RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5138
(575 letters)
>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and
eukaryotic short/branched chain acyl-CoA dehydrogenases.
Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a
mitochondrial beta-oxidation enzyme. It catalyzes the
alpha,beta dehydrogenation of the corresponding
trans-enoyl-CoA by FAD, which becomes reduced. The
reduced form of SCAD is reoxidized in the oxidative
half-reaction by electron-transferring flavoprotein
(ETF), from which the electrons are transferred to the
mitochondrial respiratory chain coupled with ATP
synthesis. This subgroup also contains the eukaryotic
short/branched chain acyl-CoA dehydrogenase(SBCAD), the
bacterial butyryl-CoA dehydorgenase(BCAD) and
2-methylbutyryl-CoA dehydrogenase, which is involved in
isoleucine catabolism. These enzymes are homotetramers.
Length = 373
Score = 447 bits (1151), Expect = e-154
Identities = 176/397 (44%), Positives = 225/397 (56%), Gaps = 84/397 (21%)
Query: 227 SVAKLAKETIAPYVQKMESEEKIDETVLKTLFESGL------------------------ 262
+V A++ IAP +M+ + + V+K + E GL
Sbjct: 9 TVRDFAEKEIAPLAAEMDEKGEFPREVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIE 68
Query: 263 ---------------------------GTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDA 294
GT EQK+KYLP LA + G+FALSEPG+GSDA
Sbjct: 69 ELAKVDASVAVIVSVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDA 128
Query: 295 FAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGYRGITCFIVERSMEGFS 354
A+KTTA KDG+ Y+LNGSKMWI+N A+ ++V A D SKGYRGIT FIVER G S
Sbjct: 129 AALKTTAKKDGDDYVLNGSKMWITNGGEADFYIVFAVTDPSKGYRGITAFIVERDTPGLS 188
Query: 355 VGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLA 414
VGKKE+KLG++ S T L F++VRVP+ENI+ GEG+KIA L+ GRIGIAAQ G+A
Sbjct: 189 VGKKEDKLGIRGSSTTELIFEDVRVPKENILGEEGEGFKIAMQTLDGGRIGIAAQALGIA 248
Query: 415 QGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQPFIK 474
Q LDA + Y ER QFG I DFQ +Q +++ AT++E ARLLTY AARL + G+PFIK
Sbjct: 249 QAALDAAVDYAKERKQFGKPIADFQGIQFKLADMATEIEAARLLTYKAARLKDNGEPFIK 308
Query: 475 QASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLG 534
+A+MAK FASE +A +T + GG G
Sbjct: 309 EAAMAKLFASE--------------------------------VAMRVTTDAVQIFGGYG 336
Query: 535 FTKDYPQEKYYRDCKVGTIYEGTSNIQLSTIAKYIAK 571
+TKDYP E+YYRD K+ IYEGTS IQ IAK++ K
Sbjct: 337 YTKDYPVERYYRDAKITEIYEGTSEIQRLVIAKHLLK 373
Score = 351 bits (904), Expect = e-117
Identities = 133/227 (58%), Positives = 165/227 (72%), Gaps = 6/227 (2%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 60
T EQK+KYLP LA + G+FALSEPG+GSDA A+KTTA KDG+ Y+LNGSKMWI+N
Sbjct: 97 TEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGE 156
Query: 61 ANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEE 120
A+ ++V A D SKGYRGIT FIVER G SVGKKE+KLG++ S T L F++VRVP+E
Sbjct: 157 ADFYIVFAVTDPSKGYRGITAFIVERDTPGLSVGKKEDKLGIRGSSTTELIFEDVRVPKE 216
Query: 121 NIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACN 180
NI+ GEG+KIA L+ GRIGIAAQ G+AQ LDA + Y ER Q G I DFQ
Sbjct: 217 NILGEEGEGFKIAMQTLDGGRIGIAAQALGIAQAALDAAVDYAKERKQFGKPIADFQ--- 273
Query: 181 GGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFAS 227
+Q +++ T++E ARLLTY AARL + G+PFIK+A+MAK FAS
Sbjct: 274 --GIQFKLADMATEIEAARLLTYKAARLKDNGEPFIKEAAMAKLFAS 318
>gnl|CDD|173838 cd00567, ACAD, Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA
dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases
(AXO) catalyze the alpha,beta dehydrogenation of the
corresponding trans-enoyl-CoA by FAD, which becomes
reduced. The reduced form of ACAD is reoxidized in the
oxidative half-reaction by electron-transferring
flavoprotein (ETF), from which the electrons are
transferred to the mitochondrial respiratory chain
coupled with ATP synthesis. In contrast, AXO catalyzes
a different oxidative half-reaction, in which the
reduced FAD is reoxidized by molecular oxygen. The ACAD
family includes the eukaryotic beta-oxidation enzymes,
short (SCAD), medium (MCAD), long (LCAD) and very-long
(VLCAD) chain acyl-CoA dehydrogenases. These enzymes all
share high sequence similarity, but differ in their
substrate specificities. The ACAD family also includes
amino acid catabolism enzymes such as Isovaleryl-CoA
dehydrogenase (IVD), short/branched chain acyl-CoA
dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase
(IBDH), glutaryl-CoA deydrogenase (GCD) and
Crotonobetainyl-CoA dehydrogenase. The mitochondrial
ACAD's are generally homotetramers, except for VLCAD,
which is a homodimer. Related enzymes include the SOS
adaptive reponse proten aidB, Naphthocyclinone
hydroxylase (NcnH), and and Dibenzothiophene (DBT)
desulfurization enzyme C (DszC).
Length = 327
Score = 323 bits (830), Expect = e-107
Identities = 132/352 (37%), Positives = 195/352 (55%), Gaps = 42/352 (11%)
Query: 226 ASVAKLAKETIAPYVQKMESEEKIDETVLKTLFESG-------LGTTEQKEKYLPRLAQT 278
S + A E + PY ++ + +L L GT EQKE+YLP LA
Sbjct: 8 DSAREFAAEELEPYARERRETPEEPWELLAELGLLLGAALLLAYGTEEQKERYLPPLASG 67
Query: 279 DA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVS-K 336
+A +FAL+EPG+GSD ++TTA KDG+ Y+LNG K++ISN A++F+V+A D
Sbjct: 68 EAIAAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADLFIVLARTDEEGP 127
Query: 337 GYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAA 396
G+RGI+ F+V G +VG+ +K+GM+ SGT L FD+VRVPE+N++ G G+++A
Sbjct: 128 GHRGISAFLVPADTPGVTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGGFELAM 187
Query: 397 GFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECAR 456
LN GR+ +AA G A+ LD + Y +R QFG + +FQ+VQ +++ A ++E AR
Sbjct: 188 KGLNVGRLLLAAVALGAARAALDEAVEYAKQRKQFGKPLAEFQAVQFKLADMAAELEAAR 247
Query: 457 LLTYNAARLLEAGQPFI-KQASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRD 515
LL Y AA LL+ G +A+MAK FA+E A R+ D
Sbjct: 248 LLLYRAAWLLDQGPDEARLEAAMAKLFATEAA----REVAD------------------- 284
Query: 516 CKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNIQLSTIAK 567
+ GG G++++YP E+Y RD + I EGT+ IQ IA+
Sbjct: 285 ---------LAMQIHGGRGYSREYPVERYLRDARAARIAEGTAEIQRLIIAR 327
Score = 262 bits (673), Expect = 2e-83
Identities = 103/231 (44%), Positives = 149/231 (64%), Gaps = 8/231 (3%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 60
T EQKE+YLP LA +A +FAL+EPG+GSD ++TTA KDG+ Y+LNG K++ISN
Sbjct: 53 TEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGD 112
Query: 61 ANIFLVMANVDVS-KGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPE 119
A++F+V+A D G+RGI+ F+V G +VG+ +K+GM+ SGT L FD+VRVPE
Sbjct: 113 ADLFIVLARTDEEGPGHRGISAFLVPADTPGVTVGRIWDKMGMRGSGTGELVFDDVRVPE 172
Query: 120 ENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQAC 179
+N++ G G+++A LN GR+ +AA G A+ LD + Y +R Q G + +FQA
Sbjct: 173 DNLLGEEGGGFELAMKGLNVGRLLLAAVALGAARAALDEAVEYAKQRKQFGKPLAEFQA- 231
Query: 180 NGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFI-KQASMAKYFASVA 229
VQ +++ ++E ARLL Y AA LL+ G +A+MAK FA+ A
Sbjct: 232 ----VQFKLADMAAELEAARLLLYRAAWLLDQGPDEARLEAAMAKLFATEA 278
>gnl|CDD|224871 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].
Length = 393
Score = 296 bits (760), Expect = 2e-95
Identities = 129/317 (40%), Positives = 183/317 (57%), Gaps = 36/317 (11%)
Query: 263 GTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTT-ATKDGNHYILNGSKMWISNA 320
GT EQK +YLPRLA + G+FAL+EPG+GSD +++TT A +D Y+LNG K+WISNA
Sbjct: 108 GTEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQKIWISNA 167
Query: 321 DIANIFLVMANVDVSKG-YRGITCFIVER-SMEGFSVGKKENKLGMKASGTCSLHFDNVR 378
+A+ LV+A D + G ++GI+ F+V + G SVG K+G++ S T + FD+VR
Sbjct: 168 PVADWLLVLARTDPAPGKHKGISLFLVPKDLTPGVSVGPILKKMGLRGSATGEVFFDDVR 227
Query: 379 VPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDF 438
VP EN++ G+G+KIA LN R+GIAAQ G+A+ L+ + Y ER QFG I DF
Sbjct: 228 VPAENLLGEEGDGFKIAMETLNVERLGIAAQALGIAEAALEEAVAYARERKQFGRPIADF 287
Query: 439 QSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWM 498
Q VQ +++ A ++E ARLL AA L +AG +A+MAK FA+E
Sbjct: 288 QLVQFKLADMAAELEAARLLVLRAAELADAGDDAGAEAAMAKLFATE------------- 334
Query: 499 GGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTS 558
A + + + GG G+T++YP E+YYRD ++ IYEGTS
Sbjct: 335 -------------------AALEVADEAVQVHGGYGYTEEYPVERYYRDARILRIYEGTS 375
Query: 559 NIQLSTIAKYIAKEYTS 575
IQ IA+ +
Sbjct: 376 EIQRLIIARRLLGLPAG 392
Score = 240 bits (613), Expect = 1e-73
Identities = 103/230 (44%), Positives = 146/230 (63%), Gaps = 9/230 (3%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTT-ATKDGNHYILNGSKMWISNAD 59
T EQK +YLPRLA + G+FAL+EPG+GSD +++TT A +D Y+LNG K+WISNA
Sbjct: 109 TEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQKIWISNAP 168
Query: 60 IANIFLVMANVDVSKG-YRGITCFIVER-SMEGFSVGKKENKLGMKASGTCSLHFDNVRV 117
+A+ LV+A D + G ++GI+ F+V + G SVG K+G++ S T + FD+VRV
Sbjct: 169 VADWLLVLARTDPAPGKHKGISLFLVPKDLTPGVSVGPILKKMGLRGSATGEVFFDDVRV 228
Query: 118 PEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQ 177
P EN++ G+G+KIA LN R+GIAAQ G+A+ L+ + Y ER Q G I DFQ
Sbjct: 229 PAENLLGEEGDGFKIAMETLNVERLGIAAQALGIAEAALEEAVAYARERKQFGRPIADFQ 288
Query: 178 ACNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFAS 227
VQ +++ ++E ARLL AA L +AG +A+MAK FA+
Sbjct: 289 L-----VQFKLADMAAELEAARLLVLRAAELADAGDDAGAEAAMAKLFAT 333
>gnl|CDD|173845 cd01156, IVD, Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA
dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase,
which catalyzes the third step in leucine catabolism,
the conversion of isovaleryl-CoA (3-methylbutyryl-CoA)
into 3-methylcrotonyl-CoA. IVD is a homotetramer and has
the greatest affinity for small branched chain
substrates.
Length = 376
Score = 262 bits (671), Expect = 2e-82
Identities = 106/257 (41%), Positives = 149/257 (57%), Gaps = 1/257 (0%)
Query: 263 GTTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 321
G+ QKEKYLP+L + G+ A+SEP +GSD +MK A K G+ Y+LNGSKMWI+N
Sbjct: 99 GSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGP 158
Query: 322 IANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPE 381
A+ +V A D S G GIT FIVE+ M GFS +K +KLGM+ S TC L F++ VPE
Sbjct: 159 DADTLVVYAKTDPSAGAHGITAFIVEKGMPGFSRAQKLDKLGMRGSNTCELVFEDCEVPE 218
Query: 382 ENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSV 441
ENI+ G +G + L+ R+ +A G+ Q LD IPY +R QFG I +FQ V
Sbjct: 219 ENILGGENKGVYVLMSGLDYERLVLAGGPIGIMQAALDVAIPYAHQRKQFGQPIGEFQLV 278
Query: 442 QHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMGGL 501
Q +++ T++ +R Y A+ + G K A+ +A+E A + I +GG
Sbjct: 279 QGKLADMYTRLNASRSYLYTVAKACDRGNMDPKDAAGVILYAAEKATQVALDAIQILGGN 338
Query: 502 GFTKDYPQEKFYRDCKM 518
G+ DYP + RD K+
Sbjct: 339 GYINDYPTGRLLRDAKL 355
Score = 221 bits (566), Expect = 5e-67
Identities = 102/281 (36%), Positives = 151/281 (53%), Gaps = 16/281 (5%)
Query: 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 60
+ QKEKYLP+L + G+ A+SEP +GSD +MK A K G+ Y+LNGSKMWI+N
Sbjct: 100 SAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGPD 159
Query: 61 ANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEE 120
A+ +V A D S G GIT FIVE+ M GFS +K +KLGM+ S TC L F++ VPEE
Sbjct: 160 ADTLVVYAKTDPSAGAHGITAFIVEKGMPGFSRAQKLDKLGMRGSNTCELVFEDCEVPEE 219
Query: 121 NIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACN 180
NI+ G +G + L+ R+ +A G+ Q LD IPY +R Q G I +FQ
Sbjct: 220 NILGGENKGVYVLMSGLDYERLVLAGGPIGIMQAALDVAIPYAHQRKQFGQPIGEFQL-- 277
Query: 181 GGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFAS--VAKLAKETIA- 237
VQ +++ T++ +R Y A+ + G K A+ +A+ ++A + I
Sbjct: 278 ---VQGKLADMYTRLNASRSYLYTVAKACDRGNMDPKDAAGVILYAAEKATQVALDAIQI 334
Query: 238 ----PYVQKMESEEKIDETVLKTLFESGLGTTEQKEKYLPR 274
Y+ + + + L+E G GT+E + + R
Sbjct: 335 LGGNGYINDYPTGRLLRDAK---LYEIGAGTSEIRRMVIGR 372
>gnl|CDD|173850 cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase. VLCAD is
an acyl-CoA dehydrogenase (ACAD), which is found in the
mitochondria of eukaryotes and in some bacteria. It
catalyzes the alpha,beta dehydrogenation of the
corresponding trans-enoyl-CoA by FAD, which becomes
reduced. The reduced form of ACAD is reoxidized in the
oxidative half-reaction by electron-transferring
flavoprotein (ETF), from which the electrons are
transferred to the mitochondrial respiratory chain
coupled with ATP synthesis. VLCAD acts as a homodimer.
