RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5138
(575 letters)
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion,
oxidoreductase, transit peptide, fatty acid metabolism,
FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}
Length = 404
Score = 487 bits (1255), Expect = e-170
Identities = 203/398 (51%), Positives = 252/398 (63%), Gaps = 83/398 (20%)
Query: 227 SVAKLAKETIAPYVQKMESEEKIDETVLKTLFESGL------------------------ 262
SV K A+E IAP V M+ K++++V++ LF+ GL
Sbjct: 39 SVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIE 98
Query: 263 ---------------------------GTTEQKEKYLPRLAQTDAGSFALSEPGSGSDAF 295
GT EQK YLP+L GSF LSE G+GSD+F
Sbjct: 99 ELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTEKVGSFCLSEAGAGSDSF 158
Query: 296 AMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGYRGITCFIVERSMEGFSV 355
A+KT A K+G++Y+LNGSKMWIS+A+ A +FLVMANVD + GY+GIT F+V+R G +
Sbjct: 159 ALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITSFLVDRDTPGLHI 218
Query: 356 GKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQ 415
GK ENKLG++AS TC L F+NV+VPE NI+ +G GYK A G LN+GRIGIAAQM GLAQ
Sbjct: 219 GKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLNEGRIGIAAQMLGLAQ 278
Query: 416 GCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQ 475
GC D TIPY ER QFG R+FDFQ +QHQ++ ATQ+E ARLLTYNAARLLEAG+PFIK+
Sbjct: 279 GCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVATQLEAARLLTYNAARLLEAGKPFIKE 338
Query: 476 ASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGF 535
ASMAKY+ASE +AG T +CI+WMGG+G+
Sbjct: 339 ASMAKYYASE--------------------------------IAGQTTSKCIEWMGGVGY 366
Query: 536 TKDYPQEKYYRDCKVGTIYEGTSNIQLSTIAKYIAKEY 573
TKDYP EKY+RD K+GTIYEG SNIQL+TIAK+I EY
Sbjct: 367 TKDYPVEKYFRDAKIGTIYEGASNIQLNTIAKHIDAEY 404
Score = 378 bits (974), Expect = e-127
Identities = 144/226 (63%), Positives = 175/226 (77%), Gaps = 5/226 (2%)
Query: 2 TTEQKEKYLPRLAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIA 61
T EQK YLP+L GSF LSE G+GSD+FA+KT A K+G++Y+LNGSKMWIS+A+ A
Sbjct: 127 TEEQKATYLPQLTTEKVGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHA 186
Query: 62 NIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEEN 121
+FLVMANVD + GY+GIT F+V+R G +GK ENKLG++AS TC L F+NV+VPE N
Sbjct: 187 GLFLVMANVDPTIGYKGITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEAN 246
Query: 122 IISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACNG 181
I+ +G GYK A G LN+GRIGIAAQM GLAQGC D TIPY ER Q G R+FDFQ
Sbjct: 247 ILGQIGHGYKYAIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQG--- 303
Query: 182 GSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFAS 227
+QHQ++ TQ+E ARLLTYNAARLLEAG+PFIK+ASMAKY+AS
Sbjct: 304 --LQHQVAHVATQLEAARLLTYNAARLLEAGKPFIKEASMAKYYAS 347
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid
metabolism, FAD, polymorphism, flavoprotein,
mitochondrion, disease mutation; HET: FAD COS; 1.9A
{Homo sapiens} PDB: 1jqi_A*
Length = 391
Score = 418 bits (1076), Expect = e-143
Identities = 128/401 (31%), Positives = 196/401 (48%), Gaps = 84/401 (20%)
Query: 227 SVAKLAKETIAPYVQKMESEEKIDETVLKTLFESGL------------------------ 262
+ A++ + P +++ E +K + GL
Sbjct: 16 TCRDFAEKELFPIAAQVDKEHLFPAAQVKKMGGLGLLAMDVPEELGGAGLDYLAYAIAME 75
Query: 263 ---------------------------GTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDA 294
G+ EQK+ ++ D G FALSEPG+GSDA
Sbjct: 76 EISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDA 135
Query: 295 FAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGYRGITCFIVERSMEGFS 354
A TTA +G+ ++LNG+K WI+NA A+ +V A+ D + + I+ F+V G +
Sbjct: 136 GAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQNKSISAFLVPMPTPGLT 195
