|.++++.+.++++.++|+
T Consensus 372 L~~~~a~~eaaral~~~aA~~~D~~~~~~~~~~~~~~~~~~~~~t~iaK~~~te~a~~va~~aiQv-------------- 437 (622)
T PTZ00456 372 ILFAKAVAEGGRALLLDVGRLLDIHAAAKDAATREALDHEIGFYTPIAKGCLTEWGVEAASRCLQV-------------- 437 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--------------
Confidence 99999999999999999999988642 1 12346789999999999999999999
Q ss_pred hhhhhhcccccccccccccccccccCCChHHHHhhhhccceeccchHHHHH-HHHHHHHH
Q psy5138 512 FYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNIQL-STIAKYIA 570 (575)
Q Consensus 512 ~~RD~~~~~~~~~~~~~~~Gg~g~~~~~~~~~~~rd~~~~~~~~G~~~~~~-~~i~~~~~ 570 (575)
|||+||++++++++++||++...|++|+++||+ ..|+|.++
T Consensus 438 ------------------~GG~Gy~~e~~ler~~RDari~~i~eGt~~iq~~dli~rkll 479 (622)
T PTZ00456 438 ------------------WGGHGYIKGNGMEQILRDARIGTLYEGTTGIQALDFIGRKVL 479 (622)
T ss_pred ------------------ccCCCccCCchHHHHHHHhhcccccCChHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999997 58899887
No 29
>PLN02312 acyl-CoA oxidase
Probab=100.00 E-value=4.2e-45 Score=393.14 Aligned_cols=280 Identities=21% Similarity=0.382 Sum_probs=258.5
Q ss_pred CCHHHHHhcccc-cCCCceeEEeecCCCCCCccccceeEEEEe--CCEEEEe-----eeeccccCC-ccccEEEEEEEeC
Q psy5138 263 GTTEQKEKYLPR-LAQTDAGSFALSEPGSGSDAFAMKTTATKD--GNHYILN-----GSKMWISNA-DIANIFLVMANVD 333 (575)
Q Consensus 263 g~~~~~~~~l~~-~~~~~~~~~~~te~~~gs~~~~~~~~a~~~--~~g~~l~-----G~k~~~s~~-~~a~~~~v~a~~~ 333 (575)
|+++|+++||++ ..++.++|+++|||++|||+.+++|+|+++ +++|+|| |+|+|++|+ ..||+++|+|++.
T Consensus 168 GTeeqk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~~~vV~Arl~ 247 (680)
T PLN02312 168 GTKRHHDKWLKDTEDYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQLH 247 (680)
T ss_pred CCHHHHHHHHHHHhCCCeeeEeeecCCCcCcchhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccCCEEEEEEEEC
Confidence 899999999999 889999999999999999999999999998 5789999 799999999 7999999999997
Q ss_pred CCCCCCceEEEEEe---CC---CCCeeecccCccCCCCCccceeEEEcceeeCCCCcccC----------------CCch
Q psy5138 334 VSKGYRGITCFIVE---RS---MEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISG----------------VGEG 391 (575)
Q Consensus 334 ~~~~~~~~~~~lv~---~~---~~gv~i~~~~~~~G~rg~~s~~l~f~~v~Vp~~~~l~~----------------~~~~ 391 (575)
.++++.|+++|+|| .+ .|||++.+.++++|+++.+++.+.||||+||.+++|+. ++.|
T Consensus 248 ~~~~~~Gv~~FlV~ird~~~~~~PGV~ig~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~~~V~~~G~y~~~~~~~~~g 327 (680)
T PLN02312 248 INGKNEGVHAFIAQIRDQDGNICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKYVSAIKDPDQR 327 (680)
T ss_pred CCCCCCCeEEEEEeecCCCCCCCCCEEeccCCCcccccCCCceEEEEccEEECHHHhCCccceeCCCCceecCCCCccch
Confidence 65556789999998 23 89999999999999999999999999999999999984 5678
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhccccCc----c---CccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5138 392 YKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGH----R---IFDFQSVQHQISQAATQVECARLLTYNAAR 464 (575)
Q Consensus 392 ~~~~~~~~~~~r~~~~a~~~G~~~~al~~~~~~~~~r~~~g~----~---l~~~~~~~~~la~~~~~~~aar~~~~~a~~ 464 (575)
+...+..+..+|+.+++.++|+++++++.+++|++.|+|||. | |.++|.+|++|++|.+++++.+.....+.+
T Consensus 328 f~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~QFg~~~~~~E~~I~dyq~~Q~rLa~~la~~~a~~~~a~~l~~ 407 (680)
T PLN02312 328 FGAFLAPLTSGRVTIAVSAIYSSKVGLAIAIRYSLSRRAFSVTPNGPEVLLLDYPSHQRRLLPLLAKTYAMSFAANDLKM 407 (680)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCCCCCccchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999999999999995 4 999999999999999999998888777777
Q ss_pred HHHcCC-----CcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhcccccccccccccccccccCCC
Q psy5138 465 LLEAGQ-----PFIKQASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDY 539 (575)
Q Consensus 465 ~~~~~~-----~~~~~~~~ak~~~~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~~~~ 539 (575)
.++.+. +....++++|.++++.+.++++.|+|+ |||+||+.++
T Consensus 408 ~~~~~~~~~~~~~~~~as~aKa~~t~~a~~~~~~~rq~--------------------------------~GG~Gy~~~~ 455 (680)
T PLN02312 408 IYVKRTPESNKAIHVVSSGFKAVLTWHNMRTLQECREA--------------------------------CGGQGLKTEN 455 (680)
T ss_pred HHhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------hcCccccccC
Confidence 665532 346688999999999999999999999 9999999999
Q ss_pred hHHHHhhhhccceeccchHHHHHHHHHHHHHhhhc
Q psy5138 540 PQEKYYRDCKVGTIYEGTSNIQLSTIAKYIAKEYT 574 (575)
Q Consensus 540 ~~~~~~rd~~~~~~~~G~~~~~~~~i~~~~~~~~~ 574 (575)
+++++++|++...+++|+|++++.+++|.+++.|.
T Consensus 456 ~l~~l~rd~~~~~t~EG~n~Vl~~~iAr~ll~~~~ 490 (680)
T PLN02312 456 RVGQLKAEYDVQSTFEGDNNVLMQQVSKALLAEYV 490 (680)
T ss_pred cHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988773
No 30
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=1.1e-44 Score=373.75 Aligned_cols=313 Identities=28% Similarity=0.444 Sum_probs=276.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHh-----chhcCCccHHHHHHHHHhCC-------------------------------
Q psy5138 219 ASMAKYFASVAKLAKETIAPYVQK-----MESEEKIDETVLKTLFESGL------------------------------- 262 (575)
Q Consensus 219 ~~~~~~~~~a~~~~~~~~~~~~~~-----~d~~~~~~~~~~~~l~~~G~------------------------------- 262 (575)
+.++. ..++.|+.+++.+.... .++.+.+|.+.++.|.+.||
T Consensus 3 ~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~~~~~ 80 (380)
T cd01152 3 EEAFR--AEVRAWLAAHLPPELREESALGYREGREDRRRWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREEMAAAGA 80 (380)
T ss_pred HHHHH--HHHHHHHHhcCCccccccccccccccchHHHHHHHHHHhCCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCC
Confidence 44566 78889999988775532 24567799999999999997
Q ss_pred -------------------CCHHHHHhcccc-cCCCceeEEeecCCCCCCccccceeEEEEeCCEEEEeeeeccccCCcc
Q psy5138 263 -------------------GTTEQKEKYLPR-LAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 322 (575)
Q Consensus 263 -------------------g~~~~~~~~l~~-~~~~~~~~~~~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ 322 (575)
|+++|+++||++ ++++.++++++|||..|||...+.++++++++||+|||+|.|+|++.+
T Consensus 81 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~L~G~K~~it~~~~ 160 (380)
T cd01152 81 PVPFNQIGIDLAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAHY 160 (380)
T ss_pred CcccchhhHHHHHHHHHHhCCHHHHHHHhHHHhCCchhheeecCCCCCCcchhhCeeeEEEcCCeEEEecEEEEEcCccc
Confidence 788999999999 888888999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEEeCCC-CCCCceEEEEEeCCCCCeeecccCccCCCCCccceeEEEcceeeCCCCcccCCCchHHHHHHHHhh
Q psy5138 323 ANIFLVMANVDVS-KGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQ 401 (575)
Q Consensus 323 a~~~~v~a~~~~~-~~~~~~~~~lv~~~~~gv~i~~~~~~~G~rg~~s~~l~f~~v~Vp~~~~l~~~~~~~~~~~~~~~~ 401 (575)
+|+++|.++++++ +++.++.+|+||++.||+++.+.|+++| +++++++.|+||+||.+++|+.++.++......+..
T Consensus 161 ad~~lv~a~~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~g--~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~ 238 (380)
T cd01152 161 ADWAWLLVRTDPEAPKHRGISILLVDMDSPGVTVRPIRSING--GEFFNEVFLDDVRVPDANRVGEVNDGWKVAMTTLNF 238 (380)
T ss_pred cCEEEEEEEeCCCccCcCCeEEEEEeCCCCceEeeehhhccC--CCCcceEEecCcCcchhcccCCCCchHHHHHHHHHh
Confidence 9999999997643 2235688999999999999999998887 678899999999999999999988898888888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q psy5138 402 GRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKY 481 (575)
Q Consensus 402 ~r~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~~~~~~~~~~~~ak~ 481 (575)
.|+.+++. +..+++.+++|+++|.+||+||.++|.+|++|++|.++++++|++++++++.++.+.......+++|+
T Consensus 239 ~r~~~~~~----~~~~~~~a~~~a~~r~~~g~~l~~~~~vq~~la~~~~~l~~a~~l~~~aa~~~~~~~~~~~~~a~aK~ 314 (380)
T cd01152 239 ERVSIGGS----AATFFELLLARLLLLTRDGRPLIDDPLVRQRLARLEAEAEALRLLVFRLASALAAGKPPGAEASIAKL 314 (380)
T ss_pred cccccchh----hhHHHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHH
Confidence 88776654 44455566778888899999999999999999999999999999999999999887655567899999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhcccccccccccccccccccCC--------ChHHHHhhhhcccee
Q psy5138 482 FASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKD--------YPQEKYYRDCKVGTI 553 (575)
Q Consensus 482 ~~~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~~~--------~~~~~~~rd~~~~~~ 553 (575)
++++.+.++++.++++ +||.||+.+ +++++++||++.+.+
T Consensus 315 ~~~~~a~~v~~~a~~i--------------------------------~Gg~g~~~~~~~~~~~~~~~~r~~rd~~~~~~ 362 (380)
T cd01152 315 FGSELAQELAELALEL--------------------------------LGTAALLRDPAPGAELAGRWEADYLRSRATTI 362 (380)
T ss_pred HHHHHHHHHHHHHHHh--------------------------------cCccccccccccccccccHHHHHHHhCcccee
Confidence 9999999999999999 888888877 799999999999999
Q ss_pred ccchHHHHHHHHHHHHHh
Q psy5138 554 YEGTSNIQLSTIAKYIAK 571 (575)
Q Consensus 554 ~~G~~~~~~~~i~~~~~~ 571 (575)
++|++++++..|++.+++
T Consensus 363 ~~g~~~~~~~~i~~~~~~ 380 (380)
T cd01152 363 YGGTSEIQRNIIAERLLG 380 (380)
T ss_pred eccHHHHHHHHHHHHhcC
Confidence 999999999999998864
No 31
>KOG0138|consensus
Probab=100.00 E-value=5e-45 Score=332.86 Aligned_cols=320 Identities=32% Similarity=0.499 Sum_probs=299.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhHHHhchhcCCccHHHHHHHHHhCC-------------------------------
Q psy5138 214 PFIKQASMAKYFASVAKLAKETIAPYVQKMESEEKIDETVLKTLFESGL------------------------------- 262 (575)
Q Consensus 214 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~------------------------------- 262 (575)
.++++...++ ...++.+.+.+.|++.++.+...||.+.+.+|+.+|+
T Consensus 54 qLT~dE~air--~~~Reycq~~l~Prvtea~r~e~F~~~i~pemGsmGvlG~tikGYGCaG~S~vaygl~~rEveRVDs~ 131 (432)
T KOG0138|consen 54 QLTEDEIAIR--DTFREYCQERLMPRVTEANRNEVFDREIIPEMGSMGVLGPTIKGYGCAGVSSVAYGLLAREVERVDSG 131 (432)
T ss_pred hcCHHHHHHH--HHHHHHHHHHhhhHHHHHhhhccCChhhhhhhhccccccCcccCcCCCchHHHHHHHHHHHHHHhhhh
Confidence 3577777888 8899999999999999999999999999999999996
Q ss_pred -------------------CCHHHHHhcccc-cCCCceeEEeecCCCCCCccccceeEEEEeCCE--EEEeeeeccccCC
Q psy5138 263 -------------------GTTEQKEKYLPR-LAQTDAGSFALSEPGSGSDAFAMKTTATKDGNH--YILNGSKMWISNA 320 (575)
Q Consensus 263 -------------------g~~~~~~~~l~~-~~~~~~~~~~~te~~~gs~~~~~~~~a~~~~~g--~~l~G~k~~~s~~ 320 (575)
|+++||++|||. +.++.++||++|||++|||+..+.|+|++++++ |.|||+|.|++|+
T Consensus 132 yrs~~sVqsSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLTEPn~GSdpsgmeT~At~~e~~ktyklNGsKtWI~ns 211 (432)
T KOG0138|consen 132 YRSAMSVQSSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLTEPNHGSDPSGMETRATYDESNKTYKLNGSKTWITNS 211 (432)
T ss_pred chhhhhhhhhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEeccCCCCCCCcccccceeEEccCCceEEECCeeeeecCC
Confidence 999999999999 999999999999999999999999999999887 9999999999999
Q ss_pred ccccEEEEEEEeCCCCCCCceEEEEEeCCCCCeeecccCccCCCCCccceeEEEcceeeCCCCcccCCCchHHHHHHHHh
Q psy5138 321 DIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLN 400 (575)
Q Consensus 321 ~~a~~~~v~a~~~~~~~~~~~~~~lv~~~~~gv~i~~~~~~~G~rg~~s~~l~f~~v~Vp~~~~l~~~~~~~~~~~~~~~ 400 (575)
+.||+++|.||...+ ..+.-|+|.++.+|++.-....++++|++.++.+-+|||+||++++|... .++.-....++
T Consensus 212 p~aDl~vvwAr~~t~---n~I~GFi~~k~~~GL~apkI~gK~sLRas~tG~Ilmd~V~VPeE~~LPg~-~s~qgpf~cLn 287 (432)
T KOG0138|consen 212 PMADLFVVWARCETD---NKIRGFILEKGMRGLSAPKIEGKFSLRASATGMILMDGVEVPEENLLPGA-SSLQGPFGCLN 287 (432)
T ss_pred cccceEEEEEecccC---CceeeEEEecCCCCCcCCCcCCeeeeeecccCceeecCCcCChhhcCCCc-cccCCchhhhh
Confidence 999999999998743 34778999999999999888999999999999999999999999999543 24444567789
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHH
Q psy5138 401 QGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAK 480 (575)
Q Consensus 401 ~~r~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~~~~~~~~~~~~ak 480 (575)
..|.+++...+|+++.+++.+.+|...|+|||.|++.+|.+|.+|++|..++...-..+.+..++.|++......+++.|
T Consensus 288 naR~giAWg~lGase~c~~~arqY~ldRkQFG~PLAanQL~Q~Kladmltei~lgl~~clrl~rLkd~g~~tp~qiSl~K 367 (432)
T KOG0138|consen 288 NARYGIAWGALGASEFCLHTARQYTLDRKQFGRPLAANQLIQKKLADMLTEITLGLQACLRLGRLKDQGKATPEQISLLK 367 (432)
T ss_pred hhhhheeehhchhHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhcccccccccccccccccccCCChHHHHhhhhccceeccchHHH
Q psy5138 481 YFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNI 560 (575)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~~~~~~~~~~rd~~~~~~~~G~~~~ 560 (575)
.+.+--+.++++.+.++ +||-|..+|+.+.|.+-++...-++||+-+|
T Consensus 368 rn~~gKaleiAr~~Rdm--------------------------------LGgNGI~deyhv~rh~~nLE~vnTYEGThDi 415 (432)
T KOG0138|consen 368 RNNCGKALEIARQARDM--------------------------------LGGNGISDEYHVIRHAMNLEAVNTYEGTHDI 415 (432)
T ss_pred hccchhHHHHHHHHHHH--------------------------------hcCCcchhHHHHHHHHcCccceecccccchH
Confidence 99999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q psy5138 561 QLSTIAKYIAK 571 (575)
Q Consensus 561 ~~~~i~~~~~~ 571 (575)
+...++|.+.+
T Consensus 416 haLilGRaiTG 426 (432)
T KOG0138|consen 416 HALILGRAITG 426 (432)
T ss_pred HHHhhhhhhhh
Confidence 99999999854
No 32
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=3.2e-44 Score=384.86 Aligned_cols=281 Identities=25% Similarity=0.379 Sum_probs=257.4
Q ss_pred CCCHHHHHhcccc-cCCCceeEEeecCCCCCCccccceeEEEEe--CCEEEEe-----eeeccccC-CccccEEEEEEEe
Q psy5138 262 LGTTEQKEKYLPR-LAQTDAGSFALSEPGSGSDAFAMKTTATKD--GNHYILN-----GSKMWISN-ADIANIFLVMANV 332 (575)
Q Consensus 262 ~g~~~~~~~~l~~-~~~~~~~~~~~te~~~gs~~~~~~~~a~~~--~~g~~l~-----G~k~~~s~-~~~a~~~~v~a~~ 332 (575)
+|+++|+++|||+ ..++.++|+++|||++|||+.+++|+|+++ +++|+|| |+|+|++| +..||+++|+|++
T Consensus 109 ~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~defvLntPt~~g~K~wi~~~g~~A~~~vV~Arl 188 (646)
T PTZ00460 109 LGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEAVKFWPGELGFLCNFALVYAKL 188 (646)
T ss_pred hCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEEEcCCCCEEEECCCCCCeEEEccCCCCCCCCEEEEEEEE
Confidence 3799999999999 899999999999999999999999999985 6889998 99999998 6889999999999
Q ss_pred CCCCCCCceEEEEEeC-------CCCCeeecccCccCCCCCccceeEEEcceeeCCCCcccC------CC----ch-HHH
Q psy5138 333 DVSKGYRGITCFIVER-------SMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISG------VG----EG-YKI 394 (575)
Q Consensus 333 ~~~~~~~~~~~~lv~~-------~~~gv~i~~~~~~~G~rg~~s~~l~f~~v~Vp~~~~l~~------~~----~~-~~~ 394 (575)
..++++.|+++|+||. ..|||++.+.++++|+++.+++.+.||||+||.+++||. .+ .| +..
T Consensus 189 ~~~~~~~Gi~~FlV~ird~~~~~~~pGV~vg~~~~k~G~~~~dng~l~Fd~VrVP~~nlLg~~~~v~~~G~~~~~g~~~~ 268 (646)
T PTZ00460 189 IVNGKNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMGYAVKDNGFLSFDHYRIPLDSLLARYIKVSEDGQVERQGNPKV 268 (646)
T ss_pred CcCCCCCceEEEEEeccccCCCCCCCCeEEeccccccCcCCCCceEEEeceEEECHHHhCCcccccCCCCccccCCcHHH
Confidence 7655567899999993 249999999999999999999999999999999999985 33 24 677
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhccccCc------cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy5138 395 AAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGH------RIFDFQSVQHQISQAATQVECARLLTYNAARLLEA 468 (575)
Q Consensus 395 ~~~~~~~~r~~~~a~~~G~~~~al~~~~~~~~~r~~~g~------~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~~ 468 (575)
....+...|+.+++.++|+++++++++++|++.|+|||+ ||+++|.+|++|++|.+.+++++.+.+++++.++.
T Consensus 269 ~~~~l~~~R~~iaa~~~g~a~~Al~iAvrYa~~R~QFg~~~~~E~pI~~yQ~~Q~rLa~~la~~~A~r~~~~~a~~~~~~ 348 (646)
T PTZ00460 269 SYASMMYMRNLIIDQYPRFAAQALTVAIRYSIYRQQFTNDNKQENSVLEYQTQQQKLLPLLAEFYACIFGGLKIKELVDD 348 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCCcHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888999999999999999999999999999999997 99999999999999999999999999999988764
Q ss_pred C------CC------cHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhccccccccccccccccccc
Q psy5138 469 G------QP------FIKQASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFT 536 (575)
Q Consensus 469 ~------~~------~~~~~~~ak~~~~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~ 536 (575)
. .+ ....++++|.++++.+.++++.|+|+ |||+||+
T Consensus 349 ~~~~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~~~~~~q~--------------------------------~GG~Gy~ 396 (646)
T PTZ00460 349 NFNRVQKNDFSLLQLTHAILSAAKANYTYFVSNCAEWCRLS--------------------------------CGGHGYA 396 (646)
T ss_pred hhhhhccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------hCCcccc
Confidence 2 12 24578899999999999999999999 9999999
Q ss_pred CCChHHHHhhhhccceeccchHHHHHHHHHHHHHhhhc
Q psy5138 537 KDYPQEKYYRDCKVGTIYEGTSNIQLSTIAKYIAKEYT 574 (575)
Q Consensus 537 ~~~~~~~~~rd~~~~~~~~G~~~~~~~~i~~~~~~~~~ 574 (575)
.+++++++++|++...+++|++++++.++++.+++.|.
T Consensus 397 ~~~~l~~~~rda~~~~t~eG~n~vl~~~iar~ll~~~~ 434 (646)
T PTZ00460 397 HYSGLPAIYFDMSPNITLEGENQIMYLQLARYLLKQLQ 434 (646)
T ss_pred ccCcHHHHHHHhccceeecCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998774
No 33
>KOG0137|consensus
Probab=100.00 E-value=1.6e-44 Score=358.78 Aligned_cols=297 Identities=40% Similarity=0.666 Sum_probs=280.2
Q ss_pred HhchhcCCccHHHHHHHHHhCC---------------------------------------------------CCHHHHH
Q psy5138 241 QKMESEEKIDETVLKTLFESGL---------------------------------------------------GTTEQKE 269 (575)
Q Consensus 241 ~~~d~~~~~~~~~~~~l~~~G~---------------------------------------------------g~~~~~~ 269 (575)
...|+....++..++.|++.|+ |+++|++
T Consensus 102 ~k~d~~~~~~~~t~e~l~elG~fgl~v~~e~~G~G~~ntq~arl~e~~~~~D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~ 181 (634)
T KOG0137|consen 102 KKNDKLGKIEETTLEALRELGLFGLQVPSEFDGLGFCNTQYARLFEIVSVADLNVGVTLGAHQSIGLKGLLLYGTDEQKQ 181 (634)
T ss_pred hhhhhhcccchhHHHHHHHhCceeeccCcccCccccchHHHHHHhhccccccccceeeeccchhhheeeeeecCCHHHHH
Confidence 4568888999999999999996 9999999
Q ss_pred hcccc-cCCCceeEEeecCCCCCCccccceeEEEE--eCCEEEEeeeeccccCCccccEEEEEEEeCCCC----CCCceE
Q psy5138 270 KYLPR-LAQTDAGSFALSEPGSGSDAFAMKTTATK--DGNHYILNGSKMWISNADIANIFLVMANVDVSK----GYRGIT 342 (575)
Q Consensus 270 ~~l~~-~~~~~~~~~~~te~~~gs~~~~~~~~a~~--~~~g~~l~G~k~~~s~~~~a~~~~v~a~~~~~~----~~~~~~ 342 (575)
+|||+ ++|+.+.++++|||..|||.....++|+. +++.|+|||.|.|+||+..||+++|+|+++.++ ..++++
T Consensus 182 kYL~~LaSg~~~~A~altE~s~Gsdaas~~~~a~~s~dg~~y~LNG~Kiwisn~g~Adif~VfAqt~~~~~~g~~k~k~T 261 (634)
T KOG0137|consen 182 KYLPKLASGKLIAAFALTEPSSGSDAASGRTTATLSPDGKHYVLNGSKIWISNGGLADIFTVFAQTEVDPADGEVKRKIT 261 (634)
T ss_pred HHHHhhhcCCccceEEEecCCCCcccccceeeeeecCCCCeEEEcCeeEEEecCccceeeeeeeccccCCCCccccCceE
Confidence 99999 99999999999999999999999999885 567899999999999999999999999998442 245689
Q ss_pred EEEEeCCCCCeeecccCccCCCCCccceeEEEcceeeCCCCcccCCCchHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy5138 343 CFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATI 422 (575)
Q Consensus 343 ~~lv~~~~~gv~i~~~~~~~G~rg~~s~~l~f~~v~Vp~~~~l~~~~~~~~~~~~~~~~~r~~~~a~~~G~~~~al~~~~ 422 (575)
+|+|+++..|++-.+...++|.+|+...+++|+++.||.+++||.+++|+++.+..++.+|+.+++..+|.++++++.+.
T Consensus 262 ~Flver~~~Gvt~G~~e~k~GiKgsnt~~v~f~~~ki~~envlG~~G~G~kva~nilnsgR~~~aaa~~G~mkr~I~~~~ 341 (634)
T KOG0137|consen 262 AFLVERDFGGVTNGPPEKKMGIKGSNTAEVHFEGVKIPIENVLGKPGDGFKVAMNILNSGRFGMAAALLGLMKRIIEEAA 341 (634)
T ss_pred EEEEeccccCccCCCchhhhcccccceeeeeeccccccHHHhcCCCCcchHHHHHHHccCCcchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy5138 423 PYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAG--QPFIKQASMAKYFASEMAGHITRQCIDWMGG 500 (575)
Q Consensus 423 ~~~~~r~~~g~~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~~~--~~~~~~~~~ak~~~~~~~~~~~~~~~~~~G~ 500 (575)
+|+..|+|||++|.++..+|.++++|...+++.++++|..+..+|+. .+...+.++.|+++.+.++.++.+++|+
T Consensus 342 d~~~~rtQ~g~~L~~~~l~q~k~~~m~~~~Ya~ESm~yl~sg~~D~~~a~d~~lEaai~Ki~a~e~a~~v~se~iqi--- 418 (634)
T KOG0137|consen 342 DYATNRTQFGKKLHDFGLIQEKVAEMASKVYATESMLYLLSGLMDEVGAKDVQLEAAILKIFASEQAWAVVSEAIQI--- 418 (634)
T ss_pred HHhhcceecCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccceeeeehHHHHHHHhhhHHHHHHHhhhhe---
Confidence 99999999999999999999999999999999999999999999883 3457899999999999999999999999
Q ss_pred CCCCcCCcchhhhhhhhcccccccccccccccccccCCChHHHHhhhhccceeccchHHHHHHHHHHHH
Q psy5138 501 LGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNIQLSTIAKYI 569 (575)
Q Consensus 501 ~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~~~~~~~~~~rd~~~~~~~~G~~~~~~~~i~~~~ 569 (575)
+||+||+.++++++++||++.+.|++|+++|++..|+.--
T Consensus 419 -----------------------------~Gg~g~m~d~g~Er~LRD~ri~~I~egtndvLrlfiAltg 458 (634)
T KOG0137|consen 419 -----------------------------VGGMGYMRDTGLERLLRDARILRIFEGTNDVLRLFIALTG 458 (634)
T ss_pred -----------------------------eccccccccCchHHHhhhhheeeeecCchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999998753
No 34
>KOG0139|consensus
Probab=100.00 E-value=2.6e-45 Score=341.97 Aligned_cols=252 Identities=58% Similarity=0.945 Sum_probs=231.7
Q ss_pred CHHHHHHhhhHhhcCCceeEEecCCCCCCCcCCCeeEEEEeCCEEEEeeEEeeeeCCCCCcEEEEEEEecCCCCccceeE
Q psy5138 2 TTEQKEKYLPRLAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGYRGITC 81 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~~~~~a~se~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~t~~~~ad~~~v~a~~~~~~~~~~~~~ 81 (575)
|++||++|+|.+....+++||+|||++|||...+.|+|+++++.|+|||+|.||||+..|++++|++..+...+..++++
T Consensus 135 teeqK~~~~P~~~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWItN~~~A~~~lVfan~d~~~~~Kgit~ 214 (398)
T KOG0139|consen 135 TEEQKEKYLPKLTGDLVGSFALSEPGAGSDAFALKTTAKKDGDDYVINGSKMWITNAGEADWFLVFANADPSKGYKGITC 214 (398)
T ss_pred cHHHHhhhcchhhccccceeeecCCCCCcchHHhhhhHhhcCCeEEEecceeeecCCcccceEEEEEecChhhccCceeE
Confidence 68999999998665558999999999999999999999999999999999999999999999999999887777889999
Q ss_pred EEEecCCCCeEEcccCcccCCCCCCceeEEeeeeEeCCCCcccCCCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5138 82 FIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIP 161 (575)
Q Consensus 82 ~~vp~~~~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~a~~~a~~ 161 (575)
|+||+++||+++....+++|+|++.+|.+.|+||+||.+++||..|.|+++....++.+|++++++++|+++.|+|.++.
T Consensus 215 fiV~rd~~Gl~~~k~eDKLGmRaSsTcql~fedVrVpks~IlGe~G~GykyAm~~Ln~gRIgi~AqmlglaQ~c~d~tI~ 294 (398)
T KOG0139|consen 215 FIVPRDTPGLSLGKKEDKLGMRASSTCQLHFEDVRVPKSSILGEYGKGYKYAIEVLNAGRIGIGAQMLGLAQGCFDETIP 294 (398)
T ss_pred EEeeCCCCCcccCCccccccccccceeeEEeccccccchhhcccCCcchHHHHHhcCccceeehhhhhhhhHhHHHhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcccCccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy5138 162 YTLERSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFASVAKLAKETIAPYVQ 241 (575)
Q Consensus 162 ~a~~r~~~g~~~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 241 (575)
|+++|.+||+++.+||. +||++|++.+++|++|+++|+++++-+.+.++..+.+|.+++. .+.+..
T Consensus 295 Y~q~R~~FGk~l~d~Q~-----iQhqiA~~~teiEaaRlL~ynaAr~k~~G~pf~keAAMAKl~a--se~A~~------- 360 (398)
T KOG0139|consen 295 YAQERLQFGKRLLDFQG-----LQHQIADMATEIEAARLLVYNAARMKDQGLPFVKEAAMAKLYA--SEVATK------- 360 (398)
T ss_pred HHHHHHHhcchhhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhh--hhhhhH-------
Confidence 99999999999999998 9999999999999999999999999999999999999999552 222222
Q ss_pred hchhcCCccHHHHHHHHHhCCCCHHHHHhcccc
Q psy5138 242 KMESEEKIDETVLKTLFESGLGTTEQKEKYLPR 274 (575)
Q Consensus 242 ~~d~~~~~~~~~~~~l~~~G~g~~~~~~~~l~~ 274 (575)
.....++-|+..|+-++--.++|+.+
T Consensus 361 -------~t~qCiq~lGG~Gyt~d~paek~yRD 386 (398)
T KOG0139|consen 361 -------TTHQCIQWLGGVGYTKDFPAEKFYRD 386 (398)
T ss_pred -------HHHHHHHHHhcccccccccHHHHhhh
Confidence 12456778888888777777777766
No 35
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=100.00 E-value=8.9e-44 Score=371.82 Aligned_cols=269 Identities=21% Similarity=0.368 Sum_probs=249.5
Q ss_pred CCHHHHHhcccc-cCCC-------------ceeEEeecCCCCCCccccceeEEEE-eCCEEEEeeeeccccCCccccEEE
Q psy5138 263 GTTEQKEKYLPR-LAQT-------------DAGSFALSEPGSGSDAFAMKTTATK-DGNHYILNGSKMWISNADIANIFL 327 (575)
Q Consensus 263 g~~~~~~~~l~~-~~~~-------------~~~~~~~te~~~gs~~~~~~~~a~~-~~~g~~l~G~k~~~s~~~~a~~~~ 327 (575)
++++|+++|+|+ ++++ .++++++|||..|||+..+.|+|++ ++|+|+|||+|+|+| +..||+++
T Consensus 148 ~~~e~~~~~lp~l~sg~~~~~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~gg~w~LnG~K~fiS-a~~AD~~l 226 (538)
T PRK11561 148 MLPAPFQDWLTPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHKWFFS-VPQSDAHL 226 (538)
T ss_pred cCHHHHHHHHHHHhCCCcccccccchhhhhheeEEEecCCCCCCchhhCeeEEEECCCCeEEEEEEEEEEE-chhhCEEE
Confidence 478999999999 7775 4569999999999999999999999 467899999999999 68999999
Q ss_pred EEEEeCCCCCCCceEEEEEeCCCC-----CeeecccCccCCCCCccceeEEEcceeeCCCCcccCCCchHHHHHHHHhhh
Q psy5138 328 VMANVDVSKGYRGITCFIVERSME-----GFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQG 402 (575)
Q Consensus 328 v~a~~~~~~~~~~~~~~lv~~~~~-----gv~i~~~~~~~G~rg~~s~~l~f~~v~Vp~~~~l~~~~~~~~~~~~~~~~~ 402 (575)
|+|+++ .++++|+||++.| ||++.+.++++|+|++++++|.|+|| .+++||+++.|+..+...++..