Length = 409
Score = 252 bits (646), Expect = 2e-78
Identities = 112/320 (35%), Positives = 171/320 (53%), Gaps = 41/320 (12%)
Query: 263 GTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATK--DGNHYILNGSKMWISN 319
GT QKEKYLP+LA + +FAL+EP SGSDA +++TTA DG HY+LNGSK+WI+N
Sbjct: 121 GTEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTTAVLSEDGKHYVLNGSKIWITN 180
Query: 320 ADIANIFLVMANVDVSKGY----RGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFD 375
IA+IF V A +V IT FIVERS G + G E K+G+K S T ++F+
Sbjct: 181 GGIADIFTVFAKTEVKDATGSVKDKITAFIVERSFGGVTNGPPEKKMGIKGSNTAEVYFE 240
Query: 376 NVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRI 435
+V++P EN++ VG+G+K+A LN GR G+ A + G + C++ + Y R QFG +I
Sbjct: 241 DVKIPVENVLGEVGDGFKVAMNILNNGRFGMGAALIGTMKRCIEKAVDYANNRKQFGKKI 300
Query: 436 FDFQSVQHQISQAATQVECARLLTYNAARLLEAG--QPFIKQASMAKYFASEMAGHITRQ 493
+F +Q +++ A + Y + ++ G + +A+++K FASE A
Sbjct: 301 HEFGLIQEKLANMAILQYATESMAYMTSGNMDRGLKAEYQIEAAISKVFASEAA------ 354
Query: 494 CIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTI 553
W+ + + I GG+GF ++Y E+ RD ++ I
Sbjct: 355 ---WL-----------------------VVDEAIQIHGGMGFMREYGVERVLRDLRIFRI 388
Query: 554 YEGTSNIQLSTIAKYIAKEY 573
+EGT+ I IA +
Sbjct: 389 FEGTNEILRLFIALTGLQHA 408
Score = 206 bits (527), Expect = 5e-61
Identities = 92/237 (38%), Positives = 139/237 (58%), Gaps = 14/237 (5%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATK--DGNHYILNGSKMWISNA 58
T QKEKYLP+LA + +FAL+EP SGSDA +++TTA DG HY+LNGSK+WI+N
Sbjct: 122 TEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTTAVLSEDGKHYVLNGSKIWITNG 181
Query: 59 DIANIFLVMANVDVSKGY----RGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDN 114
IA+IF V A +V IT FIVERS G + G E K+G+K S T ++F++
Sbjct: 182 GIADIFTVFAKTEVKDATGSVKDKITAFIVERSFGGVTNGPPEKKMGIKGSNTAEVYFED 241
Query: 115 VRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIF 174
V++P EN++ VG+G+K+A LN GR G+ A + G + C++ + Y R Q G +I
Sbjct: 242 VKIPVENVLGEVGDGFKVAMNILNNGRFGMGAALIGTMKRCIEKAVDYANNRKQFGKKIH 301
Query: 175 DFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAG--QPFIKQASMAKYFASVA 229
+F G +Q +++ + Y + ++ G + +A+++K FAS A
Sbjct: 302 EF-----GLIQEKLANMAILQYATESMAYMTSGNMDRGLKAEYQIEAAISKVFASEA 353
>gnl|CDD|173851 cd01162, IBD, Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA
dehydrogenase (IBD) catalyzes the alpha, beta-
dehydrogenation of short branched chain acyl-CoA
intermediates in valine catabolism. It is predicted to
be a homotetramer.
Length = 375
Score = 237 bits (606), Expect = 8e-73
Identities = 119/312 (38%), Positives = 174/312 (55%), Gaps = 35/312 (11%)
Query: 263 GTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 321
G EQ+E++LP L + S+ L+EPGSGSDA A++T A ++G+HY+LNGSK +IS A
Sbjct: 97 GNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAG 156
Query: 322 IANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPE 381
+++++VMA +G +GI+CF+VE+ G S G E K+G A T ++ F++ RVP
Sbjct: 157 DSDVYVVMARTG-GEGPKGISCFVVEKGTPGLSFGANEKKMGWNAQPTRAVIFEDCRVPV 215
Query: 382 ENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSV 441
EN + G G+G+ IA LN GR+ IA+ G AQ LD Y ER QFG + DFQ++
Sbjct: 216 ENRLGGEGQGFGIAMAGLNGGRLNIASCSLGAAQAALDLARAYLEERKQFGKPLADFQAL 275
Query: 442 QHQISQAATQVECARLLTYNAARLLEAGQP-FIKQASMAKYFASEMAGHITRQCIDWMGG 500
Q +++ AT++ +RL+ AA L+ G P +K +MAK FA T +C D
Sbjct: 276 QFKLADMATELVASRLMVRRAASALDRGDPDAVKLCAMAKRFA-------TDECFD---- 324
Query: 501 LGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNI 560
+ Q + GG G+ KDYP E+Y RD +V I EGT+ I
Sbjct: 325 ---------------------VANQALQLHGGYGYLKDYPVEQYVRDLRVHQILEGTNEI 363
Query: 561 QLSTIAKYIAKE 572
IA+ +
Sbjct: 364 MRLIIARALLTR 375
Score = 201 bits (512), Expect = 3e-59
Identities = 94/228 (41%), Positives = 140/228 (61%), Gaps = 8/228 (3%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 60
EQ+E++LP L + S+ L+EPGSGSDA A++T A ++G+HY+LNGSK +IS A
Sbjct: 98 NDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGD 157
Query: 61 ANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEE 120
+++++VMA +G +GI+CF+VE+ G S G E K+G A T ++ F++ RVP E
Sbjct: 158 SDVYVVMARTG-GEGPKGISCFVVEKGTPGLSFGANEKKMGWNAQPTRAVIFEDCRVPVE 216
Query: 121 NIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACN 180
N + G G+G+ IA LN GR+ IA+ G AQ LD Y ER Q G + DFQA
Sbjct: 217 NRLGGEGQGFGIAMAGLNGGRLNIASCSLGAAQAALDLARAYLEERKQFGKPLADFQA-- 274
Query: 181 GGSVQHQISQAVTQVECARLLTYNAARLLEAGQP-FIKQASMAKYFAS 227
+Q +++ T++ +RL+ AA L+ G P +K +MAK FA+
Sbjct: 275 ---LQFKLADMATELVASRLMVRRAASALDRGDPDAVKLCAMAKRFAT 319
>gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase. LCAD is an
acyl-CoA dehydrogenases (ACAD), which is found in the
mitochondria of eukaryotes and in some prokaryotes. It
catalyzes the alpha, beta dehydrogenation of the
corresponding trans-enoyl-CoA by FAD, which becomes
reduced. The reduced form of LCAD is reoxidized in the
oxidative half-reaction by electron-transferring
flavoprotein (ETF), from which the electrons are
transferred to the mitochondrial respiratory chain
coupled with ATP synthesis. LCAD acts as a homodimer.
Length = 372
Score = 229 bits (585), Expect = 7e-70
Identities = 101/259 (38%), Positives = 156/259 (60%), Gaps = 2/259 (0%)
Query: 262 LGTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNA 320
G+ EQKE+ LP++ G+ A++EPG+GSD ++TTA KDG+HY+LNGSK +I+N
Sbjct: 94 AGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNG 153
Query: 321 DIANIFLVMANVD-VSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRV 379
+A++ +V+A ++G GI+ F+VER GFS G+K K+G KA T L FD+ RV
Sbjct: 154 MLADVVIVVARTGGEARGAGGISLFLVERGTPGFSRGRKLKKMGWKAQDTAELFFDDCRV 213
Query: 380 PEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQ 439
P EN++ +G+ L Q R+ IAA A+ L+ T Y +R FG + Q
Sbjct: 214 PAENLLGEENKGFYYLMQNLPQERLLIAAGALAAAEFMLEETRNYVKQRKAFGKTLAQLQ 273
Query: 440 SVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMG 499
V+H+I++ AT+V R N A E G+ + +ASMAKY+A+E+ + +C+ G
Sbjct: 274 VVRHKIAELATKVAVTRAFLDNCAWRHEQGRLDVAEASMAKYWATELQNRVAYECVQLHG 333
Query: 500 GLGFTKDYPQEKFYRDCKM 518
G G+ ++YP + YRD ++
Sbjct: 334 GWGYMREYPIARAYRDARV 352
Score = 192 bits (489), Expect = 8e-56
Identities = 88/228 (38%), Positives = 133/228 (58%), Gaps = 7/228 (3%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 60
+ EQKE+ LP++ G+ A++EPG+GSD ++TTA KDG+HY+LNGSK +I+N +
Sbjct: 96 SPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGML 155
Query: 61 ANIFLVMANVD-VSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPE 119
A++ +V+A ++G GI+ F+VER GFS G+K K+G KA T L FD+ RVP
Sbjct: 156 ADVVIVVARTGGEARGAGGISLFLVERGTPGFSRGRKLKKMGWKAQDTAELFFDDCRVPA 215
Query: 120 ENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQAC 179
EN++ +G+ L Q R+ IAA A+ L+ T Y +R G + Q
Sbjct: 216 ENLLGEENKGFYYLMQNLPQERLLIAAGALAAAEFMLEETRNYVKQRKAFGKTLAQLQV- 274
Query: 180 NGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFAS 227
V+H+I++ T+V R N A E G+ + +ASMAKY+A+
Sbjct: 275 ----VRHKIAELATKVAVTRAFLDNCAWRHEQGRLDVAEASMAKYWAT 318
>gnl|CDD|215284 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase.
Length = 404
Score = 220 bits (563), Expect = 3e-66
Identities = 104/257 (40%), Positives = 151/257 (58%), Gaps = 1/257 (0%)
Query: 263 GTTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 321
GT QKEKYLP+L + G+ A+SEP SGSD +MK A + Y+LNG+KMW +N
Sbjct: 125 GTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCTNGP 184
Query: 322 IANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPE 381
+A +V A DV+ G +GIT FI+E+ M GFS +K +KLGM+ S TC L F+N VPE
Sbjct: 185 VAQTLVVYAKTDVAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPE 244
Query: 382 ENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSV 441
EN++ G+G + L+ R+ +AA GL Q CLD +PY +R QFG I +FQ +
Sbjct: 245 ENVLGQEGKGVYVMMSGLDLERLVLAAGPLGLMQACLDVVLPYVRQREQFGRPIGEFQFI 304
Query: 442 QHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMGGL 501
Q +++ T ++ +R Y+ AR + G+ K + A+E A + Q I +GG
Sbjct: 305 QGKLADMYTSLQSSRSYVYSVARDCDNGKVDRKDCAGVILCAAERATQVALQAIQCLGGN 364
Query: 502 GFTKDYPQEKFYRDCKM 518
G+ +YP + RD K+
Sbjct: 365 GYINEYPTGRLLRDAKL 381
Score = 186 bits (474), Expect = 2e-53
Identities = 102/272 (37%), Positives = 151/272 (55%), Gaps = 14/272 (5%)
Query: 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 60
T QKEKYLP+L + G+ A+SEP SGSD +MK A + Y+LNG+KMW +N +
Sbjct: 126 TPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCTNGPV 185
Query: 61 ANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEE 120
A +V A DV+ G +GIT FI+E+ M GFS +K +KLGM+ S TC L F+N VPEE
Sbjct: 186 AQTLVVYAKTDVAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEE 245
Query: 121 NIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACN 180
N++ G+G + L+ R+ +AA GL Q CLD +PY +R Q G I +FQ
Sbjct: 246 NVLGQEGKGVYVMMSGLDLERLVLAAGPLGLMQACLDVVLPYVRQREQFGRPIGEFQF-- 303
Query: 181 GGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFASVAKLAKETIAPYV 240
+Q +++ T ++ +R Y+ AR + G+ K + A A+ A + +
Sbjct: 304 ---IQGKLADMYTSLQSSRSYVYSVARDCDNGKVDRKDCAGVILCA--AERATQVALQAI 358
Query: 241 QKMESEEKIDE----TVLK--TLFESGLGTTE 266
Q + I+E +L+ L+E G GT+E
Sbjct: 359 QCLGGNGYINEYPTGRLLRDAKLYEIGAGTSE 390
>gnl|CDD|173840 cd01151, GCD, Glutaryl-CoA dehydrogenase. Glutaryl-CoA
dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase,
which catalyzes the oxidative decarboxylation of
glutaryl-CoA to crotonyl-CoA and carbon dioxide in the
catabolism of lysine, hydroxylysine, and tryptophan. It
uses electron transfer flavoprotein (ETF) as an electron
acceptor. GCD is a homotetramer. GCD deficiency leads to
a severe neurological disorder in humans.
Length = 386
Score = 209 bits (535), Expect = 2e-62
Identities = 98/247 (39%), Positives = 135/247 (54%), Gaps = 5/247 (2%)
Query: 263 GTTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 321
G+ EQK+KYLP+LA + G F L+EP GSD M+T A KDG Y LNGSK WI+N+
Sbjct: 109 GSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWITNSP 168
Query: 322 IANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPE 381
IA++F+V A D + RG FI+ER M+G S K + K ++AS T + DNV VPE
Sbjct: 169 IADVFVVWARNDETGKIRG---FILERGMKGLSAPKIQGKFSLRASITGEIVMDNVFVPE 225
Query: 382 ENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSV 441
EN++ G EG + LN R GIA G A+ C Y L+R QFG + FQ V
Sbjct: 226 ENLLPGA-EGLRGPFKCLNNARYGIAWGALGAAEDCYHTARQYVLDRKQFGRPLAAFQLV 284
Query: 442 QHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMGGL 501
Q +++ T++ L RL + G+ +Q S+ K A I R + +GG
Sbjct: 285 QKKLADMLTEIALGLLACLRVGRLKDQGKATPEQISLLKRNNCGKALEIARTAREMLGGN 344
Query: 502 GFTKDYP 508
G + +Y
Sbjct: 345 GISDEYH 351
Score = 187 bits (478), Expect = 5e-54
Identities = 92/237 (38%), Positives = 128/237 (54%), Gaps = 15/237 (6%)
Query: 4 EQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIAN 62
EQK+KYLP+LA + G F L+EP GSD M+T A KDG Y LNGSK WI+N+ IA+
Sbjct: 112 EQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWITNSPIAD 171
Query: 63 IFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENI 122
+F+V A D + RG FI+ER M+G S K + K ++AS T + DNV VPEEN+
Sbjct: 172 VFVVWARNDETGKIRG---FILERGMKGLSAPKIQGKFSLRASITGEIVMDNVFVPEENL 228
Query: 123 ISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACNGG 182
+ G EG + LN R GIA G A+ C Y L+R Q G + FQ
Sbjct: 229 LPGA-EGLRGPFKCLNNARYGIAWGALGAAEDCYHTARQYVLDRKQFGRPLAAFQL---- 283
Query: 183 SVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFAS-----VAKLAKE 234
VQ +++ +T++ L RL + G+ +Q S+ K +A+ A+E
Sbjct: 284 -VQKKLADMLTEIALGLLACLRVGRLKDQGKATPEQISLLKRNNCGKALEIARTARE 339
>gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase. MCADs are
mitochondrial beta-oxidation enzymes, which catalyze the
alpha,beta dehydrogenation of the corresponding medium
chain acyl-CoA by FAD, which becomes reduced. The
reduced form of MCAD is reoxidized in the oxidative
half-reaction by electron-transferring flavoprotein
(ETF), from which the electrons are transferred to the
mitochondrial respiratory chain coupled with ATP
synthesis. MCAD is a homotetramer.