Query: 355 VGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLA 414
+GKKE+KLG++ S T +L F++ R+P+++I+ G G+KIA L+ GRIGIA+Q G+A
Sbjct: 196 LGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLDMGRIGIASQALGIA 255
Query: 415 QGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQPFIK 474
Q LD + Y R FG + Q +Q +++ A +E ARLLT+ AA L + +PFIK
Sbjct: 256 QTALDCAVNYAENRMAFGAPLTKLQVIQFKLADMALALESARLLTWRAAMLKDNKKPFIK 315
Query: 475 QASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLG 534
+A+MAK ASE A I+ Q I Q +GG+G
Sbjct: 316 EAAMAKLAASEAATAISHQAI-----------------------------QI---LGGMG 343
Query: 535 FTKDYPQEKYYRDCKVGTIYEGTSNIQLSTIAKYIAKEYTS 575
+ + P E++YRD ++ IYEGTS IQ IA ++ + Y S
Sbjct: 344 YVTEMPAERHYRDARITEIYEGTSEIQRLVIAGHLLRSYRS 384
Score = 337 bits (868), Expect = e-111
Identities = 93/227 (40%), Positives = 140/227 (61%), Gaps = 6/227 (2%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 60
+ EQK+ ++ D G FALSEPG+GSDA A TTA +G+ ++LNG+K WI+NA
Sbjct: 104 SKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAWE 163
Query: 61 ANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEE 120
A+ +V A+ D + + I+ F+V G ++GKKE+KLG++ S T +L F++ R+P++
Sbjct: 164 ASAAVVFASTDRALQNKSISAFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKD 223
Query: 121 NIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACN 180
+I+ G G+KIA L+ GRIGIA+Q G+AQ LD + Y R G + Q
Sbjct: 224 SILGEPGMGFKIAMQTLDMGRIGIASQALGIAQTALDCAVNYAENRMAFGAPLTKLQV-- 281
Query: 181 GGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFAS 227
+Q +++ +E ARLLT+ AA L + +PFIK+A+MAK AS
Sbjct: 282 ---IQFKLADMALALESARLLTWRAAMLKDNKKPFIKEAAMAKLAAS 325
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national
project protein structural and functional analyses; HET:
FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1
PDB: 1ws9_A 2cx9_A*
Length = 387
Score = 407 bits (1049), Expect = e-139
Identities = 126/402 (31%), Positives = 187/402 (46%), Gaps = 88/402 (21%)
Query: 227 SVAKLAKETIAPYVQKMESEEKIDETVLKTLFESGL------------------------ 262
+ K +AP + + +++ L E G+
Sbjct: 17 PFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVE 76
Query: 263 ---------------------------GTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDA 294
G+ QKE +LP+LA +A G++ L+EPGSGSDA
Sbjct: 77 AIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDA 136
Query: 295 FAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVD----VSKGYRGITCFIVERSM 350
A+KT A K + LNG+K +I+ +A +++VMA D + ++GI+ F R
Sbjct: 137 AALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPE 196
Query: 351 EGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQM 410
G VG+KE KLG+ AS T L +++ VPEE ++ G+G+ L+ GRIGIAA
Sbjct: 197 RGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDVLRVLDGGRIGIAAMA 256
Query: 411 TGLAQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQ 470
GL Q LD + Y R FG I +F+ V ++++AAT++E ARLL AA L +AG+
Sbjct: 257 VGLGQAALDYALAYAKGREAFGRPIAEFEGVSFKLAEAATELEAARLLYLKAAELKDAGR 316
Query: 471 PFIKQASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWM 530
PF +A+ AK FASE A + I Q +
Sbjct: 317 PFTLEAAQAKLFASEAAVKACDEAI-----------------------------QI---L 344
Query: 531 GGLGFTKDYPQEKYYRDCKVGTIYEGTSNIQLSTIAKYIAKE 572
GG G+ KDYP E+Y+RD ++ I EGTS I IA+ + +
Sbjct: 345 GGYGYVKDYPVERYWRDARLTRIGEGTSEILKLVIARRLLEA 386
Score = 332 bits (854), Expect = e-110
Identities = 94/231 (40%), Positives = 137/231 (59%), Gaps = 10/231 (4%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 60
+ QKE +LP+LA +A G++ L+EPGSGSDA A+KT A K + LNG+K +I+ +
Sbjct: 105 SEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSV 164