T Consensus 227 VlArt~-----~Gls~FlVp~~~p~g~~nGv~i~rl~~klG~r~~~t~ev~f~dv---~~~llG~~g~G~~~i~~~l~~~ 298 (538)
T PRK11561 227 VLAQAK-----GGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASSEVEFQDA---IGWLLGEEGEGIRLILKMGGMT 298 (538)
T ss_pred EEEEEC-----CceEEEEEECCCCCCCCCceEEecccccccCCCCceeEEEECCH---HHHHCCCCCchHHHHHHHHHHH
Confidence 999985 3799999999988 79999999999999999999999999 4789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc------HHHH
Q psy5138 403 RIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQPF------IKQA 476 (575)
Q Consensus 403 r~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~~~~~~------~~~~ 476 (575)
|+..++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.+++++++++++++++.+|.+.+. ....
T Consensus 299 Rl~~a~~a~G~a~~Al~~A~~yA~~R~~FG~~L~~~q~vq~~LAdm~~~ieaar~l~~~aa~~~d~~~~~~~~~~~rl~t 378 (538)
T PRK11561 299 RFDCALGSHGLMRRAFSVAIYHAHQRQVFGKPLIEQPLMRQVLSRMALQLEGQTALLFRLARAWDRRADAKEALWARLFT 378 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999976432 2234
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhcccccccccccccccccccCCChHHHHhhhhccceeccc
Q psy5138 477 SMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEG 556 (575)
Q Consensus 477 ~~ak~~~~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~~~~~~~~~~rd~~~~~~~~G 556 (575)
.++|.++++.+.++++.++|+ |||.||++++++++++||++...|++|
T Consensus 379 ~~aK~~~~e~a~~v~~~Amqv--------------------------------~GG~Gy~ee~~lerl~RDa~v~~I~eG 426 (538)
T PRK11561 379 PAAKFVICKRGIPFVAEAMEV--------------------------------LGGIGYCEESELPRLYREMPVNSIWEG 426 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--------------------------------cCCccCCCCcHHHHHHHHHhhhhcccC
Confidence 578999999999999999999 999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhh
Q psy5138 557 TSNIQLSTIAKYIAKE 572 (575)
Q Consensus 557 ~~~~~~~~i~~~~~~~ 572 (575)
+++|++..+.|.+.+.
T Consensus 427 t~~i~~ldv~r~l~~~ 442 (538)
T PRK11561 427 SGNIMCLDVLRVLNKQ 442 (538)
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999998763
No 36
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=100.00 E-value=2e-42 Score=356.90 Aligned_cols=285 Identities=22% Similarity=0.285 Sum_probs=243.5
Q ss_pred HHHHHHHhhhHHHhchhcCCccHHHHHHHHHhCC----------------------------------------------
Q psy5138 229 AKLAKETIAPYVQKMESEEKIDETVLKTLFESGL---------------------------------------------- 262 (575)
Q Consensus 229 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~---------------------------------------------- 262 (575)
+++. +.+.+++.+.|+.+.||.+.|+.|.+.||
T Consensus 4 ~~~~-~~~~~~a~~~d~~~~~p~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~ 82 (377)
T cd01163 4 RPLA-ARIAEGAAERDRQRGLPYEEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHFGFVEA 82 (377)
T ss_pred HHHH-HHHhhhhhhhhhcCCCCHHHHHHHHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 3444 45888899999999999999999999997
Q ss_pred ----CCHHHHHhcccc-cCCCceeEEeecCCCCCCccccceeEEEEeCCEEEEeeeeccccCCccccEEEEEEEeCCCCC
Q psy5138 263 ----GTTEQKEKYLPR-LAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKG 337 (575)
Q Consensus 263 ----g~~~~~~~~l~~-~~~~~~~~~~~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a~~~~~~~ 337 (575)
|+++|+++|+++ +.|+. .+.+++||+.++ .....+++.++++||+|||+|.|+|++.+|||++|.+++++
T Consensus 83 l~~~g~~~~~~~~l~~~~~g~~-~~~a~tE~~~~~-~~~~~~~~~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~~--- 157 (377)
T cd01163 83 LLLAGPEQFRKRWFGRVLNGWI-FGNAVSERGSVR-PGTFLTATVRDGGGYVLNGKKFYSTGALFSDWVTVSALDEE--- 157 (377)
T ss_pred HHhcCcHHHHHHHHHHHhCCCe-EEEeecCCCCCC-CCCceEEEEecCCEEEEeceEEeecCCccceEEEEEEEcCC---
Confidence 899999999999 67764 456999998775 55667778888999999999999999999999999998652
Q ss_pred CCceEEEEEeCCCCCeeecccCccCCCCCccceeEEEcceeeCCCCcccCCCchHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy5138 338 YRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGC 417 (575)
Q Consensus 338 ~~~~~~~lv~~~~~gv~i~~~~~~~G~rg~~s~~l~f~~v~Vp~~~~l~~~~~~~~~~~~~~~~~r~~~~a~~~G~~~~a 417 (575)
.+..+|+||++.|||++.++|+++||++++++++.|+||+||++++++.++.++. ....+...++.+++.++|+++++
T Consensus 158 -~~~~~~lV~~~~~Gv~i~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~lg~~~~g~~-~~~~~~~~~l~~aa~~lG~a~~a 235 (377)
T cd01163 158 -GKLVFAAVPTDRPGITVVDDWDGFGQRLTASGTVTFDNVRVEPDEVLPRPNAPDR-GTLLTAIYQLVLAAVLAGIARAA 235 (377)
T ss_pred -CcEEEEEEeCCCCceeecCCcccccCccCCcceEEEeeEEECHHHccCCCccccc-cccccHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999999999999998877754 22344567899999999999999
Q ss_pred HHHHHHHhhhcc-ccCc----cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------------CcHHHHHHHH
Q psy5138 418 LDATIPYTLERS-QFGH----RIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQ------------PFIKQASMAK 480 (575)
Q Consensus 418 l~~~~~~~~~r~-~~g~----~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~~~~------------~~~~~~~~ak 480 (575)
++.+++|+++|+ +||+ ++.++|.+|++|++|.++++++|++++++++.++.+. .....++++|
T Consensus 236 l~~~~~~~~~R~~~~g~~~~~~~~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~~~aK 315 (377)
T cd01163 236 LDDAVAYVRSRTRPWIHSGAESARDDPYVQQVVGDLAARLHAAEALVLQAARALDAAAAAGTALTAEARGEAALAVAAAK 315 (377)
T ss_pred HHHHHHHHHhcCCCCCcCCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHH
Confidence 999999999995 7775 5789999999999999999999999999999887641 1234677999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhcccc
Q psy5138 481 YFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGH 521 (575)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~ 521 (575)
+++++.+.++++.+++++|+.|+.+++|++|+|||+++...
T Consensus 316 ~~~~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rd~~~~~~ 356 (377)
T cd01163 316 VVVTRLALDATSRLFEVGGASATAREHNLDRHWRNARTHTL 356 (377)
T ss_pred HHHHHHHHHHHHHHHHHhCchhhccccCCcchhhhhhhhhc
Confidence 99999999999999999666666666666666666666544
No 37
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=100.00 E-value=4.4e-42 Score=369.39 Aligned_cols=280 Identities=26% Similarity=0.388 Sum_probs=252.8
Q ss_pred CCHHHHHhcccc-cCCCceeEEeecCCCCCCccccceeEEEEeC--CEEEEe-----eeeccccCCcc-ccEEEEEEEeC
Q psy5138 263 GTTEQKEKYLPR-LAQTDAGSFALSEPGSGSDAFAMKTTATKDG--NHYILN-----GSKMWISNADI-ANIFLVMANVD 333 (575)
Q Consensus 263 g~~~~~~~~l~~-~~~~~~~~~~~te~~~gs~~~~~~~~a~~~~--~g~~l~-----G~k~~~s~~~~-a~~~~v~a~~~ 333 (575)
|+++|+++||++ ..++.++|+++|||++|||+.+++|+|++++ ++|+|| |+|+|++|++. |++++|+|++.
T Consensus 117 Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d~~t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl~ 196 (610)
T cd01150 117 GTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYDPLTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLI 196 (610)
T ss_pred CCHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEECCCCCeEEECCCCCCceEECccCcccCCCEEEEEEEec
Confidence 699999999999 8899999999999999999999999999998 899999 99999999864 99999999987
Q ss_pred CCCCCCceEEEEEeCC-------CCCeeecccCccCCCCCccceeEEEcceeeCCCCcccC----------------CCc
Q psy5138 334 VSKGYRGITCFIVERS-------MEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISG----------------VGE 390 (575)
Q Consensus 334 ~~~~~~~~~~~lv~~~-------~~gv~i~~~~~~~G~rg~~s~~l~f~~v~Vp~~~~l~~----------------~~~ 390 (575)
.++++.|+++|+||.+ .|||++.+.++++|+++.+++.+.||||+||.+++|+. ++.
T Consensus 197 ~~g~~~Gv~~FlVp~rd~~~~~~~pGV~i~~~~~k~G~~g~dng~l~Fd~vrVP~~nlL~~~~~v~~~G~~~~~~~~~~~ 276 (610)
T cd01150 197 TPGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMGLNGVDNGFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNK 276 (610)
T ss_pred cCCCCCCeEEEEEeccccccCCCCCCeEEeecccccCCCCCCeEEEEEeeeEecHHHhcccccccCCCCceecCCCchhh
Confidence 5555678999999952 39999999999999999999999999999999999976 556
Q ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhccccCcc-------CccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5138 391 GYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHR-------IFDFQSVQHQISQAATQVECARLLTYNAA 463 (575)
Q Consensus 391 ~~~~~~~~~~~~r~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~-------l~~~~~~~~~la~~~~~~~aar~~~~~a~ 463 (575)
++......+..+|+.+++.++|+++++++++++|+..|+|||.| |.++|.+|++|+++.+..++.+.......
T Consensus 277 g~~~~~~~~~~gRl~ia~~a~g~~~~al~iAi~Ya~~R~qfg~~~~~~e~~I~~~q~~q~rL~~~la~~~a~~~~~~~l~ 356 (610)
T cd01150 277 RYGAMLGTRSGGRVGLIYDAAMSLKKAATIAIRYSAVRRQFGPKPSDPEVQILDYQLQQYRLFPQLAAAYAFHFAAKSLV 356 (610)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHeeeecCCCCCCCcchhhccHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888999999999999999999999999999999999998 99999999999999999998775444332
Q ss_pred -------HHHHcCC-----CcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhcccccccccccccc
Q psy5138 464 -------RLLEAGQ-----PFIKQASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMG 531 (575)
Q Consensus 464 -------~~~~~~~-----~~~~~~~~ak~~~~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~G 531 (575)
..++.+. +....++++|.++++.+.++++.|+++ ||
T Consensus 357 ~~~~~~~~~~~~g~~~~~~~~~~~aa~~K~~~t~~a~~~~~~~rq~--------------------------------~G 404 (610)
T cd01150 357 EMYHEIIKELLQGNSELLAELHALSAGLKAVATWTAAQGIQECREA--------------------------------CG 404 (610)
T ss_pred HHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------hc
Confidence 2333332 234678899999999999999999999 99
Q ss_pred cccccCCChHHHHhhhhccceeccchHHHHHHHHHHHHHhhhc
Q psy5138 532 GLGFTKDYPQEKYYRDCKVGTIYEGTSNIQLSTIAKYIAKEYT 574 (575)
Q Consensus 532 g~g~~~~~~~~~~~rd~~~~~~~~G~~~~~~~~i~~~~~~~~~ 574 (575)
|+||+.+++++++++|++...++||+|+|+++++++.+++.|.
T Consensus 405 G~Gy~~~~~l~~l~~d~~~~~t~EG~n~vl~~~iar~ll~~~~ 447 (610)
T cd01150 405 GHGYLAMNRLPTLRDDNDPFCTYEGDNTVLLQQTANYLLKKYA 447 (610)
T ss_pred CccchhhcChHHHHhhccceeeeecchHhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998874
No 38
>PLN02443 acyl-coenzyme A oxidase
Probab=100.00 E-value=5.2e-41 Score=360.59 Aligned_cols=280 Identities=23% Similarity=0.324 Sum_probs=249.2
Q ss_pred CCHHHHHhcccc-cCCCceeEEeecCCCCCCccccceeEEEEe--CCEEEEe-----eeeccccCC-ccccEEEEEEEeC
Q psy5138 263 GTTEQKEKYLPR-LAQTDAGSFALSEPGSGSDAFAMKTTATKD--GNHYILN-----GSKMWISNA-DIANIFLVMANVD 333 (575)
Q Consensus 263 g~~~~~~~~l~~-~~~~~~~~~~~te~~~gs~~~~~~~~a~~~--~~g~~l~-----G~k~~~s~~-~~a~~~~v~a~~~ 333 (575)
|+++|+++||++ .+++.++|+++|||++|||+.+++|+|+++ +++|+|| |+|+|++|+ ..|++++|+|++.
T Consensus 114 GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~efvIntP~~~g~K~wig~~~~~A~~~vV~Arl~ 193 (664)
T PLN02443 114 GTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLI 193 (664)
T ss_pred CCHHHHHHHHHHHhCCChheEEEecCCCcccchhhCeEEEEEeCCCCEEEECCCCCCEEEEeecCCcccCCEEEEEEEEC
Confidence 799999999999 889999999999999999999999999998 6899998 999999997 6899999999987
Q ss_pred CCCCCCceEEEEEeCC-------CCCeeecccCccCC---CCCccceeEEEcceeeCCCCcccCCC------chH-----
Q psy5138 334 VSKGYRGITCFIVERS-------MEGFSVGKKENKLG---MKASGTCSLHFDNVRVPEENIISGVG------EGY----- 392 (575)
Q Consensus 334 ~~~~~~~~~~~lv~~~-------~~gv~i~~~~~~~G---~rg~~s~~l~f~~v~Vp~~~~l~~~~------~~~----- 392 (575)
.++++.|+++|+||.+ .|||++.+.++++| +++.+++.+.|+||+||.+++|+..+ ...
T Consensus 194 ~~~~~~Gv~~FlVp~r~~~~~~~~PGV~vgd~g~K~G~~~~~~~dng~l~Fd~VrVP~~nlLg~~~~v~~~G~~~~~~~~ 273 (664)
T PLN02443 194 TNGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGAYNTMDNGFLRFDHVRIPRDQMLMRLSKVTREGKYVQSDVP 273 (664)
T ss_pred CCCCCCCeEEEEEecCCcCcCCCCCCeEEeccccccCcccCCCCcceEEEeCcEEECHHHcCCcccccCCCCceecccch
Confidence 6556678999999965 79999999999999 55688999999999999999997532 211
Q ss_pred -HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCc--cchh-----HHHHHHHHHHHHHHHHHHHHHHHH
Q psy5138 393 -KIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIF--DFQS-----VQHQISQAATQVECARLLTYNAAR 464 (575)
Q Consensus 393 -~~~~~~~~~~r~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~l~--~~~~-----~~~~la~~~~~~~aar~~~~~a~~ 464 (575)
......+...|+.+++.++|+++++++++++|+..|+|||.|++ ++|. +|++|+++.+.+++++.+.+++++
T Consensus 274 ~~~~~~~l~~~R~~i~a~a~g~~~~Al~iAvrYa~~R~QFg~~~~~~e~qii~y~~~Q~rL~~~la~~~a~r~~~~~a~~ 353 (664)
T PLN02443 274 RQLVYGTMVYVRQTIVADASTALSRAVCIATRYSAVRRQFGSQDGGPETQVIDYKTQQSRLFPLLASAYAFRFVGEWLKW 353 (664)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEeCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23446678889999999999999999999999999999999887 4444 599999999999999999999988
Q ss_pred HHHc------CCC------cHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhccccccccccccccc
Q psy5138 465 LLEA------GQP------FIKQASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGG 532 (575)
Q Consensus 465 ~~~~------~~~------~~~~~~~ak~~~~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg 532 (575)
.+++ ..+ ....++++|.++++.+.++++.|+++ |||
T Consensus 354 ~~~~~~~~~~~~~~~~~~e~h~~aa~~Ka~~t~~a~~~i~~~rq~--------------------------------cGG 401 (664)
T PLN02443 354 LYTDVTQRLEANDFSTLPEAHACTAGLKSLTTSATADGIEECRKL--------------------------------CGG 401 (664)
T ss_pred HHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------ccC
Confidence 7653 111 22347899999999999999999999 999
Q ss_pred ccccCCChHHHHhhhhccceeccchHHHHHHHHHHHHHhhhc
Q psy5138 533 LGFTKDYPQEKYYRDCKVGTIYEGTSNIQLSTIAKYIAKEYT 574 (575)
Q Consensus 533 ~g~~~~~~~~~~~rd~~~~~~~~G~~~~~~~~i~~~~~~~~~ 574 (575)
+||+.+++++++++|+....+++|+|+++++++++.+++.|.
T Consensus 402 ~Gy~~~~~l~~l~~d~~~~~t~EGdn~Vl~~~iar~ll~~~~ 443 (664)
T PLN02443 402 HGYLCSSGLPELFAVYVPACTYEGDNVVLLLQVARFLMKTVS 443 (664)
T ss_pred ccccccCcHHHHHhhhhcceeecCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988773
No 39
>KOG0140|consensus
Probab=100.00 E-value=2.3e-41 Score=309.83 Aligned_cols=217 Identities=43% Similarity=0.676 Sum_probs=205.8
Q ss_pred CHHHHHHhhhHhhcCC-ceeEEecCCCCCCCcCCCeeEEEEeCCEEEEeeEEeeeeCCCCCcEEEEEEEecCC---CCcc
Q psy5138 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVS---KGYR 77 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~-~~~~a~se~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~t~~~~ad~~~v~a~~~~~---~~~~ 77 (575)
|++||++||++++... +.++|+|||++|||...+.|++++.+|.|+|||+|.||||+.+|+|++|++|++++ ++..
T Consensus 125 neeqKkk~lg~l~~~p~~asYcvTEPgAGSDvagikTka~KkGDeYiiNGsKawItg~G~anwyfVlaRtd~~pk~p~~K 204 (408)
T KOG0140|consen 125 NEEQKKKYLGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKKGDEYIINGSKAWITGAGHANWYFVLARTDPDPKTPAGK 204 (408)
T ss_pred cHHHHHhhhhhhhcchhhhhhhccCCCCCcchhhhhhhhhhcCCEEEEcCceeeeecCCccceEEEEEecCCCCCCCCCc
Confidence 6899999999999988 58899999999999999999999999999999999999999999999999999875 4456
Q ss_pred ceeEEEEecCCCCeEEcccCcccCCCCCCceeEEeeeeEeCCCCcccCCCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy5138 78 GITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLD 157 (575)
Q Consensus 78 ~~~~~~vp~~~~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~a~~ 157 (575)
.+..|+|+.++||++..+...++|.|.+++-.|+|+||+||.+|+||.++.||++.+..++-.|..+++.++|+++++++
T Consensus 205 aft~fiVe~dTpGlt~GkKE~nmGqr~sdTR~itFEDvrVP~~Nvlg~~G~GFkvAm~~fd~tRp~vAa~alG~A~r~ld 284 (408)
T KOG0140|consen 205 AFTAFIVEGDTPGLTRGKKEKNMGQRCSDTRGITFEDVRVPKENVLGAPGAGFKVAMGGFDKTRPNVAAGALGLAQRCLD 284 (408)
T ss_pred ceEEEEEeCCCCCcCcChhhhcccccCCCCceeeeeecccchhccccCCCccceehhhhccCCCCchhhhhhHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcccCccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHH
Q psy5138 158 ATIPYTLERSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAK 223 (575)
Q Consensus 158 ~a~~~a~~r~~~g~~~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 223 (575)
.+.+|+.+|++||.||.+||. +|..|++|.+.++.+|++.+++++.+|.+..-+.-.++.+
T Consensus 285 ~a~ky~~eRK~FG~~iA~hQ~-----vqF~LAdMA~~le~aRL~~~~aa~evd~~r~~sy~aSiAK 345 (408)
T KOG0140|consen 285 EATKYALERKAFGTPIANHQA-----VQFMLADMAINLELARLMTRNAAWEVDNGRRNSYYASIAK 345 (408)
T ss_pred HHHHHHHHHHHhCcChhhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 999999999999999999999 9999999999999999999999999998765556666665
No 40
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=100.00 E-value=1.3e-40 Score=342.50 Aligned_cols=293 Identities=18% Similarity=0.221 Sum_probs=250.7
Q ss_pred HHHhhhHHHhchhcCCccHHHHHHHHHhCC--------------------------------------------------
Q psy5138 233 KETIAPYVQKMESEEKIDETVLKTLFESGL-------------------------------------------------- 262 (575)
Q Consensus 233 ~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~-------------------------------------------------- 262 (575)
.+.+++.+.+.|+.+.||.+.++.|.+.||
T Consensus 7 ~~~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~~~~~~~~~~ 86 (370)
T cd01159 7 APLIRERAPEAERARRLPDEVVRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVATHSRMLAAF 86 (370)
T ss_pred HHHHHHhHHHHHHcCCCCHHHHHHHHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHhC
Confidence 345889999999999999999999999997
Q ss_pred CCHHHHHhcccccCCCceeEEeecCCCCCCccccceeEEEEeCCEEEEeeeeccccCCccccEEEEEEEeCCCCCCCceE
Q psy5138 263 GTTEQKEKYLPRLAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGYRGIT 342 (575)
Q Consensus 263 g~~~~~~~~l~~~~~~~~~~~~~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a~~~~~~~~~~~~ 342 (575)
++++|++.|++...+ ..++..++.++|+++++||+|||+|.|+|++.++||++|.++++++++..+++
T Consensus 87 ~~~~~~~~~~~~~~~------------~~~g~~~~~t~A~~~~~gy~lnG~K~~it~~~~ad~~~v~a~~~~~~~~~~~~ 154 (370)
T cd01159 87 PPEAQEEVWGDGPDT------------LLAGSYAPGGRAERVDGGYRVSGTWPFASGCDHADWILVGAIVEDDDGGPLPR 154 (370)
T ss_pred CHHHHHHHhCCCCCc------------eEEeeecCCceeEEeCCeEEEeccccCccCCCcCceeEeeeECCCCCCCCcce
Confidence 455555555543210 01122356788999999999999999999999999999999986544556789
Q ss_pred EEEEeCCCCCeeecccCccCCCCCccceeEEEcceeeCCCCcccCCC------chHH---HHHHHHhhhHHHHHHHHHHH
Q psy5138 343 CFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVG------EGYK---IAAGFLNQGRIGIAAQMTGL 413 (575)
Q Consensus 343 ~~lv~~~~~gv~i~~~~~~~G~rg~~s~~l~f~~v~Vp~~~~l~~~~------~~~~---~~~~~~~~~r~~~~a~~~G~ 413 (575)
+|+||++ ||++.+.|+.+||++++++++.|+||+||++++|+..+ .++. +.......+++.++++++|+
T Consensus 155 ~~lV~~~--Gv~~~~~~~~~G~r~~~s~~v~f~~v~Vp~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~aa~~lG~ 232 (370)
T cd01159 155 AFVVPRA--EYEIVDTWHVVGLRGTGSNTVVVDDVFVPEHRTLTAGDMMAGDGPGGSTPVYRMPLRQVFPLSFAAVSLGA 232 (370)
T ss_pred EEEEEhH--HCEEecccccccccccCCCcEEEcceEcCccceecccccccCCCCCCCCccccCchHHHHHHHHHHHHHHH
Confidence 9999998 99999999999999999999999999999999997532 2311 22345567789999999999
Q ss_pred HHHHHHHHHHHhhhcccc---CccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----C---cHHHHHHHHHH
Q psy5138 414 AQGCLDATIPYTLERSQF---GHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQ-----P---FIKQASMAKYF 482 (575)
Q Consensus 414 ~~~al~~~~~~~~~r~~~---g~~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~~~~-----~---~~~~~~~ak~~ 482 (575)
++++++.+++|+++|.+| |+|++++|.+|++|++|.+.++++|++++++++.++.+. . ....++++|.+
T Consensus 233 a~~~l~~~~~~~~~R~~~~~~g~~i~~~~~v~~~la~~~~~l~~a~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~aK~~ 312 (370)
T cd01159 233 AEGALAEFLELAGKRVRQYGAAVKMAEAPITQLRLAEAAAELDAARAFLERATRDLWAHALAGGPIDVEERARIRRDAAY 312 (370)
T ss_pred HHHHHHHHHHHhccCcccCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 999999999999999987 678999999999999999999999999999999887641 1 13467889999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhcccccccccccccccccccCCChHHHHhhhhccceeccchH-HHH
Q psy5138 483 ASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTS-NIQ 561 (575)
Q Consensus 483 ~~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~~~~~~~~~~rd~~~~~~~~G~~-~~~ 561 (575)
+++.+.++++.++++ +||.||..+++++|+|||++...+++|++ +++
T Consensus 313 ~~e~~~~~~~~a~~~--------------------------------~Gg~g~~~~~~l~r~~Rd~~~~~~~~~~~~~~~ 360 (370)
T cd01159 313 AAKLSAEAVDRLFHA--------------------------------AGGSALYTASPLQRIWRDIHAAAQHAALNPETA 360 (370)
T ss_pred HHHHHHHHHHHHHHh--------------------------------cCchhcccCCcHHHHHHHHHHHhhhhccCcchH
Confidence 999999999999999 99999999999999999999999999999 999
Q ss_pred HHHHHHHHHh
Q psy5138 562 LSTIAKYIAK 571 (575)
Q Consensus 562 ~~~i~~~~~~ 571 (575)
+..|+|.+|+
T Consensus 361 ~~~~~~~~l~ 370 (370)
T cd01159 361 AEAYGRALLG 370 (370)
T ss_pred HHHHHHHhcC
Confidence 9999999875
No 41
>KOG0141|consensus
Probab=100.00 E-value=1.6e-40 Score=304.52 Aligned_cols=230 Identities=40% Similarity=0.637 Sum_probs=213.3
Q ss_pred CHHHHHHhhhHhhcCC-ceeEEecCCCCCCCcCCCeeEEEEeCCEEEEeeEEeeeeCCCCCcEEEEEEEecCC--CCccc
Q psy5138 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVS--KGYRG 78 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~-~~~~a~se~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~t~~~~ad~~~v~a~~~~~--~~~~~ 78 (575)
|++||++|||++.+|+ +++++||||++|||...+.+.|++++++|+|||.|.||||++.||.++|.|+++.. +...+
T Consensus 141 seeQkekylPkl~sGe~iGalAMsEp~AGSDvv~mK~~Aek~g~~yiLNGsK~witNG~~advliVyAkTd~~a~~~~hG 220 (421)
T KOG0141|consen 141 SEEQKEKYLPKLISGEHIGALAMSEPGAGSDVVSMKLKAEKKGDDYILNGSKFWITNGPDADVLIVYAKTDHSAVPPSHG 220 (421)
T ss_pred CHHHHHhhhhhhhcccccceeeecCCCCCCccceeeeeceecCCcEEecCcEEEEecCCCCcEEEEEEecCCCCCCCcCc
Confidence 6899999999999999 79999999999999999999999999999999999999999999999999999865 55678
Q ss_pred eeEEEEecCCCCeEEcccCcccCCCCCCceeEEeeeeEeCCCCcccCCCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy5138 79 ITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDA 158 (575)
Q Consensus 79 ~~~~~vp~~~~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~a~~~ 158 (575)
+++|+|+...||+......+++|||++++|++.|+|.+||+++++|.++.|+-+++.-++..|+.+++..+|+++.+++.
T Consensus 221 It~FiVEkgm~GFs~~~KLdKlGmrgsdTcELvFed~~vpas~ilg~enkGvYvlMsgLd~ERLvla~gplglmqa~~d~ 300 (421)
T KOG0141|consen 221 ITAFIVEKGMPGFSTAQKLDKLGMRGSDTCELVFEDCKVPASNILGEENKGVYVLMSGLDLERLVLAAGPLGLMQAALDE 300 (421)
T ss_pred eEEEEEcCCCcccccchhhHhhcCCCCcchheehhhccCcHHHhcCcCCceEEEEecCCChhHhhhccCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcccCccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhhh
Q psy5138 159 TIPYTLERSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFASVAKLAKETIAP 238 (575)
Q Consensus 159 a~~~a~~r~~~g~~~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 238 (575)
+..|++.|++||++++.||. +|.++|+|++.+.+.|+.++..++.-|.+.-.+.+-....+| +.+...++.-.