Length = 378
Score = 205 bits (522), Expect = 1e-60
Identities = 115/312 (36%), Positives = 164/312 (52%), Gaps = 42/312 (13%)
Query: 263 GTTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 321
G EQK+KYL R+ + ++ ++EPG+GSD +KT A K G+ YI+NG KMWI+N
Sbjct: 97 GNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGG 156
Query: 322 IANIFLVMANVD------VSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFD 375
AN + ++A D SK + G FIVE G G+KE +G + S T + F+
Sbjct: 157 KANWYFLLARSDPDPKCPASKAFTG---FIVEADTPGIQPGRKELNMGQRCSDTRGITFE 213
Query: 376 NVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRI 435
+VRVP+EN++ G G G+KIA G ++ R +AA GLAQ LD Y LER FG I
Sbjct: 214 DVRVPKENVLIGEGAGFKIAMGAFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLI 273
Query: 436 FDFQSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCI 495
+ Q+V ++ A +VE ARL AA +++G+ AS+AK FA+++A + +
Sbjct: 274 AEHQAVSFMLADMAMKVELARLAYQRAAWEVDSGRRNTYYASIAKAFAADIANQLATDAV 333
Query: 496 DWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYE 555
GG GF +YP EK RD K+ Y+ IYE
Sbjct: 334 QIFGGNGFNSEYPVEKLMRDAKI--------------------------YQ------IYE 361
Query: 556 GTSNIQLSTIAK 567
GTS IQ I++
Sbjct: 362 GTSQIQRLIISR 373
Score = 165 bits (420), Expect = 7e-46
Identities = 91/231 (39%), Positives = 130/231 (56%), Gaps = 15/231 (6%)
Query: 4 EQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIAN 62
EQK+KYL R+ + ++ ++EPG+GSD +KT A K G+ YI+NG KMWI+N AN
Sbjct: 100 EQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKAN 159
Query: 63 IFLVMANVD------VSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVR 116
+ ++A D SK + G FIVE G G+KE +G + S T + F++VR
Sbjct: 160 WYFLLARSDPDPKCPASKAFTG---FIVEADTPGIQPGRKELNMGQRCSDTRGITFEDVR 216
Query: 117 VPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDF 176
VP+EN++ G G G+KIA G ++ R +AA GLAQ LD Y LER G I +
Sbjct: 217 VPKENVLIGEGAGFKIAMGAFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLIAEH 276
Query: 177 QACNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFAS 227
QA V ++ +VE ARL AA +++G+ AS+AK FA+
Sbjct: 277 QA-----VSFMLADMAMKVELARLAYQRAAWEVDSGRRNTYYASIAKAFAA 322
>gnl|CDD|185640 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional.
Length = 410
Score = 196 bits (499), Expect = 6e-57
Identities = 94/257 (36%), Positives = 147/257 (57%), Gaps = 7/257 (2%)
Query: 264 TTEQKEKYLPR-LAQTDAGSFALSEPGSGSDAFAMKTTATKDGN-HYILNGSKMWISNAD 321
+ Q+ ++LP+ L G+ +SEPG+G+D M+TTA KD N +Y+LNGSK+WI+N
Sbjct: 135 SPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITNGT 194
Query: 322 IANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPE 381
+A++FL+ A VD IT F+VER +GF+ G K +K GM+AS C L F++V VP
Sbjct: 195 VADVFLIYAKVDGK-----ITAFVVERGTKGFTQGPKIDKCGMRASHMCQLFFEDVVVPA 249
Query: 382 ENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSV 441
EN++ G+G L R+ +AA G+A+ ++ Y ER FG I +F +
Sbjct: 250 ENLLGEEGKGMVGMMRNLELERVTLAAMAVGIAERSVELMTSYASERKAFGKPISNFGQI 309
Query: 442 QHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMGGL 501
Q I++ E A+ L Y+ + + G + AK FA+ +A + I MGG+
Sbjct: 310 QRYIAEGYADTEAAKALVYSVSHNVHPGNKNRLGSDAAKLFATPIAKKVADSAIQVMGGM 369
Query: 502 GFTKDYPQEKFYRDCKM 518
G+++D P E+ +RD K+
Sbjct: 370 GYSRDMPVERLWRDAKL 386
Score = 165 bits (419), Expect = 2e-45
Identities = 94/278 (33%), Positives = 143/278 (51%), Gaps = 22/278 (7%)
Query: 2 TTEQKEKYLPR-LAQTDAGSFALSEPGSGSDAFAMKTTATKDGN-HYILNGSKMWISNAD 59
+ Q+ ++LP+ L G+ +SEPG+G+D M+TTA KD N +Y+LNGSK+WI+N
Sbjct: 135 SPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITNGT 194
Query: 60 IANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPE 119
+A++FL+ A VD IT F+VER +GF+ G K +K GM+AS C L F++V VP
Sbjct: 195 VADVFLIYAKVDGK-----ITAFVVERGTKGFTQGPKIDKCGMRASHMCQLFFEDVVVPA 249
Query: 120 ENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQAC 179
EN++ G+G L R+ +AA G+A+ ++ Y ER G I +F
Sbjct: 250 ENLLGEEGKGMVGMMRNLELERVTLAAMAVGIAERSVELMTSYASERKAFGKPISNF--- 306
Query: 180 NGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFAS-VAKLAKETIAP 238
G +Q I++ E A+ L Y+ + + G + AK FA+ +AK ++
Sbjct: 307 --GQIQRYIAEGYADTEAAKALVYSVSHNVHPGNKNRLGSDAAKLFATPIAKKVADSAIQ 364
Query: 239 ------YVQKMESEEKIDETVLKTLFESGLGTTEQKEK 270
Y + M E + L E G GT E K
Sbjct: 365 VMGGMGYSRDMPVERLWRDA---KLLEIGGGTIEAHHK 399
>gnl|CDD|201229 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal
domain. C-terminal domain of Acyl-CoA dehydrogenase is
an all-alpha, four helical up-and-down bundle.
Length = 150
Score = 154 bits (392), Expect = 2e-44
Identities = 63/179 (35%), Positives = 92/179 (51%), Gaps = 32/179 (17%)
Query: 389 GEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQA 448
G G+ +A LN R+ IAA GLA+ LD I Y +R FG + DFQ ++H+++
Sbjct: 1 GRGFAVAMETLNHERLLIAAAALGLARRALDEAIEYARQRKAFGRPLIDFQLIRHKLADM 60
Query: 449 ATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMGGLGFTKDYP 508
A ++E ARLL Y AA L+AG P +A+MAK +ASE+A + + +GG G++++YP
Sbjct: 61 AAELEAARLLVYRAAEALDAGGPDPAEAAMAKLYASELAQEVADLAMQLLGGYGYSREYP 120
Query: 509 QEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNIQLSTIAK 567
E+ YRD +V I EGTS IQ + IA+
Sbjct: 121 LERL--------------------------------YRDARVLRIGEGTSEIQRNIIAR 147
Score = 95.8 bits (239), Expect = 3e-23
Identities = 40/101 (39%), Positives = 57/101 (56%), Gaps = 5/101 (4%)
Query: 127 GEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACNGGSVQH 186
G G+ +A LN R+ IAA GLA+ LD I Y +R G + DFQ ++H
Sbjct: 1 GRGFAVAMETLNHERLLIAAAALGLARRALDEAIEYARQRKAFGRPLIDFQL-----IRH 55
Query: 187 QISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFAS 227
+++ ++E ARLL Y AA L+AG P +A+MAK +AS
Sbjct: 56 KLADMAAELEAARLLVYRAAEALDAGGPDPAEAAMAKLYAS 96
>gnl|CDD|173842 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to
fadE5. Putative acyl-CoA dehydrogenase (ACAD).
Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze
the alpha,beta dehydrogenation of the corresponding
trans-enoyl-CoA by FAD, which becomes reduced. The
reduced form of ACAD is reoxidized in the oxidative
half-reaction by electron-transferring flavoprotein
(ETF), from which the electrons are transferred to the
mitochondrial respiratory chain coupled with ATP
synthesis. The ACD family includes the eukaryotic
beta-oxidation, as well as amino acid catabolism
enzymes. These enzymes share high sequence similarity,
but differ in their substrate specificities. The
mitochondrial ACD's are generally homotetramers and have
an active site glutamate at a conserved position.
Length = 407
Score = 154 bits (392), Expect = 1e-41
Identities = 96/322 (29%), Positives = 146/322 (45%), Gaps = 47/322 (14%)
Query: 263 GTTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGN-HYILNGSKMWISNA 320
GT Q+EK++PRLA+ + G+ L+EP +GSD A++T A + + +NG K +IS
Sbjct: 100 GTEAQREKWIPRLAEGEWTGTMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFISAG 159
Query: 321 DIA---NIF-LVMANV-DVSKGYRGITCFIV-------ERSMEGFSVGKKENKLGMKASG 368
+ NI LV+A G +G++ F+V ER+ G +V + E K+G+ S
Sbjct: 160 EHDMSENIVHLVLARSEGAPPGVKGLSLFLVPKFLDDGERN--GVTVARIEEKMGLHGSP 217
Query: 369 TCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLER 428
TC L FDN + +I G G +N R+G+ Q TGLA+ + Y ER
Sbjct: 218 TCELVFDNAKGE---LIGEEGMGLAQMFAMMNGARLGVGTQGTGLAEAAYLNALAYAKER 274
Query: 429 SQFGHRIFDFQSV---QHQI------SQAATQVECARLLTYNAARLLEAGQPFIKQASMA 479
Q G I +V H +Q A E +R L A + + + +
Sbjct: 275 KQGGDLIKAAPAVTIIHHPDVRRSLMTQKAY-AEGSRALDLYTATVQDLAERKATEGEDR 333
Query: 480 KYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDY 539
K ++ D + K + E I GG G+T++Y
Sbjct: 334 KALSALA---------DLL--TPVVKGFGSEAALEA-------VSDAIQVHGGSGYTREY 375
Query: 540 PQEKYYRDCKVGTIYEGTSNIQ 561
P E+YYRD ++ TIYEGT+ IQ
Sbjct: 376 PIEQYYRDARITTIYEGTTGIQ 397
Score = 108 bits (271), Expect = 2e-25
Identities = 76/262 (29%), Positives = 121/262 (46%), Gaps = 26/262 (9%)
Query: 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGN-HYILNGSKMWISNAD 59
T Q+EK++PRLA+ + G+ L+EP +GSD A++T A + + +NG K +IS +
Sbjct: 101 TEAQREKWIPRLAEGEWTGTMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFISAGE 160
Query: 60 IA---NIF-LVMANV-DVSKGYRGITCFIV-------ERSMEGFSVGKKENKLGMKASGT 107
NI LV+A G +G++ F+V ER+ G +V + E K+G+ S T
Sbjct: 161 HDMSENIVHLVLARSEGAPPGVKGLSLFLVPKFLDDGERN--GVTVARIEEKMGLHGSPT 218
Query: 108 CSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERS 167
C L FDN + +I G G +N R+G+ Q TGLA+ + Y ER
Sbjct: 219 CELVFDNAKGE---LIGEEGMGLAQMFAMMNGARLGVGTQGTGLAEAAYLNALAYAKERK 275
Query: 168 QVGHRIFDFQA---CNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKY 224
Q G I A + V+ + E +R L A + + + + K
Sbjct: 276 QGGDLIKAAPAVTIIHHPDVRRSLMTQKAYAEGSRALDLYTATVQDLAERKATEGEDRKA 335
Query: 225 FASVAKLAKETIAPYVQKMESE 246
+++A L + P V+ SE
Sbjct: 336 LSALADL----LTPVVKGFGSE 353
>gnl|CDD|173841 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar
to fadE6, fadE17, and fadE26. Putative acyl-CoA
dehydrogenases (ACAD). Mitochondrial acyl-CoA
dehydrogenases (ACAD) catalyze the alpha, beta
dehydrogenation of the corresponding trans-enoyl-CoA by
FAD, which becomes reduced. The reduced form of ACAD is
reoxidized in the oxidative half-reaction by
electron-transferring flavoprotein (ETF), from which the
electrons are transferred to the mitochondrial
respiratory chain coupled with ATP synthesis. The ACD
family includes the eukaryotic beta-oxidation, as well
as amino acid catabolism enzymes. These enzymes share
high sequence similarity, but differ in their substrate
specificities. The mitochondrial ACD's are generally
homotetramers and have an active site glutamate at a
conserved position.