Query: 61 ANIFLVMANVD----VSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVR 116
A +++VMA D + ++GI+ F R G VG+KE KLG+ AS T L +++
Sbjct: 165 AGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLF 224
Query: 117 VPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDF 176
VPEE ++ G+G+ L+ GRIGIAA GL Q LD + Y R G I +F
Sbjct: 225 VPEEALLGERGKGFYDVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEF 284
Query: 177 QACNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFAS 227
+ V ++++A T++E ARLL AA L +AG+PF +A+ AK FAS
Sbjct: 285 EG-----VSFKLAEAATELEAARLLYLKAAELKDAGRPFTLEAAQAKLFAS 330
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain
acyl-COA dehydrogenase, flavoprotein, oxidoreductase;
HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP:
a.29.3.1 e.6.1.1
Length = 383
Score = 406 bits (1046), Expect = e-138
Identities = 117/311 (37%), Positives = 175/311 (56%), Gaps = 34/311 (10%)
Query: 263 GTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDG-NHYILNGSKMWISNA 320
GT QKEK+L L + G+F L+EP +G+DA +T ATK+ Y LNGSK++I+N
Sbjct: 105 GTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNG 164
Query: 321 DIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVP 380
A+I++V A D SKG GIT FI+E GF+ GKKE+K+G+ S T L F +V+VP
Sbjct: 165 GAADIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVP 224
Query: 381 EENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQS 440
EN++ G+G+KIA L+ GRIG+AAQ G+A+ L + Y+ +R QFG + FQS
Sbjct: 225 AENMLGEEGKGFKIAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQS 284
Query: 441 VQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMGG 500
+ +++ Q+E AR L Y AA + G+PF A++AK AS++A +T + +
Sbjct: 285 ISFKLADMKMQIEAARNLVYKAACKKQEGKPFTVDAAIAKRVASDVAMRVTTEAV----- 339
Query: 501 LGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNI 560
Q GG G++++YP ++ RD K+ IYEGT+ +
Sbjct: 340 ------------------------QI---FGGYGYSEEYPVARHMRDAKITQIYEGTNEV 372
Query: 561 QLSTIAKYIAK 571
QL + +
Sbjct: 373 QLMVTGGALLR 383
Score = 332 bits (853), Expect = e-109
Identities = 96/228 (42%), Positives = 139/228 (60%), Gaps = 7/228 (3%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDG-NHYILNGSKMWISNAD 59
T QKEK+L L + G+F L+EP +G+DA +T ATK+ Y LNGSK++I+N
Sbjct: 106 TEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGG 165
Query: 60 IANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPE 119
A+I++V A D SKG GIT FI+E GF+ GKKE+K+G+ S T L F +V+VP
Sbjct: 166 AADIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPA 225
Query: 120 ENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQAC 179
EN++ G+G+KIA L+ GRIG+AAQ G+A+ L + Y+ +R Q G + FQ+
Sbjct: 226 ENMLGEEGKGFKIAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQS- 284
Query: 180 NGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFAS 227
+ +++ Q+E AR L Y AA + G+PF A++AK AS
Sbjct: 285 ----ISFKLADMKMQIEAARNLVYKAACKKQEGKPFTVDAAIAKRVAS 328
Score = 28.2 bits (64), Expect = 7.1
Identities = 6/36 (16%), Positives = 16/36 (44%)
Query: 227 SVAKLAKETIAPYVQKMESEEKIDETVLKTLFESGL 262
++ +AP V + + + D+ ++ L G+
Sbjct: 15 LAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGI 50
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP:
a.29.3.1 e.6.1.1
Length = 379
Score = 404 bits (1041), Expect = e-138
Identities = 135/393 (34%), Positives = 191/393 (48%), Gaps = 83/393 (21%)
Query: 228 VAKLAKETIAPYVQKMESEEKIDETVLKTLFESGL------------------------- 262
+ AKE I P Q+ + +E++ V++ L E GL
Sbjct: 16 ARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYGGMGLKMLDEVIVGEE 75
Query: 263 -------------------------GTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFA 296
GT EQKE++L L + A +FALSEPG+GSDA A