T Consensus 301 ~~~Y~~qR~afgk~ig~fQ~-----~QgklAdmyT~l~a~Rsyvy~va~~~d~g~~~~kdcag~il~--aaE~~tqVald 373 (421)
T KOG0141|consen 301 TFPYAHQRKAFGKKIGHFQL-----LQGKLADMYTTLCASRSYVYNVARACDAGNVDPKDCAGVILY--AAEKATQVALD 373 (421)
T ss_pred hhhHHHHHHHhCCchhHHHH-----HHhHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhhhh--HhhhhHHHHHH
Confidence 99999999999999999999 999999999999999999999999999887767776666644 33455554433
No 42
>KOG1469|consensus
Probab=100.00 E-value=7.5e-39 Score=288.15 Aligned_cols=277 Identities=32% Similarity=0.521 Sum_probs=257.5
Q ss_pred CCHHHHHhcccc-cCCCceeEEeecCCC-CCCccccceeEEEEeCCEEEEeeeeccccCCcc--ccEEEEEEEeCCC--C
Q psy5138 263 GTTEQKEKYLPR-LAQTDAGSFALSEPG-SGSDAFAMKTTATKDGNHYILNGSKMWISNADI--ANIFLVMANVDVS--K 336 (575)
Q Consensus 263 g~~~~~~~~l~~-~~~~~~~~~~~te~~-~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~--a~~~~v~a~~~~~--~ 336 (575)
|+++|+.+||.+ +.|+...||++|||+ +.||..+.++..+++++.|+|||+|+|+||+.+ |.+++++.+++.. +
T Consensus 96 GseeQks~WL~PLLeG~irScFaMTEP~VASSDATNIe~SI~r~~~~YvINg~KWw~sga~~PkCrv~i~mGkt~~~~~~ 175 (392)
T KOG1469|consen 96 GSEEQKSQWLIPLLEGNIRSCFAMTEPDVASSDATNIECSIRRDGDSYVINGKKWWISGAGDPKCRIAIFMGKTDNTSAS 175 (392)
T ss_pred CCHHHHhhHhHHHhcCCceeeEeecCCcccccccccceEEEEEcCCEEEEecceeeecCCCCCceEEEEEecccCCCccc
Confidence 899999999999 999999999999999 788999999999999999999999999999954 7889999999865 4
Q ss_pred CCCceEEEEEeCCCCCeeecccCccCCCCCc--cceeEEEcceeeCCCCcccCCCchHHHHHHHHhhhHHHHHHHHHHHH
Q psy5138 337 GYRGITCFIVERSMEGFSVGKKENKLGMKAS--GTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLA 414 (575)
Q Consensus 337 ~~~~~~~~lv~~~~~gv~i~~~~~~~G~rg~--~s~~l~f~~v~Vp~~~~l~~~~~~~~~~~~~~~~~r~~~~a~~~G~~ 414 (575)
.+...++.|||+++|||+|..+..++|.... +..+++|+||+||..+++-.++.||.+.+..+..+|+..|.-.+|.+
T Consensus 176 rhkQqSmiLVpM~TpGvkiiRpltVfG~~DapgGH~Ei~F~~VrVP~~NmlLGeGrGFEIaQGRLGPGRiHHcMRliG~a 255 (392)
T KOG1469|consen 176 RHKQQSMILVPMNTPGVKIIRPLTVFGYTDAPGGHFEIHFENVRVPATNMLLGEGRGFEIAQGRLGPGRIHHCMRLIGLA 255 (392)
T ss_pred hhhcccEEEEecCCCCeeEeeeeeeeccccCCCCcceEEEEEEEeeccceeecCCCcceeeccccCCcHHHHHHHHhhHH
Confidence 4567899999999999999999999998754 36799999999999999988899999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHHHHHHH
Q psy5138 415 QGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQ--PFIKQASMAKYFASEMAGHITR 492 (575)
Q Consensus 415 ~~al~~~~~~~~~r~~~g~~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~~~~--~~~~~~~~ak~~~~~~~~~~~~ 492 (575)
+++++...+.+..|..||+++..+..+.+.||+...+++.+|+++.+++..+|.-. ....+.+|.|+.+..++.++.+
T Consensus 256 ERal~lm~~R~~sRiaFgk~l~q~~s~~~diA~sRveiEqaRLLvLkAAh~mD~~G~k~Ak~~iAMiKv~AP~ma~kilD 335 (392)
T KOG1469|consen 256 ERALQLMKERALSRIAFGKKLVQHGSVAHDIAESRVEIEQARLLVLKAAHSMDTLGNKGAKKEIAMIKVAAPNMASKILD 335 (392)
T ss_pred HHHHHHHHHHHHHHHHhcchhhhcchHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcchhhhhheeeeeecCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998743 3456889999999999999999
Q ss_pred HHHhhcCCCCCCcCCcchhhhhhhhcccccccccccccccccccCCChHHHHhhhhccceeccchHHHHHHHHHHHHHh
Q psy5138 493 QCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNIQLSTIAKYIAK 571 (575)
Q Consensus 493 ~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~~~~~~~~~~rd~~~~~~~~G~~~~~~~~i~~~~~~ 571 (575)
.++|. +||.|.+.++++..+|.-++...+.+|+.+++...|+...++
T Consensus 336 ~AiQ~--------------------------------~G~aG~s~~~~la~l~~~~r~lriadgPd~vhL~ai~~le~~ 382 (392)
T KOG1469|consen 336 RAIQV--------------------------------QGGAGVSSDTPLANLYAIARVLRIADGPDEVHLSAIAKLELR 382 (392)
T ss_pred HHHHH--------------------------------hcCCCCCCCceeeEEEEEeeeEEeccCCCccchhhhhhhhHH
Confidence 99999 999999999999999999999999999999999999987654
No 43
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=1.7e-35 Score=303.88 Aligned_cols=203 Identities=25% Similarity=0.364 Sum_probs=187.6
Q ss_pred CHHHHHHhhhHhhcCC-ceeEEecCCCCCCCcCCCeeEEEEeCCEEEEeeEEeeeeCCCCCcEEEEEEEecCC-CCccce
Q psy5138 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVS-KGYRGI 79 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~-~~~~a~se~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~t~~~~ad~~~v~a~~~~~-~~~~~~ 79 (575)
+++||++|||.+++|+ ++++++|||++|+|...+.|++++++++|+|||+|.|||++..||+++|+++++++ +++.++
T Consensus 102 ~~~qk~~~L~~l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~g~~~~l~G~K~~vt~a~~Ad~~lv~ar~~~~~~~~~g~ 181 (378)
T TIGR03203 102 SAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNGETADTLIVTARTKGARRDRTGI 181 (378)
T ss_pred CHHHHHHHHHHHhCCChhheeeecCCCCCCCcccceEEEEEcCCEEEEEeEEEEecCCccCCEEEEEEecCCCCCCCCce
Confidence 6789999999999999 69999999999999999999999999999999999999999999999999997543 234578
Q ss_pred eEEEEecCCCCeEEcccCcccCCCCCCceeEEeeeeEeCCCCcccCCCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy5138 80 TCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDAT 159 (575)
Q Consensus 80 ~~~~vp~~~~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~a~~~a 159 (575)
++|+||.+.|||++.+.++.+|+ .+++|.||||+||+++++|.+++|+......++..|+.+++.++|+++++++.+
T Consensus 182 ~~flV~~~~~Gv~~~~~~~~~g~---~~~~l~fd~v~vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a 258 (378)
T TIGR03203 182 GVFLVPAGAKGVTIKGYPTQDGL---HAADITFTGVVVGADAAIGDPENALPLIERVVDDARAALCAEAVGLMDESLKTT 258 (378)
T ss_pred EEEEEECCCCCceeccccccCCC---ceeeEEECCCcccHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999776666665 458999999999999999998999999999999999999999999999999999
Q ss_pred HHHhhhhcccCccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy5138 160 IPYTLERSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAG 212 (575)
Q Consensus 160 ~~~a~~r~~~g~~~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~ 212 (575)
++|+++|+|||+||++||. ||+++++|++.++++|++++.+++..+.+
T Consensus 259 ~~ya~~R~qFG~pi~~~Q~-----vq~~lAdm~~~~e~ar~l~~~aa~~~~~~ 306 (378)
T TIGR03203 259 VEYIKTRKQFGVPIGSFQV-----LQHRAADMFVAVEQARSMAMFATMASDFD 306 (378)
T ss_pred HHHHhcCeecCccchhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999 99999999999999999999999887653
No 44
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=100.00 E-value=2.2e-34 Score=298.89 Aligned_cols=217 Identities=41% Similarity=0.674 Sum_probs=198.3
Q ss_pred CHHHHHHhhhHhhcCC-ceeEEecCCCCCCCcCCCeeEEEEeCCEEEEeeEEeeeeCCCCCcEEEEEEEecCCCCcccee
Q psy5138 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGYRGIT 80 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~-~~~~a~se~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~t~~~~ad~~~v~a~~~~~~~~~~~~ 80 (575)
|++||++|+|.+.+|+ ++++++|||++|++...+.+++++++|||+|||+|.|+|++..+|+++|.++.++++++.+++
T Consensus 126 ~~~q~~~~l~~l~~G~~~~~~a~sEp~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~a~~ad~~~v~a~~~~~~~~~~~~ 205 (404)
T PLN02519 126 TPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCTNGPVAQTLVVYAKTDVAAGSKGIT 205 (404)
T ss_pred CHHHHHHHHHHHhCCCeeEEEEecCCCcCCCcccceEEEEEeCCEEEEEeEEEeecCCCcCCEEEEEEEeCCCCCCCeeE
Confidence 6789999999999999 689999999999999899999999999999999999999999999999999976544455788
Q ss_pred EEEEecCCCCeEEcccCcccCCCCCCceeEEeeeeEeCCCCcccCCCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5138 81 CFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATI 160 (575)
Q Consensus 81 ~~~vp~~~~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~a~~~a~ 160 (575)
+|+||.+.|||++.+.|+.+|+++++++++.|+||+||++++++.++.|+......++..++.+++.++|+++++++.++
T Consensus 206 ~~lVp~~~~Gv~~~~~~~~~G~rgt~s~~v~f~~v~Vp~~~~lg~~~~G~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~ 285 (404)
T PLN02519 206 AFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQEGKGVYVMMSGLDLERLVLAAGPLGLMQACLDVVL 285 (404)
T ss_pred EEEEeCCCCCeeccCcccccCCCCCCeeEEEeCeEEecHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888999877778889999999999999999999999
Q ss_pred HHhhhhcccCccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHH
Q psy5138 161 PYTLERSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAK 223 (575)
Q Consensus 161 ~~a~~r~~~g~~~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 223 (575)
+|+++|.+||+|+.++|. +|+++++|.+.+++++++++.+++.++.+.....+....+
T Consensus 286 ~~a~~R~~~g~pl~~~~~-----v~~~la~~~~~l~aar~~~~~aa~~~~~~~~~~~~~~~ak 343 (404)
T PLN02519 286 PYVRQREQFGRPIGEFQF-----IQGKLADMYTSLQSSRSYVYSVARDCDNGKVDRKDCAGVI 343 (404)
T ss_pred HHHHhceeCCccHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 999999999999999988 9999999999999999999999999887654333333333
No 45
>KOG0137|consensus
Probab=100.00 E-value=1.7e-34 Score=287.52 Aligned_cols=444 Identities=29% Similarity=0.428 Sum_probs=310.9
Q ss_pred CHHHHHHhhhHhhcCC-ceeEEecCCCCCCCcCCCeeEEEE--eCCEEEEeeEEeeeeCCCCCcEEEEEEEecCCC----
Q psy5138 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATK--DGNHYILNGSKMWISNADIANIFLVMANVDVSK---- 74 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~-~~~~a~se~~~g~~~~~~~~~a~~--~~~g~~l~G~k~~~t~~~~ad~~~v~a~~~~~~---- 74 (575)
+++||++|||++++|+ +.++|++||.+|||.....|+++. +++.|+|||.|.||+|+..||+++|+|+++.++
T Consensus 176 t~~Qk~kYL~~LaSg~~~~A~altE~s~Gsdaas~~~~a~~s~dg~~y~LNG~Kiwisn~g~Adif~VfAqt~~~~~~g~ 255 (634)
T KOG0137|consen 176 TDEQKQKYLPKLASGKLIAAFALTEPSSGSDAASGRTTATLSPDGKHYVLNGSKIWISNGGLADIFTVFAQTEVDPADGE 255 (634)
T ss_pred CHHHHHHHHHhhhcCCccceEEEecCCCCcccccceeeeeecCCCCeEEEcCeeEEEecCccceeeeeeeccccCCCCcc
Confidence 6899999999999999 699999999999999999999886 678899999999999999999999999987433
Q ss_pred CccceeEEEEecCCCCeEEcccCcccCCCCCCceeEEeeeeEeCCCCcccCCCCcHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy5138 75 GYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQG 154 (575)
Q Consensus 75 ~~~~~~~~~vp~~~~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~ 154 (575)
..++.++|+|+++..||+-.++..++|.++++++.|.|++|.||.+++||.+++|+++.+.+++.+|+..++..+|.+++
T Consensus 256 ~k~k~T~Flver~~~Gvt~G~~e~k~GiKgsnt~~v~f~~~ki~~envlG~~G~G~kva~nilnsgR~~~aaa~~G~mkr 335 (634)
T KOG0137|consen 256 VKRKITAFLVERDFGGVTNGPPEKKMGIKGSNTAEVHFEGVKIPIENVLGKPGDGFKVAMNILNSGRFGMAAALLGLMKR 335 (634)
T ss_pred ccCceEEEEEeccccCccCCCchhhhcccccceeeeeeccccccHHHhcCCCCcchHHHHHHHccCCcchhHHHHHHHHH
Confidence 23678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcccCccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCchHHHHHHHHHHHHHHHH
Q psy5138 155 CLDATIPYTLERSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAG--QPFIKQASMAKYFASVAKLA 232 (575)
Q Consensus 155 a~~~a~~~a~~r~~~g~~~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~a~~~~ 232 (575)
+++.+.+|+..|+|||.++.+|.. +|+++++|...+.+++++++-.+..+|.. .++.-+..+.+++ +.+-+
T Consensus 336 ~I~~~~d~~~~rtQ~g~~L~~~~l-----~q~k~~~m~~~~Ya~ESm~yl~sg~~D~~~a~d~~lEaai~Ki~--a~e~a 408 (634)
T KOG0137|consen 336 IIEEAADYATNRTQFGKKLHDFGL-----IQEKVAEMASKVYATESMLYLLSGLMDEVGAKDVQLEAAILKIF--ASEQA 408 (634)
T ss_pred HHHHHHHHhhcceecCcchhhhhh-----HHHHHHHHHHHHHHHHHHHHHHhcccccccceeeeehHHHHHHH--hhhHH
Confidence 999999999999999999999977 99999999999999999999999988872 3566677777744 22333
Q ss_pred HHHhhhHHHhchhcCCccHHHHHHHHHhCCCCHHHHHhcccccCCCceeEEeecCCCCCCccccce--eEEEEeCCEEEE
Q psy5138 233 KETIAPYVQKMESEEKIDETVLKTLFESGLGTTEQKEKYLPRLAQTDAGSFALSEPGSGSDAFAMK--TTATKDGNHYIL 310 (575)
Q Consensus 233 ~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~g~~~~~~~~l~~~~~~~~~~~~~te~~~gs~~~~~~--~~a~~~~~g~~l 310 (575)
..++ .+.++-++.+|+-.+.-.++.|.+++- +.+-| .+.|...+- .+..... |-.+
T Consensus 409 ~~v~--------------se~iqi~Gg~g~m~d~g~Er~LRD~ri-----~~I~e--gtndvLrlfiAltg~q~a-g~~l 466 (634)
T KOG0137|consen 409 WAVV--------------SEAIQIVGGMGYMRDTGLERLLRDARI-----LRIFE--GTNDVLRLFIALTGLQHA-GKHL 466 (634)
T ss_pred HHHH--------------HhhhheeccccccccCchHHHhhhhhe-----eeeec--CchhHHHHHHHHHHHHhh-hHHH
Confidence 3332 455566666776555555555554211 11222 112221110 0000000 0000
Q ss_pred eeeeccccCCccccEEEEEEEeCCCCCCCceEEEEEeCCCCCeeecccCccCCCCCccceeEEEcceeeCCCCcccCCCc
Q psy5138 311 NGSKMWISNADIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGE 390 (575)
Q Consensus 311 ~G~k~~~s~~~~a~~~~v~a~~~~~~~~~~~~~~lv~~~~~gv~i~~~~~~~G~rg~~s~~l~f~~v~Vp~~~~l~~~~~ 390 (575)
+..++ .-..++..+++- +..+.....|. ++ .+.|..+..|.
T Consensus 467 ~~~~r---~~kn~n~gli~~-----------------------~~~~~~~~~g~-~~---~~~ls~hvhps--------- 507 (634)
T KOG0137|consen 467 ATGVR---ALKNANPGLIGG-----------------------KVSRLRSLRGP-GT---GLYLSEHVHPS--------- 507 (634)
T ss_pred HHHHH---HhhcCCcchhcc-----------------------hhhhhhhccCC-Cc---ccccccccCHH---------
Confidence 00000 000000001100 00000000110 00 11122221111
Q ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy5138 391 GYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQ 470 (575)
Q Consensus 391 ~~~~~~~~~~~~r~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~~~~ 470 (575)
+..++.++-.+-..+..+++-.-. ..|+.+.+.|.+.++||+..+.++++-+.+.+|.+.+..+.
T Consensus 508 -------------L~~saq~~e~~~~~~~~~Ve~ll~--k~~k~iv~~q~~l~rlA~~~~~iYam~a~isRASrS~~igl 572 (634)
T KOG0137|consen 508 -------------LQDSAQKLESSLARFQQVVEKLLT--KHGKGIVEEQSVLQRLANVAINIYAMVAVISRASRSYSIGL 572 (634)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHH--HhccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhcCC
Confidence 112222222222233333332222 24678889999999999999999999999999999999886
Q ss_pred C-cHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCc-CCcchhhhhhhhcccccccccccccccccccCCChHH
Q psy5138 471 P-FIKQASMAKYFASEMAGHITRQCIDWMGGLGFTK-DYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQE 542 (575)
Q Consensus 471 ~-~~~~~~~ak~~~~~~~~~~~~~~~~~~G~~~~~~-~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~~~~~~~ 542 (575)
+ ...+...+..+|++...++-..+-++.++ ++.. +..|.+.=+-+ +.--||...+|++
T Consensus 573 ~~aDhEl~~at~~C~ea~~~~~~~l~~~~~~-~~~~~d~~i~~~sk~v-------------~e~gg~~~~~pl~ 632 (634)
T KOG0137|consen 573 PNADHELALATAICSEASLRVLRWLWAASSG-HVVNLDRNIVSLSKTV-------------LEKGGYITEHPLE 632 (634)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhccc-chhhhcHHHHHHHHHH-------------HhcCCeEEeccCC
Confidence 5 46789999999999999999998888555 3222 22232222222 6667788888765
No 46
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=100.00 E-value=4.4e-34 Score=295.03 Aligned_cols=208 Identities=43% Similarity=0.709 Sum_probs=195.5
Q ss_pred CHHHHHHhhhHhhcCC-ceeEEecCCCCCCCcCCCeeEEEEeCCEEEEeeEEeeeeCCCCCcEEEEEEEecCCCCcccee
Q psy5138 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGYRGIT 80 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~-~~~~a~se~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~t~~~~ad~~~v~a~~~~~~~~~~~~ 80 (575)
+++||++|++++++|+ ++++++|||..|++...+.++++++++||+|||+|.|+|++..||+++|.+++++++++.+++
T Consensus 100 ~~~~~~~~l~~l~~G~~~~~~a~sEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~~~~~~~~ 179 (376)
T cd01156 100 SAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGPDADTLVVYAKTDPSAGAHGIT 179 (376)
T ss_pred CHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhCeEEEEEeCCEEEEEEEEEEecCCCcCCEEEEEEEeCCCCCCCceE
Confidence 6789999999999999 689999999999999999999999999999999999999999999999999976544445688
Q ss_pred EEEEecCCCCeEEcccCcccCCCCCCceeEEeeeeEeCCCCcccCCCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5138 81 CFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATI 160 (575)
Q Consensus 81 ~~~vp~~~~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~a~~~a~ 160 (575)
+|+||.+.|||++.+.|+.+|++++++++|.|+||+||++++++..+.|+......+.+.++.+++.++|+++++++.++
T Consensus 180 ~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~aa~~lG~a~~al~~~~ 259 (376)
T cd01156 180 AFIVEKGMPGFSRAQKLDKLGMRGSNTCELVFEDCEVPEENILGGENKGVYVLMSGLDYERLVLAGGPIGIMQAALDVAI 259 (376)
T ss_pred EEEEcCCCCCeecCCccccccCCCCCceEEEeCceEecHHHcCCCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988999888888999999999999999999999999
Q ss_pred HHhhhhcccCccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy5138 161 PYTLERSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQP 214 (575)
Q Consensus 161 ~~a~~r~~~g~~~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~~ 214 (575)
+|+++|++||+|+.+||. +|+++++|++.+++++++++.+++.++.+..
T Consensus 260 ~~~~~R~~~g~~i~~~~~-----v~~~la~~~~~l~aar~~~~~aa~~~d~~~~ 308 (376)
T cd01156 260 PYAHQRKQFGQPIGEFQL-----VQGKLADMYTRLNASRSYLYTVAKACDRGNM 308 (376)
T ss_pred HHHHHhHhcCcchHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999998 9999999999999999999999999987654
No 47
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=5.2e-34 Score=294.39 Aligned_cols=216 Identities=29% Similarity=0.388 Sum_probs=195.3
Q ss_pred CHHHHHHhhhHh-hcCC-ceeEEecCCCCCCCcCCCeeEEEEeCCEEEEeeEEeeeeCCCCCcEEEEEEEecCCC-Cccc
Q psy5138 2 TTEQKEKYLPRL-AQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSK-GYRG 78 (575)
Q Consensus 2 ~~~qk~~~l~~~-~~g~-~~~~a~se~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~t~~~~ad~~~v~a~~~~~~-~~~~ 78 (575)
|++||++|++.+ .+|+ ++++++|||+.|+|...+++++++++|||+|||+|.|+||+..||+++|.++++++. ...+
T Consensus 101 ~~~q~~~~l~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~gg~~lnG~K~~is~~~~Ad~~~v~a~~~~~~~~~~~ 180 (381)
T PRK12341 101 SAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKTFITGAKEYPYMLVLARDPQPKDPKKA 180 (381)
T ss_pred CHHHHHHHhHHHhhCCCeEEEEEecCCCCCCchhhCeeEEEEeCCEEEEEeEEEEEcCCccCCEEEEEEEcCCCCCCCCc
Confidence 789999999998 5999 699999999999999999999999999999999999999999999999999976432 2246
Q ss_pred eeEEEEecCCCCeEEcccCcccCCCCCCceeEEeeeeEeCCCCcccCCCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy5138 79 ITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDA 158 (575)
Q Consensus 79 ~~~~~vp~~~~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~a~~~ 158 (575)
+++|+||.+.|||++ .+|+++|+++++++.++|+||+||++++++.++.|+......++..|+.+++.++|+++++++.
T Consensus 181 ~~~~lV~~~~~gv~~-~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~aa~~lG~a~~al~~ 259 (381)
T PRK12341 181 FTLWWVDSSKPGIKI-NPLHKIGWHMLSTCEVYLDNVEVEESDLVGEEGMGFLNVMYNFEMERLINAARSLGFAECAFED 259 (381)
T ss_pred eEEEEEeCCCCceee-cccccccCCCCCceEEEECcEEecHHHcCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999 4699999999999999999999999999999888988777788899999999999999999999
Q ss_pred HHHHhhhhcccCccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHH
Q psy5138 159 TIPYTLERSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAK 223 (575)
Q Consensus 159 a~~~a~~r~~~g~~~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 223 (575)
+++|+++|++||+|+.++|. +|+++++|.+.+++++++++.+++.++.+........+.|
T Consensus 260 ~~~~~~~R~~~g~~i~~~~~-----v~~~la~~~~~~~aar~~~~~a~~~~d~~~~~~~~~~~aK 319 (381)
T PRK12341 260 AARYANQRIQFGKPIGHNQL-----IQEKLTLMAIKIENMRNMVYKVAWQADNGQSLRTSAALAK 319 (381)
T ss_pred HHHHHHhhhCCCccHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 99999999999999999988 9999999999999999999999998887655443444444
No 48
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=100.00 E-value=4.8e-34 Score=294.85 Aligned_cols=217 Identities=40% Similarity=0.636 Sum_probs=196.2
Q ss_pred CHHHHHHhhhHhhcCC-ceeEEecCCCCCCCcCCCeeEEEEeCCEEEEeeEEeeeeCCCCCcEEEEEEEecCCCC---cc
Q psy5138 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKG---YR 77 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~-~~~~a~se~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~t~~~~ad~~~v~a~~~~~~~---~~ 77 (575)
+++||++||+.+.+|+ +.++++|||+.|++...+.+++++++|||+|||+|.|+|++..||+++|+++++++.. ..
T Consensus 98 ~~~q~~~~l~~~~~G~~~~~~a~tEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad~~lv~a~~~~~~~~~~~~ 177 (378)
T cd01157 98 NDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKCPASK 177 (378)
T ss_pred CHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhcCeEEEEEcCCEEEEeeEEEeecCCccCCEEEEEEEeCCcccCCCCC
Confidence 6789999999999999 5889999999999998899999999999999999999999999999999999764321 34
Q ss_pred ceeEEEEecCCCCeEEcccCcccCCCCCCceeEEeeeeEeCCCCcccCCCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy5138 78 GITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLD 157 (575)
Q Consensus 78 ~~~~~~vp~~~~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~a~~ 157 (575)
++++|+||.+.|||++.+.|..+|+++++++++.||||+||.+++++.++.|+......+...|+.+++.++|+++++++
T Consensus 178 ~~~~~lv~~~~~gv~~~~~~~~~G~~~~~s~~~~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~aa~~lG~a~~~l~ 257 (378)
T cd01157 178 AFTGFIVEADTPGIQPGRKELNMGQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAMGAFDKTRPPVAAGAVGLAQRALD 257 (378)
T ss_pred ceEEEEEcCCCCCeeccCcccccCCCCCCceEEEeccEEECHHHcCCCCCchHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999888899888888888899999999999999999
Q ss_pred HHHHHhhhhcccCccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHH
Q psy5138 158 ATIPYTLERSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAK 223 (575)
Q Consensus 158 ~a~~~a~~r~~~g~~~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 223 (575)
.+++|+++|.+||+++.+||. +|+++++|.+.+++++++++.+++.++.+........+.|
T Consensus 258 ~~~~~~~~R~~fg~~i~~~q~-----vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~aK 318 (378)
T cd01157 258 EATKYALERKTFGKLIAEHQA-----VSFMLADMAMKVELARLAYQRAAWEVDSGRRNTYYASIAK 318 (378)
T ss_pred HHHHHHHhccccCccHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 999999999999999999998 9999999999999999999999998877643333333344
No 49
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=100.00 E-value=4.4e-34 Score=294.15 Aligned_cols=216 Identities=35% Similarity=0.531 Sum_probs=196.6
Q ss_pred CHHHHHHhhhHhhcCC-ceeEEecCCCCCCCcCCCeeEEEEeCCEEEEeeEEeeeeCCCCCcEEEEEEEecCC-CCccce
Q psy5138 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVS-KGYRGI 79 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~-~~~~a~se~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~t~~~~ad~~~v~a~~~~~-~~~~~~ 79 (575)
+++||++|||++.+|+ ++++++|||+.|+|..++.+++++++|||+|||+|.|+|++..||+++|+++++++ .+..++
T Consensus 98 ~~~~~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~k~~vs~~~~ad~~lv~a~~~~~~~~~~~~ 177 (372)
T TIGR03207 98 RPEIAKPWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISAADQADAAVVFARTGSEAEGARGI 177 (372)
T ss_pred CHHHHHHHHHHHhCCCeeEEEEecCCCCCcChhhCEEEEEEeCCEEEEEEEEEEEcCCCcCCEEEEEEEcCCCCCCCCce
Confidence 6889999999999998 69999999999999999999999999999999999999999999999999997532 233467
Q ss_pred eEEEEecCCCCeEEcccCcccCCCCCCceeEEeeeeEeCCCCcccCCCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy5138 80 TCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDAT 159 (575)
Q Consensus 80 ~~~~vp~~~~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~a~~~a 159 (575)
++|+||.+.|||++. .|+.+|++++++++|.|+||+||++++++.++.|+......++..++.+++.++|+++++++.+
T Consensus 178 ~~~lVp~~~~gv~~~-~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~a~~~~G~a~~al~~a 256 (372)
T TIGR03207 178 SAFLVPMDLPGITRN-RFDCHGQRAIGRGSIFFENVRVPADHMLGNEGQGFVQVMQGFDFSRALIGLQVLAVARAALDET 256 (372)
T ss_pred EEEEEcCCCCCeecC-cchhccCCCCCeeEEEECceeccHHHcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999974 6999999999999999999999999999988899988888899999999999999999999999
Q ss_pred HHHhhhhcccCccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHH
Q psy5138 160 IPYTLERSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAK 223 (575)
Q Consensus 160 ~~~a~~r~~~g~~~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 223 (575)
++|+++|++||+|+.+||. +|+++++|.+.++++|++++.+++.++.+.....+..+.|
T Consensus 257 ~~~~~~R~~fg~~i~~~q~-----v~~~la~~~~~~~~ar~l~~~aa~~~~~~~~~~~~~~~aK 315 (372)
T TIGR03207 257 WRYVAERQAFGKPLSAFQG-----VSHPLADAETQVEAARLLCLQTLWLKDHGLPHTSEAAMCK 315 (372)
T ss_pred HHHHHhccccCCchhhhHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 9999999999999999998 9999999999999999999999998887654444444444
No 50
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=6.3e-34 Score=293.51 Aligned_cols=216 Identities=28% Similarity=0.396 Sum_probs=194.7
Q ss_pred CHHHHHHhhhHhhcCC-ceeEEecCCCCCCCcCCCeeEEEEeCCEEEEeeEEeeeeCCCCCcEEEEEEEecCCCCcccee
Q psy5138 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGYRGIT 80 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~-~~~~a~se~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~t~~~~ad~~~v~a~~~~~~~~~~~~ 80 (575)
+++||++|||++++|+ ++++++|||+.|++...+.|++++++|||+|||+|.|+|++.+||+++|+++++.+++...++
T Consensus 102 ~~e~~~~~l~~~~~g~~~~~~a~tE~~~gs~~~~~~t~a~~~~~g~~lnG~K~fis~~~~ad~~~v~a~~~~~~~~~~~~ 181 (380)
T PRK03354 102 TQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFITSSAYTPYIVVMARDGASPDKPVYT 181 (380)
T ss_pred CHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCEEEEEEeCCEEEEeeEEEEEcCCCcCCEEEEEEEcCCCCCCCcee
Confidence 6889999999999999 689999999999999999999999999999999999999999999999999975433344678
Q ss_pred EEEEecCCCCeEEcccCcccCCCCCCceeEEeeeeEeCCCCcccCCCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5138 81 CFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATI 160 (575)
Q Consensus 81 ~~~vp~~~~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~a~~~a~ 160 (575)
+|+||.+.|||++. .|+++|+++++++++.|+||+||++++++.++.|+......+...++.+++.++|+++++++.++
T Consensus 182 ~~lv~~~~~gv~~~-~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~ 260 (380)
T PRK03354 182 EWFVDMSKPGIKVT-KLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAA 260 (380)
T ss_pred EEEEECCCCceEec-cccccCCCCCCeEEEEEccEEecHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999986 69999999999999999999999999999888888777777788899999999999999999999
Q ss_pred HHhhhhcccCccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHH
Q psy5138 161 PYTLERSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAK 223 (575)
Q Consensus 161 ~~a~~r~~~g~~~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 223 (575)
+|+++|++||+|+.++|. +|+++++|.+.+++++++++++++..+.+.....+..+.|
T Consensus 261 ~~a~~R~~fg~~i~~~q~-----vq~~la~~~~~~~aar~l~~~aa~~~~~~~~~~~~~~~aK 318 (380)
T PRK03354 261 RYANQRVQFGEAIGRFQL-----IQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCK 318 (380)
T ss_pred HHHHhhhccCccHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHH
Confidence 999999999999999998 9999999999999999999999998877654344444444
No 51
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=100.00 E-value=7.6e-34 Score=292.84 Aligned_cols=217 Identities=40% Similarity=0.607 Sum_probs=197.6
Q ss_pred CHHHHHHhhhHhhcCC-ceeEEecCCCCCCCcCCCeeEEEEeCCEEEEeeEEeeeeCCCCCcEEEEEEEecCC-CCccce
Q psy5138 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVS-KGYRGI 79 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~-~~~~a~se~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~t~~~~ad~~~v~a~~~~~-~~~~~~ 79 (575)
+++||++|+|.+.+|+ ++++++|||.+|+|...+.++++++++||+|||+|.|+|++..||+++|.++++++ +.+.++
T Consensus 96 ~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~Ad~~~v~a~~~~~~~~~~~~ 175 (372)
T cd01160 96 SPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLADVVIVVARTGGEARGAGGI 175 (372)
T ss_pred CHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCeEEEEEeCCEEEEeeEEEEecCCCccCEEEEEEEeCCCCCCCCce
Confidence 6789999999999999 69999999999999998999999999999999999999999999999999997643 234568
Q ss_pred eEEEEecCCCCeEEcccCcccCCCCCCceeEEeeeeEeCCCCcccCCCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy5138 80 TCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDAT 159 (575)
Q Consensus 80 ~~~~vp~~~~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~a~~~a 159 (575)
++|+||.+.|||++.+.|+.+|+++++++++.|+||+||++++|+.++.|+......+...++.+++.++|+++++++.+
T Consensus 176 ~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~~~~~aa~~lG~a~~al~~a 255 (372)
T cd01160 176 SLFLVERGTPGFSRGRKLKKMGWKAQDTAELFFDDCRVPAENLLGEENKGFYYLMQNLPQERLLIAAGALAAAEFMLEET 255 (372)
T ss_pred EEEEEeCCCCCeecCCccccccCCCCCeEEEEecceEccHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999899999999999999999999999999999998889988888888999999999999999999999
Q ss_pred HHHhhhhcccCccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHH
Q psy5138 160 IPYTLERSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAK 223 (575)
Q Consensus 160 ~~~a~~r~~~g~~~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 223 (575)
++|+++|++||+++.+||. +|+++++|.+.+++++++++.+++.++.+.....+..+.|
T Consensus 256 ~~~a~~R~~~g~~i~~~q~-----vq~~la~~~~~~~~a~~~~~~aa~~~~~~~~~~~~~~~aK 314 (372)
T cd01160 256 RNYVKQRKAFGKTLAQLQV-----VRHKIAELATKVAVTRAFLDNCAWRHEQGRLDVAEASMAK 314 (372)
T ss_pred HHHHHhhhccCccHHhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 9999999999999999998 9999999999999999999999998876644333333444
No 52
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=100.00 E-value=1.4e-33 Score=291.71 Aligned_cols=213 Identities=41% Similarity=0.639 Sum_probs=194.7
Q ss_pred CHHHHHHhhhHhhcCC-ceeEEecCCCCCCCcCCCeeEEEEeCCEEEEeeEEeeeeCCCCCcEEEEEEEecCCCCcccee
Q psy5138 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGYRGIT 80 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~-~~~~a~se~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~t~~~~ad~~~v~a~~~~~~~~~~~~ 80 (575)
+++||++|++.+++|+ ++++++|||++|+|+..+.+++++++|||+|||+|.|+|++..||+++|.++++++ .++.