Length = 380
Score = 150 bits (380), Expect = 3e-40
Identities = 86/314 (27%), Positives = 139/314 (44%), Gaps = 42/314 (13%)
Query: 263 GTTEQKEKYLPRLAQTDAGSFAL--SEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNA 320
GT EQK ++LP + + + SEPG+GSD ++T A +DG+ +++NG K+W S A
Sbjct: 100 GTDEQKRRFLPPILSGEE-IWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGA 158
Query: 321 DIAN--IFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVR 378
A+ LV + + K +RGI+ +V+ G +V + + + D+VR
Sbjct: 159 HYADWAWLLVRTDPEAPK-HRGISILLVDMDSPGVTV--RPIRSINGGEFFNEVFLDDVR 215
Query: 379 VPEENIISGVGEGYKIAAGFLNQGR---IGIAAQMTGLAQGCLDATIPYTLERSQFGHRI 435
VP+ N + V +G+K+A LN R G AA L L G +
Sbjct: 216 VPDANRVGEVNDGWKVAMTTLNFERVSIGGSAATFFELLLARLLLLTRD-------GRPL 268
Query: 436 FDFQSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCI 495
D V+ ++++ + E RLL + A L AG+P +AS+AK F SE+A + +
Sbjct: 269 IDDPLVRQRLARLEAEAEALRLLVFRLASALAAGKPPGAEASIAKLFGSELAQELAELAL 328
Query: 496 DWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYE 555
+ +G +D G + Y + TIY
Sbjct: 329 ELLGTAALLRDPA----------PGAELAGRWEAD--------------YLRSRATTIYG 364
Query: 556 GTSNIQLSTIAKYI 569
GTS IQ + IA+ +
Sbjct: 365 GTSEIQRNIIAERL 378
Score = 122 bits (307), Expect = 3e-30
Identities = 67/230 (29%), Positives = 112/230 (48%), Gaps = 17/230 (7%)
Query: 2 TTEQKEKYLPRLAQTDAGSFAL--SEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 59
T EQK ++LP + + + SEPG+GSD ++T A +DG+ +++NG K+W S A
Sbjct: 101 TDEQKRRFLPPILSGEE-IWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAH 159
Query: 60 IAN--IFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRV 117
A+ LV + + K +RGI+ +V+ G +V + + + D+VRV
Sbjct: 160 YADWAWLLVRTDPEAPK-HRGISILLVDMDSPGVTV--RPIRSINGGEFFNEVFLDDVRV 216
Query: 118 PEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQ 177
P+ N + V +G+K+A LN R+ I + L + T + I D
Sbjct: 217 PDANRVGEVNDGWKVAMTTLNFERVSIGGSAATFFELLLARLLLLTRDGRP---LIDD-- 271
Query: 178 ACNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFAS 227
V+ ++++ + E RLL + A L AG+P +AS+AK F S
Sbjct: 272 ----PLVRQRLARLEAEAEALRLLVFRLASALAAGKPPGAEASIAKLFGS 317
>gnl|CDD|132251 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-CoA dehydrogenase.
Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the
anaerobic degradation of benzoyl-CoA derived from
varioius aromatic compounds, in Rhodopseudomonas
palustris but not Thauera aromatica. The aliphatic
compound cyclohexanecarboxylate, can be converted to the
same intermediate in two steps. The first step is its
ligation to coenzyme A. The second is the action of this
enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Length = 372
Score = 145 bits (368), Expect = 8e-39
Identities = 89/249 (35%), Positives = 136/249 (54%), Gaps = 9/249 (3%)
Query: 273 PRLAQTDAG----SFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLV 328
P L Q AG + AL+EP GSDA ++ A +DG+ Y+LNG K IS AD A+ +V
Sbjct: 104 PWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISAADQADAAVV 163
Query: 329 MANV-DVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISG 387
A ++G RGI+ F+V + G + + + G +A G S+ F+NVRVP ++++
Sbjct: 164 FARTGSEAEGARGISAFLVPMDLPGITRNRFDC-HGQRAIGRGSIFFENVRVPADHMLGN 222
Query: 388 VGEGY-KIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQIS 446
G+G+ ++ GF + R I Q+ +A+ LD T Y ER FG + FQ V H ++
Sbjct: 223 EGQGFVQVMQGF-DFSRALIGLQVLAVARAALDETWRYVAERQAFGKPLSAFQGVSHPLA 281
Query: 447 QAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMGGLGFTKD 506
A TQVE ARLL L + G P +A+M K++A ++A + QC+ G G+ +
Sbjct: 282 DAETQVEAARLLCLQTLWLKDHGLPHTSEAAMCKWWAPKLAYDVIHQCLLTHGHGGYDRG 341
Query: 507 YPQEKFYRD 515
E+ RD
Sbjct: 342 -DMEQRLRD 349
Score = 124 bits (312), Expect = 4e-31
Identities = 84/232 (36%), Positives = 125/232 (53%), Gaps = 15/232 (6%)
Query: 11 PRLAQTDAG----SFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLV 66
P L Q AG + AL+EP GSDA ++ A +DG+ Y+LNG K IS AD A+ +V
Sbjct: 104 PWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISAADQADAAVV 163
Query: 67 MANV-DVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISG 125
A ++G RGI+ F+V + G + + + G +A G S+ F+NVRVP ++++
Sbjct: 164 FARTGSEAEGARGISAFLVPMDLPGITRNRFDC-HGQRAIGRGSIFFENVRVPADHMLGN 222
Query: 126 VGEGY-KIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACNGGSV 184
G+G+ ++ GF + R I Q+ +A+ LD T Y ER G + FQ V
Sbjct: 223 EGQGFVQVMQGF-DFSRALIGLQVLAVARAALDETWRYVAERQAFGKPLSAFQG-----V 276
Query: 185 QHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFASVAKLAKETI 236
H ++ A TQVE ARLL L + G P +A+M K++A KLA + I
Sbjct: 277 SHPLADAETQVEAARLLCLQTLWLKDHGLPHTSEAAMCKWWAP--KLAYDVI 326
>gnl|CDD|183454 PRK12341, PRK12341, putative acyl-CoA dehydrogenase; Provisional.
Length = 381
Score = 145 bits (368), Expect = 1e-38
Identities = 77/259 (29%), Positives = 123/259 (47%), Gaps = 6/259 (2%)
Query: 263 GTTEQKEKYLPRLAQTDAGSFAL--SEPGSGSDAFAMKTTAT-KDGNHYILNGSKMWISN 319
G+ EQ K +T ++AL +EPG+GSD + TT T K+G Y LNG K +I+
Sbjct: 100 GSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVY-LNGQKTFITG 158
Query: 320 ADIANIFLVMA-NVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVR 378
A LV+A + + T + V+ S G + K+G TC ++ DNV
Sbjct: 159 AKEYPYMLVLARDPQPKDPKKAFTLWWVDSSKPGIKINPLH-KIGWHMLSTCEVYLDNVE 217
Query: 379 VPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDF 438
V E +++ G G+ R+ AA+ G A+ + Y +R QFG I
Sbjct: 218 VEESDLVGEEGMGFLNVMYNFEMERLINAARSLGFAECAFEDAARYANQRIQFGKPIGHN 277
Query: 439 QSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWM 498
Q +Q +++ A ++E R + Y A + GQ A++AK + + A + I M
Sbjct: 278 QLIQEKLTLMAIKIENMRNMVYKVAWQADNGQSLRTSAALAKLYCARTAMEVIDDAIQIM 337
Query: 499 GGLGFTKDYPQEKFYRDCK 517
GGLG+T + +F+RD +
Sbjct: 338 GGLGYTDEARVSRFWRDVR 356
Score = 112 bits (281), Expect = 7e-27
Identities = 69/246 (28%), Positives = 110/246 (44%), Gaps = 13/246 (5%)
Query: 2 TTEQKEKYLPRLAQTDAGSFAL--SEPGSGSDAFAMKTTAT-KDGNHYILNGSKMWISNA 58
+ EQ K +T ++AL +EPG+GSD + TT T K+G Y LNG K +I+ A
Sbjct: 101 SAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVY-LNGQKTFITGA 159
Query: 59 DIANIFLVMA-NVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRV 117
LV+A + + T + V+ S G + K+G TC ++ DNV V
Sbjct: 160 KEYPYMLVLARDPQPKDPKKAFTLWWVDSSKPGIKINPLH-KIGWHMLSTCEVYLDNVEV 218
Query: 118 PEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQ 177
E +++ G G+ R+ AA+ G A+ + Y +R Q G I Q
Sbjct: 219 EESDLVGEEGMGFLNVMYNFEMERLINAARSLGFAECAFEDAARYANQRIQFGKPIGHNQ 278
Query: 178 ACNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFASVAKLAKETIA 237
+Q +++ ++E R + Y A + GQ A++AK + A+ A E I
Sbjct: 279 L-----IQEKLTLMAIKIENMRNMVYKVAWQADNGQSLRTSAALAKLY--CARTAMEVID 331
Query: 238 PYVQKM 243
+Q M
Sbjct: 332 DAIQIM 337
>gnl|CDD|173844 cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2.
FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA
dehydrogenases (ACAD) catalyze the alpha,beta
dehydrogenation of the corresponding trans-enoyl-CoA by
FAD, which becomes reduced. The reduced form of ACAD is
reoxidized in the oxidative half-reaction by
electron-transferring flavoprotein (ETF), from which the
electrons are transferred to the mitochondrial
respiratory chain coupled with ATP synthesis. The ACAD
family includes the eukaryotic beta-oxidation, as well
as amino acid catabolism enzymes. These enzymes share
high sequence similarity, but differ in their substrate
specificities. ACAD's are generally homotetramers and
have an active site glutamate at a conserved position.
Length = 394
Score = 140 bits (356), Expect = 9e-37
Identities = 80/262 (30%), Positives = 129/262 (49%), Gaps = 12/262 (4%)
Query: 263 GTTEQKEKYLPRLAQTDAGS-FALSEPG-SGSDAFAMKTTATKDGNHYILNGSKMWISNA 320
G+ EQK+++L L S FA++EP + SDA ++ + +DG+ Y++NG K W S A
Sbjct: 108 GSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRKWWSSGA 167
Query: 321 -----DIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKAS--GTCSLH 373
IA I + + D + +R + +V G ++ + + G + G +
Sbjct: 168 GDPRCKIA-IVMGRTDPDGAPRHRQQSMILVPMDTPGVTIIRPLSVFGYDDAPHGHAEIT 226
Query: 374 FDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGH 433
FDNVRVP N+I G G G++IA G L GRI ++ G A+ L+ + R FG
Sbjct: 227 FDNVRVPASNLILGEGRGFEIAQGRLGPGRIHHCMRLIGAAERALELMCQRAVSREAFGK 286
Query: 434 RIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQPFI--KQASMAKYFASEMAGHIT 491
++ V H I+++ ++E ARLL AA +++ K+ +M K A MA I
Sbjct: 287 KLAQHGVVAHWIAKSRIEIEQARLLVLKAAHMIDTVGNKAARKEIAMIKVAAPRMALKII 346
Query: 492 RQCIDWMGGLGFTKDYPQEKFY 513
+ I G G ++D P Y
Sbjct: 347 DRAIQVHGAAGVSQDTPLANMY 368
Score = 115 bits (289), Expect = 7e-28
Identities = 70/236 (29%), Positives = 116/236 (49%), Gaps = 17/236 (7%)
Query: 2 TTEQKEKYLPRLAQTDAGS-FALSEPG-SGSDAFAMKTTATKDGNHYILNGSKMWISNA- 58
+ EQK+++L L S FA++EP + SDA ++ + +DG+ Y++NG K W S A
Sbjct: 109 SEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRKWWSSGAG 168
Query: 59 ----DIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKAS--GTCSLHF 112
IA I + + D + +R + +V G ++ + + G + G + F
Sbjct: 169 DPRCKIA-IVMGRTDPDGAPRHRQQSMILVPMDTPGVTIIRPLSVFGYDDAPHGHAEITF 227
Query: 113 DNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHR 172
DNVRVP N+I G G G++IA G L GRI ++ G A+ L+ + R G +
Sbjct: 228 DNVRVPASNLILGEGRGFEIAQGRLGPGRIHHCMRLIGAAERALELMCQRAVSREAFGKK 287
Query: 173 IFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFI--KQASMAKYFA 226
+ G V H I+++ ++E ARLL AA +++ K+ +M K A
Sbjct: 288 LAQH-----GVVAHWIAKSRIEIEQARLLVLKAAHMIDTVGNKAARKEIAMIKVAA 338
>gnl|CDD|178141 PLN02526, PLN02526, acyl-coenzyme A oxidase.
Length = 412
Score = 139 bits (352), Expect = 3e-36
Identities = 79/248 (31%), Positives = 127/248 (51%), Gaps = 7/248 (2%)
Query: 262 LGTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNA 320
G+ QK+KYLP LAQ D +AL+EP GSDA ++ TTATK +ILNG K WI N+
Sbjct: 124 CGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTTATKVEGGWILNGQKRWIGNS 183
Query: 321 DIANIFLVMA-NVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRV 379
A++ ++ A N ++ I FIV++ G K ENK+G++ + +V V
Sbjct: 184 TFADVLVIFARNTTTNQ----INGFIVKKGAPGLKATKIENKIGLRMVQNGDIVLKDVFV 239
Query: 380 PEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQ 439
P+E+ + GV ++ L R+ +A Q G++ G D Y ER QFG + FQ
Sbjct: 240 PDEDRLPGV-NSFQDTNKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQ 298
Query: 440 SVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMG 499
Q ++ + ++ L+ + +L E+G+ AS+ K + ++ A + +G
Sbjct: 299 INQEKLVRMLGNIQAMFLVGWRLCKLYESGKMTPGHASLGKAWITKKARETVALGRELLG 358
Query: 500 GLGFTKDY 507
G G D+
Sbjct: 359 GNGILADF 366
Score = 130 bits (328), Expect = 6e-33
Identities = 78/236 (33%), Positives = 123/236 (52%), Gaps = 14/236 (5%)
Query: 4 EQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIAN 62
QK+KYLP LAQ D +AL+EP GSDA ++ TTATK +ILNG K WI N+ A+
Sbjct: 128 AQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTTATKVEGGWILNGQKRWIGNSTFAD 187
Query: 63 IFLVMA-NVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEEN 121
+ ++ A N ++ I FIV++ G K ENK+G++ + +V VP+E+
Sbjct: 188 VLVIFARNTTTNQ----INGFIVKKGAPGLKATKIENKIGLRMVQNGDIVLKDVFVPDED 243
Query: 122 IISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACNG 181
+ GV ++ L R+ +A Q G++ G D Y ER Q G + FQ
Sbjct: 244 RLPGV-NSFQDTNKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQIN-- 300
Query: 182 GSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFASVAKLAKETIA 237
Q ++ + + ++ L+ + +L E+G+ AS+ K A + K A+ET+A
Sbjct: 301 ---QEKLVRMLGNIQAMFLVGWRLCKLYESGKMTPGHASLGK--AWITKKARETVA 351
>gnl|CDD|173843 cd01154, AidB, Proteins involved in DNA damage response, similar to
the AidB gene product. AidB is one of several genes
involved in the SOS adaptive response to DNA alkylation
damage, whose expression is activated by the Ada
protein. Its function has not been entirely elucidated;
however, it is similar in sequence and function to
acyl-CoA dehydrogenases. It has been proposed that aidB
directly destroys DNA alkylating agents such as
nitrosoguanidines (nitrosated amides) or their reaction
intermediates.