Sbjct: 76 LAYACMGIYTIPMASDLGITPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAA 135
Query: 297 MKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVG 356
+KT A + G+HY+LNG+KMWISN A +V A V+ ++G+ +VER GF
Sbjct: 136 LKTRAIRQGDHYVLNGTKMWISNGGEAEWVVVFATVNPELRHKGVVALVVERGTPGFKAI 195
Query: 357 KKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQG 416
K K+G +ASGT L F++V+VP EN + GEG+KIA LN+ RI +AA G+A+
Sbjct: 196 KIHGKMGQRASGTYELVFEDVKVPVENRLGEEGEGFKIAMQTLNKTRIPVAAGSVGVARR 255
Query: 417 CLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQA 476
LD Y ER FG I +FQ++Q ++ +E AR+ TY AA L + G P +
Sbjct: 256 ALDEARKYAKEREAFGEPIANFQAIQFKLVDMLIGIETARMYTYYAAWLADQGLPHAHAS 315
Query: 477 SMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFT 536
++AK +ASE+A Q I Q GG G+
Sbjct: 316 AIAKAYASEIAFEAANQAI-----------------------------QI---HGGYGYV 343
Query: 537 KDYPQEKYYRDCKVGTIYEGTSNIQLSTIAKYI 569
+++P EK RD K+ IYEGT+ IQ IA++I
Sbjct: 344 REFPVEKLLRDVKLNQIYEGTNEIQRLIIARHI 376
Score = 334 bits (860), Expect = e-110
Identities = 98/227 (43%), Positives = 137/227 (60%), Gaps = 6/227 (2%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 60
T EQKE++L L + A +FALSEPG+GSDA A+KT A + G+HY+LNG+KMWISN
Sbjct: 102 TEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGE 161
Query: 61 ANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEE 120
A +V A V+ ++G+ +VER GF K K+G +ASGT L F++V+VP E
Sbjct: 162 AEWVVVFATVNPELRHKGVVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVE 221
Query: 121 NIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACN 180
N + GEG+KIA LN+ RI +AA G+A+ LD Y ER G I +FQA
Sbjct: 222 NRLGEEGEGFKIAMQTLNKTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQA-- 279
Query: 181 GGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFAS 227
+Q ++ + +E AR+ TY AA L + G P +++AK +AS
Sbjct: 280 ---IQFKLVDMLIGIETARMYTYYAAWLADQGLPHAHASAIAKAYAS 323
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national
project on protein STR and functional analyses; HET:
FAD; 2.50A {Thermus thermophilus}
Length = 372
Score = 403 bits (1037), Expect = e-137
Identities = 119/398 (29%), Positives = 188/398 (47%), Gaps = 89/398 (22%)
Query: 226 ASVAKLAKETIAPYVQKMESEEKIDETVLKTLFESGL----------------------- 262
+V ++A+E + P + + + + LK L E GL
Sbjct: 12 DAVRRVAREVLYPLAPEYDRKAEYPWPQLKALAELGLLGMTTPEEWGGVGLDSVTWALAL 71
Query: 263 ----------------------------GTTEQKEKYLPRLAQTDA-GSFALSEPGSGSD 293
G+ QK +YL LA+ + G+F L+EP +GSD
Sbjct: 72 EELAAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFCLTEPQAGSD 131
Query: 294 AFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGYRGITCFIVERSMEGF 353
A +++ A + ++LNG K WI++A A++++VMA + +GI+ F+VE+ G
Sbjct: 132 AKSLRAEARRVKGGFVLNGVKSWITSAGHAHLYVVMARTE-----KGISAFLVEKGTPGL 186
Query: 354 SVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGL 413
S G+ E K+G+ A+ T + + V VPEEN++ G G A L+ GR+G+AAQ G+
Sbjct: 187 SFGRPEEKMGLHAAHTAEVRLEEVFVPEENLLGEEGRGLAYALAGLDSGRVGVAAQAVGI 246
Query: 414 AQGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQPFI 473
A+G + Y ER QFG ++ + Q++ +I+ ++ AR L AAR + G+ F
Sbjct: 247 ARGAFEIAKAYAEEREQFGKKLKEHQAIAFKIADMHVKIAAARALVLEAARKKDRGERFT 306
Query: 474 KQASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGL 533
+AS AK FAS A +TR+ + Q +GG
Sbjct: 307 LEASAAKLFASAAAVEVTREAV-----------------------------QV---LGGY 334
Query: 534 GFTKDYPQEKYYRDCKVGTIYEGTSNIQLSTIAKYIAK 571
G+ +DY E+YYRD KV IYEGTS IQ IA+ + +
Sbjct: 335 GYHRDYRVERYYRDAKVTEIYEGTSEIQRLVIARELYR 372
Score = 327 bits (841), Expect = e-108
Identities = 82/227 (36%), Positives = 131/227 (57%), Gaps = 11/227 (4%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 60