T Consensus 110 ~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~~~~Ad~~lv~ar~~~~---~~~~ 186 (386)
T cd01151 110 SEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWITNSPIADVFVVWARNDET---GKIR 186 (386)
T ss_pred CHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeEEEEEECCEEEEEEEEEeecCCCcCCEEEEEEEECCC---CcEE
Confidence 6789999999999999 68999999999999999999999999999999999999999999999999997642 3577
Q ss_pred EEEEecCCCCeEEcccCcccCCCCCCceeEEeeeeEeCCCCcccCCCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5138 81 CFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATI 160 (575)
Q Consensus 81 ~~~vp~~~~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~a~~~a~ 160 (575)
+|+||.+.|||++.+.|+++|+++++++++.|+||+||++++++. ++|+......+...|+.+++.++|+++++++.++
T Consensus 187 ~flVp~~~~gv~i~~~~~~~G~~g~~s~~v~f~~v~Vp~~~~l~~-~~g~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~ 265 (386)
T cd01151 187 GFILERGMKGLSAPKIQGKFSLRASITGEIVMDNVFVPEENLLPG-AEGLRGPFKCLNNARYGIAWGALGAAEDCYHTAR 265 (386)
T ss_pred EEEEcCCCCCeecCCCCCCcCCCCCceeEEEEccEEeCHHHcCCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999975 4788777778888999999999999999999999
Q ss_pred HHhhhhcccCccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHH
Q psy5138 161 PYTLERSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAK 223 (575)
Q Consensus 161 ~~a~~r~~~g~~~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 223 (575)
+|+++|.+||+|+.++|. +|+++++|.+.++++|++++.+++.++.+.....+..+.|
T Consensus 266 ~~a~~R~~~g~~i~~~q~-----vq~~la~~~~~~eaar~l~~~a~~~~d~~~~~~~~~~~~K 323 (386)
T cd01151 266 QYVLDRKQFGRPLAAFQL-----VQKKLADMLTEIALGLLACLRVGRLKDQGKATPEQISLLK 323 (386)
T ss_pred HHHHhCeecCCchhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 999999999999999988 9999999999999999999999999987654444444444
No 53
>KOG0138|consensus
Probab=100.00 E-value=3.1e-34 Score=262.28 Aligned_cols=214 Identities=38% Similarity=0.594 Sum_probs=197.7
Q ss_pred CHHHHHHhhhHhhcCC-ceeEEecCCCCCCCcCCCeeEEEEeCCE--EEEeeEEeeeeCCCCCcEEEEEEEecCCCCccc
Q psy5138 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNH--YILNGSKMWISNADIANIFLVMANVDVSKGYRG 78 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~-~~~~a~se~~~g~~~~~~~~~a~~~~~g--~~l~G~k~~~t~~~~ad~~~v~a~~~~~~~~~~ 78 (575)
|++||++|||.+++|+ ++||++|||.+|||+..++|+|+.++++ |.|||.|.||+|++.||+++|+||...+ ..
T Consensus 152 SE~QkqkYlPslA~g~~igcfgLTEPn~GSdpsgmeT~At~~e~~ktyklNGsKtWI~nsp~aDl~vvwAr~~t~---n~ 228 (432)
T KOG0138|consen 152 SEEQKQKYLPSLAKGKLIGCFGLTEPNHGSDPSGMETRATYDESNKTYKLNGSKTWITNSPMADLFVVWARCETD---NK 228 (432)
T ss_pred CHHHHhhhhhhhhcCceeeEEeccCCCCCCCcccccceeEEccCCceEEECCeeeeecCCcccceEEEEEecccC---Cc
Confidence 6899999999999999 6999999999999999999999998877 9999999999999999999999998742 34
Q ss_pred eeEEEEecCCCCeEEcccCcccCCCCCCceeEEeeeeEeCCCCcccCCCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy5138 79 ITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDA 158 (575)
Q Consensus 79 ~~~~~vp~~~~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~a~~~ 158 (575)
+--|+|.++.+|++.-....++++|.+.++.|.+|+|+||+++++.. ..++.-....++..|.+++...+|++..+++.
T Consensus 229 I~GFi~~k~~~GL~apkI~gK~sLRas~tG~Ilmd~V~VPeE~~LPg-~~s~qgpf~cLnnaR~giAWg~lGase~c~~~ 307 (432)
T KOG0138|consen 229 IRGFILEKGMRGLSAPKIEGKFSLRASATGMILMDGVEVPEENLLPG-ASSLQGPFGCLNNARYGIAWGALGASEFCLHT 307 (432)
T ss_pred eeeEEEecCCCCCcCCCcCCeeeeeecccCceeecCCcCChhhcCCC-ccccCCchhhhhhhhhheeehhchhHHHHHHH
Confidence 66799999999999988999999999999999999999999999943 34555567788999999999999999999999
Q ss_pred HHHHhhhhcccCccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHH
Q psy5138 159 TIPYTLERSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKY 224 (575)
Q Consensus 159 a~~~a~~r~~~g~~~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 224 (575)
+..|+.+|+|||+|+..+|. +|.++++|..++...-.+.++..+..|.+...++..++++.
T Consensus 308 arqY~ldRkQFG~PLAanQL-----~Q~Kladmltei~lgl~~clrl~rLkd~g~~tp~qiSl~Kr 368 (432)
T KOG0138|consen 308 ARQYTLDRKQFGRPLAANQL-----IQKKLADMLTEITLGLQACLRLGRLKDQGKATPEQISLLKR 368 (432)
T ss_pred HHHHHHHHHHhCCchhHHHH-----HHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhHHHhh
Confidence 99999999999999999999 99999999999999999999999999999888888888883
No 54
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=100.00 E-value=3.7e-33 Score=287.63 Aligned_cols=206 Identities=42% Similarity=0.719 Sum_probs=193.3
Q ss_pred CHHHHHHhhhHhhcCC-ceeEEecCCCCCCCcCCCeeEEEEeCCEEEEeeEEeeeeCCCCCcEEEEEEEecCCCCcccee
Q psy5138 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGYRGIT 80 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~-~~~~a~se~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~t~~~~ad~~~v~a~~~~~~~~~~~~ 80 (575)
+++||++|+|++.+|+ ++++++|||.+|+|...+.++++++++||+|||+|.|+|++..||+++|+++.+++ +..+++
T Consensus 98 ~~~q~~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad~~~v~a~~~~~-~~~~~~ 176 (375)
T cd01162 98 NDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGDSDVYVVMARTGGE-GPKGIS 176 (375)
T ss_pred CHHHHHHHHHHHhCCCceeEEEecCCCCCCChhhCEEEEEEeCCEEEEEEEEEEecCCCCCCEEEEEEEecCC-CCCceE
Confidence 6789999999999999 68999999999999999999999999999999999999999999999999987542 335678
Q ss_pred EEEEecCCCCeEEcccCcccCCCCCCceeEEeeeeEeCCCCcccCCCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5138 81 CFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATI 160 (575)
Q Consensus 81 ~~~vp~~~~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~a~~~a~ 160 (575)
+|+||.+.|||++.+.|+.+|+++++++++.||||+||++++++.++.|+......+...++.+++.++|+++++++.++
T Consensus 177 ~~lv~~~~~gv~v~~~~~~~g~~~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~lG~a~~al~~~~ 256 (375)
T cd01162 177 CFVVEKGTPGLSFGANEKKMGWNAQPTRAVIFEDCRVPVENRLGGEGQGFGIAMAGLNGGRLNIASCSLGAAQAALDLAR 256 (375)
T ss_pred EEEEeCCCCCeecCCcccccCCCCCCeeEEEECceEecHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888899887778889999999999999999999999
Q ss_pred HHhhhhcccCccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy5138 161 PYTLERSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQ 213 (575)
Q Consensus 161 ~~a~~r~~~g~~~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~ 213 (575)
+|+++|++||+|+.+||. +|+++++|.+++++++++++.+++.++.+.
T Consensus 257 ~~a~~R~~fg~~l~~~~~-----vq~~la~~~~~l~~a~~~~~~a~~~~~~~~ 304 (375)
T cd01162 257 AYLEERKQFGKPLADFQA-----LQFKLADMATELVASRLMVRRAASALDRGD 304 (375)
T ss_pred HHHHhhhccCccHHhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999998 999999999999999999999999988764
No 55
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-33 Score=291.70 Aligned_cols=233 Identities=22% Similarity=0.255 Sum_probs=207.5
Q ss_pred CCHHHHHhcccc-cCCCceeEEeecCCCCCCccccceeEEEEe-CCEEEEeeeeccccCCccccEEEEEEEeCCC----C
Q psy5138 263 GTTEQKEKYLPR-LAQTDAGSFALSEPGSGSDAFAMKTTATKD-GNHYILNGSKMWISNADIANIFLVMANVDVS----K 336 (575)
Q Consensus 263 g~~~~~~~~l~~-~~~~~~~~~~~te~~~gs~~~~~~~~a~~~-~~g~~l~G~k~~~s~~~~a~~~~v~a~~~~~----~ 336 (575)
|+++||++|||+ ++|+.+++++++| +.|||...+.|+|+++ +|+|+|||+|.|+ ++..||+++|++++++. .
T Consensus 117 Gt~eqker~Lp~lasGe~i~A~AltE-~aGSD~a~i~TtA~~~~gg~wvLNG~K~~t-~g~~Ad~~lV~Art~~~~~~~~ 194 (520)
T PTZ00457 117 GSKELKGKYLTAMSDGTIMMGWATEE-GCGSDISMNTTKASLTDDGSYVLTGQKRCE-FAASATHFLVLAKTLTQTAAEE 194 (520)
T ss_pred CCHHHHHHHHHHHhCCCcEEEEEeCC-CCCCccccceeEEEEcCCCeEEEEEEEEEE-cCchhcEEEEEeecCCcccccc
Confidence 699999999999 8999999999988 8999999999999986 5689999999965 89999999999998531 1
Q ss_pred C---CCceEEEEEeCCCCCeeecccCccCCCCCccceeEEEcceeeCCCCcccCCCchHHHHHHHHhhhHHHHHHHHHHH
Q psy5138 337 G---YRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGL 413 (575)
Q Consensus 337 ~---~~~~~~~lv~~~~~gv~i~~~~~~~G~rg~~s~~l~f~~v~Vp~~~~l~~~~~~~~~~~~~~~~~r~~~~a~~~G~ 413 (575)
+ ..++++|+||+++|||++.+ ++++|||| |.+++||.++.|++..+..++..|+.+++.++|+
T Consensus 195 g~~~~~git~FlV~~dapGVtv~~------------~eV~FddV--P~~~vLG~~g~G~~~a~~~L~~~Rl~~aA~~vGi 260 (520)
T PTZ00457 195 GATEVSRNSFFICAKDAKGVSVNG------------DSVVFENT--PAADVVGVVGEGFKDAMITLFTEQYLYAASLLGI 260 (520)
T ss_pred cccCcCceEEEEEECCCCceEEec------------CEEEECCC--CHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 24689999999999999952 59999997 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHH---HHHHH
Q psy5138 414 AQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQ-PFIKQASMAKYFAS---EMAGH 489 (575)
Q Consensus 414 ~~~al~~~~~~~~~r~~~g~~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~~~~-~~~~~~~~ak~~~~---~~~~~ 489 (575)
++++++.+++|++ +|.+|++|++|.++++++|+++|.+++.+|.+. +...+++++|+|++ +.+++
T Consensus 261 a~~ale~av~ya~-----------~QaVq~~LAdma~~ieAarsl~y~AA~~~D~g~~d~~~eAa~ak~~~s~~~e~~~~ 329 (520)
T PTZ00457 261 MKRVVQELRGSNA-----------EEGATDTVASFACAMYAMESTLYALTANLDLPTEDSLLECTLVSAFVQSTTNQLLS 329 (520)
T ss_pred HHHHHHHHHHHHH-----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHhhhhHHHHHH
Confidence 9999999999986 389999999999999999999999999999974 46889999999999 77777
Q ss_pred HHHHHHhhcCCCCCCcCCcchhhhhhhhcccccccccccccccccccCCChHHHHhhhhccceeccchHHHHH
Q psy5138 490 ITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNIQL 562 (575)
Q Consensus 490 ~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~~~~~~~~~~rd~~~~~~~~G~~~~~~ 562 (575)
++++++| .++|+++++||++.+.|++|++++++
T Consensus 330 ~~~~~~~----------------------------------------~~~~~E~~~rd~ri~~i~egs~~~l~ 362 (520)
T PTZ00457 330 ILETATP----------------------------------------PSTTLEKCFANARLFLSMMESRDFLY 362 (520)
T ss_pred Hhhhhcc----------------------------------------CCccHHHHHHHHHHHHHhhhHHHHHH
Confidence 7777744 46678888888888889999999998
No 56
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=3e-33 Score=302.45 Aligned_cols=216 Identities=27% Similarity=0.360 Sum_probs=190.9
Q ss_pred CHHHHHHhhhHhhcCC-ceeEEecCCCCCCCcCCCeeEE-----EEeCC---EEEEeeEEeeeeCCCCCcEEEEEEEecC
Q psy5138 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTA-----TKDGN---HYILNGSKMWISNADIANIFLVMANVDV 72 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~-~~~~a~se~~~g~~~~~~~~~a-----~~~~~---g~~l~G~k~~~t~~~~ad~~~v~a~~~~ 72 (575)
|++||++|||++++|+ +.|+++|||++|||...+.+++ .++++ ||+|||+|.|||++..||+++|++++.+
T Consensus 177 teeQK~~yLp~La~Ge~i~afAlTEP~aGSDaa~i~Tta~~~~a~~dGd~~~g~vLNG~K~~IT~a~~Ad~l~V~ar~~d 256 (777)
T PRK09463 177 TDEQKDHYLPRLARGEEIPCFALTSPEAGSDAGSIPDTGVVCKGEWQGEEVLGMRLTWNKRYITLAPIATVLGLAFKLYD 256 (777)
T ss_pred CHHHHHHHHHHHhCCCceeEEEecCCCcCCCcccccccceeeeeeecCCcccceEEEEEEEeeCCCCccCEEEEEEEecC
Confidence 6899999999999999 7999999999999998887543 34555 6999999999999999999999988532
Q ss_pred -C-----CCccceeEEEEecCCCCeEEcccCcccCCCCCCceeEEeeeeEeCCCCcccCC---CCcHHHHHHhhhHHH-H
Q psy5138 73 -S-----KGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGV---GEGYKIAAGFLNQGR-I 142 (575)
Q Consensus 73 -~-----~~~~~~~~~~vp~~~~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~l~~~---~~g~~~~~~~~~~~~-~ 142 (575)
+ +++.++++|+||.+.|||++.+.+.++|++ ..++++.|+||+||.+++||.. +.||...+..+..+| +
T Consensus 257 p~~~~g~~~~~Git~fLVp~d~pGV~ig~~~~~lG~r-~~~g~v~fddV~VP~d~lLG~~~~~G~G~~~l~~~L~~gR~i 335 (777)
T PRK09463 257 PDGLLGDKEDLGITCALIPTDTPGVEIGRRHFPLNVP-FQNGPTRGKDVFIPLDYIIGGPKMAGQGWRMLMECLSVGRGI 335 (777)
T ss_pred cccccCCCCCCceEEEEEECCCCCeEecccccccCcc-cccceEEeeeeecCHHHhcccccccChHHHHHHHHHHHHHHH
Confidence 1 234578999999999999999999999998 5688999999999999999864 889999999999999 8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHH
Q psy5138 143 GIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMA 222 (575)
Q Consensus 143 ~~~a~~~G~~~~a~~~a~~~a~~r~~~g~~~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 222 (575)
.+++.++|+++++++.+++|+++|+|||+||++||. ||+++++|.+.+++++++.+.+++.+|.+.....+.++.
T Consensus 336 ~laA~avG~ar~al~~Av~YA~~R~QFG~pIg~fQa-----VQ~~LAdma~~~~a~eaar~~~a~~~D~G~~~~~~aA~A 410 (777)
T PRK09463 336 SLPSNSTGGAKLAALATGAYARIRRQFKLPIGKFEG-----IEEPLARIAGNAYLMDAARTLTTAAVDLGEKPSVLSAIA 410 (777)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhcHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 999999999999999999999999999999999999 999999999999999998888888888775444444555
Q ss_pred H
Q psy5138 223 K 223 (575)
Q Consensus 223 ~ 223 (575)
|
T Consensus 411 K 411 (777)
T PRK09463 411 K 411 (777)
T ss_pred H
Confidence 5
No 57
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=3.5e-33 Score=290.56 Aligned_cols=203 Identities=37% Similarity=0.689 Sum_probs=189.5
Q ss_pred CHHHHHHhhhHhhcCC-ceeEEecCCCCCCCcCCCeeEEEEeC-CEEEEeeEEeeeeCCCCCcEEEEEEEecCCCCccce
Q psy5138 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDG-NHYILNGSKMWISNADIANIFLVMANVDVSKGYRGI 79 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~-~~~~a~se~~~g~~~~~~~~~a~~~~-~g~~l~G~k~~~t~~~~ad~~~v~a~~~~~~~~~~~ 79 (575)
+++||++|+|.+++|+ ++++++|||+.|+|...+.|++++++ |||+|||+|.|+||+..||+++|.++++ +++
T Consensus 135 ~~~qk~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~gg~~L~G~K~~vs~a~~Ad~~lv~a~~~-----~~~ 209 (410)
T PTZ00461 135 SPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITNGTVADVFLIYAKVD-----GKI 209 (410)
T ss_pred CHHHHHHHHHHHhCCCeeEEEEecCCCCCCChHHCeEEEEEcCCCeEEEEeEEEeECCCccCCEEEEEEEeC-----Cce
Confidence 6789999999999999 68999999999999999999999875 5899999999999999999999999864 247
Q ss_pred eEEEEecCCCCeEEcccCcccCCCCCCceeEEeeeeEeCCCCcccCCCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy5138 80 TCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDAT 159 (575)
Q Consensus 80 ~~~~vp~~~~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~a~~~a 159 (575)
++|+||.+.|||++.+.|+.+|+++++++++.|+||+||++++|+.++.|+......+...++.+++.++|+++++++.+
T Consensus 210 ~~flVp~~~~Gv~v~~~~~~~G~r~~~~~~l~f~~v~Vp~~~~lg~~g~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a 289 (410)
T PTZ00461 210 TAFVVERGTKGFTQGPKIDKCGMRASHMCQLFFEDVVVPAENLLGEEGKGMVGMMRNLELERVTLAAMAVGIAERSVELM 289 (410)
T ss_pred EEEEEeCCCCCeecCCCCcccCCCCCceEEEEEcceecCHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999998899887777888999999999999999999999
Q ss_pred HHHhhhhcccCccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy5138 160 IPYTLERSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQP 214 (575)
Q Consensus 160 ~~~a~~r~~~g~~~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~~ 214 (575)
++|+++|.+||+|+.+||. +|+++++|+..++++|++++.+++.++.+..
T Consensus 290 ~~ya~~R~~fg~~i~~~q~-----vq~~la~~~~~l~aar~l~~~aa~~~~~~~~ 339 (410)
T PTZ00461 290 TSYASERKAFGKPISNFGQ-----IQRYIAEGYADTEAAKALVYSVSHNVHPGNK 339 (410)
T ss_pred HHHHHhCeecCcCHHhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999998 9999999999999999999999998876543
No 58
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=7.9e-33 Score=286.74 Aligned_cols=206 Identities=31% Similarity=0.537 Sum_probs=189.0
Q ss_pred CHHHHHHhhhHhhcCC-ceeEEecCCC-CCCCcCCCeeEEEEeCCEEEEeeEEeeeeCCCC--CcEEEEEEEecCCC--C
Q psy5138 2 TTEQKEKYLPRLAQTD-AGSFALSEPG-SGSDAFAMKTTATKDGNHYILNGSKMWISNADI--ANIFLVMANVDVSK--G 75 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~-~~~~a~se~~-~g~~~~~~~~~a~~~~~g~~l~G~k~~~t~~~~--ad~~~v~a~~~~~~--~ 75 (575)
+++||++|+|++.+|+ +.++++|||+ .|++...+.+++++++|||+|||+|.|+||+.+ +|+++|++++++++ .
T Consensus 109 ~~~q~~~~l~~l~~G~~~~~~a~tE~~~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~~~~~a~~~~v~a~~~~~~~~~ 188 (394)
T cd01155 109 SEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRKWWSSGAGDPRCKIAIVMGRTDPDGAPR 188 (394)
T ss_pred CHHHHHHHHHHHhCCCeEEEEEeCCCCCCCCchhhCEEEEEEECCEEEEEEEEEEEcCCCCCCCCEEEEEEEeCCCcCCC
Confidence 6789999999999999 5899999997 678988899999999999999999999999954 88999999875432 2
Q ss_pred ccceeEEEEecCCCCeEEcccCcccCCCC--CCceeEEeeeeEeCCCCcccCCCCcHHHHHHhhhHHHHHHHHHHHHHHH
Q psy5138 76 YRGITCFIVERSMEGFSVGKKENKLGMKA--SGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQ 153 (575)
Q Consensus 76 ~~~~~~~~vp~~~~Gv~~~~~~~~~g~~~--~~~~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~ 153 (575)
+.++++|+||.+.|||++.+.|+++|+++ +++++|.|+||+||++++++.++.|+......+...|+..++.++|+++
T Consensus 189 ~~~~~~flVp~~~~Gv~i~~~~~~~G~r~~~t~s~~v~f~dv~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~~a~~lG~a~ 268 (394)
T cd01155 189 HRQQSMILVPMDTPGVTIIRPLSVFGYDDAPHGHAEITFDNVRVPASNLILGEGRGFEIAQGRLGPGRIHHCMRLIGAAE 268 (394)
T ss_pred CCceEEEEEeCCCCCeEeeccccccCCCCCCCCeeEEEEccEEecHHHcCCCCChHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34688999999999999999999999997 6789999999999999999988889988888888999999999999999
Q ss_pred HHHHHHHHHhhhhcccCccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy5138 154 GCLDATIPYTLERSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAG 212 (575)
Q Consensus 154 ~a~~~a~~~a~~r~~~g~~~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~ 212 (575)
++++.+++|+++|++||+|+.++|. +|+++++|.+.++++|++++.+++.++.+
T Consensus 269 ~al~~~~~~~~~R~~fg~~i~~~q~-----vq~~la~~~~~l~aar~l~~~aa~~~~~~ 322 (394)
T cd01155 269 RALELMCQRAVSREAFGKKLAQHGV-----VAHWIAKSRIEIEQARLLVLKAAHMIDTV 322 (394)
T ss_pred HHHHHHHHHHhcCccCCCcHhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999998 99999999999999999999999988864
No 59
>PLN02526 acyl-coenzyme A oxidase
Probab=100.00 E-value=8.8e-33 Score=287.25 Aligned_cols=213 Identities=33% Similarity=0.536 Sum_probs=193.0
Q ss_pred CHHHHHHhhhHhhcCC-ceeEEecCCCCCCCcCCCeeEEEEeCCEEEEeeEEeeeeCCCCCcEEEEEEEecCCCCcccee
Q psy5138 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGYRGIT 80 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~-~~~~a~se~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~t~~~~ad~~~v~a~~~~~~~~~~~~ 80 (575)
+++||++|++++++|+ +.++++|||+.|++...+.+++++++|||+|||+|.|+|++..||+++|.++++++ .+++
T Consensus 126 ~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~gg~~lnG~K~~vs~~~~Ad~~lv~a~~~~~---~~~~ 202 (412)
T PLN02526 126 SEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTTATKVEGGWILNGQKRWIGNSTFADVLVIFARNTTT---NQIN 202 (412)
T ss_pred CHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEEEEeeecCCCccCEEEEEEEeCCC---CCeE
Confidence 5789999999999999 68999999999999999999999999999999999999999999999999997532 3578
Q ss_pred EEEEecCCCCeEEcccCcccCCCCCCceeEEeeeeEeCCCCcccCCCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5138 81 CFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATI 160 (575)
Q Consensus 81 ~~~vp~~~~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~a~~~a~ 160 (575)
+|+||.+.|||++.+.|+++|++++++++|.|+||+||++++++.. .++......+...++.+++.++|+++++++.++
T Consensus 203 ~flV~~~~~Gv~~~~~~~~~G~r~t~s~~v~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~ 281 (412)
T PLN02526 203 GFIVKKGAPGLKATKIENKIGLRMVQNGDIVLKDVFVPDEDRLPGV-NSFQDTNKVLAVSRVMVAWQPIGISMGVYDMCH 281 (412)
T ss_pred EEEEcCCCCCeEcCCCCCccCcCCCCeeEEEEeeEEECHHHhCCCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999754 467777778899999999999999999999999
Q ss_pred HHhhhhcccCccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHH
Q psy5138 161 PYTLERSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAK 223 (575)
Q Consensus 161 ~~a~~r~~~g~~~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 223 (575)
+|+++|.+||+++++||. +|+++++|.+.+++++++++++++.++.+........+.|
T Consensus 282 ~~a~~R~~fg~~i~~~q~-----vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~aK 339 (412)
T PLN02526 282 RYLKERKQFGAPLAAFQI-----NQEKLVRMLGNIQAMFLVGWRLCKLYESGKMTPGHASLGK 339 (412)
T ss_pred HHHHhCeeCCCchhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHH
Confidence 999999999999999998 9999999999999999999999998887654334444444
No 60
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=7.1e-33 Score=298.23 Aligned_cols=213 Identities=31% Similarity=0.430 Sum_probs=185.3
Q ss_pred CHHHHHHhhhHhhcCC-ceeEEecCCCCCCCcCCCeeEEE-----EeCC---EEEEeeEEeeeeCCCCCcEEEEEEEe-c
Q psy5138 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTAT-----KDGN---HYILNGSKMWISNADIANIFLVMANV-D 71 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~-~~~~a~se~~~g~~~~~~~~~a~-----~~~~---g~~l~G~k~~~t~~~~ad~~~v~a~~-~ 71 (575)
|++||++|||++++|+ +.|+++|||++|||..++.++++ ++++ ||+|||+|.|||++..||++++.++. +
T Consensus 176 TeEQK~~yLP~LAsGe~i~afAlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvLNG~K~~IT~A~~Ad~~~v~ar~~d 255 (774)
T PRK13026 176 TQEQKDYWLPRLADGTEIPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLTWDKRYITLAPVATVLGLAFKLRD 255 (774)
T ss_pred CHHHHHhhhHHHhCCCeEEEEEecCCCCCCchhcccceeeeeeeeecCCccccEEEEEEEEeecCccccCEEEEEEEeeC
Confidence 6899999999999999 79999999999999998886654 4565 69999999999999999999887764 3
Q ss_pred CC-----CCccceeEEEEecCCCCeEEcccCcccCCCCCCceeEEeeeeEeCCCCcccCC---CCcHHHHHHhhhHHH-H
Q psy5138 72 VS-----KGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGV---GEGYKIAAGFLNQGR-I 142 (575)
Q Consensus 72 ~~-----~~~~~~~~~~vp~~~~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~l~~~---~~g~~~~~~~~~~~~-~ 142 (575)
++ ++..++++|+||.++|||++.+.++++|++.. ++++.||||+||.+++||.+ +.||...+..++.+| +
T Consensus 256 pd~~~g~~~~~GiT~fLVp~d~pGV~ig~~~~~lG~~~~-~g~v~fdDV~VP~d~lLG~~~~~G~G~~~l~~~L~~gR~i 334 (774)
T PRK13026 256 PDGLLGDKKELGITCALIPTDHPGVEIGRRHNPLGMAFM-NGTTRGKDVFIPLDWIIGGPDYAGRGWRMLVECLSAGRGI 334 (774)
T ss_pred ccccccCCCCCceEEEEEECCCCCeEeeccccccccCcc-cceEEEeeeEccHHHhcCCcccCChHHHHHHHHHHHHHHH
Confidence 22 23457899999999999999998999999864 58999999999999999865 789999999999999 8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccCCChhHHHHHHHHHH---HHHHHHHHHHHHHHHhhcCCCchHHH
Q psy5138 143 GIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACNGGSVQHQISQAVT---QVECARLLTYNAARLLEAGQPFIKQA 219 (575)
Q Consensus 143 ~~~a~~~G~~~~a~~~a~~~a~~r~~~g~~~~~~q~~~~~~vq~~la~~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~ 219 (575)
.+++.++|+++++++.+++|+++|+|||+||++||. ||+++++|.+ .++++|.+++.+. +.+.....+.
T Consensus 335 ~laA~a~G~A~~al~~Av~YA~~R~QFG~pIg~fQ~-----Vq~~LAdma~~~y~lEaaR~l~~~a~---D~G~~~~~~a 406 (774)
T PRK13026 335 SLPALGTASGHMATRTTGAYAYVRRQFGMPIGQFEG-----VQEALARIAGNTYLLEAARRLTTTGL---DLGVKPSVVT 406 (774)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCchHHH
Confidence 999999999999999999999999999999999999 9999999998 7899999988764 4444334444
Q ss_pred HHHH
Q psy5138 220 SMAK 223 (575)
Q Consensus 220 ~~~~ 223 (575)
.+.|
T Consensus 407 A~AK 410 (774)
T PRK13026 407 AIAK 410 (774)
T ss_pred HHHH
Confidence 5555
No 61
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=100.00 E-value=2.8e-32 Score=276.55 Aligned_cols=208 Identities=46% Similarity=0.757 Sum_probs=194.4
Q ss_pred CHHHHHHhhhHhhcCC-ceeEEecCCCCCCCcCCCeeEEEEeCCEEEEeeEEeeeeCCCCCcEEEEEEEecCCC-Cccce
Q psy5138 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSK-GYRGI 79 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~-~~~~a~se~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~t~~~~ad~~~v~a~~~~~~-~~~~~ 79 (575)
|++||++|++.+.+|+ ++++++|||.+|++...+.++++++++||+|||.|.|+|++..+|+++|.++.++++ +..++
T Consensus 53 ~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~~~~~~~~~~~ 132 (327)
T cd00567 53 TEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADLFIVLARTDEEGPGHRGI 132 (327)
T ss_pred CHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEeCCEEEEEEEEEEecCCccCCEEEEEEEeCCCCCCCCce
Confidence 6889999999999998 699999999999999999999999999999999999999999999999999876432 34567
Q ss_pred eEEEEecCCCCeEEcccCcccCCCCCCceeEEeeeeEeCCCCcccCCCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy5138 80 TCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDAT 159 (575)
Q Consensus 80 ~~~~vp~~~~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~a~~~a 159 (575)
.+|+||.+.|||++.+.|+.+|+++++++.+.|+||+||++++++.++.++......+...++.+++.++|+++++++.+
T Consensus 133 ~~~lvp~~~~Gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~aa~~~G~a~~al~~~ 212 (327)
T cd00567 133 SAFLVPADTPGVTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGGFELAMKGLNVGRLLLAAVALGAARAALDEA 212 (327)
T ss_pred EEEEEeCCCCCeEeccccccccCCCCceEEEEECCEEecHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999988888888888899999999999999999999999
Q ss_pred HHHhhhhcccCccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy5138 160 IPYTLERSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQP 214 (575)
Q Consensus 160 ~~~a~~r~~~g~~~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~~ 214 (575)
++|+++|.+||+|+.++|. +|++++++.+.+++++++++.+++.++....
T Consensus 213 ~~~~~~r~~~g~~~~~~~~-----vq~~la~~~~~~~~~~~~~~~a~~~~~~~~~ 262 (327)
T cd00567 213 VEYAKQRKQFGKPLAEFQA-----VQFKLADMAAELEAARLLLYRAAWLLDQGPD 262 (327)
T ss_pred HHHHHhccccCCccccchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999998 9999999999999999999999999887643
No 62
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=100.00 E-value=9.9e-33 Score=287.26 Aligned_cols=207 Identities=42% Similarity=0.764 Sum_probs=191.4
Q ss_pred CHHHHHHhhhHhhcCC-ceeEEecCCCCCCCcCCCeeEEEE--eCCEEEEeeEEeeeeCCCCCcEEEEEEEecC--CCC-
Q psy5138 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATK--DGNHYILNGSKMWISNADIANIFLVMANVDV--SKG- 75 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~-~~~~a~se~~~g~~~~~~~~~a~~--~~~g~~l~G~k~~~t~~~~ad~~~v~a~~~~--~~~- 75 (575)
+++||++|++.+++|+ +.++++|||++|++...+.+++++ +++||+|||+|.|+||+..||+++|.++++. +.+
T Consensus 122 ~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gs~~~~~~t~a~~~~~g~g~~l~G~K~~vs~~~~Ad~~lv~ar~~~~~~~g~ 201 (409)
T cd01161 122 TEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTTAVLSEDGKHYVLNGSKIWITNGGIADIFTVFAKTEVKDATGS 201 (409)
T ss_pred CHHHHHHHhHHHhCCCeeEEEEecCCCCCCChhhCeeEEEEcCCCCEEEEEeEEEeecCCCcCCEEEEEEEcCCCCCCCC
Confidence 5789999999999999 699999999999999999999998 4568999999999999999999999998752 111
Q ss_pred -ccceeEEEEecCCCCeEEcccCcccCCCCCCceeEEeeeeEeCCCCcccCCCCcHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy5138 76 -YRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQG 154 (575)
Q Consensus 76 -~~~~~~~~vp~~~~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~ 154 (575)
+.++++|+||.+.|||++.+.|+.+|+++++++++.|+||+||++++++.+++|+......+...++.+++.++|++++
T Consensus 202 ~~~~~~~flvp~~~~gv~~~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~lG~a~~ 281 (409)
T cd01161 202 VKDKITAFIVERSFGGVTNGPPEKKMGIKGSNTAEVYFEDVKIPVENVLGEVGDGFKVAMNILNNGRFGMGAALIGTMKR 281 (409)
T ss_pred CCCceEEEEEeCCCCCcccCCcccccCCCCCCceEEEeccEEECHHHcCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 2467899999999999999999999999999999999999999999999988999888888999999999999999999
Q ss_pred HHHHHHHHhhhhcccCccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy5138 155 CLDATIPYTLERSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQ 213 (575)
Q Consensus 155 a~~~a~~~a~~r~~~g~~~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~ 213 (575)
+++.+++|+++|++||+|+.++|. +|+++++|.+.++++|++++.+++.++.+.