Length = 418
Score = 126 bits (319), Expect = 1e-31
Identities = 84/309 (27%), Positives = 139/309 (44%), Gaps = 48/309 (15%)
Query: 269 EKYLPRLAQTD------AGSFALSEPGSGSDAFAMKTTATKD-GNHYILNGSKMWISNAD 321
++YLP L G++ ++E GSD A +TTA + G Y LNG K + S
Sbjct: 132 KQYLPGLLSDRYKTGLLGGTW-MTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAPL 190
Query: 322 IANIFLVMAN-VDVSKGYRGITCFIVERSME-----GFSVGKKENKLGMKASGTCSLHFD 375
A+ LV+A G RG++ F+V R +E G+ + + ++KLG ++ T + FD
Sbjct: 191 -ADAALVLARPEGAPAGARGLSLFLVPRLLEDGTRNGYRIRRLKDKLGTRSVATGEVEFD 249
Query: 376 NVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRI 435
+ E +I G+G LN R+ A G+ + L Y R FG +
Sbjct: 250 DA---EAYLIGDEGKGIYYILEMLNISRLDNAVAALGIMRRALSEAYHYARHRRAFGKPL 306
Query: 436 FDFQSVQHQISQAATQVECARLLTYNAARLL---EAGQPFIKQASMAKYFASEMAGHITR 492
D ++ +++ VE A LT+ AAR A +P +A MA+ +A + +
Sbjct: 307 IDHPLMRRDLAEMEVDVEAATALTFRAARAFDRAAADKP--VEAHMAR-----LATPVAK 359
Query: 493 QCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGT 552
CK A +T + ++ GG G+ +++P + +R+ +V
Sbjct: 360 --------------------LIACKRAAPVTSEAMEVFGGNGYLEEWPVARLHREAQVTP 399
Query: 553 IYEGTSNIQ 561
I+EGT NIQ
Sbjct: 400 IWEGTGNIQ 408
Score = 87.4 bits (217), Expect = 2e-18
Identities = 72/256 (28%), Positives = 111/256 (43%), Gaps = 28/256 (10%)
Query: 7 EKYLPRLAQTD------AGSFALSEPGSGSDAFAMKTTATKD-GNHYILNGSKMWISNAD 59
++YLP L G++ ++E GSD A +TTA + G Y LNG K + S
Sbjct: 132 KQYLPGLLSDRYKTGLLGGTW-MTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAPL 190
Query: 60 IANIFLVMAN-VDVSKGYRGITCFIVERSME-----GFSVGKKENKLGMKASGTCSLHFD 113
A+ LV+A G RG++ F+V R +E G+ + + ++KLG ++ T + FD
Sbjct: 191 -ADAALVLARPEGAPAGARGLSLFLVPRLLEDGTRNGYRIRRLKDKLGTRSVATGEVEFD 249
Query: 114 NVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRI 173
+ E +I G+G LN R+ A G+ + L Y R G +
Sbjct: 250 DA---EAYLIGDEGKGIYYILEMLNISRLDNAVAALGIMRRALSEAYHYARHRRAFGKPL 306
Query: 174 FDFQACNGGSVQHQISQAVTQVECARLLTYNAARLL---EAGQPFIKQASMAKYFASVAK 230
D ++ +++ VE A LT+ AAR A +P +A MA+ VAK
Sbjct: 307 IDHPL-----MRRDLAEMEVDVEAATALTFRAARAFDRAAADKP--VEAHMARLATPVAK 359
Query: 231 LAKETIAPYVQKMESE 246
L A V E
Sbjct: 360 LIACKRAAPVTSEAME 375
>gnl|CDD|179566 PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated.
Length = 380
Score = 114 bits (288), Expect = 9e-28
Identities = 74/254 (29%), Positives = 121/254 (47%), Gaps = 2/254 (0%)
Query: 263 GTTEQKEKYLP-RLAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 321
GT EQ +K + R + A++EPG+GSD ++KTT T+ LNGSK +I+++
Sbjct: 101 GTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFITSSA 160
Query: 322 IANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPE 381
+VMA S T + V+ S G V K E KLG++ C + FD+V + E
Sbjct: 161 YTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVTKLE-KLGLRMDSCCEITFDDVELDE 219
Query: 382 ENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSV 441
+++ G G+ + R +A G A + Y +R QFG I FQ +
Sbjct: 220 KDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLI 279
Query: 442 QHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMGGL 501
Q + + A ++ + + Y AA + G A+M KYF + A + + +GG+
Sbjct: 280 QEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGV 339
Query: 502 GFTKDYPQEKFYRD 515
G ++ +F+RD
Sbjct: 340 GIAGNHRISRFWRD 353
Score = 86.0 bits (213), Expect = 5e-18
Identities = 65/229 (28%), Positives = 104/229 (45%), Gaps = 7/229 (3%)
Query: 2 TTEQKEKYLP-RLAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 60
T EQ +K + R + A++EPG+GSD ++KTT T+ LNGSK +I+++
Sbjct: 102 TQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFITSSAY 161
Query: 61 ANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEE 120
+VMA S T + V+ S G V K E KLG++ C + FD+V + E+
Sbjct: 162 TPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVTKLE-KLGLRMDSCCEITFDDVELDEK 220
Query: 121 NIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACN 180
++ G G+ + R +A G A + Y +R Q G I FQ
Sbjct: 221 DMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQL-- 278
Query: 181 GGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFASVA 229
+Q + + ++ + + Y AA + G A+M KYF + A
Sbjct: 279 ---IQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANA 324
>gnl|CDD|185635 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional.
Length = 622
Score = 103 bits (259), Expect = 3e-23
Identities = 91/334 (27%), Positives = 141/334 (42%), Gaps = 63/334 (18%)
Query: 263 GTTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGN-HYILNGSKMWISNA 320
G+ EQKE+YL +L + +G+ L+EP G+D +KT A + Y + G+K++IS
Sbjct: 164 GSEEQKEQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKITGTKIFISAG 223
Query: 321 D---IANI-FLVMANVDVSK-GYRGITCFIVER-------SME---GFSVGKKENKLGMK 365
D NI +V+A + S +G++ F+V R S+E E K+G+K
Sbjct: 224 DHDLTENIVHIVLARLPNSLPTTKGLSLFLVPRHVVKPDGSLETAKNVKCIGLEKKMGIK 283
Query: 366 ASGTCSLHFDNVR---VPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATI 422
S TC L F+N + E N G K F+N R+G A + A+ +
Sbjct: 284 GSSTCQLSFENSVGYLIGEPN------AGMKQMFTFMNTARVGTALEGVCHAELAFQNAL 337
Query: 423 PYTLERSQF------------GHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQ 470
Y ER RI +V+ I A E R L + RLL+
Sbjct: 338 RYARERRSMRALSGTKEPEKPADRIICHANVRQNILFAKAVAEGGRALLLDVGRLLDI-H 396
Query: 471 PFIKQASMAKYFASEMAGH--ITRQCI-DWMGGLGFTKDYPQEKFYRDCKMAGHITRQCI 527
K A+ + E+ + I + C+ +W G +C+
Sbjct: 397 AAAKDAATREALDHEIGFYTPIAKGCLTEW----GV-----------------EAASRCL 435
Query: 528 DWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNIQ 561
GG G+ K E+ RD ++GT+YEGT+ IQ
Sbjct: 436 QVWGGHGYIKGNGMEQILRDARIGTLYEGTTGIQ 469
Score = 82.6 bits (204), Expect = 2e-16
Identities = 67/235 (28%), Positives = 105/235 (44%), Gaps = 35/235 (14%)
Query: 4 EQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGN-HYILNGSKMWISNAD-- 59
EQKE+YL +L + +G+ L+EP G+D +KT A + Y + G+K++IS D
Sbjct: 167 EQKEQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKITGTKIFISAGDHD 226
Query: 60 -IANI-FLVMANVDVSK-GYRGITCFIVER-------SME---GFSVGKKENKLGMKASG 106
NI +V+A + S +G++ F+V R S+E E K+G+K S
Sbjct: 227 LTENIVHIVLARLPNSLPTTKGLSLFLVPRHVVKPDGSLETAKNVKCIGLEKKMGIKGSS 286
Query: 107 TCSLHFDNVR---VPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYT 163
TC L F+N + E N G K F+N R+G A + A+ + Y
Sbjct: 287 TCQLSFENSVGYLIGEPN------AGMKQMFTFMNTARVGTALEGVCHAELAFQNALRYA 340
Query: 164 LER--------SQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLE 210
ER ++ + D C+ +V+ I A E R L + RLL+
Sbjct: 341 RERRSMRALSGTKEPEKPADRIICH-ANVRQNILFAKAVAEGGRALLLDVGRLLD 394
>gnl|CDD|215473 PLN02876, PLN02876, acyl-CoA dehydrogenase.
Length = 822
Score = 95.6 bits (238), Expect = 1e-20
Identities = 70/255 (27%), Positives = 118/255 (46%), Gaps = 9/255 (3%)
Query: 263 GTTEQKEKYL-PRLAQTDAGSFALSEPG-SGSDAFAMKTTATKDGNHYILNGSKMWISNA 320
G EQ+ ++L P L FA++EP + SDA ++ + + G+ Y++NG+K W S A
Sbjct: 533 GNKEQQLEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIRRQGDSYVINGTKWWTSGA 592
Query: 321 --DIANIFLVMANVDVSKG-YRGITCFIVERSMEGFSVGKKENKLGMKAS--GTCSLHFD 375
+ +VM D + ++ + +V+ G + + G + G + F+
Sbjct: 593 MDPRCRVLIVMGKTDFNAPKHKQQSMILVDIQTPGVQIKRPLLVFGFDDAPHGHAEISFE 652
Query: 376 NVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRI 435
NVRVP +NI+ G G G++IA G L GR+ ++ G A+ + + L R FG I
Sbjct: 653 NVRVPAKNILLGEGRGFEIAQGRLGPGRLHHCMRLIGAAERGMQLMVQRALSRKAFGKLI 712
Query: 436 FDFQSVQHQISQAATQVECARLLTYNAARLLEA-GQPFIKQA-SMAKYFASEMAGHITRQ 493
S +++ ++E RLL AA L+ G + +MAK A MA +
Sbjct: 713 AQHGSFLSDLAKCRVELEQTRLLVLEAADQLDRLGNKKARGIIAMAKVAAPNMALKVLDM 772
Query: 494 CIDWMGGLGFTKDYP 508
+ G G + D
Sbjct: 773 AMQVHGAAGVSSDTV 787
Score = 80.2 bits (198), Expect = 1e-15
Identities = 59/216 (27%), Positives = 102/216 (47%), Gaps = 12/216 (5%)
Query: 2 TTEQKEKYL-PRLAQTDAGSFALSEPG-SGSDAFAMKTTATKDGNHYILNGSKMWISNA- 58
EQ+ ++L P L FA++EP + SDA ++ + + G+ Y++NG+K W S A
Sbjct: 534 NKEQQLEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIRRQGDSYVINGTKWWTSGAM 593
Query: 59 -DIANIFLVMANVDVSKG-YRGITCFIVERSMEGFSVGKKENKLGMKAS--GTCSLHFDN 114
+ +VM D + ++ + +V+ G + + G + G + F+N
Sbjct: 594 DPRCRVLIVMGKTDFNAPKHKQQSMILVDIQTPGVQIKRPLLVFGFDDAPHGHAEISFEN 653
Query: 115 VRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIF 174
VRVP +NI+ G G G++IA G L GR+ ++ G A+ + + L R G I
Sbjct: 654 VRVPAKNILLGEGRGFEIAQGRLGPGRLHHCMRLIGAAERGMQLMVQRALSRKAFGKLI- 712
Query: 175 DFQACNGGSVQHQISQAVTQVECARLLTYNAARLLE 210
GS +++ ++E RLL AA L+
Sbjct: 713 ----AQHGSFLSDLAKCRVELEQTRLLVLEAADQLD 744
>gnl|CDD|237277 PRK13026, PRK13026, acyl-CoA dehydrogenase; Reviewed.
Length = 774
Score = 95.4 bits (238), Expect = 2e-20
Identities = 80/255 (31%), Positives = 113/255 (44%), Gaps = 42/255 (16%)
Query: 263 GTTEQKEKYLPRLAQ-TDAGSFALSEPGSGSDAFAMKTTA-----TKDGNHYI---LNGS 313
GT EQK+ +LPRLA T+ FAL+ P +GSDA A+ T +G + L
Sbjct: 175 GTQEQKDYWLPRLADGTEIPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLTWD 234
Query: 314 KMWISNADIANIF-LVMANVDV-----SKGYRGITCFIVERSMEGFSVGKKENKLGMKAS 367
K +I+ A +A + L D K GITC ++ G +G++ N LGM
Sbjct: 235 KRYITLAPVATVLGLAFKLRDPDGLLGDKKELGITCALIPTDHPGVEIGRRHNPLGMA-- 292
Query: 368 GTCSLHFDN-------VRVPEENIISG---VGEGYKIAAGFLNQGR-IGIAAQMTGLAQG 416
F N V +P + II G G G+++ L+ GR I + A T
Sbjct: 293 ------FMNGTTRGKDVFIPLDWIIGGPDYAGRGWRMLVECLSAGRGISLPALGTASGHM 346
Query: 417 CLDATIPYTLERSQFGHRIFDFQSVQH---QISQAATQVECARLLTYNAARLLEAGQ-PF 472
T Y R QFG I F+ VQ +I+ +E AR LT L+ G P
Sbjct: 347 ATRTTGAYAYVRRQFGMPIGQFEGVQEALARIAGNTYLLEAARRLTTTG---LDLGVKPS 403
Query: 473 IKQASMAKYFASEMA 487
+ A +AKY +E+A
Sbjct: 404 VVTA-IAKYHMTELA 417
Score = 74.2 bits (183), Expect = 8e-14
Identities = 76/255 (29%), Positives = 107/255 (41%), Gaps = 47/255 (18%)
Query: 2 TTEQKEKYLPRLAQ-TDAGSFALSEPGSGSDAFAMKTTA-----TKDGNHYI---LNGSK 52
T EQK+ +LPRLA T+ FAL+ P +GSDA A+ T +G + L K
Sbjct: 176 TQEQKDYWLPRLADGTEIPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLTWDK 235
Query: 53 MWISNADIANIF-LVMANVDV-----SKGYRGITCFIVERSMEGFSVGKKENKLGMKASG 106
+I+ A +A + L D K GITC ++ G +G++ N LGM
Sbjct: 236 RYITLAPVATVLGLAFKLRDPDGLLGDKKELGITCALIPTDHPGVEIGRRHNPLGMA--- 292
Query: 107 TCSLHFDN-------VRVPEENIISG---VGEGYKIAAGFLNQGR-IGIAAQMTGLAQGC 155
F N V +P + II G G G+++ L+ GR I + A T
Sbjct: 293 -----FMNGTTRGKDVFIPLDWIIGGPDYAGRGWRMLVECLSAGRGISLPALGTASGHMA 347
Query: 156 LDATIPYTLERSQVGHRIFDFQACNGGSVQH---QISQAVTQVECARLLTYNAARLLEAG 212
T Y R Q G I F+ VQ +I+ +E AR LT L+ G
Sbjct: 348 TRTTGAYAYVRRQFGMPIGQFEG-----VQEALARIAGNTYLLEAARRLTTTG---LDLG 399
Query: 213 Q-PFIKQASMAKYFA 226
P + A +AKY
Sbjct: 400 VKPSVVTA-IAKYHM 413
>gnl|CDD|145755 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain.