+ QK +YL LA+ + G+F L+EP +GSDA +++ A + ++LNG K WI++A
Sbjct: 101 SEAQKRRYLVPLARGEWIGAFCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGH 160
Query: 61 ANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEE 120
A++++VMA + +GI+ F+VE+ G S G+ E K+G+ A+ T + + V VPEE
Sbjct: 161 AHLYVVMARTE-----KGISAFLVEKGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEE 215
Query: 121 NIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACN 180
N++ G G A L+ GR+G+AAQ G+A+G + Y ER Q G ++ + QA
Sbjct: 216 NLLGEEGRGLAYALAGLDSGRVGVAAQAVGIARGAFEIAKAYAEEREQFGKKLKEHQA-- 273
Query: 181 GGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFAS 227
+ +I+ ++ AR L AAR + G+ F +AS AK FAS
Sbjct: 274 ---IAFKIADMHVKIAAARALVLEAARKKDRGERFTLEASAAKLFAS 317
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
FDA; 2.10A {Mycobacterium thermoresistibile}
Length = 393
Score = 403 bits (1039), Expect = e-137
Identities = 133/398 (33%), Positives = 194/398 (48%), Gaps = 84/398 (21%)
Query: 226 ASVAKLAKETIAPYVQKMESEEKIDETVLKTLFESGL----------------------- 262
++ LA++ IAPY +++ + + E L L SG
Sbjct: 28 EAIRALAEKEIAPYAAEVDEKARFPEEALAALNSSGFSAIHVPEEYGGQGADSVATCIVI 87
Query: 263 ---------------------------GTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDA 294
G+ E K++ LP +A +A S+ALSE +GSDA
Sbjct: 88 EEVARVDCSASLIPAVNKLGTMGLILRGSEELKKQVLPAVASGEAMASYALSEREAGSDA 147
Query: 295 FAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGYRGITCFIVERSMEGFS 354
+M+T A DG+ +ILNGSK WI+N + + VMA D KG GI+ F+V + EGF+
Sbjct: 148 ASMRTRAVADGDDWILNGSKCWITNGGKSTWYTVMAVTDPDKGANGISAFMVHKDDEGFT 207
Query: 355 VGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLA 414
VG KE KLG+K S T L+F+N R+P + II G G+K A L+ R I AQ G+A
Sbjct: 208 VGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFKTALATLDHTRPTIGAQAVGIA 267
Query: 415 QGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQ-PFI 473
QG LDA I YT ER QFG + D Q VQ ++ A ++E ARL+ Y+AA E G+
Sbjct: 268 QGALDAAIAYTKERKQFGRPVSDNQGVQFMLADMAMKIEAARLMVYSAAARAERGEGDLG 327
Query: 474 KQASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGL 533
++ +K FAS++A +T + Q GG
Sbjct: 328 FISAASKCFASDVAMEVTTDAV-----------------------------QL---FGGY 355
Query: 534 GFTKDYPQEKYYRDCKVGTIYEGTSNIQLSTIAKYIAK 571
G+T+D+P E+ RD K+ IYEGT+ IQ +++ + +
Sbjct: 356 GYTQDFPVERMMRDAKITQIYEGTNQIQRVVMSRALLR 393
Score = 330 bits (849), Expect = e-109
Identities = 99/228 (43%), Positives = 136/228 (59%), Gaps = 7/228 (3%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 60
+ E K++ LP +A +A S+ALSE +GSDA +M+T A DG+ +ILNGSK WI+N
Sbjct: 116 SEELKKQVLPAVASGEAMASYALSEREAGSDAASMRTRAVADGDDWILNGSKCWITNGGK 175
Query: 61 ANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEE 120
+ + VMA D KG GI+ F+V + EGF+VG KE KLG+K S T L+F+N R+P +
Sbjct: 176 STWYTVMAVTDPDKGANGISAFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGD 235
Query: 121 NIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACN 180
II G G+K A L+ R I AQ G+AQG LDA I YT ER Q G + D Q
Sbjct: 236 RIIGEPGTGFKTALATLDHTRPTIGAQAVGIAQGALDAAIAYTKERKQFGRPVSDNQG-- 293
Query: 181 GGSVQHQISQAVTQVECARLLTYNAARLLEAGQ-PFIKQASMAKYFAS 227
VQ ++ ++E ARL+ Y+AA E G+ ++ +K FAS
Sbjct: 294 ---VQFMLADMAMKIEAARLMVYSAAARAERGEGDLGFISAASKCFAS 338
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron
transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1
e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A*
3mdd_A* 3mde_A*
Length = 396
Score = 398 bits (1025), Expect = e-135
Identities = 107/317 (33%), Positives = 166/317 (52%), Gaps = 36/317 (11%)
Query: 263 GTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 321
G +QK+KYL R+ + ++ ++EPG+GSD +KT A K G+ YI+NG KMWI+N