T Consensus 282 al~~a~~~a~~R~~fg~~l~~~q~-----vq~~la~~~~~~~aar~l~~~a~~~~d~~~ 335 (409)
T cd01161 282 CIEKAVDYANNRKQFGKKIHEFGL-----IQEKLANMAILQYATESMAYMTSGNMDRGL 335 (409)
T ss_pred HHHHHHHHHHhceeCCccHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999998 999999999999999999999999988764
No 63
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=1e-32 Score=286.39 Aligned_cols=217 Identities=46% Similarity=0.750 Sum_probs=197.0
Q ss_pred CHHHHHHhhhHhhcCC-ceeEEecCCCCCCCcCCCe-eEEEEeCCEEEEeeEEeeeeCCCCCcEEEEEEEecCC-CCccc
Q psy5138 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMK-TTATKDGNHYILNGSKMWISNADIANIFLVMANVDVS-KGYRG 78 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~-~~~~a~se~~~g~~~~~~~-~~a~~~~~g~~l~G~k~~~t~~~~ad~~~v~a~~~~~-~~~~~ 78 (575)
+++||++|+|+++.|+ ++|+++|||.+|+|...+. |++++.+|+|+|||+|.|+||+..||+++|+++++++ +...+
T Consensus 109 ~~~q~~~~l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~~g~~~lnG~K~~is~~~~ad~~~v~Ar~~~~~~~~~g 188 (393)
T COG1960 109 TEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQKIWISNAPVADWLLVLARTDPAPGKHKG 188 (393)
T ss_pred CHHHHHHhchhhhCCchhheeeccCCCCCcchhcCceeEEEecCCCEEEEeEEEEEcCCCCCCEEEEEEEcCCcccccCc
Confidence 6899999999999998 7999999999999999987 6677756669999999999999999999999998754 45568
Q ss_pred eeEEEEecC-CCCeEEcccCcccCCCCCCceeEEeeeeEeCCCCcccCCCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy5138 79 ITCFIVERS-MEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLD 157 (575)
Q Consensus 79 ~~~~~vp~~-~~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~a~~ 157 (575)
+++|+||.+ .|||++.+.|...|+++++++++.|+||+||.+++||..+.||......++..|+.+++.++|+++++++
T Consensus 189 is~flV~~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~lig~~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~ 268 (393)
T COG1960 189 ISLFLVPKDLTPGVSVGPILKKMGLRGSATGEVFFDDVRVPAENLLGEEGDGFKIAMETLNVERLGIAAQALGIAEAALE 268 (393)
T ss_pred eEEEEEeCCCCCCeeeccccCcCCcCCCCeeEEEECCeeccHHHcCCcCCchHHHHHHhhchHHHHHHHHHHHHHHHHHH
Confidence 999999999 5999999887655999999999999999999999999889999999999999999999999999999999
Q ss_pred HHHHHhhhhcccCccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHH
Q psy5138 158 ATIPYTLERSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAK 223 (575)
Q Consensus 158 ~a~~~a~~r~~~g~~~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 223 (575)
.+++|+++|++||+++.+||. +|+++++|++++++++++++++++..+.+.....+..+.|
T Consensus 269 ~~~~ya~~R~~fg~~i~~~~~-----vq~~la~~~~~~~a~r~~~~~aa~~~~~~~~~~~~~~~aK 329 (393)
T COG1960 269 EAVAYARERKQFGRPIADFQL-----VQFKLADMAAELEAARLLVLRAAELADAGDDAGAEAAMAK 329 (393)
T ss_pred HHHHHHHHhHhcCCchhhcHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 999999999999999999998 9999999999999999999999998887753334444444
No 64
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=100.00 E-value=2.2e-32 Score=282.29 Aligned_cols=217 Identities=60% Similarity=0.943 Sum_probs=197.6
Q ss_pred CHHHHHHhhhHhhcCC-ceeEEecCCCCCCCcCCCeeEEEEeCCEEEEeeEEeeeeCCCCCcEEEEEEEecCCCCcccee
Q psy5138 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGYRGIT 80 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~-~~~~a~se~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~t~~~~ad~~~v~a~~~~~~~~~~~~ 80 (575)
+++|+++|++.+.+|+ ++++++|||.+|++...+.++++++++||+|||+|.|+|++..||+++|.++.+++++..+++
T Consensus 97 ~~~~~~~~l~~~~~G~~~~~~a~se~~~gs~~~~~~~~a~~~~~g~~l~G~k~~vsg~~~ad~~lv~a~~~~~~~~~~~~ 176 (373)
T cd01158 97 TEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEADFYIVFAVTDPSKGYRGIT 176 (373)
T ss_pred CHHHHHHHHHHHhCCCeEEEEEecCCCCCCCHHHCEeEEEEeCCEEEEeeEEEEEcCCCcCCEEEEEEEcCCCCCCCceE
Confidence 6789999999999998 699999999999998889999999999999999999999999999999999876444445688
Q ss_pred EEEEecCCCCeEEcccCcccCCCCCCceeEEeeeeEeCCCCcccCCCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5138 81 CFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATI 160 (575)
Q Consensus 81 ~~~vp~~~~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~a~~~a~ 160 (575)
+|+||.+.|||++.+.|+.+|+++++++++.|+||+||++++++.++.|+......+...++.+++.++|+++++++.++
T Consensus 177 ~~lvp~~~~gv~i~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~~a~~lG~a~~~l~~~~ 256 (373)
T cd01158 177 AFIVERDTPGLSVGKKEDKLGIRGSSTTELIFEDVRVPKENILGEEGEGFKIAMQTLDGGRIGIAAQALGIAQAALDAAV 256 (373)
T ss_pred EEEEcCCCCCeecCCcccccccCCCCceEEEeCcEEecHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888898888888889999999999999999999999
Q ss_pred HHhhhhcccCccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHH
Q psy5138 161 PYTLERSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAK 223 (575)
Q Consensus 161 ~~a~~r~~~g~~~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 223 (575)
+|+++|.+||.++.++|. +|++++++.+.+++++++++.++..++.+.+...+....|
T Consensus 257 ~~~~~R~~~g~~~~~~~~-----v~~~la~~~~~l~aa~~~~~~aa~~~~~~~~~~~~~~~~k 314 (373)
T cd01158 257 DYAKERKQFGKPIADFQG-----IQFKLADMATEIEAARLLTYKAARLKDNGEPFIKEAAMAK 314 (373)
T ss_pred HHHHhCcccCCcHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 999999999999999988 9999999999999999999999998887654444444444
No 65
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=100.00 E-value=5.5e-32 Score=283.25 Aligned_cols=248 Identities=19% Similarity=0.290 Sum_probs=205.6
Q ss_pred CHHHHHHhhhHhhcCC--------------ceeEEecCCCCCCCcCCCeeEEEE-eCCEEEEeeEEeeeeCCCCCcEEEE
Q psy5138 2 TTEQKEKYLPRLAQTD--------------AGSFALSEPGSGSDAFAMKTTATK-DGNHYILNGSKMWISNADIANIFLV 66 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~--------------~~~~a~se~~~g~~~~~~~~~a~~-~~~g~~l~G~k~~~t~~~~ad~~~v 66 (575)
+++||++|+|++.+|+ ++++++|||++|||+..++|+|++ ++|+|+|||.|+|+| +..||+++|
T Consensus 149 ~~e~~~~~lp~l~sg~~~~~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~gg~w~LnG~K~fiS-a~~AD~~lV 227 (538)
T PRK11561 149 LPAPFQDWLTPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHKWFFS-VPQSDAHLV 227 (538)
T ss_pred CHHHHHHHHHHHhCCCcccccccchhhhhheeEEEecCCCCCCchhhCeeEEEECCCCeEEEEEEEEEEE-chhhCEEEE
Confidence 5789999999999986 368999999999999999999999 567899999999999 689999999
Q ss_pred EEEecCCCCccceeEEEEecCCC-----CeEEcccCcccCCCCCCceeEEeeeeEeCCCCcccCCCCcHHHHHHhhhHHH
Q psy5138 67 MANVDVSKGYRGITCFIVERSME-----GFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGR 141 (575)
Q Consensus 67 ~a~~~~~~~~~~~~~~~vp~~~~-----Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~ 141 (575)
+|+++ .++++|+||.+.| ||++.+.++++|++++++++|.|+|| .+++||.+++|+..+...++..|
T Consensus 228 lArt~-----~Gls~FlVp~~~p~g~~nGv~i~rl~~klG~r~~~t~ev~f~dv---~~~llG~~g~G~~~i~~~l~~~R 299 (538)
T PRK11561 228 LAQAK-----GGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASSEVEFQDA---IGWLLGEEGEGIRLILKMGGMTR 299 (538)
T ss_pred EEEEC-----CceEEEEEECCCCCCCCCceEEecccccccCCCCceeEEEECCH---HHHHCCCCCchHHHHHHHHHHHH
Confidence 99985 3689999999988 79999999999999999999999998 38899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHH
Q psy5138 142 IGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASM 221 (575)
Q Consensus 142 ~~~~a~~~G~~~~a~~~a~~~a~~r~~~g~~~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 221 (575)
+..++.++|+++++++.+++|+++|++||+||.+||. +|++|++|.+++++++++++.+++.++.+.+ ..+..+
T Consensus 300 l~~a~~a~G~a~~Al~~A~~yA~~R~~FG~~L~~~q~-----vq~~LAdm~~~ieaar~l~~~aa~~~d~~~~-~~~~~~ 373 (538)
T PRK11561 300 FDCALGSHGLMRRAFSVAIYHAHQRQVFGKPLIEQPL-----MRQVLSRMALQLEGQTALLFRLARAWDRRAD-AKEALW 373 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccCCCccccCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-hHHHHH
Confidence 9999999999999999999999999999999999998 9999999999999999999999999987642 223233
Q ss_pred HHHHHH-HHHHHHHHhhhHHHhchhcCCccHHHHHHHHHhCCCCHHHHHhcccc
Q psy5138 222 AKYFAS-VAKLAKETIAPYVQKMESEEKIDETVLKTLFESGLGTTEQKEKYLPR 274 (575)
Q Consensus 222 ~~~~~~-a~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~g~~~~~~~~l~~ 274 (575)
.++... ++-++.+.. ..+-.+.++-++..|+-.+.-.++++.+
T Consensus 374 ~rl~t~~aK~~~~e~a----------~~v~~~Amqv~GG~Gy~ee~~lerl~RD 417 (538)
T PRK11561 374 ARLFTPAAKFVICKRG----------IPFVAEAMEVLGGIGYCEESELPRLYRE 417 (538)
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHhcCCccCCCCcHHHHHHHH
Confidence 332221 111222211 1223556666777776444444555544
No 66
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=1.2e-31 Score=277.24 Aligned_cols=223 Identities=25% Similarity=0.401 Sum_probs=190.9
Q ss_pred CHHHHHHhhhHhhcCC-ceeEEecCCCCCCCcCCCeeEEEEeCCEEEEeeEEeeeeCCCCCcEEEEEEEecCCC-Cccce
Q psy5138 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSK-GYRGI 79 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~-~~~~a~se~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~t~~~~ad~~~v~a~~~~~~-~~~~~ 79 (575)
|++||++|||++++|+ +.++++|||++|+|...+.|++++++++|+|||+|.|||++..||+++|.+++++++ +..++
T Consensus 105 ~~~q~~~~L~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~g~~~~LnG~K~~vt~a~~Ad~~lv~a~~~~~~~~~~g~ 184 (395)
T TIGR03204 105 NEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTWTTLAQHADWIFCLCRTDPTAKKQMGI 184 (395)
T ss_pred CHHHHHHHHHHHhCCchheEeEecCCCCCCChhhceEEEEEcCCEEEEeeEEEeecCCccCCeEEEEEEeCCCCCCCCCe
Confidence 6789999999999999 699999999999999999999999999999999999999999999999999875321 23568
Q ss_pred eEEEEecCCCCeEEcccCcccCCCCCCceeEEeeeeEeCCCCcccCCCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy5138 80 TCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDAT 159 (575)
Q Consensus 80 ~~~~vp~~~~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~a~~~a 159 (575)
++|+||.+.|||++.+.....| ++++++|.|+||+||++++++..+.|+......+...++..++ +|+++++++.+
T Consensus 185 ~~flV~~~~~Gv~~~~~~~~~~--~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~g~aa--~g~a~~~l~~a 260 (395)
T TIGR03204 185 SFILVDMKSKGITVRPIQTIDG--GVEVNEVFFDDVEVPYENLVGEENKGWDYAKFLLGNERTGIAR--VGVSKERIRRI 260 (395)
T ss_pred EEEEEeCCCCCeEecChhhccC--CCceeEEEEcceEEcHHHcCCCCCchHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 8999999999999976666655 6778999999999999999998889999888889999988876 79999999999
Q ss_pred HHHhhhhcccCccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCC-CchHHHHHHHHHHHHHHHHHHH
Q psy5138 160 IPYTLERSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLL-EAGQ-PFIKQASMAKYFASVAKLAKET 235 (575)
Q Consensus 160 ~~~a~~r~~~g~~~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~-~~~~-~~~~~~~~~~~~~~a~~~~~~~ 235 (575)
++|+++|++||+||++||. +|+++++|.+.++++|+++++++... +.+. ....+.++.| ..+.+.+.+.
T Consensus 261 ~~ya~~R~~fg~~i~~~q~-----vq~~la~~~~~~~aar~l~~~aa~~~~~~~~~~~~~~aa~aK--~~~~~~~~~~ 331 (395)
T TIGR03204 261 KDLAAKVESGGKPVIEDAK-----FREKLAAVEIELKALELTQLRVVADEGKHGKGKPNPASSVLK--IKGSEIQQAT 331 (395)
T ss_pred HHHHHHHhhcCCccccCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHH--HHHHHHHHHH
Confidence 9999999999999999999 99999999999999999999997533 2222 1234566666 3344444443
No 67
>PLN02636 acyl-coenzyme A oxidase
Probab=100.00 E-value=9e-32 Score=290.84 Aligned_cols=205 Identities=27% Similarity=0.495 Sum_probs=183.8
Q ss_pred CHHHHHHhhhHhhcCC-ceeEEecCCCCCCCcCCCeeEEEEe--CCEEEEe-----eEEeeeeCCCC-CcEEEEEEEecC
Q psy5138 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKD--GNHYILN-----GSKMWISNADI-ANIFLVMANVDV 72 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~-~~~~a~se~~~g~~~~~~~~~a~~~--~~g~~l~-----G~k~~~t~~~~-ad~~~v~a~~~~ 72 (575)
|++||++|||++.+|+ ++|+|+|||++|||+..++|+|+++ +++|+|| |.|+||+|+.. ||+++|+|++..
T Consensus 157 TeeQk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~~defVLntP~~~g~K~wI~na~~~ad~~vV~Arl~~ 236 (686)
T PLN02636 157 TKKHRDKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDPLTDEFVINTPNDGAIKWWIGNAAVHGKFATVFARLKL 236 (686)
T ss_pred CHHHHHHHHHHHhCCChhhhhhccCCCcccCcccCeeEEEEcCCCCeEEECCCCCCeEEEeecCCcccCCEEEEEEEecC
Confidence 6899999999999999 5999999999999999999999998 7899999 99999999975 999999999862
Q ss_pred C------CCccceeEEEEecC-------CCCeEEcccCcccCCCCCCceeEEeeeeEeCCCCcccCC-------------
Q psy5138 73 S------KGYRGITCFIVERS-------MEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGV------------- 126 (575)
Q Consensus 73 ~------~~~~~~~~~~vp~~-------~~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~l~~~------------- 126 (575)
+ +...++++|+||.+ .|||++.+...++|+++.+++.|.||||+||.+++|+..
T Consensus 237 ~~~~~~~~~~~Gi~~FlVp~r~~~~~~~~PGV~v~~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~g~v~~~G~y~~~~ 316 (686)
T PLN02636 237 PTHDSKGVSDMGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVGLNGVDNGALRFRSVRIPRDNLLNRFGDVSRDGKYTSSL 316 (686)
T ss_pred CCCCccCCCCCCeeEEEEecCccccCCCCCCeEeccCCCccCCCCCcceEEEEeeEEECHHHhccccccccCCCcccccC
Confidence 1 12457999999987 699999999999999999999999999999999999532
Q ss_pred ---CCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcc------ccccccCCChhHHHHHHHHHHHHHH
Q psy5138 127 ---GEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHR------IFDFQACNGGSVQHQISQAVTQVEC 197 (575)
Q Consensus 127 ---~~g~~~~~~~~~~~~~~~~a~~~G~~~~a~~~a~~~a~~r~~~g~~------~~~~q~~~~~~vq~~la~~~~~~~~ 197 (575)
+.||......+..+|+.+++.++|+++++++.+++|+..|+|||.| |.+||. +|++|++|.+.+++
T Consensus 317 ~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~qFg~p~~~e~~I~d~q~-----vQ~~La~~la~~~a 391 (686)
T PLN02636 317 PTINKRFAATLGELVGGRVGLAYGSVGVLKASNTIAIRYSLLRQQFGPPKQPEISILDYQS-----QQHKLMPMLASTYA 391 (686)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCEeCCCCCCCCCcccccHH-----HHHHHHHHHHHHHH
Confidence 4688888899999999999999999999999999999999999999 889988 99999999999999
Q ss_pred HH----HHHHHHHHHhhc
Q psy5138 198 AR----LLTYNAARLLEA 211 (575)
Q Consensus 198 ~~----~~~~~a~~~~~~ 211 (575)
++ .+.+.+.+..+.
T Consensus 392 ~~~a~~~l~~~~~~~~~~ 409 (686)
T PLN02636 392 FHFATEYLVERYSEMKKT 409 (686)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 55 566666655543
No 68
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.8e-31 Score=286.71 Aligned_cols=205 Identities=26% Similarity=0.426 Sum_probs=186.4
Q ss_pred CHHHHHHhhhHhhcCC-ceeEEecCCCCCCCcCCCeeEEEEe--CCEEEEe-----eEEeeeeC-CCCCcEEEEEEEecC
Q psy5138 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKD--GNHYILN-----GSKMWISN-ADIANIFLVMANVDV 72 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~-~~~~a~se~~~g~~~~~~~~~a~~~--~~g~~l~-----G~k~~~t~-~~~ad~~~v~a~~~~ 72 (575)
|++||++|||.+.+|+ ++|+++|||++|||+..++|+|+++ +++|+|| |.|+|+++ +..||+++|+|++..
T Consensus 111 T~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~defvLntPt~~g~K~wi~~~g~~A~~~vV~Arl~~ 190 (646)
T PTZ00460 111 TDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEAVKFWPGELGFLCNFALVYAKLIV 190 (646)
T ss_pred CHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEEEcCCCCEEEECCCCCCeEEEccCCCCCCCCEEEEEEEECc
Confidence 6899999999999999 6999999999999999999999985 6889998 99999997 689999999999875
Q ss_pred CCCccceeEEEEecC-------CCCeEEcccCcccCCCCCCceeEEeeeeEeCCCCcccC------CCC----c-HHHHH
Q psy5138 73 SKGYRGITCFIVERS-------MEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISG------VGE----G-YKIAA 134 (575)
Q Consensus 73 ~~~~~~~~~~~vp~~-------~~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~l~~------~~~----g-~~~~~ 134 (575)
+++..++++|+||.+ .|||++.+...++|+++.+++.+.||||+||.+++|+. ++. | +....
T Consensus 191 ~~~~~Gi~~FlV~ird~~~~~~~pGV~vg~~~~k~G~~~~dng~l~Fd~VrVP~~nlLg~~~~v~~~G~~~~~g~~~~~~ 270 (646)
T PTZ00460 191 NGKNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMGYAVKDNGFLSFDHYRIPLDSLLARYIKVSEDGQVERQGNPKVSY 270 (646)
T ss_pred CCCCCceEEEEEeccccCCCCCCCCeEEeccccccCcCCCCceEEEeceEEECHHHhCCcccccCCCCccccCCcHHHHH
Confidence 444567999999942 49999999999999999999999999999999999985 332 4 67777
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCc------cccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5138 135 GFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGH------RIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARL 208 (575)
Q Consensus 135 ~~~~~~~~~~~a~~~G~~~~a~~~a~~~a~~r~~~g~------~~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~ 208 (575)
..+...|+.+++.++|+++++++.+++|++.|+|||+ ||.+||. +|++|++|.+.+++++.+.+++.+.
T Consensus 271 ~~l~~~R~~iaa~~~g~a~~Al~iAvrYa~~R~QFg~~~~~E~pI~~yQ~-----~Q~rLa~~la~~~A~r~~~~~a~~~ 345 (646)
T PTZ00460 271 ASMMYMRNLIIDQYPRFAAQALTVAIRYSIYRQQFTNDNKQENSVLEYQT-----QQQKLLPLLAEFYACIFGGLKIKEL 345 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCCcHhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999999999999999999999999997 8999998 9999999999999999999999988
Q ss_pred hhc
Q psy5138 209 LEA 211 (575)
Q Consensus 209 ~~~ 211 (575)
++.
T Consensus 346 ~~~ 348 (646)
T PTZ00460 346 VDD 348 (646)
T ss_pred HHH
Confidence 764
No 69
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=100.00 E-value=1.8e-31 Score=277.55 Aligned_cols=201 Identities=30% Similarity=0.495 Sum_probs=185.8
Q ss_pred CHHHHHHhhhHhhcCC-----ceeEEecCCCCCCCcCCCeeEEEEe-CCEEEEeeEEeeeeCCCCCcEEEEEEEecCC-C
Q psy5138 2 TTEQKEKYLPRLAQTD-----AGSFALSEPGSGSDAFAMKTTATKD-GNHYILNGSKMWISNADIANIFLVMANVDVS-K 74 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~-----~~~~a~se~~~g~~~~~~~~~a~~~-~~g~~l~G~k~~~t~~~~ad~~~v~a~~~~~-~ 74 (575)
|++| ++|||++++|+ ++|+++|||++|||+..++|+|+++ +|+|+|||+|+|+|++ .||+++|+|+++++ +
T Consensus 128 ~~~~-~~~l~~l~~g~~~~~~~~~~~~TEp~~GSD~~~~~T~A~~~~g~~~~LnG~K~f~s~a-~Ad~~lv~Art~~~~~ 205 (418)
T cd01154 128 PEEL-KQYLPGLLSDRYKTGLLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAP-LADAALVLARPEGAPA 205 (418)
T ss_pred cHHH-HHHHHHHhCCCcccchhheeeecCCCcccchhhCeEEEEECCCCcEEEEEEEEEecCc-ccCEEEEEEECCCCCC
Confidence 4555 57999999994 4899999999999999999999999 8999999999999999 99999999998743 3
Q ss_pred CccceeEEEEecCCC-----CeEEcccCcccCCCCCCceeEEeeeeEeCCCCcccCCCCcHHHHHHhhhHHHHHHHHHHH
Q psy5138 75 GYRGITCFIVERSME-----GFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMT 149 (575)
Q Consensus 75 ~~~~~~~~~vp~~~~-----Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~~a~~~ 149 (575)
++.++++|+||++.| ||++.+.|+++|++++++++|.|+|| .++++|.+++|+......++..|+.+++.++
T Consensus 206 ~~~gls~flVp~~~~~~~~~Gv~i~~~~~~~G~r~~~~~ev~f~dv---~~~~lG~~g~G~~~~~~~l~~~R~~~aa~~~ 282 (418)
T cd01154 206 GARGLSLFLVPRLLEDGTRNGYRIRRLKDKLGTRSVATGEVEFDDA---EAYLIGDEGKGIYYILEMLNISRLDNAVAAL 282 (418)
T ss_pred CCCcEEEEEEeccCCCCCCCCeEecccccccCCCCCCeEEEEecCc---CccccCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999875 99999999999999999999999998 3889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcccCccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy5138 150 GLAQGCLDATIPYTLERSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAG 212 (575)
Q Consensus 150 G~~~~a~~~a~~~a~~r~~~g~~~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~ 212 (575)
|+++++++.+++|+++|++||+++.++|. +|++|++|.+.+++++++++.+++.++..
T Consensus 283 G~a~~al~~a~~ya~~R~~fg~~l~~~~~-----v~~~La~~~~~~eaar~l~~~aa~~~~~~ 340 (418)
T cd01154 283 GIMRRALSEAYHYARHRRAFGKPLIDHPL-----MRRDLAEMEVDVEAATALTFRAARAFDRA 340 (418)
T ss_pred HHHHHHHHHHHHHHhcCcCCCCchhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999988 99999999999999999999999988764
No 70
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=7.9e-31 Score=272.59 Aligned_cols=209 Identities=31% Similarity=0.502 Sum_probs=188.3
Q ss_pred CHHHHHHhhhHhhcCC-ceeEEecCCCCCCCcCCCeeEEEEe-CCEEEEeeEEeeeeCCCCC----cEEEEEEEecC-CC
Q psy5138 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKD-GNHYILNGSKMWISNADIA----NIFLVMANVDV-SK 74 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~-~~~~a~se~~~g~~~~~~~~~a~~~-~~g~~l~G~k~~~t~~~~a----d~~~v~a~~~~-~~ 74 (575)
+++||++|++.+.+|+ +.++++|||++|++...+.|+++++ +|||+|||+|.|+|++.+| ++++|++++++ .+
T Consensus 101 ~~~~~~~~l~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~ggy~l~G~K~~is~~~~a~~~~~~~~v~a~~~~~~~ 180 (407)
T cd01153 101 TEAQREKWIPRLAEGEWTGTMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFISAGEHDMSENIVHLVLARSEGAPP 180 (407)
T ss_pred CHHHHHHHHHHHhCCCeeEEEEecCCCCCCCcccceEEEEECCCCcEEEeeEEEEEeCCCcccccccEEEEEEeCCCCCC
Confidence 6889999999999999 6999999999999999999999998 5789999999999999876 57788888653 22
Q ss_pred CccceeEEEEecCC-----CCeEEcccCcccCCCCCCceeEEeeeeEeCCCCcccCCCCcHHHHHHhhhHHHHHHHHHHH
Q psy5138 75 GYRGITCFIVERSM-----EGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMT 149 (575)
Q Consensus 75 ~~~~~~~~~vp~~~-----~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~~a~~~ 149 (575)
++.++++|+||.+. |||++.+.|+.+|+++++++++.|+||+|| +++.++.|+......+...|+.+++.++
T Consensus 181 ~~~~~~~flVp~~~~~~~~~gv~i~~~~~~~G~r~t~s~~v~f~~v~Vp---~lg~~~~g~~~~~~~l~~~r~~~aa~~l 257 (407)
T cd01153 181 GVKGLSLFLVPKFLDDGERNGVTVARIEEKMGLHGSPTCELVFDNAKGE---LIGEEGMGLAQMFAMMNGARLGVGTQGT 257 (407)
T ss_pred CCCceEEEEEeccCcCCCCCCeEeccchhccCCCCCCeEEEEEcCEEEe---eeCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 33468899999987 899999999999999999999999999999 8888889998888889999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcccCccccccc---cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy5138 150 GLAQGCLDATIPYTLERSQVGHRIFDFQ---ACNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQ 213 (575)
Q Consensus 150 G~~~~a~~~a~~~a~~r~~~g~~~~~~q---~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~ 213 (575)
|+++++++.+++|+++|++||+|+..|| ..+.+.+|+++++|.+++++++++++.+++.++...
T Consensus 258 G~a~~al~~a~~~a~~R~~fg~~i~~~~~~~~~~~~~iq~~la~~~a~~~a~~~~~~~aa~~~d~~~ 324 (407)
T cd01153 258 GLAEAAYLNALAYAKERKQGGDLIKAAPAVTIIHHPDVRRSLMTQKAYAEGSRALDLYTATVQDLAE 324 (407)
T ss_pred HHHHHHHHHHHHHHHhCeecCCcCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999977776 345677999999999999999999999999887653
No 71
>PLN02312 acyl-CoA oxidase
Probab=100.00 E-value=5.2e-31 Score=284.21 Aligned_cols=205 Identities=21% Similarity=0.404 Sum_probs=186.0
Q ss_pred CHHHHHHhhhHhhcCC-ceeEEecCCCCCCCcCCCeeEEEEe--CCEEEEe-----eEEeeeeCC-CCCcEEEEEEEecC
Q psy5138 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKD--GNHYILN-----GSKMWISNA-DIANIFLVMANVDV 72 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~-~~~~a~se~~~g~~~~~~~~~a~~~--~~g~~l~-----G~k~~~t~~-~~ad~~~v~a~~~~ 72 (575)
|++||++|||.+.+|+ ++|+++|||++|||+..++|||+++ +++|+|| |.|+|++|+ ..||+++|+|++..
T Consensus 169 Teeqk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~~~vV~Arl~~ 248 (680)
T PLN02312 169 TKRHHDKWLKDTEDYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQLHI 248 (680)
T ss_pred CHHHHHHHHHHHhCCCeeeEeeecCCCcCcchhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccCCEEEEEEEECC
Confidence 6899999999999999 6999999999999999999999997 5789999 799999998 79999999999875
Q ss_pred CCCccceeEEEEec---C---CCCeEEcccCcccCCCCCCceeEEeeeeEeCCCCcccC----------------CCCcH
Q psy5138 73 SKGYRGITCFIVER---S---MEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISG----------------VGEGY 130 (575)
Q Consensus 73 ~~~~~~~~~~~vp~---~---~~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~l~~----------------~~~g~ 130 (575)
+++..++++|+||. + .|||++.+...++|+++.+++.|.||||+||.+++|+. ++.|+
T Consensus 249 ~~~~~Gv~~FlV~ird~~~~~~PGV~ig~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~~~V~~~G~y~~~~~~~~~gf 328 (680)
T PLN02312 249 NGKNEGVHAFIAQIRDQDGNICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKYVSAIKDPDQRF 328 (680)
T ss_pred CCCCCCeEEEEEeecCCCCCCCCCEEeccCCCcccccCCCceEEEEccEEECHHHhCCccceeCCCCceecCCCCccchH
Confidence 44456789999983 3 89999999999999999999999999999999999983 56788
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCc----c---ccccccCCChhHHHHHHHHHHHHHHHHHHHH
Q psy5138 131 KIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGH----R---IFDFQACNGGSVQHQISQAVTQVECARLLTY 203 (575)
Q Consensus 131 ~~~~~~~~~~~~~~~a~~~G~~~~a~~~a~~~a~~r~~~g~----~---~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~ 203 (575)
......+..+|+.+++.++|+++++++.+++|++.|+|||. | |.+||. +|++|++|.+.+++++....
T Consensus 329 ~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~QFg~~~~~~E~~I~dyq~-----~Q~rLa~~la~~~a~~~~a~ 403 (680)
T PLN02312 329 GAFLAPLTSGRVTIAVSAIYSSKVGLAIAIRYSLSRRAFSVTPNGPEVLLLDYPS-----HQRRLLPLLAKTYAMSFAAN 403 (680)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCCCCCccchHhhhHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999995 4 888988 99999999999999888877
Q ss_pred HHHHHhhc
Q psy5138 204 NAARLLEA 211 (575)
Q Consensus 204 ~a~~~~~~ 211 (575)
.+.+.++.