Central domain of Acyl-CoA dehydrogenase has a
beta-barrel fold.
Length = 52
Score = 81.4 bits (202), Expect = 2e-19
Identities = 26/52 (50%), Positives = 41/52 (78%)
Query: 20 SFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVD 71
+FAL+EPG+GSD +++TTA +DG+ ++LNG K WI+NA +A++ LV+A
Sbjct: 1 AFALTEPGAGSDLASLETTAERDGDGWVLNGRKWWITNAALADLALVLARTG 52
Score = 81.4 bits (202), Expect = 2e-19
Identities = 26/52 (50%), Positives = 41/52 (78%)
Query: 282 SFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVD 333
+FAL+EPG+GSD +++TTA +DG+ ++LNG K WI+NA +A++ LV+A
Sbjct: 1 AFALTEPGAGSDLASLETTAERDGDGWVLNGRKWWITNAALADLALVLARTG 52
>gnl|CDD|132248 TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit.
Members of this protein family are the PimC proteins of
species such as Rhodopseudomonas palustris and
Bradyrhizobium japonicum. The pimFABCDE operon encodes
proteins for the metabolism of straight chain
dicarboxylates of seven to fourteen carbons. Especially
relevant is pimeloyl-CoA, basis of the gene symbol, as
it is a catabolite of benzoyl-CoA degradation, which
occurs in Rhodopseudomonas palustris.
Length = 395
Score = 85.8 bits (212), Expect = 5e-18
Identities = 51/148 (34%), Positives = 76/148 (51%), Gaps = 4/148 (2%)
Query: 262 LGTTEQKEKYLPRLAQTDAG-SFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNA 320
G EQK+++LPR+A D SEPGSGSD ++KT A K G+ +I+NG K W + A
Sbjct: 103 FGNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTWTTLA 162
Query: 321 DIANIFLVMANVD-VSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRV 379
A+ + D +K GI+ +V+ +G +V + G + FD+V V
Sbjct: 163 QHADWIFCLCRTDPTAKKQMGISFILVDMKSKGITVRPIQTIDG--GVEVNEVFFDDVEV 220
Query: 380 PEENIISGVGEGYKIAAGFLNQGRIGIA 407
P EN++ +G+ A L R GIA
Sbjct: 221 PYENLVGEENKGWDYAKFLLGNERTGIA 248
Score = 83.9 bits (207), Expect = 3e-17
Identities = 50/144 (34%), Positives = 75/144 (52%), Gaps = 4/144 (2%)
Query: 4 EQKEKYLPRLAQTDAG-SFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIAN 62
EQK+++LPR+A D SEPGSGSD ++KT A K G+ +I+NG K W + A A+
Sbjct: 107 EQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTWTTLAQHAD 166
Query: 63 IFLVMANVD-VSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEEN 121
+ D +K GI+ +V+ +G +V + G + FD+V VP EN
Sbjct: 167 WIFCLCRTDPTAKKQMGISFILVDMKSKGITVRPIQTIDG--GVEVNEVFFDDVEVPYEN 224
Query: 122 IISGVGEGYKIAAGFLNQGRIGIA 145
++ +G+ A L R GIA
Sbjct: 225 LVGEENKGWDYAKFLLGNERTGIA 248
>gnl|CDD|132247 TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, small subunit.
Members of this protein family are the PimD proteins of
species such as Rhodopseudomonas palustris,
Bradyrhizobium japonicum. The pimFABCDE operon encodes
proteins for the metabolism of straight chain
dicarboxylates of seven to fourteen carbons. Especially
relevant is pimeloyl-CoA, basis of the gene symbol, as
it is a catabolite of benzoyl-CoA degradation, which
occurs in Rhodopseudomonas palustris.
Length = 378
Score = 81.2 bits (200), Expect = 1e-16
Identities = 67/266 (25%), Positives = 113/266 (42%), Gaps = 13/266 (4%)
Query: 263 GTTEQKEKYLPRLAQ-TDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 321
G+ QK +LP + + +FA E S D + TTA K G+ ++++G K + N +
Sbjct: 101 GSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNGE 160
Query: 322 IANIFLVMANVDVSKGYR----GITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNV 377
A+ +V A +KG R GI F+V +G ++ + G+ A+ + F V
Sbjct: 161 TADTLIVTAR---TKGARRDRTGIGVFLVPAGAKGVTIKGYPTQDGLHAA---DITFTGV 214
Query: 378 RVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFD 437
V + I + ++ R + A+ GL L T+ Y R QFG I
Sbjct: 215 VVGADAAIGDPENALPLIERVVDDARAALCAEAVGLMDESLKTTVEYIKTRKQFGVPIGS 274
Query: 438 FQSVQHQISQAATQVECARLLTYNA--ARLLEAGQPFIKQASMAKYFASEMAGHITRQCI 495
FQ +QH+ + VE AR + A A + + + AK + + +Q I
Sbjct: 275 FQVLQHRAADMFVAVEQARSMAMFATMASDFDDAKERANAIAAAKVQIGKSLKFVGQQSI 334
Query: 496 DWMGGLGFTKDYPQEKFYRDCKMAGH 521
GG+G T + +++ M H
Sbjct: 335 QLHGGIGMTMEAKIGHYFKRLTMIEH 360
Score = 64.6 bits (157), Expect = 4e-11
Identities = 53/203 (26%), Positives = 87/203 (42%), Gaps = 16/203 (7%)
Query: 2 TTEQKEKYLPRLAQ-TDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 60
+ QK +LP + + +FA E S D + TTA K G+ ++++G K + N +
Sbjct: 102 SAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNGET 161
Query: 61 ANIFLVMANVDVSKGYR----GITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVR 116
A+ +V A +KG R GI F+V +G ++ + G+ A+ + F V
Sbjct: 162 ADTLIVTAR---TKGARRDRTGIGVFLVPAGAKGVTIKGYPTQDGLHAA---DITFTGVV 215
Query: 117 VPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDF 176
V + I + ++ R + A+ GL L T+ Y R Q G I F
Sbjct: 216 VGADAAIGDPENALPLIERVVDDARAALCAEAVGLMDESLKTTVEYIKTRKQFGVPIGSF 275
Query: 177 QACNGGSVQHQISQAVTQVECAR 199
Q +QH+ + VE AR
Sbjct: 276 Q-----VLQHRAADMFVAVEQAR 293
>gnl|CDD|219705 pfam08028, Acyl-CoA_dh_2, Acyl-CoA dehydrogenase, C-terminal
domain.
Length = 134
Score = 75.8 bits (187), Expect = 2e-16
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 11/130 (8%)
Query: 404 IGIAAQMTGLAQGCLDATIPYTLERSQ--FGHRIFDFQSVQHQISQAATQVECARLLTYN 461
+G AA G A+G L A I ER + G + + + Q ++++AA +++ ARLL
Sbjct: 1 LGFAAPALGAARGALAAFIERARERVRAYGGAPLAEDPATQTRLAEAAAEIDAARLLLER 60
Query: 462 AARLLEA----GQPF----IKQASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFY 513
AA + A G +A A+E+A + GG KD P ++F+
Sbjct: 61 AADRIWAHADRGDEVTPEERARARRDAALAAELAVAAVDRLFRAAGGSALFKDSPLQRFW 120
Query: 514 RDCKMAG-HI 522
RD H
Sbjct: 121 RDAHAGAAHA 130
Score = 46.9 bits (112), Expect = 2e-06
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 142 IGIAAQMTGLAQGCLDATIPYTLERSQVGH--RIFDFQACNGGSVQHQISQAVTQVECAR 199
+G AA G A+G L A I ER + + + A Q ++++A +++ AR
Sbjct: 1 LGFAAPALGAARGALAAFIERARERVRAYGGAPLAEDPA-----TQTRLAEAAAEIDAAR 55
Query: 200 LLTYNAARLLEA 211
LL AA + A
Sbjct: 56 LLLERAADRIWA 67
>gnl|CDD|236528 PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed.
Length = 777
Score = 80.6 bits (200), Expect = 8e-16
Identities = 82/278 (29%), Positives = 123/278 (44%), Gaps = 58/278 (20%)
Query: 263 GTTEQKEKYLPRLAQ-TDAGSFALSEPGSGSDAFAMKTTAT-----KDGNHYI---LNGS 313
GT EQK+ YLPRLA+ + FAL+ P +GSDA ++ T G + L +
Sbjct: 176 GTDEQKDHYLPRLARGEEIPCFALTSPEAGSDAGSIPDTGVVCKGEWQGEEVLGMRLTWN 235
Query: 314 KMWISNADIANIF-----------LVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKL 362
K +I+ A IA + L+ D+ GITC ++ G +G++ L
Sbjct: 236 KRYITLAPIATVLGLAFKLYDPDGLLGDKEDL-----GITCALIPTDTPGVEIGRRHFPL 290
Query: 363 GMKASGTCSLHFDN-------VRVPEENIISG---VGEGYKIAAGFLNQGR-IGIAAQMT 411
+ F N V +P + II G G+G+++ L+ GR I + + T
Sbjct: 291 N--------VPFQNGPTRGKDVFIPLDYIIGGPKMAGQGWRMLMECLSVGRGISLPSNST 342
Query: 412 GLAQGCLDATIPYTLERSQFGHRIFDFQSVQH---QISQAATQVECARLLTYNAARLLEA 468
G A+ AT Y R QF I F+ ++ +I+ A ++ AR LT A L E
Sbjct: 343 GGAKLAALATGAYARIRRQFKLPIGKFEGIEEPLARIAGNAYLMDAARTLTTAAVDLGE- 401
Query: 469 GQPFIKQASMAKYFASEMAGHITRQCI----DWMGGLG 502
+P + A +AKY +E RQ I D GG G
Sbjct: 402 -KPSVLSA-IAKYHLTERG----RQVINDAMDIHGGKG 433
Score = 58.3 bits (142), Expect = 8e-09
Identities = 56/200 (28%), Positives = 86/200 (43%), Gaps = 44/200 (22%)
Query: 2 TTEQKEKYLPRLAQ-TDAGSFALSEPGSGSDAFAMKTTAT-----KDGNHYI---LNGSK 52
T EQK+ YLPRLA+ + FAL+ P +GSDA ++ T G + L +K
Sbjct: 177 TDEQKDHYLPRLARGEEIPCFALTSPEAGSDAGSIPDTGVVCKGEWQGEEVLGMRLTWNK 236
Query: 53 MWISNADIANIF-----------LVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLG 101
+I+ A IA + L+ D+ GITC ++ G +G++ L
Sbjct: 237 RYITLAPIATVLGLAFKLYDPDGLLGDKEDL-----GITCALIPTDTPGVEIGRRHFPLN 291
Query: 102 MKASGTCSLHFDN-------VRVPEENIISG---VGEGYKIAAGFLNQGR-IGIAAQMTG 150
+ F N V +P + II G G+G+++ L+ GR I + + TG
Sbjct: 292 --------VPFQNGPTRGKDVFIPLDYIIGGPKMAGQGWRMLMECLSVGRGISLPSNSTG 343
Query: 151 LAQGCLDATIPYTLERSQVG 170
A+ AT Y R Q
Sbjct: 344 GAKLAALATGAYARIRRQFK 363
>gnl|CDD|215342 PLN02636, PLN02636, acyl-coenzyme A oxidase.
Length = 686
Score = 77.6 bits (191), Expect = 7e-15
Identities = 69/229 (30%), Positives = 107/229 (46%), Gaps = 46/229 (20%)
Query: 262 LGTTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKD--GNHYILN-----GS 313
LGT + ++KY + D G FA++E GS+ ++TTAT D + +++N
Sbjct: 155 LGTKKHRDKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDPLTDEFVINTPNDGAI 214
Query: 314 KMWISNA----DIANIF--LVMANVDVSKGYR--GITCFIVE-RSME------GFSVGKK 358
K WI NA A +F L + D SKG G+ FIV R M+ G +
Sbjct: 215 KWWIGNAAVHGKFATVFARLKLPTHD-SKGVSDMGVHAFIVPIRDMKTHQVLPGVEIRDC 273
Query: 359 ENKLGMKASGTCSLHFDNVRVPEENIISGVGE-----GY---------KIAA--GFLNQG 402
+K+G+ +L F +VR+P +N+++ G+ Y + AA G L G
Sbjct: 274 GHKVGLNGVDNGALRFRSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGG 333
Query: 403 RIGIAAQMTGLAQGCLDATIPYTLERSQFGH------RIFDFQSVQHQI 445
R+G+A G+ + I Y+L R QFG I D+QS QH++
Sbjct: 334 RVGLAYGSVGVLKASNTIAIRYSLLRQQFGPPKQPEISILDYQSQQHKL 382
Score = 63.7 bits (155), Expect = 2e-10
Identities = 66/232 (28%), Positives = 104/232 (44%), Gaps = 51/232 (21%)
Query: 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKD--GNHYILN-----GSKM 53
T + ++KY + D G FA++E GS+ ++TTAT D + +++N K
Sbjct: 157 TKKHRDKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDPLTDEFVINTPNDGAIKW 216
Query: 54 WISNA----DIANIF--LVMANVDVSKGYR--GITCFIVE-RSME------GFSVGKKEN 98
WI NA A +F L + D SKG G+ FIV R M+ G + +
Sbjct: 217 WIGNAAVHGKFATVFARLKLPTHD-SKGVSDMGVHAFIVPIRDMKTHQVLPGVEIRDCGH 275
Query: 99 KLGMKASGTCSLHFDNVRVPEENIISGVGE-----GY---------KIAA--GFLNQGRI 142
K+G+ +L F +VR+P +N+++ G+ Y + AA G L GR+
Sbjct: 276 KVGLNGVDNGALRFRSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRV 335
Query: 143 GIAAQMTGLAQGCLDATIPYTLERSQVGH------RIFDFQACNGGSVQHQI 188
G+A G+ + I Y+L R Q G I D+Q S QH++
Sbjct: 336 GLAYGSVGVLKASNTIAIRYSLLRQQFGPPKQPEISILDYQ-----SQQHKL 382
>gnl|CDD|173839 cd01150, AXO, Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA
oxidases (AXO) catalyze the first set in the peroxisomal
fatty acid beta-oxidation, the alpha,beta
dehydrogenation of the corresponding trans-enoyl-CoA by
FAD, which becomes reduced. In a second oxidative
half-reaction, the reduced FAD is reoxidized by
molecular oxygen. AXO is generally a homodimer, but it
has been reported to form a different type of oligomer
in yeast. There are several subtypes of AXO's, based on
substrate specificity. Palmitoyl-CoA oxidase acts on
straight-chain fatty acids and prostanoids; whereas, the
closely related Trihydroxycoprostanoly-CoA oxidase has
the greatest activity for 2-methyl branched side chains
of bile precursors. Pristanoyl-CoA oxidase, acts on
2-methyl branched fatty acids. AXO has an additional
domain, C-terminal to the region with similarity to
acyl-CoA dehydrogenases, which is included in this
alignment.