Sbjct: 112 GNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGG 171
Query: 322 IANIFLVMANVDV---SKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVR 378
AN + ++A D + + T FIVE G +G+KE +G + S T + F++V+
Sbjct: 172 KANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVK 231
Query: 379 VPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDF 438
VP+EN++ G G G+K+A G ++ R +AA GLAQ LD Y LER FG + +
Sbjct: 232 VPKENVLIGDGAGFKVAMGAFDKERPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEH 291
Query: 439 QSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWM 498
Q++ +++ A +VE AR+ AA +++G+ AS+AK FA ++A + +
Sbjct: 292 QAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAV--- 348
Query: 499 GGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTS 558
Q +GG GF +YP EK RD K+ IY GTS
Sbjct: 349 --------------------------QI---LGGNGFNTEYPVEKLMRDAKIYQIYGGTS 379
Query: 559 NIQLSTIAKYIAKEYTS 575
IQ +A+ +Y +
Sbjct: 380 QIQRLIVAREHIDKYKN 396
Score = 326 bits (839), Expect = e-107
Identities = 83/230 (36%), Positives = 130/230 (56%), Gaps = 9/230 (3%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 60
+QK+KYL R+ + ++ ++EPG+GSD +KT A K G+ YI+NG KMWI+N
Sbjct: 113 NDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGK 172
Query: 61 ANIFLVMANVDV---SKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRV 117
AN + ++A D + + T FIVE G +G+KE +G + S T + F++V+V
Sbjct: 173 ANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKV 232
Query: 118 PEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQ 177
P+EN++ G G G+K+A G ++ R +AA GLAQ LD Y LER G + + Q
Sbjct: 233 PKENVLIGDGAGFKVAMGAFDKERPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQ 292
Query: 178 ACNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFAS 227
A + +++ +VE AR+ AA +++G+ AS+AK FA
Sbjct: 293 A-----ISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFAG 337
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for
infectious disease, S FAD, FADH, tuberculosis,
oxidoredu; HET: FAD; 2.35A {Mycobacterium
thermoresistibile}
Length = 387
Score = 396 bits (1019), Expect = e-134
Identities = 120/397 (30%), Positives = 186/397 (46%), Gaps = 85/397 (21%)
Query: 226 ASVAKLAKETIAPYVQKMESEEKIDETVLKTLFESGL----------------------- 262
++A + + P V + E +E E V + L +GL
Sbjct: 25 ELTREIADKVLDPIVDRHEKDETYPEGVFEQLGAAGLLSLPQPEEWGGGGQPYEVYLQVL 84
Query: 263 ---------------------------GTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDA 294
GT EQK+++LP + + G+++LSEP +GSDA
Sbjct: 85 EEIAARWASVAVAVSVHSLSSHPLLVFGTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDA 144
Query: 295 FAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGYRGITCFIVERSMEGFS 354
A++ AT Y++NGSK WI++ A+ + + A +G RG++CF+V G S
Sbjct: 145 AALRCAATPTDGGYVINGSKSWITHGGKADFYTLFARTG--EGSRGVSCFLVPADQPGLS 202
Query: 355 VGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLA 414
GK E K+G+ A T S +DN R+ + I G+G +IA L+ GR+GIAA TGLA
Sbjct: 203 FGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQIAFSALDSGRLGIAAVATGLA 262
Query: 415 QGCLDATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQPFIK 474
Q LD + Y ER+ FG +I D Q + ++ A V AR +AAR + G+P+ +
Sbjct: 263 QAALDEAVAYANERTAFGRKIIDHQGLGFLLADMAAAVATARATYLDAARRRDQGRPYSQ 322
Query: 475 QASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLG 534
QAS+AK A++ A +T + Q GG+G
Sbjct: 323 QASIAKLTATDAAMKVTTDAV-----------------------------QV---FGGVG 350
Query: 535 FTKDYPQEKYYRDCKVGTIYEGTSNIQLSTIAKYIAK 571
+T+DY E+Y R+ K+ I+EGT+ IQ IA+ + +
Sbjct: 351 YTRDYRVERYMREAKIMQIFEGTNQIQRLVIARGLTR 387
Score = 324 bits (834), Expect = e-106