T Consensus 404 ~l~~~~~~ 411 (680)
T PLN02312 404 DLKMIYVK 411 (680)
T ss_pred HHHHHHhc
Confidence 77776654
No 72
>PLN02876 acyl-CoA dehydrogenase
Probab=99.98 E-value=5e-31 Score=295.44 Aligned_cols=205 Identities=27% Similarity=0.503 Sum_probs=189.3
Q ss_pred CHHHHHHhhhHhhcCC-ceeEEecCCC-CCCCcCCCeeEEEEeCCEEEEeeEEeeeeCC--CCCcEEEEEEEecCC-CCc
Q psy5138 2 TTEQKEKYLPRLAQTD-AGSFALSEPG-SGSDAFAMKTTATKDGNHYILNGSKMWISNA--DIANIFLVMANVDVS-KGY 76 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~-~~~~a~se~~-~g~~~~~~~~~a~~~~~g~~l~G~k~~~t~~--~~ad~~~v~a~~~~~-~~~ 76 (575)
|++||++||+++++|+ +.|+++|||+ +|+|..++.|++++++|||+|||+|.|+|++ ..||+++|+++++++ ++.
T Consensus 534 t~eqk~~~L~~l~~G~~~~~~a~tEp~~~gsd~~~~~t~a~~~g~g~vLnG~K~~vtga~~~~ad~~lv~ar~~~~~~~~ 613 (822)
T PLN02876 534 NKEQQLEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIRRQGDSYVINGTKWWTSGAMDPRCRVLIVMGKTDFNAPKH 613 (822)
T ss_pred CHHHHHHHHHHHhCCCceeEEEecCCCccCcccccceEEEEEcCCEEEEEeEEEEecCCCCCCCCEEEEEEecCCCCCCC
Confidence 6899999999999999 5899999996 7899999999999999999999999999999 579999999987532 223
Q ss_pred cceeEEEEecCCCCeEEcccCcccCCCC--CCceeEEeeeeEeCCCCcccCCCCcHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy5138 77 RGITCFIVERSMEGFSVGKKENKLGMKA--SGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQG 154 (575)
Q Consensus 77 ~~~~~~~vp~~~~Gv~~~~~~~~~g~~~--~~~~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~ 154 (575)
.++++|+||.+.|||++.+.|+++|+++ +++++|.|+||+||++++++.++.|+......+..+|+..++.++|++++
T Consensus 614 ~~~s~flV~~~~pGv~i~~~~~~~G~r~~~~~~~~v~fd~V~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~vG~a~~ 693 (822)
T PLN02876 614 KQQSMILVDIQTPGVQIKRPLLVFGFDDAPHGHAEISFENVRVPAKNILLGEGRGFEIAQGRLGPGRLHHCMRLIGAAER 693 (822)
T ss_pred CcceEEEEeCCCCCceeecccceeccCCCCCCeeEEEEcceeechhheecCCCchHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 5678999999999999998999999997 45889999999999999998888899888888999999999999999999
Q ss_pred HHHHHHHHhhhhcccCccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5138 155 CLDATIPYTLERSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEA 211 (575)
Q Consensus 155 a~~~a~~~a~~r~~~g~~~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~ 211 (575)
+++.+++|+++|++||+++.+||. +|+++++|.+.++++|++++.+++.++.
T Consensus 694 ale~a~~ya~~R~~fg~~i~~~q~-----vq~~la~~~~~leaar~l~~~aa~~~d~ 745 (822)
T PLN02876 694 GMQLMVQRALSRKAFGKLIAQHGS-----FLSDLAKCRVELEQTRLLVLEAADQLDR 745 (822)
T ss_pred HHHHHHHHHHhhhhcCCchhhCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999998 9999999999999999999999999886
No 73
>KOG1469|consensus
Probab=99.97 E-value=1.1e-30 Score=235.48 Aligned_cols=206 Identities=31% Similarity=0.546 Sum_probs=188.6
Q ss_pred CHHHHHHhhhHhhcCCc-eeEEecCCC-CCCCcCCCeeEEEEeCCEEEEeeEEeeeeCCC--CCcEEEEEEEecCCC--C
Q psy5138 2 TTEQKEKYLPRLAQTDA-GSFALSEPG-SGSDAFAMKTTATKDGNHYILNGSKMWISNAD--IANIFLVMANVDVSK--G 75 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~~-~~~a~se~~-~g~~~~~~~~~a~~~~~g~~l~G~k~~~t~~~--~ad~~~v~a~~~~~~--~ 75 (575)
|++||.+||..+++|++ .||++|||+ +.||..++++..+++++-|+|||.|+|+||+. .+.+.+++.+++... .
T Consensus 97 seeQks~WL~PLLeG~irScFaMTEP~VASSDATNIe~SI~r~~~~YvINg~KWw~sga~~PkCrv~i~mGkt~~~~~~r 176 (392)
T KOG1469|consen 97 SEEQKSQWLIPLLEGNIRSCFAMTEPDVASSDATNIECSIRRDGDSYVINGKKWWISGAGDPKCRIAIFMGKTDNTSASR 176 (392)
T ss_pred CHHHHhhHhHHHhcCCceeeEeecCCcccccccccceEEEEEcCCEEEEecceeeecCCCCCceEEEEEecccCCCccch
Confidence 68999999999999995 999999998 68899999999999999999999999999985 466788888887542 3
Q ss_pred ccceeEEEEecCCCCeEEcccCcccCCCC--CCceeEEeeeeEeCCCCcccCCCCcHHHHHHhhhHHHHHHHHHHHHHHH
Q psy5138 76 YRGITCFIVERSMEGFSVGKKENKLGMKA--SGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQ 153 (575)
Q Consensus 76 ~~~~~~~~vp~~~~Gv~~~~~~~~~g~~~--~~~~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~ 153 (575)
+...++.+||+++|||+++++.+.+|... -++.+|.|+||+||..+++-.++.||++.+..+..+|++.|.-.+|.+.
T Consensus 177 hkQqSmiLVpM~TpGvkiiRpltVfG~~DapgGH~Ei~F~~VrVP~~NmlLGeGrGFEIaQGRLGPGRiHHcMRliG~aE 256 (392)
T KOG1469|consen 177 HKQQSMILVPMNTPGVKIIRPLTVFGYTDAPGGHFEIHFENVRVPATNMLLGEGRGFEIAQGRLGPGRIHHCMRLIGLAE 256 (392)
T ss_pred hhcccEEEEecCCCCeeEeeeeeeeccccCCCCcceEEEEEEEeeccceeecCCCcceeeccccCCcHHHHHHHHhhHHH
Confidence 35679999999999999999999988873 4568999999999999999889999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcccCccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy5138 154 GCLDATIPYTLERSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAG 212 (575)
Q Consensus 154 ~a~~~a~~~a~~r~~~g~~~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~ 212 (575)
++++...+.+..|..||+++..+-. +.+.+++...++|.+|+++.+|++.+|..
T Consensus 257 Ral~lm~~R~~sRiaFgk~l~q~~s-----~~~diA~sRveiEqaRLLvLkAAh~mD~~ 310 (392)
T KOG1469|consen 257 RALQLMKERALSRIAFGKKLVQHGS-----VAHDIAESRVEIEQARLLVLKAAHSMDTL 310 (392)
T ss_pred HHHHHHHHHHHHHHHhcchhhhcch-----HHHHHHHHHhHhhhhhhhhhhhhhhhhhh
Confidence 9999999999999999999988865 99999999999999999999999999853
No 74
>KOG0135|consensus
Probab=99.97 E-value=1e-30 Score=257.96 Aligned_cols=280 Identities=26% Similarity=0.440 Sum_probs=247.1
Q ss_pred CCHHHHHhcccc-cCCCceeEEeecCCCCCCccccceeEEEEe--CCEEEEe-----eeeccccCCc-cccEEEEEEEeC
Q psy5138 263 GTTEQKEKYLPR-LAQTDAGSFALSEPGSGSDAFAMKTTATKD--GNHYILN-----GSKMWISNAD-IANIFLVMANVD 333 (575)
Q Consensus 263 g~~~~~~~~l~~-~~~~~~~~~~~te~~~gs~~~~~~~~a~~~--~~g~~l~-----G~k~~~s~~~-~a~~~~v~a~~~ 333 (575)
|++-.++ |+.. -.-+..+||++||.++||+...++|+|+.| .+.|+|| ..|.|+.|++ +|++.+|+++..
T Consensus 140 GT~rH~~-yi~~~~n~ev~gcfamTEl~HGSNt~~I~TtatyDP~t~EfVinTP~~~A~K~WiGn~a~~athavvfa~L~ 218 (661)
T KOG0135|consen 140 GTKRHHD-YIQKTENYEVKGCFAMTELGHGSNTKGIQTTATYDPTTEEFVINTPDFSAIKCWIGNAAKHATHAVVFAQLH 218 (661)
T ss_pred ccHHHHH-HHhhhhcceeeeeEEEeeecCCccccceeeeeeecCCCCeeEecCCcHHHHHHHhccccccceEEEEEEEee
Confidence 8888888 9999 788899999999999999999999999998 6889998 7799999985 699999999998
Q ss_pred CCCCCCceEEEEEeC-------CCCCeeecccCccCCCCCccceeEEEcceeeCCCCcccCC----------------Cc
Q psy5138 334 VSKGYRGITCFIVER-------SMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGV----------------GE 390 (575)
Q Consensus 334 ~~~~~~~~~~~lv~~-------~~~gv~i~~~~~~~G~rg~~s~~l~f~~v~Vp~~~~l~~~----------------~~ 390 (575)
..+...|++.|+||- .-|||+|.|..++.|++|.+++.+.|+||+||.+++|... ++
T Consensus 219 ~~g~n~G~H~FiiqIRdpkT~~t~PgV~igD~G~K~GlnGVDNG~l~F~nvRIPRenLLNr~gDVtpDG~YvSs~k~~~q 298 (661)
T KOG0135|consen 219 VPGQNHGLHGFIIQIRDPKTLQTLPGVRIGDCGHKIGLNGVDNGFLWFDNVRIPRENLLNRFGDVTPDGKYVSSFKDPSQ 298 (661)
T ss_pred ecCccCceeeEEEEeecccccCCCCCceecccccccccccccCceEEEecccCchHHHhhhccCcCCCCeeeccCCChhh
Confidence 777788999999983 2589999999999999999999999999999999998322 12
Q ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhccccC-------ccCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5138 391 GYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFG-------HRIFDFQSVQHQISQAATQVECARLLTYNAA 463 (575)
Q Consensus 391 ~~~~~~~~~~~~r~~~~a~~~G~~~~al~~~~~~~~~r~~~g-------~~l~~~~~~~~~la~~~~~~~aar~~~~~a~ 463 (575)
-+-.....+..+|++++...+|.++-++.++++|...|+||| .+|.++|..|.||--+.+...+.+-...+..
T Consensus 299 rfgA~L~~Ls~GRvgIa~~ai~~lkla~tIAIRYS~sRRQFGP~~~geEv~iLeYp~qQ~RL~P~LAaaya~~fas~~l~ 378 (661)
T KOG0135|consen 299 RFGASLGSLSSGRVGIASSAIGALKLALTIAIRYSLSRRQFGPTKNGEEVPILEYPSQQYRLLPYLAAAYALSFASKYLV 378 (661)
T ss_pred hhchhhcccccchhHHHHHHHHHHHHHHHHhhhhHHhHhhhCCCCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455677889999999999999999999999999999998 3688999999999999998888887777766
Q ss_pred HHHHcC----------CCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhcccccccccccccccc
Q psy5138 464 RLLEAG----------QPFIKQASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGL 533 (575)
Q Consensus 464 ~~~~~~----------~~~~~~~~~ak~~~~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~ 533 (575)
..+.+. .+....++..|.++++...++.++|.+. |||+
T Consensus 379 ~~y~E~~~~~~~~~n~keiHALsSg~K~~~TW~~~~~LqecREA--------------------------------cGGh 426 (661)
T KOG0135|consen 379 MIYVERTPRTNEGVNSKEIHALSSGLKPVATWHNMRALQECREA--------------------------------CGGH 426 (661)
T ss_pred HHHHHHhhhhccccchhHHHHHHhccchhhhHhhHHHHHHHHHH--------------------------------hccc
Confidence 555431 1234556778999999999999999999 9999
Q ss_pred cccCCChHHHHhhhhccceeccchHHHHHHHHHHHHHhhhcC
Q psy5138 534 GFTKDYPQEKYYRDCKVGTIYEGTSNIQLSTIAKYIAKEYTS 575 (575)
Q Consensus 534 g~~~~~~~~~~~rd~~~~~~~~G~~~~~~~~i~~~~~~~~~~ 575 (575)
||..++.++.+--|-..++++||+|.|+.+++++.+|++|.+
T Consensus 427 GYl~~nRlg~Lr~D~D~~~TfEGDNnVLlQqvsn~LL~~y~~ 468 (661)
T KOG0135|consen 427 GYLQENRLGQLRDDHDPFQTFEGDNNVLLQQVSNALLAQYVS 468 (661)
T ss_pred hHHHHHHhcccccCCCccceeecCceeHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999963
No 75
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=99.97 E-value=5.3e-30 Score=264.47 Aligned_cols=200 Identities=23% Similarity=0.305 Sum_probs=175.4
Q ss_pred CHHHHHHhhhHhhcCCceeEEecCCCCCCCcCCCeeEEEEeCCEEEEeeEEeeeeCCCCCcEEEEEEEecCCCCccceeE
Q psy5138 2 TTEQKEKYLPRLAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGYRGITC 81 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~~~~~a~se~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~t~~~~ad~~~v~a~~~~~~~~~~~~~ 81 (575)
+++||++|++.+.+|++++.+++||++++ +..+.+++.++++||+|||+|.|+|++..||+++|.+++++ .+.++
T Consensus 88 ~~~~~~~~l~~~~~g~~~~~a~tE~~~~~-~~~~~~~~~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~~----~~~~~ 162 (377)
T cd01163 88 PEQFRKRWFGRVLNGWIFGNAVSERGSVR-PGTFLTATVRDGGGYVLNGKKFYSTGALFSDWVTVSALDEE----GKLVF 162 (377)
T ss_pred cHHHHHHHHHHHhCCCeEEEeecCCCCCC-CCCceEEEEecCCEEEEeceEEeecCCccceEEEEEEEcCC----CcEEE
Confidence 67899999999999997778999998775 66667777788899999999999999999999999998642 24678
Q ss_pred EEEecCCCCeEEcccCcccCCCCCCceeEEeeeeEeCCCCcccCCCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5138 82 FIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIP 161 (575)
Q Consensus 82 ~~vp~~~~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~a~~~a~~ 161 (575)
|+||.+.|||++.+.|+.+|++++++++|.|+||+||++++++.++.++. ........++.+++.++|+++++++.+++
T Consensus 163 ~lV~~~~~Gv~i~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~lg~~~~g~~-~~~~~~~~~l~~aa~~lG~a~~al~~~~~ 241 (377)
T cd01163 163 AAVPTDRPGITVVDDWDGFGQRLTASGTVTFDNVRVEPDEVLPRPNAPDR-GTLLTAIYQLVLAAVLAGIARAALDDAVA 241 (377)
T ss_pred EEEeCCCCceeecCCcccccCccCCcceEEEeeEEECHHHccCCCccccc-cccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998877764 23345677899999999999999999999
Q ss_pred Hhhhhc-ccCcc----ccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy5138 162 YTLERS-QVGHR----IFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAG 212 (575)
Q Consensus 162 ~a~~r~-~~g~~----~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~ 212 (575)
|+++|+ +||++ +.++|. +|+++++|.++++++|++++.+++.++.+
T Consensus 242 ~~~~R~~~~g~~~~~~~~~~~~-----v~~~la~~~~~l~aar~~~~~aa~~~d~~ 292 (377)
T cd01163 242 YVRSRTRPWIHSGAESARDDPY-----VQQVVGDLAARLHAAEALVLQAARALDAA 292 (377)
T ss_pred HHHhcCCCCCcCCccccccCcH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999995 67753 456666 99999999999999999999999988764
No 76
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=99.97 E-value=9.1e-30 Score=262.73 Aligned_cols=211 Identities=31% Similarity=0.495 Sum_probs=183.0
Q ss_pred CHHHHHHhhhHhhcCC-ceeEEecCCCCCCCcCCCeeEEEEeCCEEEEeeEEeeeeCCCCCcEEEEEEEecCC-CCccce
Q psy5138 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVS-KGYRGI 79 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~-~~~~a~se~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~t~~~~ad~~~v~a~~~~~-~~~~~~ 79 (575)
+++||++||+++.+|+ ++++++|||..|++...+.++++++++||+|||+|.|+|++..+|+++|+++++++ +++.++
T Consensus 101 ~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~L~G~K~~it~~~~ad~~lv~a~~~~~~~~~~~~ 180 (380)
T cd01152 101 TDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAHYADWAWLLVRTDPEAPKHRGI 180 (380)
T ss_pred CHHHHHHHhHHHhCCchhheeecCCCCCCcchhhCeeeEEEcCCeEEEecEEEEEcCccccCEEEEEEEeCCCccCcCCe
Confidence 6789999999999999 69999999999999989999999999999999999999999999999999997542 223468
Q ss_pred eEEEEecCCCCeEEcccCcccCCCCCCceeEEeeeeEeCCCCcccCCCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy5138 80 TCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDAT 159 (575)
Q Consensus 80 ~~~~vp~~~~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~a~~~a 159 (575)
++|+||.+.|||++.+.|+.+| +++++++.|+||+||.+++++.+++|+......+...|+..+ |++.++++.+
T Consensus 181 ~~~lVp~~~~Gv~~~~~~~~~g--~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~~----~~~~~~~~~a 254 (380)
T cd01152 181 SILLVDMDSPGVTVRPIRSING--GEFFNEVFLDDVRVPDANRVGEVNDGWKVAMTTLNFERVSIG----GSAATFFELL 254 (380)
T ss_pred EEEEEeCCCCceEeeehhhccC--CCCcceEEecCcCcchhcccCCCCchHHHHHHHHHhcccccc----hhhhHHHHHH
Confidence 8999999999999999998887 578899999999999999999888899888777777777665 4455556677
Q ss_pred HHHhhhhcccCccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHH
Q psy5138 160 IPYTLERSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAK 223 (575)
Q Consensus 160 ~~~a~~r~~~g~~~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 223 (575)
++|+++|.+||+|+.++|. +|+++++|.+++++++++++.+++.++.+.....+..+.|
T Consensus 255 ~~~a~~r~~~g~~l~~~~~-----vq~~la~~~~~l~~a~~l~~~aa~~~~~~~~~~~~~a~aK 313 (380)
T cd01152 255 LARLLLLTRDGRPLIDDPL-----VRQRLARLEAEAEALRLLVFRLASALAAGKPPGAEASIAK 313 (380)
T ss_pred HHHHHHHHhcCCCcccCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHH
Confidence 8899999999999999998 9999999999999999999999999987654333444444
No 77
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=99.97 E-value=1.1e-29 Score=272.32 Aligned_cols=203 Identities=31% Similarity=0.486 Sum_probs=181.8
Q ss_pred CHHHHHHhhhHhhcCC-ceeEEecCCCCCCCcCCCeeEEEEeCC-EEEEeeEEeeeeCCCCC----cEEEEEEEecCC-C
Q psy5138 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGN-HYILNGSKMWISNADIA----NIFLVMANVDVS-K 74 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~-~~~~a~se~~~g~~~~~~~~~a~~~~~-g~~l~G~k~~~t~~~~a----d~~~v~a~~~~~-~ 74 (575)
|++||++|||++.+|+ ++++++|||++|||+..+.|+++++++ +|+|||+|.|||++.++ ++++|+||+++. +
T Consensus 165 s~eqk~~~Lp~l~sGe~~~t~alTEp~aGSD~~~l~T~A~~~gdG~y~L~G~K~fIt~g~~~~~~n~~~lVlAr~~~~~~ 244 (622)
T PTZ00456 165 SEEQKEQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKITGTKIFISAGDHDLTENIVHIVLARLPNSLP 244 (622)
T ss_pred CHHHHHHHHHHHhcCChhhhhhccCCccCCCcccCeeEEEECCCCcEEEeeEEEEecCCchhhccCcEEEEEEEecCCCC
Confidence 6899999999999999 589999999999999999999999876 59999999999999873 678999998753 3
Q ss_pred CccceeEEEEecCC----------CCeEEcccCcccCCCCCCceeEEeeeeEeCCCCcccCCCCcHHHHHHhhhHHHHHH
Q psy5138 75 GYRGITCFIVERSM----------EGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGI 144 (575)
Q Consensus 75 ~~~~~~~~~vp~~~----------~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~ 144 (575)
+..++++|+||.+. +||++.+.+.++|+++++++.|.|+| |.+++||.+++|+......++..|+.+
T Consensus 245 g~~GiSlFlVp~~~~~~~G~~~~~~gv~~~~~~~kmG~~gs~t~~l~fd~---~~~~llG~~~~Gl~~~~~~mn~aRl~v 321 (622)
T PTZ00456 245 TTKGLSLFLVPRHVVKPDGSLETAKNVKCIGLEKKMGIKGSSTCQLSFEN---SVGYLIGEPNAGMKQMFTFMNTARVGT 321 (622)
T ss_pred CCCceEEEEEeCCCCCcCCCccCCCCeeecCcccccCCCCCceEEEEeeC---hhHhhcCCCChHHHHHHHHHHHHHHHH
Confidence 45689999999864 47888888899999999999999999 468999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccc------------CccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy5138 145 AAQMTGLAQGCLDATIPYTLERSQV------------GHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAG 212 (575)
Q Consensus 145 ~a~~~G~~~~a~~~a~~~a~~r~~~------------g~~~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~ 212 (575)
++.++|+++++++.+++|+++|+|| +.+|..||. ||++|++|.+.++++|++++.++..+|..
T Consensus 322 aa~~lG~a~~Al~~Al~YAk~R~Qfr~~~~~~~~~~~~~~I~~~~~-----Vr~~L~~~~a~~eaaral~~~aA~~~D~~ 396 (622)
T PTZ00456 322 ALEGVCHAELAFQNALRYARERRSMRALSGTKEPEKPADRIICHAN-----VRQNILFAKAVAEGGRALLLDVGRLLDIH 396 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCccccccccccCCCCccccCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999996 445555554 99999999999999999999999998865
No 78
>PLN02443 acyl-coenzyme A oxidase
Probab=99.97 E-value=2.4e-29 Score=270.69 Aligned_cols=210 Identities=24% Similarity=0.345 Sum_probs=185.3
Q ss_pred CHHHHHHhhhHhhcCC-ceeEEecCCCCCCCcCCCeeEEEEe--CCEEEEe-----eEEeeeeCC-CCCcEEEEEEEecC
Q psy5138 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKD--GNHYILN-----GSKMWISNA-DIANIFLVMANVDV 72 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~-~~~~a~se~~~g~~~~~~~~~a~~~--~~g~~l~-----G~k~~~t~~-~~ad~~~v~a~~~~ 72 (575)
|++||++|||.+.+|+ ++|+++|||++|||+..++|||+++ +++|+|| |.|+|++++ ..|++++|+|+...
T Consensus 115 T~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~efvIntP~~~g~K~wig~~~~~A~~~vV~Arl~~ 194 (664)
T PLN02443 115 TEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLIT 194 (664)
T ss_pred CHHHHHHHHHHHhCCChheEEEecCCCcccchhhCeEEEEEeCCCCEEEECCCCCCEEEEeecCCcccCCEEEEEEEECC
Confidence 7899999999999999 6999999999999999999999987 6899998 999999997 68999999999865
Q ss_pred CCCccceeEEEEecC-------CCCeEEcccCcccC---CCCCCceeEEeeeeEeCCCCcccCC------CCcH------
Q psy5138 73 SKGYRGITCFIVERS-------MEGFSVGKKENKLG---MKASGTCSLHFDNVRVPEENIISGV------GEGY------ 130 (575)
Q Consensus 73 ~~~~~~~~~~~vp~~-------~~Gv~~~~~~~~~g---~~~~~~~~v~f~~v~Vp~~~~l~~~------~~g~------ 130 (575)
+++..++++|+||.+ .|||++.+.+.++| .++.+++.|.|+||+||.+++|+.. +..+
T Consensus 195 ~~~~~Gv~~FlVp~r~~~~~~~~PGV~vgd~g~K~G~~~~~~~dng~l~Fd~VrVP~~nlLg~~~~v~~~G~~~~~~~~~ 274 (664)
T PLN02443 195 NGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGAYNTMDNGFLRFDHVRIPRDQMLMRLSKVTREGKYVQSDVPR 274 (664)
T ss_pred CCCCCCeEEEEEecCCcCcCCCCCCeEEeccccccCcccCCCCcceEEEeCcEEECHHHcCCcccccCCCCceecccchH
Confidence 444567899999975 89999999999999 5568899999999999999999753 2222
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcccc--ccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5138 131 KIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIF--DFQACNGGSVQHQISQAVTQVECARLLTYNAARL 208 (575)
Q Consensus 131 ~~~~~~~~~~~~~~~a~~~G~~~~a~~~a~~~a~~r~~~g~~~~--~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~ 208 (575)
......+...|+.+++.++|.++++++.+++|+..|+|||.|++ .+|..+.+..|++|+++.+.+++++.+.+.+.+.
T Consensus 275 ~~~~~~l~~~R~~i~a~a~g~~~~Al~iAvrYa~~R~QFg~~~~~~e~qii~y~~~Q~rL~~~la~~~a~r~~~~~a~~~ 354 (664)
T PLN02443 275 QLVYGTMVYVRQTIVADASTALSRAVCIATRYSAVRRQFGSQDGGPETQVIDYKTQQSRLFPLLASAYAFRFVGEWLKWL 354 (664)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEeCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23445677889999999999999999999999999999999987 8888677778999999999999999999999887
Q ss_pred hhc
Q psy5138 209 LEA 211 (575)
Q Consensus 209 ~~~ 211 (575)
++.
T Consensus 355 ~~~ 357 (664)
T PLN02443 355 YTD 357 (664)
T ss_pred HHH
Confidence 753
No 79
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=99.97 E-value=2.1e-29 Score=271.38 Aligned_cols=198 Identities=27% Similarity=0.435 Sum_probs=179.1
Q ss_pred CHHHHHHhhhHhhcCC-ceeEEecCCCCCCCcCCCeeEEEEeC--CEEEEe-----eEEeeeeCCC-CCcEEEEEEEecC
Q psy5138 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDG--NHYILN-----GSKMWISNAD-IANIFLVMANVDV 72 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~-~~~~a~se~~~g~~~~~~~~~a~~~~--~g~~l~-----G~k~~~t~~~-~ad~~~v~a~~~~ 72 (575)
|++||++|||.+.+|+ ++|+++|||++|||...++|+|++++ ++|+|| |.|+|++|+. .|++++|+|+...
T Consensus 118 t~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d~~t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl~~ 197 (610)
T cd01150 118 TDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYDPLTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLIT 197 (610)
T ss_pred CHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEECCCCCeEEECCCCCCceEECccCcccCCCEEEEEEEecc
Confidence 7899999999999999 69999999999999999999999988 899999 9999999975 4999999999864
Q ss_pred CCCccceeEEEEecC-------CCCeEEcccCcccCCCCCCceeEEeeeeEeCCCCcccC----------------CCCc
Q psy5138 73 SKGYRGITCFIVERS-------MEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISG----------------VGEG 129 (575)
Q Consensus 73 ~~~~~~~~~~~vp~~-------~~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~l~~----------------~~~g 129 (575)
+++..++++|+||.+ .|||++.+.+.++|+++.+++.+.||||+||.+++|+. ++.|
T Consensus 198 ~g~~~Gv~~FlVp~rd~~~~~~~pGV~i~~~~~k~G~~g~dng~l~Fd~vrVP~~nlL~~~~~v~~~G~~~~~~~~~~~g 277 (610)
T cd01150 198 PGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMGLNGVDNGFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKR 277 (610)
T ss_pred CCCCCCeEEEEEeccccccCCCCCCeEEeecccccCCCCCCeEEEEEeeeEecHHHhcccccccCCCCceecCCCchhhH
Confidence 444567999999963 39999999999999999999999999999999999975 5667
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcc-------ccccccCCChhHHHHHHHHHHHHHHHHHHH
Q psy5138 130 YKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHR-------IFDFQACNGGSVQHQISQAVTQVECARLLT 202 (575)
Q Consensus 130 ~~~~~~~~~~~~~~~~a~~~G~~~~a~~~a~~~a~~r~~~g~~-------~~~~q~~~~~~vq~~la~~~~~~~~~~~~~ 202 (575)
+......+..+|+.+++.++|.++++++.+++|++.|+|||.| |.+||. +|++|+++.+.+++++...
T Consensus 278 ~~~~~~~~~~gRl~ia~~a~g~~~~al~iAi~Ya~~R~qfg~~~~~~e~~I~~~q~-----~q~rL~~~la~~~a~~~~~ 352 (610)
T cd01150 278 YGAMLGTRSGGRVGLIYDAAMSLKKAATIAIRYSAVRRQFGPKPSDPEVQILDYQL-----QQYRLFPQLAAAYAFHFAA 352 (610)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHeeeecCCCCCCCcchhhccHh-----HHHHHHHHHHHHHHHHHHH
Confidence 8888888999999999999999999999999999999999999 889988 9999999999998776444
Q ss_pred HH
Q psy5138 203 YN 204 (575)
Q Consensus 203 ~~ 204 (575)
..
T Consensus 353 ~~ 354 (610)
T cd01150 353 KS 354 (610)
T ss_pred HH
Confidence 33
No 80
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=99.97 E-value=3.9e-27 Score=245.03 Aligned_cols=194 Identities=24% Similarity=0.303 Sum_probs=171.3
Q ss_pred CHHHHHHhhhHhhcCC-ceeEEecCCCCCCCcCCCeeEEEEe-CCEEEEeeEEeeeeCCCCCcEEEEEEEecC----CCC
Q psy5138 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKD-GNHYILNGSKMWISNADIANIFLVMANVDV----SKG 75 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~-~~~~a~se~~~g~~~~~~~~~a~~~-~~g~~l~G~k~~~t~~~~ad~~~v~a~~~~----~~~ 75 (575)
|++||++|||++++|+ +.+++++| ++|+|+..+.|+++++ +|+|+|||+|.|+ ++..||+++|+|++++ +.+
T Consensus 118 t~eqker~Lp~lasGe~i~A~AltE-~aGSD~a~i~TtA~~~~gg~wvLNG~K~~t-~g~~Ad~~lV~Art~~~~~~~~g 195 (520)
T PTZ00457 118 SKELKGKYLTAMSDGTIMMGWATEE-GCGSDISMNTTKASLTDDGSYVLTGQKRCE-FAASATHFLVLAKTLTQTAAEEG 195 (520)
T ss_pred CHHHHHHHHHHHhCCCcEEEEEeCC-CCCCccccceeEEEEcCCCeEEEEEEEEEE-cCchhcEEEEEeecCCccccccc
Confidence 6899999999999999 69999988 8999999999999985 5689999999965 8999999999999752 111
Q ss_pred ---ccceeEEEEecCCCCeEEcccCcccCCCCCCceeEEeeeeEeCCCCcccCCCCcHHHHHHhhhHHHHHHHHHHHHHH
Q psy5138 76 ---YRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLA 152 (575)
Q Consensus 76 ---~~~~~~~~vp~~~~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~~a~~~G~~ 152 (575)
..++++|+||.++|||++.. ++|.|||| |.+++||.+++|++.....++.+|+.+++..+|++
T Consensus 196 ~~~~~git~FlV~~dapGVtv~~------------~eV~FddV--P~~~vLG~~g~G~~~a~~~L~~~Rl~~aA~~vGia 261 (520)
T PTZ00457 196 ATEVSRNSFFICAKDAKGVSVNG------------DSVVFENT--PAADVVGVVGEGFKDAMITLFTEQYLYAASLLGIM 261 (520)
T ss_pred ccCcCceEEEEEECCCCceEEec------------CEEEECCC--CHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24689999999999999952 59999997 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcccCccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCchHHHHHHHHHHH
Q psy5138 153 QGCLDATIPYTLERSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAG-QPFIKQASMAKYFAS 227 (575)
Q Consensus 153 ~~a~~~a~~~a~~r~~~g~~~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~ 227 (575)
+++++.+++|++ +|+ +|+++++|.+.++++|++++.+++.+|.+ .+...+..+.|++..