Length = 610
Score = 72.7 bits (179), Expect = 2e-13
Identities = 58/226 (25%), Positives = 92/226 (40%), Gaps = 43/226 (19%)
Query: 261 GLGTTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGN--HYILN-----G 312
LGT E ++ +L + G FA +E G GS+ ++TTAT D +++N
Sbjct: 115 NLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYDPLTQEFVINTPDFTA 174
Query: 313 SKMWISN-ADIANIFLVMANVDVSKGYRGITCFIVE-------RSMEGFSVGKKENKLGM 364
+K W N A +V A + G+ FIV + + G +VG K+G+
Sbjct: 175 TKWWPGNLGKTATHAVVFAQLITPGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMGL 234
Query: 365 KASGTCSLHFDNVRVPEENIIS----------------GVGEGYKIAAGFLNQGRIGIAA 408
L F NVR+P EN+++ + Y G + GR+G+
Sbjct: 235 NGVDNGFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVGLI- 293
Query: 409 QMTGLAQGCLDATIP--YTLERSQFGHR-------IFDFQSVQHQI 445
ATI Y+ R QFG + I D+Q Q+++
Sbjct: 294 -YDAAMSLKKAATIAIRYSAVRRQFGPKPSDPEVQILDYQLQQYRL 338
Score = 60.0 bits (146), Expect = 2e-09
Identities = 54/218 (24%), Positives = 85/218 (38%), Gaps = 43/218 (19%)
Query: 2 TTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGN--HYILN-----GSKM 53
T E ++ +L + G FA +E G GS+ ++TTAT D +++N +K
Sbjct: 118 TDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYDPLTQEFVINTPDFTATKW 177
Query: 54 WISN-ADIANIFLVMANVDVSKGYRGITCFIVE-------RSMEGFSVGKKENKLGMKAS 105
W N A +V A + G+ FIV + + G +VG K+G+
Sbjct: 178 WPGNLGKTATHAVVFAQLITPGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMGLNGV 237
Query: 106 GTCSLHFDNVRVPEENIIS----------------GVGEGYKIAAGFLNQGRIGIAAQMT 149
L F NVR+P EN+++ + Y G + GR+G+
Sbjct: 238 DNGFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVGLI--YD 295
Query: 150 GLAQGCLDATIP--YTLERSQVGHR-------IFDFQA 178
ATI Y+ R Q G + I D+Q
Sbjct: 296 AAMSLKKAATIAIRYSAVRRQFGPKPSDPEVQILDYQL 333
>gnl|CDD|188537 TIGR04022, sulfur_SfnB, sulfur acquisition oxidoreductase, SfnB
family. Members of this protein family belong to the
greater family of acyl-CoA dehydrogenases. This family
includes the sulfate starvation induced protein SfnB of
Pseudomonas putida strain DS1, which is both encoded
nearby to and phylogenetically closely correlated with
the dimethyl sulphone monooxygenase SfnG. This family
shows considerable sequence similarity to the
Rhodococcus dibenzothiophene desulfurization enzyme
DszC, although that enzyme falls outside of the scope of
this family [Central intermediary metabolism, Sulfur
metabolism].
Length = 391
Score = 62.7 bits (153), Expect = 2e-10
Identities = 52/217 (23%), Positives = 90/217 (41%), Gaps = 23/217 (10%)
Query: 263 GTTEQKEKYLPRLAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 322
G+ EQK + + + A SE G+ + +T +DG+ Y LNG K + + A
Sbjct: 98 GSEEQKRFFFGEVLAGERFGNAFSERGT-RNVLDFQTRLRRDGDGYRLNGRKFYSTGALF 156
Query: 323 ANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEE 382
A+ V+A D + V R G +V + G + + + ++ D+VRVP E
Sbjct: 157 AHWIPVLALDDDGRPVLAF----VPRDAPGLTVIDDWSGFGQRTTASGTVLLDDVRVPAE 212
Query: 383 NIISGVGEGYKIAAGFLNQGRIGIAAQMT------GLAQGCLDATIPYTLERSQ----FG 432
+++ I F G AQ+ G+A+ L T+ + ER++ G
Sbjct: 213 HVVP-------IQRAFDRPTAAGPVAQIIHAAIDAGIARAALADTLAFVRERARPWIDSG 265
Query: 433 -HRIFDFQSVQHQISQAATQVECARLLTYNAARLLEA 468
R D ++ A ++ A L A R ++A
Sbjct: 266 VERASDDPLTIAEVGDLAIRLHAAEALLERAGRAVDA 302
Score = 60.4 bits (147), Expect = 9e-10
Identities = 55/240 (22%), Positives = 96/240 (40%), Gaps = 32/240 (13%)
Query: 2 TTEQKEKYLPRLAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIA 61
+ EQK + + + A SE G+ + +T +DG+ Y LNG K + + A A
Sbjct: 99 SEEQKRFFFGEVLAGERFGNAFSERGT-RNVLDFQTRLRRDGDGYRLNGRKFYSTGALFA 157
Query: 62 NIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEEN 121
+ V+A D + V R G +V + G + + + ++ D+VRVP E+
Sbjct: 158 HWIPVLALDDDGRPVLAF----VPRDAPGLTVIDDWSGFGQRTTASGTVLLDDVRVPAEH 213
Query: 122 IISGVGEGYKIAAGFLNQGRIGIAAQMT------GLAQGCLDATIPYTLER------SQV 169
++ I F G AQ+ G+A+ L T+ + ER S V
Sbjct: 214 VVP-------IQRAFDRPTAAGPVAQIIHAAIDAGIARAALADTLAFVRERARPWIDSGV 266
Query: 170 GHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFASVA 229
A + ++ ++ A L A R ++A + + S+A AS+A
Sbjct: 267 ER------ASDDPLTIAEVGDLAIRLHAAEALLERAGRAVDAARAEPTEESVAA--ASIA 318
>gnl|CDD|185639 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provisional.
Length = 646
Score = 57.5 bits (139), Expect = 1e-08
Identities = 55/221 (24%), Positives = 96/221 (43%), Gaps = 41/221 (18%)
Query: 262 LGTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKD--GNHYILN-----GS 313
LGT EQ ++P L + G +A +E G GSD ++TTAT D N ++++
Sbjct: 109 LGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEAV 168
Query: 314 KMWISNAD-IANIFLVMANVDVSKGYRGITCFIVE-------RSMEGFSVGKKENKLGMK 365
K W + N LV A + V+ +G+ F+V + ++G VG K+G
Sbjct: 169 KFWPGELGFLCNFALVYAKLIVNGKNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMGYA 228
Query: 366 ASGTCSLHFDNVRVPEENIIS---GVGEGYKIAAGFLNQG--RIGIAAQM---------- 410
L FD+ R+P +++++ V E + QG ++ A+ M
Sbjct: 229 VKDNGFLSFDHYRIPLDSLLARYIKVSEDGQ----VERQGNPKVSYASMMYMRNLIIDQY 284
Query: 411 TGLAQGCLDATIPYTLERSQFGH------RIFDFQSVQHQI 445
A L I Y++ R QF + + ++Q+ Q ++
Sbjct: 285 PRFAAQALTVAIRYSIYRQQFTNDNKQENSVLEYQTQQQKL 325
Score = 46.4 bits (110), Expect = 4e-05
Identities = 50/198 (25%), Positives = 84/198 (42%), Gaps = 35/198 (17%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKD--GNHYILN-----GSKM 53
T EQ ++P L + G +A +E G GSD ++TTAT D N ++++ K
Sbjct: 111 TDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEAVKF 170
Query: 54 WISNAD-IANIFLVMANVDVSKGYRGITCFIVE-------RSMEGFSVGKKENKLGMKAS 105
W + N LV A + V+ +G+ F+V + ++G VG K+G
Sbjct: 171 WPGELGFLCNFALVYAKLIVNGKNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMGYAVK 230
Query: 106 GTCSLHFDNVRVPEENIIS---GVGEGYKIAAGFLNQG--RIGIAAQM----------TG 150
L FD+ R+P +++++ V E + QG ++ A+ M
Sbjct: 231 DNGFLSFDHYRIPLDSLLARYIKVSEDGQ----VERQGNPKVSYASMMYMRNLIIDQYPR 286
Query: 151 LAQGCLDATIPYTLERSQ 168
A L I Y++ R Q
Sbjct: 287 FAAQALTVAIRYSIYRQQ 304
>gnl|CDD|173852 cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C.
DszC is a flavin reductase dependent enzyme, which
catalyzes the first two steps of DBT desulfurization in
mesophilic bacteria. DszC converts DBT to DBT-sulfoxide,
which is then converted to DBT-sulfone. Bacteria with
this enzyme are candidates for the removal of organic
sulfur compounds from fossil fuels, which pollute the
environment. An equivalent enzyme tdsC, is found in
thermophilic bacteria. This alignment also contains a
closely related uncharacterized subgroup.
Length = 377
Score = 55.0 bits (133), Expect = 5e-08
Identities = 48/213 (22%), Positives = 87/213 (40%), Gaps = 13/213 (6%)
Query: 262 LGTTEQKEKYLPRLAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 321
G + ++++ R+ A+SE GS + T G Y+LNG K + + A
Sbjct: 86 AGPEQFRKRWFGRVLNGWIFGNAVSERGSVRPGTFLTATVRDGG-GYVLNGKKFYSTGAL 144
Query: 322 IANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPE 381
++ V A + K + V G +V + G + + + ++ FDNVRV
Sbjct: 145 FSDWVTVSALDEEGK----LVFAAVPTDRPGITVVDDWDGFGQRLTASGTVTFDNVRVEP 200
Query: 382 ENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQ-FGH-----RI 435
+ ++ ++ +AA + G+A+ LD + Y R++ + H
Sbjct: 201 DEVL-PRPNAPDRGTLLTAIYQLVLAAVLAGIARAALDDAVAYVRSRTRPWIHSGAESAR 259
Query: 436 FDFQSVQHQISQAATQVECARLLTYNAARLLEA 468
D VQ + A ++ A L AAR L+A
Sbjct: 260 DDPY-VQQVVGDLAARLHAAEALVLQAARALDA 291
Score = 52.3 bits (126), Expect = 4e-07
Identities = 45/196 (22%), Positives = 75/196 (38%), Gaps = 18/196 (9%)
Query: 22 ALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGYRGITC 81
A+SE GS + T G Y+LNG K + + A ++ V A + K +
Sbjct: 108 AVSERGSVRPGTFLTATVRDGG-GYVLNGKKFYSTGALFSDWVTVSALDEEGK----LVF 162
Query: 82 FIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGR 141
V G +V + G + + + ++ FDNVRV + ++ +
Sbjct: 163 AAVPTDRPGITVVDDWDGFGQRLTASGTVTFDNVRVEPDEVL-PRPNAPDRGTLLTAIYQ 221
Query: 142 IGIAAQMTGLAQGCLDATIPYTLER------SQVGHRIFDFQACNGGSVQHQISQAVTQV 195
+ +AA + G+A+ LD + Y R S D VQ + ++
Sbjct: 222 LVLAAVLAGIARAALDDAVAYVRSRTRPWIHSGAESARDDPY------VQQVVGDLAARL 275
Query: 196 ECARLLTYNAARLLEA 211
A L AAR L+A
Sbjct: 276 HAAEALVLQAARALDA 291
>gnl|CDD|173848 cd01159, NcnH, Naphthocyclinone hydroxylase. Naphthocyclinone is
an aromatic polyketide and an antibiotic, which is
active against Gram-positive bacteria. Polyketides are
secondary metabolites, which have important biological
functions such as antitumor, immunosupressive or
antibiotic activities. NcnH is a hydroxylase involved in
the biosynthesis of naphthocyclinone and possibly other
polyketides.
Length = 370
Score = 53.9 bits (130), Expect = 1e-07
Identities = 46/254 (18%), Positives = 98/254 (38%), Gaps = 27/254 (10%)
Query: 292 SDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGYRGITCFIVERSME 351
+ ++A A + Y ++G+ + S D A+ LV A V+ G F+V
Sbjct: 104 AGSYAPGGRAERVDGGYRVSGTWPFASGCDHADWILVGAIVEDDDGGPLPRAFVV--PRA 161
Query: 352 GFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVG-----------EGYKIAAGFLN 400
+ + + +G++ +G+ ++ D+V VPE ++ Y++ +
Sbjct: 162 EYEIVDTWHVVGLRGTGSNTVVVDDVFVPEHRTLTAGDMMAGDGPGGSTPVYRMPLRQVF 221
Query: 401 QGRIGIAAQMTGLAQGCLDATIPYTLERSQ---FGHRIFDFQSVQHQISQAATQVECARL 457
+ AA G A+G L + +R + ++ + Q ++++AA +++ AR
Sbjct: 222 P--LSFAAVSLGAAEGALAEFLELAGKRVRQYGAAVKMAEAPITQLRLAEAAAELDAARA 279
Query: 458 LTYNAARLLEAGQPFIK--------QASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQ 509
A R L A + +A++++ + GG P
Sbjct: 280 FLERATRDLWAHALAGGPIDVEERARIRRDAAYAAKLSAEAVDRLFHAAGGSALYTASPL 339
Query: 510 EKFYRDCKMAG-HI 522
++ +RD A H
Sbjct: 340 QRIWRDIHAAAQHA 353
Score = 45.8 bits (109), Expect = 3e-05
Identities = 38/195 (19%), Positives = 77/195 (39%), Gaps = 17/195 (8%)
Query: 30 SDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGYRGITCFIVERSME 89
+ ++A A + Y ++G+ + S D A+ LV A V+ G F+V
Sbjct: 104 AGSYAPGGRAERVDGGYRVSGTWPFASGCDHADWILVGAIVEDDDGGPLPRAFVV--PRA 161
Query: 90 GFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVG-----------EGYKIAAGFLN 138
+ + + +G++ +G+ ++ D+V VPE ++ Y++ +
Sbjct: 162 EYEIVDTWHVVGLRGTGSNTVVVDDVFVPEHRTLTAGDMMAGDGPGGSTPVYRMPLRQVF 221
Query: 139 QGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACNGGSVQHQISQAVTQVECA 198
+ AA G A+G L + +R V + Q ++++A +++ A
Sbjct: 222 P--LSFAAVSLGAAEGALAEFLELAGKR--VRQYGAAVKMAEAPITQLRLAEAAAELDAA 277
Query: 199 RLLTYNAARLLEAGQ 213
R A R L A
Sbjct: 278 RAFLERATRDLWAHA 292
>gnl|CDD|215178 PLN02312, PLN02312, acyl-CoA oxidase.