T Consensus 262 ~~ale~av~ya~-----------~Qa-----Vq~~LAdma~~ieAarsl~y~AA~~~D~g~~d~~~eAa~ak~~~s 321 (520)
T PTZ00457 262 KRVVQELRGSNA-----------EEG-----ATDTVASFACAMYAMESTLYALTANLDLPTEDSLLECTLVSAFVQ 321 (520)
T ss_pred HHHHHHHHHHHH-----------hhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHhh
Confidence 999999999986 366 99999999999999999999999999987 456777777775543
No 81
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.94 E-value=1.4e-25 Score=232.91 Aligned_cols=287 Identities=17% Similarity=0.213 Sum_probs=218.6
Q ss_pred HHhcccc-cCCCceeEEeecCCCC-CC-------ccccceeEEEEeCCEEEEeeeeccccCCccccEEEEEEEeCCCCCC
Q psy5138 268 KEKYLPR-LAQTDAGSFALSEPGS-GS-------DAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGY 338 (575)
Q Consensus 268 ~~~~l~~-~~~~~~~~~~~te~~~-gs-------~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a~~~~~~~~ 338 (575)
..+|+.. ...+...+.+++.|.. -| |........+++++||+|||.|.|+|++ .||+++|++++...+++
T Consensus 129 ~~~y~~~~~~~dl~~~~a~~dp~~dRs~~~~~~~d~~~~~~Vve~~~dGiVV~GaK~~~T~~-~ad~~~V~~~~~~~~~~ 207 (477)
T TIGR02309 129 VRNYYEYLRDNDLALTHALTNPQVNRAKPPSEQPDPYIALGVVEQTDKGVIVRGARMTATFP-IADEILIFPSTVLKAGA 207 (477)
T ss_pred HHHHHHHHHHhCceeeccccCCCCCCCCChhhcCCCCcceeEEEEcCCCEEEeCHHHhhhhc-ccceEEEeccCCCCCcc
Confidence 3456666 5677778888888752 11 2221223455788999999999999996 99999999998654332
Q ss_pred -Cc--eEEEEEeCCCCCeeecccCccCCCCCc-----------cceeEEEcceeeCCCCc--ccCC---CchHHHHHHHH
Q psy5138 339 -RG--ITCFIVERSMEGFSVGKKENKLGMKAS-----------GTCSLHFDNVRVPEENI--ISGV---GEGYKIAAGFL 399 (575)
Q Consensus 339 -~~--~~~~lv~~~~~gv~i~~~~~~~G~rg~-----------~s~~l~f~~v~Vp~~~~--l~~~---~~~~~~~~~~~ 399 (575)
.+ ...|+||.++|||++....+++|.++. ..+.|.||||+||++++ +|.. +.++.....
T Consensus 208 ~~~~ya~~F~VP~dtpGl~~i~r~~~~~~~~~~D~plssrfde~da~vvFDdV~VPwe~VF~~g~~e~a~~~f~~~~~-- 285 (477)
T TIGR02309 208 EKDPYALAFAIPTNTPGLHFVCREALDGGDSPFDHPLSSRFEEMDALVIFDDVLVPWERIFILGDVELCNNAYAATGA-- 285 (477)
T ss_pred CCCCeEEEEEeeCCCCceEEEeCCccCCCCCcccCccccccCCCeEEEEeCceeccHHHhhhcCCHHHHHHHHHHHHH--
Confidence 22 689999999999999999889998876 56899999999999999 7776 555543322
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CcHH
Q psy5138 400 NQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQ-----PFIK 474 (575)
Q Consensus 400 ~~~r~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~~~~-----~~~~ 474 (575)
.+..+..++|....++|.++.|+.. .+++.++.++|.+|++|++|.+.++++|++++.++...+.+. |...
T Consensus 286 ---~~~~~~~~~g~~~~~ld~~~g~a~~-~a~~~gi~~~q~VQ~kLAEm~~~~Ea~ral~~aAa~~~~~~~~G~~~P~~~ 361 (477)
T TIGR02309 286 ---VNHMAHQVVALKIAKTEAFLGVAAL-MAEGIGADGFQHVQEKIAEIIVYLEAMKAFWTRAEEEAKENAYGLMTPDRG 361 (477)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCcccCCHH
Confidence 2556888899999999999999999 899999999999999999999999999999999999888743 4577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhcccccccccccccccccccCCC--hHHHHhhhhccce
Q psy5138 475 QASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDY--PQEKYYRDCKVGT 552 (575)
Q Consensus 475 ~~~~ak~~~~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~~~~--~~~~~~rd~~~~~ 552 (575)
.++++|+++++...++. .++|++||.|+.. .|.+.-| +..... ..++-++ |.++..+. .+-++..|+....
T Consensus 362 ~as~aKl~~~e~~~rv~-~alq~lGG~G~~~-~Ps~~df-~~e~~~-~l~kyl~---~~~~~a~eR~kl~rl~~d~~~s~ 434 (477)
T TIGR02309 362 ALDAARNLYPRLYPRLR-EILEQLGASGLIT-LPSEKDF-KGPLGP-FLEKFLQ---GANLEAKERVALFRLAWDMTMSS 434 (477)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhCCcEEe-cCChHHh-ChhhHH-HHHHHhC---CCCCCHHHHHHHHHHHHHHhcCc
Confidence 89999999999999995 9999999999973 5555445 333222 2222222 22343333 4567777775554
Q ss_pred ----------eccchHHHHHHHHHHH
Q psy5138 553 ----------IYEGTSNIQLSTIAKY 568 (575)
Q Consensus 553 ----------~~~G~~~~~~~~i~~~ 568 (575)
.+.|++..++..+-+.
T Consensus 435 fg~r~~~ye~~~~G~p~~~~~~~~~~ 460 (477)
T TIGR02309 435 FGARQELYERYFFGDPVRMYQALYNV 460 (477)
T ss_pred hhhhhheeehhcCCCHHHHHHHHHHh
Confidence 3678888777766543
No 82
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=99.93 E-value=1.9e-25 Score=229.83 Aligned_cols=172 Identities=22% Similarity=0.263 Sum_probs=150.3
Q ss_pred CCeeEEEEeCCEEEEeeEEeeeeCCCCCcEEEEEEEecCCCCccceeEEEEecCCCCeEEcccCcccCCCCCCceeEEee
Q psy5138 34 AMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFD 113 (575)
Q Consensus 34 ~~~~~a~~~~~g~~l~G~k~~~t~~~~ad~~~v~a~~~~~~~~~~~~~~~vp~~~~Gv~~~~~~~~~g~~~~~~~~v~f~ 113 (575)
.+.+++++++|||+|||+|.|||++..+|+++|.+++++++++.++++|+||.+ ||++.+.|+.+|+++++++++.|+
T Consensus 108 ~~~t~A~~~~~gy~lnG~K~~it~~~~ad~~~v~a~~~~~~~~~~~~~~lV~~~--Gv~~~~~~~~~G~r~~~s~~v~f~ 185 (370)
T cd01159 108 APGGRAERVDGGYRVSGTWPFASGCDHADWILVGAIVEDDDGGPLPRAFVVPRA--EYEIVDTWHVVGLRGTGSNTVVVD 185 (370)
T ss_pred cCCceeEEeCCeEEEeccccCccCCCcCceeEeeeECCCCCCCCcceEEEEEhH--HCEEecccccccccccCCCcEEEc
Confidence 346788899999999999999999999999999999764434567899999987 999999999999999999999999
Q ss_pred eeEeCCCCcccCCC------CcHH---HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc---CccccccccCCC
Q psy5138 114 NVRVPEENIISGVG------EGYK---IAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQV---GHRIFDFQACNG 181 (575)
Q Consensus 114 ~v~Vp~~~~l~~~~------~g~~---~~~~~~~~~~~~~~a~~~G~~~~a~~~a~~~a~~r~~~---g~~~~~~q~~~~ 181 (575)
||+||++++|+..+ .++. +......++++.+++.++|+++++++.+++|+++|.+| |+++.++|.
T Consensus 186 ~v~Vp~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~aa~~lG~a~~~l~~~~~~~~~R~~~~~~g~~i~~~~~--- 262 (370)
T cd01159 186 DVFVPEHRTLTAGDMMAGDGPGGSTPVYRMPLRQVFPLSFAAVSLGAAEGALAEFLELAGKRVRQYGAAVKMAEAPI--- 262 (370)
T ss_pred ceEcCccceecccccccCCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccCCCccccccCHH---
Confidence 99999999997432 2311 22335567789999999999999999999999999997 678999988
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy5138 182 GSVQHQISQAVTQVECARLLTYNAARLLEAG 212 (575)
Q Consensus 182 ~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~ 212 (575)
+|+++++|.+.+++++++++.+++.++.+
T Consensus 263 --v~~~la~~~~~l~~a~~~~~~aa~~~~~~ 291 (370)
T cd01159 263 --TQLRLAEAAAELDAARAFLERATRDLWAH 291 (370)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988764
No 83
>KOG0136|consensus
Probab=99.93 E-value=1.4e-25 Score=227.13 Aligned_cols=280 Identities=26% Similarity=0.371 Sum_probs=234.6
Q ss_pred CCHHHHHhcccc-cCCCceeEEeecCCCCCCccccceeEEEEeC--CEEEEe-----eeeccccCCc-cccEEEEEEEeC
Q psy5138 263 GTTEQKEKYLPR-LAQTDAGSFALSEPGSGSDAFAMKTTATKDG--NHYILN-----GSKMWISNAD-IANIFLVMANVD 333 (575)
Q Consensus 263 g~~~~~~~~l~~-~~~~~~~~~~~te~~~gs~~~~~~~~a~~~~--~g~~l~-----G~k~~~s~~~-~a~~~~v~a~~~ 333 (575)
|++||.++||.+ ...++++|+|.||.++|+++..++|+|+.+. +.|+|| ..|+|..|.+ .|+|.+|.|+..
T Consensus 126 ~t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~LET~AtyD~~T~eFVl~TPt~ta~KWWPGgLG~ssnhAvV~AqL~ 205 (670)
T KOG0136|consen 126 GTDEQQEKWLSRALNMEIIGTYAQTELGHGTNLRGLETTATYDPKTQEFVLNTPTLTATKWWPGGLGKSSNHAVVVAQLI 205 (670)
T ss_pred CCHHHHHHHHHhcccceEEEeehhhhhcccccccccceeeeecCCcceEEecCCCcceecccCCccccccchheeeeeee
Confidence 899999999999 8888999999999999999999999999875 568876 8899988875 488999999998
Q ss_pred CCCCCCceEEEEEeC-------CCCCeeecccCccCCCCCccceeEEEcceeeCCCCcccCCC----ch-------HHHH
Q psy5138 334 VSKGYRGITCFIVER-------SMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVG----EG-------YKIA 395 (575)
Q Consensus 334 ~~~~~~~~~~~lv~~-------~~~gv~i~~~~~~~G~rg~~s~~l~f~~v~Vp~~~~l~~~~----~~-------~~~~ 395 (575)
..+...|+..|+||. ..|||+|.|...+||..|.+++-+.||||+||.+++|.+.. +| ....
T Consensus 206 ~~gk~~G~h~FiV~lRd~~th~pL~Gi~iGDIG~Kmg~ng~dNGfL~f~nvRIPR~nmLmr~~kV~~dGtyv~p~~~~l~ 285 (670)
T KOG0136|consen 206 TKGKCYGPHPFIVQLRDEDTHKPLPGITVGDIGPKMGFNGVDNGFLGFDNVRIPRTNMLMRHAKVEPDGTYVKPPHPKLG 285 (670)
T ss_pred ecccccccceeEEEccCccccCCCCCCeecCCCccccccCCccceeeecceeechHhhhhhhheecCCCccccCCccccc
Confidence 888888999999994 25799999999999999999999999999999999984211 11 1222
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhccccC-------ccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q psy5138 396 AGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFG-------HRIFDFQSVQHQISQAATQVECARLLTYNAARLL-- 466 (575)
Q Consensus 396 ~~~~~~~r~~~~a~~~G~~~~al~~~~~~~~~r~~~g-------~~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~-- 466 (575)
...+-..|..+..-..=....|..++.+|+.-|+|+. ..|.|+|..|.+|--..+...+.+.......+..
T Consensus 286 Y~tMv~vRs~mv~d~a~~La~A~tIAtRYSaVRRQ~~i~pg~~E~qIlDyqTQQ~rlFP~LA~ayAf~~~g~~l~~~Y~~ 365 (670)
T KOG0136|consen 286 YGTMVYVRSLMVMDQARFLAKAATIATRYSAVRRQSEIRPGQPEVQILDYQTQQYRLFPQLARAYAFRFVGEELWELYED 365 (670)
T ss_pred eeeeEEEeehhHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCceeeechhHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233344555555555666778899999999999974 3589999999999998888888777666655543
Q ss_pred -----HcCC-----CcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhccccccccccccccccccc
Q psy5138 467 -----EAGQ-----PFIKQASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFT 536 (575)
Q Consensus 467 -----~~~~-----~~~~~~~~ak~~~~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~ 536 (575)
..+. +.....+-.|..+++.+.+-++.|... |||+||+
T Consensus 366 ~~~~l~~g~~s~LpeLHaLS~gLKa~~T~~~~~GIE~~R~a--------------------------------CGGHGYs 413 (670)
T KOG0136|consen 366 VLKELENGNFSRLPELHALSAGLKAVVTWDTAQGIEQCRLA--------------------------------CGGHGYS 413 (670)
T ss_pred HHHHHhcCChhhchHHHHHHhhhHHHhhhhhhhHHHHHHHh--------------------------------cCCccch
Confidence 2331 235566778999999999999999999 9999999
Q ss_pred CCChHHHHhhhhccceeccchHHHHHHHHHHHHHhhhc
Q psy5138 537 KDYPQEKYYRDCKVGTIYEGTSNIQLSTIAKYIAKEYT 574 (575)
Q Consensus 537 ~~~~~~~~~rd~~~~~~~~G~~~~~~~~i~~~~~~~~~ 574 (575)
..+.++.+|-.+.+.+++||.|.|+..++||.|.|.|.
T Consensus 414 ~~Sglp~iY~~~v~~CTYEGEN~VmlLQ~ARfLmKs~~ 451 (670)
T KOG0136|consen 414 QASGLPEIYGVAVGACTYEGENTVLLLQVARFLVKSYA 451 (670)
T ss_pred hhcCCccceeeeeeeeeeeccceeehHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999985
No 84
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....
Probab=99.88 E-value=3.5e-21 Score=171.79 Aligned_cols=150 Identities=39% Similarity=0.651 Sum_probs=146.1
Q ss_pred CchHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy5138 389 GEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEA 468 (575)
Q Consensus 389 ~~~~~~~~~~~~~~r~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~~ 468 (575)
++||.+....+...|+.+++..+|.++.+++.+.+|+++|++||+++.++|.++++++++.++++++++++++++..++.
T Consensus 1 g~G~~~~~~~l~~~R~~~~~~~~g~~~~~l~~a~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~ 80 (150)
T PF00441_consen 1 GQGWAVALDTLNHERLMIAAMALGIARRALDEAIEYARRRRQFGKPLAEHPAVRRRLADMAARLEAMRALVYRAARRLDA 80 (150)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccchhhhHHHHHhhccchhhhhcccccccccccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhcccccccccccccccccccCCChHHHHhhhh
Q psy5138 469 GQPFIKQASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDC 548 (575)
Q Consensus 469 ~~~~~~~~~~ak~~~~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~~~~~~~~~~rd~ 548 (575)
+.....+.+++|+++++.+.++++.++++ +|+.||..+++++++++|+
T Consensus 81 ~~~~~~~~a~~K~~~t~~~~~~~~~~~~l--------------------------------~G~~g~~~~~~l~~~~rda 128 (150)
T PF00441_consen 81 GQNDPVEAAIAKYFATELAQDIAEEAMQL--------------------------------LGGRGLTEDNPLERLYRDA 128 (150)
T ss_dssp TSSTHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------HGGGGGBTTSSHHHHHHHH
T ss_pred ccccccccchhhhhcccccccchhhhhhh--------------------------------hhhhhhcccCHHHHHHhhc
Confidence 98888999999999999999999999999 9999999999999999999
Q ss_pred ccceeccchHHHHHHHHHHHHH
Q psy5138 549 KVGTIYEGTSNIQLSTIAKYIA 570 (575)
Q Consensus 549 ~~~~~~~G~~~~~~~~i~~~~~ 570 (575)
+.+.+++|++++++..|+|.+|
T Consensus 129 ~~~~i~~G~~ev~~~~ia~~~l 150 (150)
T PF00441_consen 129 RAFTIYGGTNEVQRNQIARRLL 150 (150)
T ss_dssp HHGGTSTSTHHHHHHHHHHHHH
T ss_pred ceeeeccCCHHHHHHHHHHHhC
Confidence 9999999999999999999886
No 85
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.87 E-value=3.9e-21 Score=199.79 Aligned_cols=205 Identities=20% Similarity=0.231 Sum_probs=164.4
Q ss_pred HHhhhHhhcCCc-eeEEecCCCCC-----CCcCCCe---eEEEEeCCEEEEeeEEeeeeCCCCCcEEEEEEEecCCCCc-
Q psy5138 7 EKYLPRLAQTDA-GSFALSEPGSG-----SDAFAMK---TTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGY- 76 (575)
Q Consensus 7 ~~~l~~~~~g~~-~~~a~se~~~g-----~~~~~~~---~~a~~~~~g~~l~G~k~~~t~~~~ad~~~v~a~~~~~~~~- 76 (575)
.+|+..+.+..+ .+.+++.|..- +...++. -..+++++||+|||.|.|+|++ .||+++|+++++..++.
T Consensus 130 ~~y~~~~~~~dl~~~~a~~dp~~dRs~~~~~~~d~~~~~~Vve~~~dGiVV~GaK~~~T~~-~ad~~~V~~~~~~~~~~~ 208 (477)
T TIGR02309 130 RNYYEYLRDNDLALTHALTNPQVNRAKPPSEQPDPYIALGVVEQTDKGVIVRGARMTATFP-IADEILIFPSTVLKAGAE 208 (477)
T ss_pred HHHHHHHHHhCceeeccccCCCCCCCCChhhcCCCCcceeEEEEcCCCEEEeCHHHhhhhc-ccceEEEeccCCCCCccC
Confidence 578888888885 88999999621 1111222 2345688999999999999996 99999999887643222
Q ss_pred cc--eeEEEEecCCCCeEEcccCcccCCCCC-----------CceeEEeeeeEeCCCCc--ccCC---CCcHHHHHHhhh
Q psy5138 77 RG--ITCFIVERSMEGFSVGKKENKLGMKAS-----------GTCSLHFDNVRVPEENI--ISGV---GEGYKIAAGFLN 138 (575)
Q Consensus 77 ~~--~~~~~vp~~~~Gv~~~~~~~~~g~~~~-----------~~~~v~f~~v~Vp~~~~--l~~~---~~g~~~~~~~~~ 138 (575)
++ .+.|+||.++|||++++..+.+|.++. ..+.|.||||+||++++ +|.. +.++.....
T Consensus 209 ~~~ya~~F~VP~dtpGl~~i~r~~~~~~~~~~D~plssrfde~da~vvFDdV~VPwe~VF~~g~~e~a~~~f~~~~~--- 285 (477)
T TIGR02309 209 KDPYALAFAIPTNTPGLHFVCREALDGGDSPFDHPLSSRFEEMDALVIFDDVLVPWERIFILGDVELCNNAYAATGA--- 285 (477)
T ss_pred CCCeEEEEEeeCCCCceEEEeCCccCCCCCcccCccccccCCCeEEEEeCceeccHHHhhhcCCHHHHHHHHHHHHH---
Confidence 22 689999999999999999988888876 66999999999999999 6665 555533322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----
Q psy5138 139 QGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQ----- 213 (575)
Q Consensus 139 ~~~~~~~a~~~G~~~~a~~~a~~~a~~r~~~g~~~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~----- 213 (575)
.+..+..++|+...+++.++.|+.. ..++.++.++|+ ||++|++|.+.+++++++.+.++...+.++
T Consensus 286 --~~~~~~~~~g~~~~~ld~~~g~a~~-~a~~~gi~~~q~-----VQ~kLAEm~~~~Ea~ral~~aAa~~~~~~~~G~~~ 357 (477)
T TIGR02309 286 --VNHMAHQVVALKIAKTEAFLGVAAL-MAEGIGADGFQH-----VQEKIAEIIVYLEAMKAFWTRAEEEAKENAYGLMT 357 (477)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcccchH-----HHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCccc
Confidence 2556888999999999999999999 899999999998 999999999999999999999999988743
Q ss_pred CchHHHHHHH
Q psy5138 214 PFIKQASMAK 223 (575)
Q Consensus 214 ~~~~~~~~~~ 223 (575)
+...+.++.|
T Consensus 358 P~~~~as~aK 367 (477)
T TIGR02309 358 PDRGALDAAR 367 (477)
T ss_pred CCHHHHHHHH
Confidence 2244555655
No 86
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AFE_C 3AFF_A 2JBT_D 2JBS_C 2JBR_B 2RFQ_B 2OR0_B.
Probab=99.72 E-value=7.3e-17 Score=140.53 Aligned_cols=120 Identities=28% Similarity=0.418 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccc--cCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCc----H
Q psy5138 404 IGIAAQMTGLAQGCLDATIPYTLERSQ--FGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLE----AGQPF----I 473 (575)
Q Consensus 404 ~~~~a~~~G~~~~al~~~~~~~~~r~~--~g~~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~----~~~~~----~ 473 (575)
++++++++|+++++++.+++++++|.. .+.++.+.|.+|.+|+++.+.+++++++++++++.++ .+.+. .
T Consensus 1 L~~aa~~lG~A~~al~~~~~~~~~r~~~~~~~~~~~~p~~q~~lgea~~~~~aa~~~l~~~~~~~~~~~~~g~~~~~~~~ 80 (134)
T PF08028_consen 1 LSFAAVYLGIARGALDEFVEYLRGRVRASGGAPLADDPYIQARLGEAAARLDAARALLYRAARRLWEAADAGEELTPEER 80 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSBCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHH
Confidence 468899999999999999999999877 5789999999999999999999999999999999854 44332 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhcccccc
Q psy5138 474 KQASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHIT 523 (575)
Q Consensus 474 ~~~~~ak~~~~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~ 523 (575)
....+.|.++.+.+.++++.+++++|++++++++|++|+|||++++.+|+
T Consensus 81 ~~~~~~~~~a~~~a~~av~~l~~~~G~~a~~~~~pl~R~~RD~~~~~~H~ 130 (134)
T PF08028_consen 81 ARLRAAKAHAARLAREAVDRLFRLAGGSALYRSSPLERIWRDVRAGAQHP 130 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSGGGGGBTTSHHHHHHHHHHHHTTSG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhChHhhhcCCcHHHHHHHHHHHhhCc
Confidence 56778899999999999999999999999999999999999999999854
No 87
>KOG0135|consensus
Probab=99.71 E-value=1.9e-16 Score=157.55 Aligned_cols=206 Identities=28% Similarity=0.466 Sum_probs=168.4
Q ss_pred HHHHhhhHhhcCC-ceeEEecCCCCCCCcCCCeeEEEEe--CCEEEEe-----eEEeeeeCC-CCCcEEEEEEEecCCCC
Q psy5138 5 QKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKD--GNHYILN-----GSKMWISNA-DIANIFLVMANVDVSKG 75 (575)
Q Consensus 5 qk~~~l~~~~~g~-~~~~a~se~~~g~~~~~~~~~a~~~--~~g~~l~-----G~k~~~t~~-~~ad~~~v~a~~~~~~~ 75 (575)
-+.+|+.++-+-+ .+|||+||-++||+...++||++.+ .+.|+|| -.|.||.|+ .+|.+.+|+++...++.
T Consensus 143 rH~~yi~~~~n~ev~gcfamTEl~HGSNt~~I~TtatyDP~t~EfVinTP~~~A~K~WiGn~a~~athavvfa~L~~~g~ 222 (661)
T KOG0135|consen 143 RHHDYIQKTENYEVKGCFAMTELGHGSNTKGIQTTATYDPTTEEFVINTPDFSAIKCWIGNAAKHATHAVVFAQLHVPGQ 222 (661)
T ss_pred HHHHHHhhhhcceeeeeEEEeeecCCccccceeeeeeecCCCCeeEecCCcHHHHHHHhccccccceEEEEEEEeeecCc
Confidence 3445999998888 5999999999999999999999987 5889998 569999996 57899999999876555
Q ss_pred ccceeEEEEecC-------CCCeEEcccCcccCCCCCCceeEEeeeeEeCCCCcccCCC----------------CcHHH
Q psy5138 76 YRGITCFIVERS-------MEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVG----------------EGYKI 132 (575)
Q Consensus 76 ~~~~~~~~vp~~-------~~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~l~~~~----------------~g~~~ 132 (575)
..++..|+||.. .|||.+.+...+.|+.|.+++-+.|+||+||.+++|.+.+ ..+..
T Consensus 223 n~G~H~FiiqIRdpkT~~t~PgV~igD~G~K~GlnGVDNG~l~F~nvRIPRenLLNr~gDVtpDG~YvSs~k~~~qrfgA 302 (661)
T KOG0135|consen 223 NHGLHGFIIQIRDPKTLQTLPGVRIGDCGHKIGLNGVDNGFLWFDNVRIPRENLLNRFGDVTPDGKYVSSFKDPSQRFGA 302 (661)
T ss_pred cCceeeEEEEeecccccCCCCCceecccccccccccccCceEEEecccCchHHHhhhccCcCCCCeeeccCCChhhhhch
Confidence 568889999854 5799999999999999999999999999999999984221 22344
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcccc--ccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5138 133 AAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIF--DFQACNGGSVQHQISQAVTQVECARLLTYNAARLLE 210 (575)
Q Consensus 133 ~~~~~~~~~~~~~a~~~G~~~~a~~~a~~~a~~r~~~g~~~~--~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~ 210 (575)
....+..+|++++..++|.+.-++.+|++|...|+|||.+-. ..+-.|.|..|.||--+.+...+.+-...+....+.
T Consensus 303 ~L~~Ls~GRvgIa~~ai~~lkla~tIAIRYS~sRRQFGP~~~geEv~iLeYp~qQ~RL~P~LAaaya~~fas~~l~~~y~ 382 (661)
T KOG0135|consen 303 SLGSLSSGRVGIASSAIGALKLALTIAIRYSLSRRQFGPTKNGEEVPILEYPSQQYRLLPYLAAAYALSFASKYLVMIYV 382 (661)
T ss_pred hhcccccchhHHHHHHHHHHHHHHHHhhhhHHhHhhhCCCCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555678899999999999999999999999999999995432 223345555999999888877776666655555443
No 88
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.65 E-value=8.7e-15 Score=145.52 Aligned_cols=292 Identities=15% Similarity=0.144 Sum_probs=193.5
Q ss_pred HHhcccc-cCCCceeEEeecCCCCC-C----cccc--ceeE-EEEeCCEEEEeeeeccccCCccccEEEEEE-EeCCCCC
Q psy5138 268 KEKYLPR-LAQTDAGSFALSEPGSG-S----DAFA--MKTT-ATKDGNHYILNGSKMWISNADIANIFLVMA-NVDVSKG 337 (575)
Q Consensus 268 ~~~~l~~-~~~~~~~~~~~te~~~g-s----~~~~--~~~~-a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a-~~~~~~~ 337 (575)
...|+.. ...+...+-++|.|..- | .... .-.+ .+..++|.+|+|.|..+|+++.+|.++|+. +.-..++
T Consensus 133 ~~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVvee~~dGIVVrGAK~~aT~~a~tdei~V~Pt~~~~~~d 212 (493)
T COG2368 133 AREYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVEETEDGIVVRGAKALATGSALTDEIFVLPTRSMQEDD 212 (493)
T ss_pred HHHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEEEecCceEEEChHHHhccccccceEEEeeccccCCCC
Confidence 3457777 66777788899987521 1 1111 1222 335689999999999999999999999984 3332222
Q ss_pred CCceEEEEEeCCCCCeeecccCcc---CCCCCccc------------eeEEEcceeeCCCCccc--CCC--chHHHHHHH
Q psy5138 338 YRGITCFIVERSMEGFSVGKKENK---LGMKASGT------------CSLHFDNVRVPEENIIS--GVG--EGYKIAAGF 398 (575)
Q Consensus 338 ~~~~~~~lv~~~~~gv~i~~~~~~---~G~rg~~s------------~~l~f~~v~Vp~~~~l~--~~~--~~~~~~~~~ 398 (575)
..-...|.+|+|+|||++...... -|+.+.+. +-|.|||||||+++++- ... ..+.....+
T Consensus 213 ~dfAv~FaiP~dt~GvK~i~r~s~~~~~~~~~g~fd~plssrfde~dailVfDdVfVPWERVf~y~d~~~~~~~~~~~~F 292 (493)
T COG2368 213 KDFAVAFAIPMDTEGVKFICRRSYELGRGAEGGPFDYPLSSRFDENDAILVFDDVFVPWERVFIYRDLERAYAWYAVSGF 292 (493)
T ss_pred CceEEEEEcccCCCceEEEecCcchhhcccCCCCCCCccccccccCceEEEecccccchhheeeeccHHHHHHHHHHHHH
Confidence 334567999999999998654421 12222222 45999999999999983 222 222222333
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CcH
Q psy5138 399 LNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQ-----PFI 473 (575)
Q Consensus 399 ~~~~r~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~~~~-----~~~ 473 (575)
....|...+.+..+...-.+..+..-++. ..+.++++||++|+||.+..+.+.++...++....... |..
T Consensus 293 a~~~~~q~~~~k~~k~d~i~G~~~~~~~~-----~Gv~~~~hIq~kl~Emi~~~e~~~al~~Aa~~~a~~~~~G~~~Pn~ 367 (493)
T COG2368 293 ARLHRQQAVGRKAVKLDFILGAAYLIAET-----NGVEEFRHIQEKLGEMIALLELMWALSDAAAEEAQKNPNGAWLPNP 367 (493)
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHh-----hCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCceecCH
Confidence 34445555555445444444444333332 35678999999999999999999999999988765533 567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhcccccccccccccccccccCCC--hHHHHhhhhccc
Q psy5138 474 KQASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDY--PQEKYYRDCKVG 551 (575)
Q Consensus 474 ~~~~~ak~~~~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~~~~--~~~~~~rd~~~~ 551 (575)
..+...|.++.....++.+.+.+++||.-++..+ ++-++|......+..-+ -|..++..+. .+-+++-|+...
T Consensus 368 ~~~n~~r~~~~~~~~~~~~~l~~i~gg~~i~lPS--~~D~~n~e~~~~l~kYl---rg~~~~~aeeR~k~~kL~wd~~~S 442 (493)
T COG2368 368 AYANVGRVYAPKAYPRIKEILQDISGGGIITLPS--AEDLFNPEIRPYLDKYL---RGSANVDAEERLKILKLLWDLTGS 442 (493)
T ss_pred HHHhhHHHhcccchHHHHHHHHHHhcCceeecCc--hhhhcCchhhHHHHHHH---hccCCCCHHHHHHHHHHHHHhhcC
Confidence 7899999999999999999999998877666554 66666665544322211 2323443333 344566666666
Q ss_pred e----------eccchHHHHHHHHHHHH
Q psy5138 552 T----------IYEGTSNIQLSTIAKYI 569 (575)
Q Consensus 552 ~----------~~~G~~~~~~~~i~~~~ 569 (575)
. .+.|+++..+..+.+..
T Consensus 443 ~fggr~~~ye~h~~Gs~~~iRi~~~r~~ 470 (493)
T COG2368 443 EFGGRHELYERHGAGSPDAIRIASLRYA 470 (493)
T ss_pred cccchhhhhHHhcCCChHHHHHHHHHHh
Confidence 4 36888888888777653
No 89
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.60 E-value=4.5e-13 Score=138.78 Aligned_cols=292 Identities=12% Similarity=0.073 Sum_probs=183.2
Q ss_pred HHhcccc-cCCCceeEEeecCCCC-CC-----ccccceeEEEEeCCEEEEeeeeccccCCccccEEEE-EEEeCC-CCCC
Q psy5138 268 KEKYLPR-LAQTDAGSFALSEPGS-GS-----DAFAMKTTATKDGNHYILNGSKMWISNADIANIFLV-MANVDV-SKGY 338 (575)
Q Consensus 268 ~~~~l~~-~~~~~~~~~~~te~~~-gs-----~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v-~a~~~~-~~~~ 338 (575)
..+|+.. ...+...+.+++.|.. -| +........++.++|.+|+|.|...|+++.+|.++| .....- .++.
T Consensus 138 ~~~yy~~~qenDL~~~hA~~dPk~DRsk~p~e~~D~~v~VVee~~dGIVVrGAK~~aT~a~~a~ei~V~~~~~~~~~~d~ 217 (519)
T TIGR02310 138 ARNWYKRIQESCLYFNHAIVNPPIDRNKPIDQVKDVYIKIEEERDDGIVVSGAKVVATNSALTHYNFIGFGSAQIIGDND 217 (519)
T ss_pred HHHHHHHHHHhCceeecceeCCCCCCCCccccCCCCceEEEEEcCCcEEEeCHHHHhcccchhcceeeccCcccccCCCC
Confidence 4457777 6677788888888752 11 111112344567899999999999999999999988 444311 1222
Q ss_pred CceEEEEEeCCCCCeeecccCccC----C----CC-------CccceeEEEcceeeCCCCcccCCCch----HHHHHHHH
Q psy5138 339 RGITCFIVERSMEGFSVGKKENKL----G----MK-------ASGTCSLHFDNVRVPEENIISGVGEG----YKIAAGFL 399 (575)
Q Consensus 339 ~~~~~~lv~~~~~gv~i~~~~~~~----G----~r-------g~~s~~l~f~~v~Vp~~~~l~~~~~~----~~~~~~~~ 399 (575)
.--..|.||.++|||++......- + .. +-.-+-+.|||||||+|+++--.+.. +.....+.
T Consensus 218 dyAvaFavP~dtpGlk~IcR~s~~~~~~~~~~~fD~PlssrfdE~Da~vVFDdVfVPWErVF~~gd~e~~~~~~~~~~~~ 297 (519)
T TIGR02310 218 DFALMFIAPMDAEGVKLICRHSYELVAGATGSPFDYPLSSRFDENDAILVMDSVFIPWENVLIYRDFERCRTWAQYGGFA 297 (519)
T ss_pred CeEEEEEeEcCCCceEEEeCCchhhccccCCCCCcCccccccCCceEEEEeCCcccchHHceecCCHHHHHhHHHhhhHH
Confidence 334579999999999997554221 0 00 01125799999999999998332211 11111111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCcHH
Q psy5138 400 NQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAG-----QPFIK 474 (575)
Q Consensus 400 ~~~r~~~~a~~~G~~~~al~~~~~~~~~r~~~g~~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~~~-----~~~~~ 474 (575)
..+....+.+.++.++-.+..+..-+.. ..+.++++||++|+||....+..++++..+....... .|...
T Consensus 298 ~~~~~q~~~r~~~k~dfl~G~a~~~ae~-----~G~~~~~hVqekl~Eli~~~E~~~a~~~Aa~~~~~~~~~G~~~P~~~ 372 (519)
T TIGR02310 298 RLFPMQACTRLAVKLDFITGLLHKALQC-----TGVLEFRGVQAQMGEVVAWRNLFWTLTDAMAGSAYQWKNGAQLPSAQ 372 (519)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCeEeeCHH
Confidence 1111111113333333333333333322 3466899999999999999999999998888766543 25577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCcchhhhhhhhcccccccccccccccccccCCC--hHHHHhhhhccce
Q psy5138 475 QASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDY--PQEKYYRDCKVGT 552 (575)
Q Consensus 475 ~~~~ak~~~~~~~~~~~~~~~~~~G~~~~~~~~p~~R~~RD~~~~~~~~~~~~~~~Gg~g~~~~~--~~~~~~rd~~~~~ 552 (575)
.+..+|.+..+...++.+.+.+++ ++|++...|-++-|.+......+ ++-+ -|..++..+. .+-++..|+....
T Consensus 373 ~~~a~r~~~~~~y~r~~eil~~~~-agGli~~pss~~Df~npe~~~~l-~kyl--~g~~~~~aeeRvkl~rL~wDl~~S~ 448 (519)
T TIGR02310 373 ALQTYRVMAPMAYHTIKKIIEQTV-TSGLIYLPSHIRDLNNPQIDQYL-EKYV--RGSNGMEHRERIKILKLLWDAIGSE 448 (519)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHc-cCCeeecCCcHHHccCchhHHHH-HHHh--cCCCCCCHHHHHHHHHHHHHHhcCc
Confidence 789999999999999999988664 45555556655655554443321 1221 2333344433 4667777776554
Q ss_pred ----------eccchHHHHHHHHHHH
Q psy5138 553 ----------IYEGTSNIQLSTIAKY 568 (575)
Q Consensus 553 ----------~~~G~~~~~~~~i~~~ 568 (575)
.+.|++..++..+-+.
T Consensus 449 fg~r~~~ye~~~~G~p~~~~~~~~~~ 474 (519)
T TIGR02310 449 FGGRHELYEINYAGSQDEIRLQVLRQ 474 (519)
T ss_pred hhhhhhheehhcCCCHHHHHHHHHHh
Confidence 3679999998888776
No 90
>KOG0136|consensus
Probab=99.53 E-value=2.5e-13 Score=138.86 Aligned_cols=208 Identities=25% Similarity=0.347 Sum_probs=154.8
Q ss_pred CHHHHHHhhhHhhcCC-ceeEEecCCCCCCCcCCCeeEEEEeC--CEEEEe-----eEEeeeeCC-CCCcEEEEEEEecC
Q psy5138 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDG--NHYILN-----GSKMWISNA-DIANIFLVMANVDV 72 (575)
Q Consensus 2 ~~~qk~~~l~~~~~g~-~~~~a~se~~~g~~~~~~~~~a~~~~--~g~~l~-----G~k~~~t~~-~~ad~~~v~a~~~~ 72 (575)
|+||.++||++....+ ++|+|.||-++|+++..++|+|+.+. +.|+|| ..|+|..+. ..+++.+|+|+.-.
T Consensus 127 t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~LET~AtyD~~T~eFVl~TPt~ta~KWWPGgLG~ssnhAvV~AqL~~ 206 (670)
T KOG0136|consen 127 TDEQQEKWLSRALNMEIIGTYAQTELGHGTNLRGLETTATYDPKTQEFVLNTPTLTATKWWPGGLGKSSNHAVVVAQLIT 206 (670)
T ss_pred CHHHHHHHHHhcccceEEEeehhhhhcccccccccceeeeecCCcceEEecCCCcceecccCCccccccchheeeeeeee
Confidence 7899999999999999 59999999999999999999999865 579887 889999884 56889999999876
Q ss_pred CCCccceeEEEEecC-------CCCeEEcccCcccCCCCCCceeEEeeeeEeCCCCcccCC----CCcH-------HHHH
Q psy5138 73 SKGYRGITCFIVERS-------MEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGV----GEGY-------KIAA 134 (575)
Q Consensus 73 ~~~~~~~~~~~vp~~-------~~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~l~~~----~~g~-------~~~~ 134 (575)
++..-++..|+||.. .|||++++...++|..+.+++-+-||||+||.++++.+- .+|. ....
T Consensus 207 ~gk~~G~h~FiV~lRd~~th~pL~Gi~iGDIG~Kmg~ng~dNGfL~f~nvRIPR~nmLmr~~kV~~dGtyv~p~~~~l~Y 286 (670)
T KOG0136|consen 207 KGKCYGPHPFIVQLRDEDTHKPLPGITVGDIGPKMGFNGVDNGFLGFDNVRIPRTNMLMRHAKVEPDGTYVKPPHPKLGY 286 (670)
T ss_pred cccccccceeEEEccCccccCCCCCCeecCCCccccccCCccceeeecceeechHhhhhhhheecCCCccccCCccccce
Confidence 666677889999954 579999999999999999999999999999999998411 1110 1111
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccc--cccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5138 135 GFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRI--FDFQACNGGSVQHQISQAVTQVECARLLTYNAARLL 209 (575)
Q Consensus 135 ~~~~~~~~~~~a~~~G~~~~a~~~a~~~a~~r~~~g~~~--~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~ 209 (575)
..+-..|..+.....=....|+.+|++|+..|+|+...- ..-|-.|.+..|+||--..+...+.+.......+.+
T Consensus 287 ~tMv~vRs~mv~d~a~~La~A~tIAtRYSaVRRQ~~i~pg~~E~qIlDyqTQQ~rlFP~LA~ayAf~~~g~~l~~~Y 363 (670)
T KOG0136|consen 287 GTMVYVRSLMVMDQARFLAKAATIATRYSAVRRQSEIRPGQPEVQILDYQTQQYRLFPQLARAYAFRFVGEELWELY 363 (670)
T ss_pred eeeEEEeehhHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCceeeechhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 222233444444444455677889999999999975321 122333444499988877666655555554444433
No 91
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=99.50 E-value=6.6e-14 Score=98.95 Aligned_cols=52 Identities=56% Similarity=0.871 Sum_probs=47.1
Q ss_pred eEEecCCCCCCCcCCCeeEEEEeCCEEEEeeEEeeeeCCCCCcEEEEEEEec
Q psy5138 20 SFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVD 71 (575)
Q Consensus 20 ~~a~se~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~t~~~~ad~~~v~a~~~ 71 (575)
|+++|||++|+|+..+++++++++++|+|||.|.||+++..||+++|+||++
T Consensus 1 ~~a~tE~~~g~d~~~~~t~a~~~~~~~~L~G~K~~v~~~~~a~~~~v~ar~d 52 (52)
T PF02770_consen 1 AFALTEPGAGSDLAAVETTARRDGDGYVLNGEKRFVSNAPDADWFLVFARTD 52 (52)
T ss_dssp EEE--BTTBSSSGGG-SSEEEEETTEEEEEEEEEEEETTTTESEEEEEEEES
T ss_pred CEEEcCCCCCCCcccCEEEeecccceEEEeeEEEEECCcCccCEEEEEEEEC
Confidence 6899999999999999999999999999999999999999999999999973
No 92
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=99.47 E-value=1.2e-13 Score=97.69 Aligned_cols=52 Identities=56% Similarity=0.871 Sum_probs=47.1
Q ss_pred EEeecCCCCCCccccceeEEEEeCCEEEEeeeeccccCCccccEEEEEEEeC
Q psy5138 282 SFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVD 333 (575)
Q Consensus 282 ~~~~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a~~~ 333 (575)
|+++|||.+|+|+.++++++++++++|+|||+|.|++++..||+++|++|++
T Consensus 1 ~~a~tE~~~g~d~~~~~t~a~~~~~~~~L~G~K~~v~~~~~a~~~~v~ar~d 52 (52)
T PF02770_consen 1 AFALTEPGAGSDLAAVETTARRDGDGYVLNGEKRFVSNAPDADWFLVFARTD 52 (52)
T ss_dssp EEE--BTTBSSSGGG-SSEEEEETTEEEEEEEEEEEETTTTESEEEEEEEES
T ss_pred CEEEcCCCCCCCcccCEEEeecccceEEEeeEEEEECCcCccCEEEEEEEEC
Confidence 6899999999999999999999999999999999999999999999999973
No 93
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.41 E-value=4.7e-12 Score=126.26 Aligned_cols=195 Identities=15% Similarity=0.208 Sum_probs=128.5
Q ss_pred HHhhhHhhcCCc-eeEEecCCCCC-----CCcC--CCeeE-EEEeCCEEEEeeEEeeeeCCCCCcEEEEE-EEecCCCCc
Q psy5138 7 EKYLPRLAQTDA-GSFALSEPGSG-----SDAF--AMKTT-ATKDGNHYILNGSKMWISNADIANIFLVM-ANVDVSKGY 76 (575)
Q Consensus 7 ~~~l~~~~~g~~-~~~a~se~~~g-----~~~~--~~~~~-a~~~~~g~~l~G~k~~~t~~~~ad~~~v~-a~~~~~~~~ 76 (575)
.+|+..+.+..+ .+.|++.|..- +... .+-.. .++.++|.+|+|.|..+|+++.+|.++|+ .+.-..+..
T Consensus 134 ~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVvee~~dGIVVrGAK~~aT~~a~tdei~V~Pt~~~~~~d~ 213 (493)
T COG2368 134 REYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVEETEDGIVVRGAKALATGSALTDEIFVLPTRSMQEDDK 213 (493)
T ss_pred HHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEEEecCceEEEChHHHhccccccceEEEeeccccCCCCC
Confidence 578999999885 88999999621 1112 12233 34468999999999999999999998887 443322223
Q ss_pred cceeEEEEecCCCCeEEcccCccc-CC--CCC------------CceeEEeeeeEeCCCCcccC--CC--CcHHHHHHhh
Q psy5138 77 RGITCFIVERSMEGFSVGKKENKL-GM--KAS------------GTCSLHFDNVRVPEENIISG--VG--EGYKIAAGFL 137 (575)
Q Consensus 77 ~~~~~~~vp~~~~Gv~~~~~~~~~-g~--~~~------------~~~~v~f~~v~Vp~~~~l~~--~~--~g~~~~~~~~ 137 (575)
+--..|.+|+++|||+++...+.. +. .+. ..+-|.||||+||||+++-- .. ..+.....+.
T Consensus 214 dfAv~FaiP~dt~GvK~i~r~s~~~~~~~~~g~fd~plssrfde~dailVfDdVfVPWERVf~y~d~~~~~~~~~~~~Fa 293 (493)
T COG2368 214 DFAVAFAIPMDTEGVKFICRRSYELGRGAEGGPFDYPLSSRFDENDAILVFDDVFVPWERVFIYRDLERAYAWYAVSGFA 293 (493)
T ss_pred ceEEEEEcccCCCceEEEecCcchhhcccCCCCCCCccccccccCceEEEecccccchhheeeeccHHHHHHHHHHHHHH
Confidence 456789999999999998765432 21 112 12569999999999999832 22 2233333333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5138 138 NQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEA 211 (575)
Q Consensus 138 ~~~~~~~~a~~~G~~~~a~~~a~~~a~~r~~~g~~~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~ 211 (575)
.+.+...+.+..+-.+..+-.+..-++. ..+..|++ ||++|+||.+..+.+.++...++..-..
T Consensus 294 ~~~~~q~~~~k~~k~d~i~G~~~~~~~~-----~Gv~~~~h-----Iq~kl~Emi~~~e~~~al~~Aa~~~a~~ 357 (493)
T COG2368 294 RLHRQQAVGRKAVKLDFILGAAYLIAET-----NGVEEFRH-----IQEKLGEMIALLELMWALSDAAAEEAQK 357 (493)
T ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHh-----hCccchhh-----HHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3444444443333333333322222221 14567777 9999999999999999999998886543
No 94
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.32 E-value=6.8e-11 Score=122.73 Aligned_cols=188 Identities=16% Similarity=0.186 Sum_probs=121.4
Q ss_pred HHhhhHhhcCCc-eeEEecCCCCCC--Cc---CCCe-eEEEEeCCEEEEeeEEeeeeCCCCCcEEEE-EEEecC-CCCcc
Q psy5138 7 EKYLPRLAQTDA-GSFALSEPGSGS--DA---FAMK-TTATKDGNHYILNGSKMWISNADIANIFLV-MANVDV-SKGYR 77 (575)
Q Consensus 7 ~~~l~~~~~g~~-~~~a~se~~~g~--~~---~~~~-~~a~~~~~g~~l~G~k~~~t~~~~ad~~~v-~a~~~~-~~~~~ 77 (575)
.+|+..+.+..+ .+.+++.|..-- .+ .++- -..+++++|.+|+|.|...|+++.+|.++| ..+..- .+..+
T Consensus 139 ~~yy~~~qenDL~~~hA~~dPk~DRsk~p~e~~D~~v~VVee~~dGIVVrGAK~~aT~a~~a~ei~V~~~~~~~~~~d~d 218 (519)
T TIGR02310 139 RNWYKRIQESCLYFNHAIVNPPIDRNKPIDQVKDVYIKIEEERDDGIVVSGAKVVATNSALTHYNFIGFGSAQIIGDNDD 218 (519)
T ss_pred HHHHHHHHHhCceeecceeCCCCCCCCccccCCCCceEEEEEcCCcEEEeCHHHHhcccchhcceeeccCcccccCCCCC
Confidence 578888899885 889999996211 11 1111 234457899999999999999999999888 444311 11223
Q ss_pred ceeEEEEecCCCCeEEcccCccc----CCC-CC----------CceeEEeeeeEeCCCCcccCCC----CcHHHHHHhhh
Q psy5138 78 GITCFIVERSMEGFSVGKKENKL----GMK-AS----------GTCSLHFDNVRVPEENIISGVG----EGYKIAAGFLN 138 (575)
Q Consensus 78 ~~~~~~vp~~~~Gv~~~~~~~~~----g~~-~~----------~~~~v~f~~v~Vp~~~~l~~~~----~g~~~~~~~~~ 138 (575)
--..|.||.++|||++++..+.- +.. .. .-+-+.||||+||||+|+--.. ..+.....+..
T Consensus 219 yAvaFavP~dtpGlk~IcR~s~~~~~~~~~~~fD~PlssrfdE~Da~vVFDdVfVPWErVF~~gd~e~~~~~~~~~~~~~ 298 (519)
T TIGR02310 219 FALMFIAPMDAEGVKLICRHSYELVAGATGSPFDYPLSSRFDENDAILVMDSVFIPWENVLIYRDFERCRTWAQYGGFAR 298 (519)
T ss_pred eEEEEEeEcCCCceEEEeCCchhhccccCCCCCcCccccccCCceEEEEeCCcccchHHceecCCHHHHHhHHHhhhHHH
Confidence 34679999999999999765432 000 11 1278999999999999983221 01111111111
Q ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5138 139 Q-------GRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEA 211 (575)
Q Consensus 139 ~-------~~~~~~a~~~G~~~~a~~~a~~~a~~r~~~g~~~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~ 211 (575)
. ..+..+=..+|++..+.+.. .+.++++ ||++|++|....|.++++...+...-..
T Consensus 299 ~~~~q~~~r~~~k~dfl~G~a~~~ae~~------------G~~~~~h-----Vqekl~Eli~~~E~~~a~~~Aa~~~~~~ 361 (519)
T TIGR02310 299 LFPMQACTRLAVKLDFITGLLHKALQCT------------GVLEFRG-----VQAQMGEVVAWRNLFWTLTDAMAGSAYQ 361 (519)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh------------CcccchH-----HHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 1 11222223344444443322 3456777 9999999999999999999988776543
No 95
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=99.01 E-value=2.2e-09 Score=101.96 Aligned_cols=117 Identities=18% Similarity=0.246 Sum_probs=77.7
Q ss_pred HHhhhHhhcCCc-eeEEecCCCC--CCCc----CCCeeE-EEEeCCEEEEeeEEeeeeCCCCCcEEEEEEEec-CCCCcc
Q psy5138 7 EKYLPRLAQTDA-GSFALSEPGS--GSDA----FAMKTT-ATKDGNHYILNGSKMWISNADIANIFLVMANVD-VSKGYR 77 (575)
Q Consensus 7 ~~~l~~~~~g~~-~~~a~se~~~--g~~~----~~~~~~-a~~~~~g~~l~G~k~~~t~~~~ad~~~v~a~~~-~~~~~~ 77 (575)
.+|+..+.+..+ .+.+++.|.. +..+ ..+-.. .++.++|.+|+|.|...|+++.+|.++|+-... .....+
T Consensus 126 ~~y~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee~~dGIvVrGAK~~~T~a~~adei~V~p~~~~~~~d~d 205 (264)
T PF11794_consen 126 RRYYEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEETDDGIVVRGAKMLATGAPYADEILVFPTRAMRPGDED 205 (264)
T ss_dssp HHHHHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE-SSEEEEEEEEEEEETGCCSSEEEE--SSSSTTCCGG
T ss_pred HHHHHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEEcCCCEEEeChhhhhcCCcccccEEEeeccCCCCCCCc
Confidence 578888899885 8999999962 1111 112233 345789999999999999999999999974332 122234
Q ss_pred ceeEEEEecCCCCeEEcccCcccCCCC--CC----------ceeEEeeeeEeCCCCcc
Q psy5138 78 GITCFIVERSMEGFSVGKKENKLGMKA--SG----------TCSLHFDNVRVPEENII 123 (575)
Q Consensus 78 ~~~~~~vp~~~~Gv~~~~~~~~~g~~~--~~----------~~~v~f~~v~Vp~~~~l 123 (575)
-...|.||.++|||++++..+....+. .+ -+-|.||||+|||++++
T Consensus 206 yAv~FavP~~tpGlk~i~R~s~~~~~~~~~D~PlssrfdE~Da~vvFDdVfVPWeRVF 263 (264)
T PF11794_consen 206 YAVAFAVPMNTPGLKIICRESYADGRRSPFDHPLSSRFDEMDALVVFDDVFVPWERVF 263 (264)
T ss_dssp G-EEEEEETT-TTEEEEE---TTGCCG-TTT-TTTTS----EEEEEEEEEEEEGGGEE
T ss_pred eEEEEEccCCCCCEEEEeCCCCCCCccccCcCCcccccCCceEEEEECCcccchhhcc
Confidence 457899999999999998766544331 11 18899999999999886
No 96
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....
Probab=98.92 E-value=2.8e-08 Score=88.21 Aligned_cols=103 Identities=37% Similarity=0.580 Sum_probs=91.8
Q ss_pred CCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5138 127 GEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAA 206 (575)
Q Consensus 127 ~~g~~~~~~~~~~~~~~~~a~~~G~~~~a~~~a~~~a~~r~~~g~~~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~ 206 (575)
++||.+....+..+|+.+++..+|.++.+++.+.+|++.|++||+++.++|. ++++++++..+++++++++++++
T Consensus 1 g~G~~~~~~~l~~~R~~~~~~~~g~~~~~l~~a~~~~~~r~~~g~~l~~~~~-----v~~~la~~~~~~~a~~~~~~~~~ 75 (150)
T PF00441_consen 1 GQGWAVALDTLNHERLMIAAMALGIARRALDEAIEYARRRRQFGKPLAEHPA-----VRRRLADMAARLEAMRALVYRAA 75 (150)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEETTEEGGGSHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccchhh-----hHHHHHhhccchhhhhccccccc
Confidence 5799999999999999999999999999999999999999999999999887 99999999999999999999999
Q ss_pred HHhhcCCCchHHHHHHHHHHHHHHHHHHHh
Q psy5138 207 RLLEAGQPFIKQASMAKYFASVAKLAKETI 236 (575)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 236 (575)
..++.+.....+..+.|++ ..+...+..
T Consensus 76 ~~~~~~~~~~~~~a~~K~~--~t~~~~~~~ 103 (150)
T PF00441_consen 76 RRLDAGQNDPVEAAIAKYF--ATELAQDIA 103 (150)
T ss_dssp HHHHTTSSTHHHHHHHHHH--HHHHHHHHH
T ss_pred cccccccccccccchhhhh--cccccccch
Confidence 9999888777777777744 444444443
No 97
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=98.79 E-value=2e-08 Score=95.41 Aligned_cols=117 Identities=18% Similarity=0.216 Sum_probs=73.7
Q ss_pred Hhcccc-cCCCceeEEeecCCCC-CC-cc--cc--ceeE-EEEeCCEEEEeeeeccccCCccccEEEEEEEeCCCC-CCC
Q psy5138 269 EKYLPR-LAQTDAGSFALSEPGS-GS-DA--FA--MKTT-ATKDGNHYILNGSKMWISNADIANIFLVMANVDVSK-GYR 339 (575)
Q Consensus 269 ~~~l~~-~~~~~~~~~~~te~~~-gs-~~--~~--~~~~-a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a~~~~~~-~~~ 339 (575)
.+|+.. ...+...+.+++.|.. -| .. .. +-.+ ..+.++|.+|+|.|...|+++.+|.++|+....-.+ +..
T Consensus 126 ~~y~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee~~dGIvVrGAK~~~T~a~~adei~V~p~~~~~~~d~d 205 (264)
T PF11794_consen 126 RRYYEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEETDDGIVVRGAKMLATGAPYADEILVFPTRAMRPGDED 205 (264)
T ss_dssp HHHHHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE-SSEEEEEEEEEEEETGCCSSEEEE--SSSSTTCCGG
T ss_pred HHHHHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEEcCCCEEEeChhhhhcCCcccccEEEeeccCCCCCCCc
Confidence 346666 5667778889988762 11 11 11 1233 445789999999999999999999999997654332 333
Q ss_pred ceEEEEEeCCCCCeeecccCccCCCCC--cc----------ceeEEEcceeeCCCCcc
Q psy5138 340 GITCFIVERSMEGFSVGKKENKLGMKA--SG----------TCSLHFDNVRVPEENII 385 (575)
Q Consensus 340 ~~~~~lv~~~~~gv~i~~~~~~~G~rg--~~----------s~~l~f~~v~Vp~~~~l 385 (575)
-...|.||.++||+++.........+. .+ -+-+.|||||||+++++
T Consensus 206 yAv~FavP~~tpGlk~i~R~s~~~~~~~~~D~PlssrfdE~Da~vvFDdVfVPWeRVF 263 (264)
T PF11794_consen 206 YAVAFAVPMNTPGLKIICRESYADGRRSPFDHPLSSRFDEMDALVVFDDVFVPWERVF 263 (264)
T ss_dssp G-EEEEEETT-TTEEEEE---TTGCCG-TTT-TTTTS----EEEEEEEEEEEEGGGEE
T ss_pred eEEEEEccCCCCCEEEEeCCCCCCCccccCcCCcccccCCceEEEEECCcccchhhcc
Confidence 456899999999999976654443331 11 16799999999999986
No 98
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AFE_C 3AFF_A 2JBT_D 2JBS_C 2JBR_B 2RFQ_B 2OR0_B.
Probab=98.11 E-value=5.3e-05 Score=65.71 Aligned_cols=76 Identities=28% Similarity=0.397 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCCchH
Q psy5138 142 IGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLE----AGQPFIK 217 (575)
Q Consensus 142 ~~~~a~~~G~~~~a~~~a~~~a~~r~~~g~~~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~----~~~~~~~ 217 (575)
+.+++.++|+++++++.++++++.|... ....+..++|.+|.+++++.+.+++++.+++.+++.++ .+...++
T Consensus 1 L~~aa~~lG~A~~al~~~~~~~~~r~~~---~~~~~~~~~p~~q~~lgea~~~~~aa~~~l~~~~~~~~~~~~~g~~~~~ 77 (134)
T PF08028_consen 1 LSFAAVYLGIARGALDEFVEYLRGRVRA---SGGAPLADDPYIQARLGEAAARLDAARALLYRAARRLWEAADAGEELTP 77 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT---TTTSBCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----H
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCC---CCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCH
Confidence 4678999999999999999999998771 11222356777999999999999999999999999844 5555444
Q ss_pred HHH
Q psy5138 218 QAS 220 (575)
Q Consensus 218 ~~~ 220 (575)
+..
T Consensus 78 ~~~ 80 (134)
T PF08028_consen 78 EER 80 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 99
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
Probab=97.69 E-value=5.2e-05 Score=63.51 Aligned_cols=45 Identities=22% Similarity=0.395 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHhchhcCCccHHHHHHHHHhCC
Q psy5138 216 IKQASMAKYFASVAKLAKETIAPYVQKMESEEKIDETVLKTLFESGL 262 (575)
Q Consensus 216 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~ 262 (575)
++++..++ ..+++|+.+++.+.+.++|+.+.||+++|++|++.||
T Consensus 1 t~~~~~l~--~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~ 45 (113)
T PF02771_consen 1 TEEQQALR--EEAREFAEEEIAPHAAEWDEDGRFPREVWRALGEAGL 45 (113)
T ss_dssp SHHHHHHH--HHHHHHHHHHTHHHHHHHHHHTSCHHHHHHHHHHTTT
T ss_pred CHHHHHHH--HHHHHHHHHHchHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 35677777 8999999999999999999888999999999999998
No 100
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. This domain is also found in pyoverdin chromophore biosynthetic protein PvcC, which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=97.39 E-value=0.0052 Score=57.08 Aligned_cols=130 Identities=18% Similarity=0.179 Sum_probs=89.4
Q ss_pred ccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCC
Q psy5138 433 HRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAG-----QPFIKQASMAKYFASEMAGHITRQCIDWMGGLGFTKDY 507 (575)
Q Consensus 433 ~~l~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~~~-----~~~~~~~~~ak~~~~~~~~~~~~~~~~~~G~~~~~~~~ 507 (575)
..+.++|+||++|+|+...++..++++..+....... .|+......+|.+..+...++++.+.+++||.-+. .
T Consensus 42 ~G~~~~~hVqekl~Eli~~~E~~~a~~~Aae~~a~~~~~G~~~P~~~~~~a~r~~~~~~y~r~~eil~~l~gg~li~--~ 119 (205)
T PF03241_consen 42 NGIDKFPHVQEKLGELIAYLETLRALLIAAEAEAEPDPSGVYVPNPLPLNAARNYFPKNYPRIVEILQDLGGGGLIT--L 119 (205)
T ss_dssp TTGTTSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE-TTSSEE--HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTC---
T ss_pred hCCccchHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCeEeECHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeee--C
Confidence 3467899999999999999999999999888766543 25677899999999999999999999997776665 5
Q ss_pred cchhhhhhhhcccccccccccccccc-cccCCC--hHHHHhhhhcccee----------ccchHHHHHHHHHHH
Q psy5138 508 PQEKFYRDCKMAGHITRQCIDWMGGL-GFTKDY--PQEKYYRDCKVGTI----------YEGTSNIQLSTIAKY 568 (575)
Q Consensus 508 p~~R~~RD~~~~~~~~~~~~~~~Gg~-g~~~~~--~~~~~~rd~~~~~~----------~~G~~~~~~~~i~~~ 568 (575)
|.++-|+|......+. +- +-|. ++..+. .+-++..|+....+ +.|++..++..+-+.
T Consensus 120 Ps~~Df~npe~~~~l~-kY---l~g~~~~~aeeR~rl~rLawDl~~s~fg~r~~~ye~~~~G~p~~~~~~~~~~ 189 (205)
T PF03241_consen 120 PSEADFDNPEIGPYLD-KY---LQGANGVSAEERVRLFRLAWDLTGSEFGGRQELYERFYAGSPVRQRIMLYRS 189 (205)
T ss_dssp --HHHHH-TTTHHHHH-HH---T-BTTTC-HHHHHHHHHHHHHHHTSHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred CCHHHhCCcchhHHHH-HH---hcccCCCCHHHHHHHHHHHHHHhcCcchhhhHhhhhhcCCCHHHHHHHHHHH
Confidence 6666676554443211 11 2233 554443 35677777766643 788998888876554
No 101
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. This domain is also found in pyoverdin chromophore biosynthetic protein PvcC, which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=84.37 E-value=18 Score=33.68 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=28.4
Q ss_pred cccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5138 172 RIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEA 211 (575)
Q Consensus 172 ~~~~~q~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~ 211 (575)
.+.++++ ||++|+|+....|..++++..+...-..
T Consensus 43 G~~~~~h-----Vqekl~Eli~~~E~~~a~~~Aae~~a~~ 77 (205)
T PF03241_consen 43 GIDKFPH-----VQEKLGELIAYLETLRALLIAAEAEAEP 77 (205)
T ss_dssp TGTTSHH-----HHHHHHHHHHHHHHHHHHHHHHHHT-EE
T ss_pred CCccchH-----HHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 3456666 9999999999999999999988776543
No 102
>CHL00173 cpeA phycoerythrin alpha subunit; Provisional
Probab=20.96 E-value=3.6e+02 Score=24.06 Aligned_cols=87 Identities=23% Similarity=0.310 Sum_probs=47.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH--HhhcCCCCCCcCCcchhhh
Q psy5138 436 FDFQSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQC--IDWMGGLGFTKDYPQEKFY 513 (575)
Q Consensus 436 ~~~~~~~~~la~~~~~~~aar~~~~~a~~~~~~~~~~~~~~~~ak~~~~~~~~~~~~~~--~~~~G~~~~~~~~p~~R~~ 513 (575)
.+.+.++..+.+...++++++.+..++...+++ ....+...- +..-|| ..+.+...+..|
T Consensus 22 ~eL~~l~~~~~~a~~rl~aa~~L~~na~~iV~~-----------------A~~~l~~~~P~l~~pGG-~~y~~~r~aaC~ 83 (164)
T CHL00173 22 SDLESVQGNIQRAAARLEAAEKLASNHEAVVKE-----------------AGDACFAKYSYLKNPGE-AGDSQEKVNKCY 83 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHCCCCCCCCC-CCccchHHHHHH
Confidence 355677777777778787777766555443322 111111111 112244 445555588888
Q ss_pred hhhhcccccccccccccccccccCCChH
Q psy5138 514 RDCKMAGHITRQCIDWMGGLGFTKDYPQ 541 (575)
Q Consensus 514 RD~~~~~~~~~~~~~~~Gg~g~~~~~~~ 541 (575)
||+..-.....=|+= +|+.+.+++..+
T Consensus 84 RD~~~yLR~itY~l~-aG~~~~lde~gl 110 (164)
T CHL00173 84 RDVDHYMRLVNYCLV-VGGTGPVDEWGI 110 (164)
T ss_pred HHHHHHHHHHHHHHh-cCCCccccHHHH
Confidence 888766632221211 578887766543
Done!