Length = 680
Score = 52.1 bits (125), Expect = 6e-07
Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 31/201 (15%)
Query: 262 LGTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGN--HYILN-----GS 313
LGT +K+L G FA++E G GS+ ++T T D +++N
Sbjct: 167 LGTKRHHDKWLKDTEDYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQ 226
Query: 314 KMWISNA-DIANIFLVMANVDVSKGYRGITCFIVE------RSMEGFSVGKKENKLGMKA 366
K WI A + A +V + + ++ G+ FI + + +K+G+
Sbjct: 227 KYWIGGAANHATHTIVFSQLHINGKNEGVHAFIAQIRDQDGNICPNIRIADCGHKIGLNG 286
Query: 367 SGTCSLHFDNVRVPEENIISGVGE-----GYKIA--------AGF---LNQGRIGIAAQM 410
+ FDN+R+P EN+++ V + Y A F L GR+ IA
Sbjct: 287 VDNGRIWFDNLRIPRENLLNSVADVSPDGKYVSAIKDPDQRFGAFLAPLTSGRVTIAVSA 346
Query: 411 TGLAQGCLDATIPYTLERSQF 431
++ L I Y+L R F
Sbjct: 347 IYSSKVGLAIAIRYSLSRRAF 367
Score = 47.5 bits (113), Expect = 1e-05
Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 30/178 (16%)
Query: 19 GSFALSEPGSGSDAFAMKTTATKDGN--HYILN-----GSKMWISNA-DIANIFLVMANV 70
G FA++E G GS+ ++T T D +++N K WI A + A +V + +
Sbjct: 187 GCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQL 246
Query: 71 DVSKGYRGITCFIVE------RSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIIS 124
++ G+ FI + + +K+G+ + FDN+R+P EN+++
Sbjct: 247 HINGKNEGVHAFIAQIRDQDGNICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLN 306
Query: 125 GVGE-----GYKIA--------AGF---LNQGRIGIAAQMTGLAQGCLDATIPYTLER 166
V + Y A F L GR+ IA ++ L I Y+L R
Sbjct: 307 SVADVSPDGKYVSAIKDPDQRFGAFLAPLTSGRVTIAVSAIYSSKVGLAIAIRYSLSR 364
>gnl|CDD|183199 PRK11561, PRK11561, isovaleryl CoA dehydrogenase; Provisional.
Length = 538
Score = 50.1 bits (120), Expect = 2e-06
Identities = 64/286 (22%), Positives = 116/286 (40%), Gaps = 49/286 (17%)
Query: 285 LSEPGSGSDAFAMKTTATK-DGNHYILNGSKMWISNADIANIFLVMANVDVSKGYRGITC 343
++E GSD + T A + Y L G K W + ++ LV+A +KG G++C
Sbjct: 184 MTEKQGGSDVLSNTTRAERLADGSYRLVGHK-WFFSVPQSDAHLVLAQ---AKG--GLSC 237
Query: 344 FIVER-----SMEGFSVGKKENKLGMKASGTCSLHFDNV---RVPEENIISGVGEGYKIA 395
F V R + + ++KLG +++ + + F + + EE GEG ++
Sbjct: 238 FFVPRFLPDGQRNAIRLERLKDKLGNRSNASSEVEFQDAIGWLLGEE------GEGIRLI 291
Query: 396 AGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECA 455
R A GL + I + +R FG + + ++ +S+ A Q+E
Sbjct: 292 LKMGGMTRFDCALGSHGLMRRAFSVAIYHAHQRQVFGKPLIEQPLMRQVLSRMALQLEGQ 351
Query: 456 RLLTYNAARLLEA-GQPFIKQASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYR 514
L + AR + K+A A+ F P K +
Sbjct: 352 TALLFRLARAWDRRADA--KEALWARLFT------------------------PAAK-FV 384
Query: 515 DCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNI 560
CK + ++ +GG+G+ ++ + YR+ V +I+EG+ NI
Sbjct: 385 ICKRGIPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNI 430
>gnl|CDD|178062 PLN02443, PLN02443, acyl-coenzyme A oxidase.
Length = 664
Score = 49.8 bits (119), Expect = 3e-06
Identities = 46/145 (31%), Positives = 72/145 (49%), Gaps = 21/145 (14%)
Query: 261 GLGTTEQKEKYLPRLAQTDA--GSFALSEPGSGSDAFAMKTTATKD--GNHYILN----- 311
G GT EQ++K+LP LA G +A +E G GS+ ++TTAT D + ++++
Sbjct: 112 GQGTEEQQKKWLP-LAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLT 170
Query: 312 GSKMWISNADIANIF-LVMANVDVSKGYRGITCFIVE-RSME------GFSVGKKENKLG 363
SK W + +V A + + GI FIV+ RS++ G +VG K G
Sbjct: 171 SSKWWPGGLGKVSTHAVVYARLITNGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFG 230
Query: 364 MKASGTCS---LHFDNVRVPEENII 385
A T L FD+VR+P + ++
Sbjct: 231 NGAYNTMDNGFLRFDHVRIPRDQML 255
Score = 46.0 bits (109), Expect = 4e-05
Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 21/142 (14%)
Query: 2 TTEQKEKYLPRLAQTDA--GSFALSEPGSGSDAFAMKTTATKD--GNHYILN-----GSK 52
T EQ++K+LP LA G +A +E G GS+ ++TTAT D + ++++ SK
Sbjct: 115 TEEQQKKWLP-LAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSK 173
Query: 53 MWISNADIANIF-LVMANVDVSKGYRGITCFIVE-RSME------GFSVGKKENKLGMKA 104
W + +V A + + GI FIV+ RS++ G +VG K G A
Sbjct: 174 WWPGGLGKVSTHAVVYARLITNGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGA 233
Query: 105 SGTCS---LHFDNVRVPEENII 123
T L FD+VR+P + ++
Sbjct: 234 YNTMDNGFLRFDHVRIPRDQML 255
>gnl|CDD|217220 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal
domain. The N-terminal domain of Acyl-CoA dehydrogenase
is an all-alpha domain.
Length = 113
Score = 36.7 bits (86), Expect = 0.005
Identities = 22/102 (21%), Positives = 33/102 (32%), Gaps = 51/102 (50%)
Query: 226 ASVAKLAKETIAPYVQKMESEEKIDETVLKTLFESGL----------------------- 262
+V + A+E +AP+ + + E + + + L E GL
Sbjct: 9 DTVREFAEEEVAPHAAEWDEEGEFPRELWRKLGELGLLGLTIPEEYGGAGLDYLEYALVA 68
Query: 263 ----------------------------GTTEQKEKYLPRLA 276
GT EQKEKYLP+LA
Sbjct: 69 EELARADASVGLALSVHSSLVAPPILRFGTEEQKEKYLPKLA 110
Score = 29.0 bits (66), Expect = 2.2
Identities = 11/13 (84%), Positives = 12/13 (92%)
Query: 2 TTEQKEKYLPRLA 14
T EQKEKYLP+LA
Sbjct: 98 TEEQKEKYLPKLA 110
>gnl|CDD|184006 PRK13367, PRK13367, protocatechuate 4,5-dioxygenase; Provisional.
Length = 420
Score = 37.4 bits (87), Expect = 0.020
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 13/78 (16%)
Query: 403 RIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLL---- 458
R IA Q+ G+ + L T P+TLERS +RI F H++ + A + R L
Sbjct: 291 RQHIAHQLAGVEK--LPGTYPFTLERSLKAYRINRF---LHRLIEPAWR---ERFLADPE 342
Query: 459 -TYNAARLLEAGQPFIKQ 475
Y+ A L E + I++
Sbjct: 343 ALYDEAGLSEEERDLIRR 360
Score = 34.7 bits (80), Expect = 0.14
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 141 RIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDF 176
R IA Q+ G+ + L T P+TLERS +RI F
Sbjct: 291 RQHIAHQLAGVEK--LPGTYPFTLERSLKAYRINRF 324
>gnl|CDD|162819 TIGR02354, thiF_fam2, thiamine biosynthesis protein ThiF, family 2.
Members of the HesA/MoeB/ThiF family of proteins
(pfam00899) include a number of members encoded in the
midst of thiamine biosynthetic operons. This mix of
known and putative ThiF proteins shows a deep split in
phylogenetic trees, with one the E. coli ThiF and the E.
coli MoeB proteins seemingly more closely related than
E. coli ThiF and Campylobacter (for example) ThiF. This
model represents the divergent clade of putative ThiF
proteins such found in Campylobacter [Biosynthesis of
cofactors, prosthetic groups, and carriers, Thiamine].
Length = 200
Score = 31.0 bits (70), Expect = 1.3
Identities = 26/123 (21%), Positives = 39/123 (31%), Gaps = 34/123 (27%)
Query: 137 LNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIF-DFQACNGGSVQHQISQAVTQV 195
L Q + I GL G L + + L R+ +G I DF ++ Q
Sbjct: 19 LEQATVAIC----GL--GGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQ-------- 64
Query: 196 ECARLLTYNAARLLEAGQPFIKQASMAKYFASVAKLAKETIAPYVQKMESEEKIDETVLK 255
Q Q K A +++ I PY + +EKI E +
Sbjct: 65 -----------------QYKASQVGEPKTEALKENISE--INPYTEIEAYDEKITEENID 105
Query: 256 TLF 258
F
Sbjct: 106 KFF 108
>gnl|CDD|235546 PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase;
Validated.
Length = 246
Score = 30.9 bits (71), Expect = 1.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 476 ASMAKYFASEMAGHITRQCIDWMGGL 501
A+ + AS+ A +IT Q I GG+
Sbjct: 219 ANAVAFLASDAASYITGQVIPVNGGM 244
>gnl|CDD|112039 pfam03207, OspD, Borrelia outer surface protein D (OspD).
Length = 264
Score = 29.8 bits (66), Expect = 3.4
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 183 SVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFAS-VAKLAKETIAPYVQ 241
+ + IS A QV+ A+ ++ A++ E IK++S FA+ +AK A Q
Sbjct: 97 NAVNLISSAADQVKGAQKNMHDLAQMAEIDLEKIKESSDKAIFAANLAKEAYNLTKAAEQ 156
Query: 242 KMESEEKIDETVLKTLFESGLGTTEQKEKY 271
M+ K E +L++ +S E
Sbjct: 157 NMQKLYKEQEEILESESDSDEIEQVSDEIK 186
>gnl|CDD|133406 cd04779, HTH_MerR-like_sg4, Helix-Turn-Helix DNA binding domain of
putative transcription regulators from the MerR
superfamily. Putative helix-turn-helix (HTH) MerR-like
transcription regulators (subgroup 4). Based on sequence
similarity, these proteins are predicted to function as
transcription regulators that mediate responses to
stress in eubacteria. They belong to the MerR
superfamily of transcription regulators that promote
transcription of various stress regulons by
reconfiguring the operator sequence located between the
-35 and -10 promoter elements. A typical MerR regulator
is comprised of two distinct domains that harbor the
regulatory (effector-binding) site and the active
(DNA-binding) site. Their N-terminal domains are
homologous and contain a DNA-binding winged HTH motif,
while the C-terminal domains are often dissimilar and
bind specific coactivator molecules such as metal ions,
drugs, and organic substrates.
Length = 134
Score = 28.2 bits (63), Expect = 5.6
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 11/48 (22%)
Query: 403 RIGIAAQMTGLAQGCLDATIPY-------TLERSQFGHRIFDFQSVQH 443
RIG A + G+++ TI Y T ERS +R +D ++
Sbjct: 2 RIGQLAHLAGVSK----RTIDYYTNLGLLTPERSDSNYRYYDETALDR 45
>gnl|CDD|173561 PTZ00368, PTZ00368, universal minicircle sequence binding protein
(UMSBP); Provisional.
Length = 148
Score = 28.2 bits (63), Expect = 5.9
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 8/41 (19%)
Query: 487 AGHITRQCID-WMGGLGFTKDYPQEKFYRDCKMAGHITRQC 526
GHI+R+C + GG Y +C GHI+R C
Sbjct: 86 TGHISRECPNRAKGGAARRACY-------NCGGEGHISRDC 119
Score = 28.2 bits (63), Expect = 6.8
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 7/40 (17%)
Query: 487 AGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQC 526
GH++R+C + G G Y +C GHI+R+C
Sbjct: 61 TGHLSRECPEAPPGSGPRSCY-------NCGQTGHISREC 93
>gnl|CDD|130890 TIGR01831, fabG_rel, 3-oxoacyl-(acyl-carrier-protein) reductase,
putative. This model represents a small, very well
conserved family of proteins closely related to the FabG
family, TIGR01830, and possibly equal in function. In
all completed genomes with a member of this family, a
FabG in TIGR01830 is also found [Fatty acid and
phospholipid metabolism, Biosynthesis].
Length = 239
Score = 29.1 bits (65), Expect = 5.9
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 469 GQPFIKQASMAKYFASEMAGHITRQCIDWMGGL 501
GQP + AS+A + S+ A ++TRQ I GG+
Sbjct: 207 GQP-AEVASLAGFLMSDGASYVTRQVISVNGGM 238
>gnl|CDD|183778 PRK12829, PRK12829, short chain dehydrogenase; Provisional.
Length = 264
Score = 28.5 bits (64), Expect = 8.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 476 ASMAKYFASEMAGHITRQCIDWMGGL 501
A+ A + AS A +IT Q I G +
Sbjct: 236 AATALFLASPAARYITGQAISVDGNV 261
>gnl|CDD|100270 CHL00170, cpcA, phycocyanin alpha subunit; Reviewed.
Length = 162
Score = 28.0 bits (62), Expect = 9.4
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 12/66 (18%)
Query: 175 DFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQ-------PFIKQASMAKYFAS 227
+ QACNG + +A +E AR LT NA RL++ P+ Q Y +S
Sbjct: 23 ELQACNG-----RFQRAAASLEAARSLTSNAQRLIDGAAQAVYTKFPYTTQMPGPTYASS 77
Query: 228 VAKLAK 233
AK
Sbjct: 78 AIGKAK 83
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.133 0.388
Gapped
Lambda K H
0.267 0.0827 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,526,338
Number of extensions: 2756472
Number of successful extensions: 2224
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2050
Number of HSP's successfully gapped: 106
Length of query: 575
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 473
Effective length of database: 6,413,494
Effective search space: 3033582662
Effective search space used: 3033582662
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.5 bits)