Identities = 86/227 (37%), Positives = 130/227 (57%), Gaps = 8/227 (3%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 60
T EQK+++LP + + G+++LSEP +GSDA A++ AT Y++NGSK WI++
Sbjct: 113 TEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGGK 172
Query: 61 ANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEE 120
A+ + + A +G RG++CF+V G S GK E K+G+ A T S +DN R+ +
Sbjct: 173 ADFYTLFARTG--EGSRGVSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARIDAD 230
Query: 121 NIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACN 180
I G+G +IA L+ GR+GIAA TGLAQ LD + Y ER+ G +I D Q
Sbjct: 231 RRIGEEGQGLQIAFSALDSGRLGIAAVATGLAQAALDEAVAYANERTAFGRKIIDHQG-- 288
Query: 181 GGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFAS 227
+ ++ V AR +AAR + G+P+ +QAS+AK A+
Sbjct: 289 ---LGFLLADMAAAVATARATYLDAARRRDQGRPYSQQASIAKLTAT 332
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA
dehydrogenase, flavoprotein, isovaleric acidemia; HET:
FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Length = 394
Score = 391 bits (1007), Expect = e-132
Identities = 108/314 (34%), Positives = 158/314 (50%), Gaps = 35/314 (11%)
Query: 263 GTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 321
G QKEKYLP+L + G+ A+SEP +GSD +MK A K GNHYILNG+K WI+N
Sbjct: 112 GNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGP 171
Query: 322 IANIFLVMANVDVSK--GYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRV 379
A++ +V A D++ RGIT FIVE+ M GFS KK +KLGM+ S TC L F++ ++
Sbjct: 172 DADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKI 231
Query: 380 PEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQ 439
P NI+ +G + L+ R+ +A GL Q LD TIPY R FG +I FQ
Sbjct: 232 PAANILGHENKGVYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQ 291
Query: 440 SVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMG 499
+Q +++ T++ R YN A+ + G K + +++E A + I
Sbjct: 292 LMQGKMADMYTRLMACRQYVYNVAKACDEGHCTAKDCAGVILYSAECATQVALDGI---- 347
Query: 500 GLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSN 559
QC GG G+ D+P ++ RD K+ I GTS
Sbjct: 348 -------------------------QC---FGGNGYINDFPMGRFLRDAKLYEIGAGTSE 379
Query: 560 IQLSTIAKYIAKEY 573
++ I + ++
Sbjct: 380 VRRLVIGRAFNADF 393
Score = 318 bits (817), Expect = e-104
Identities = 88/229 (38%), Positives = 127/229 (55%), Gaps = 8/229 (3%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 60
QKEKYLP+L + G+ A+SEP +GSD +MK A K GNHYILNG+K WI+N
Sbjct: 113 NEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPD 172
Query: 61 ANIFLVMANVDVSK--GYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVP 118
A++ +V A D++ RGIT FIVE+ M GFS KK +KLGM+ S TC L F++ ++P
Sbjct: 173 ADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIP 232
Query: 119 EENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQA 178
NI+ +G + L+ R+ +A GL Q LD TIPY R G +I FQ
Sbjct: 233 AANILGHENKGVYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQL 292
Query: 179 CNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFAS 227
+Q +++ T++ R YN A+ + G K + +++
Sbjct: 293 -----MQGKMADMYTRLMACRQYVYNVAKACDEGHCTAKDCAGVILYSA 336
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET:
FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*
Length = 397
Score = 382 bits (984), Expect = e-129
Identities = 116/310 (37%), Positives = 160/310 (51%), Gaps = 36/310 (11%)
Query: 263 GTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 321
G+ K+KY+P+L+ + G F ++EP +GSD AM +TA G+H++LNGSK WISNA
Sbjct: 105 GSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAA 164
Query: 322 IANIFLVMANVDVSKGYRGITCFIVE-RSMEGFSVGKKENKLGMKASGTCSLHFDNVRVP 380
A++ + A D + G RG++ F++E R+ G E KLG AS T L DNV+VP
Sbjct: 165 QADVLIYYAYTDKAAGSRGLSAFVIEPRNFPGIKTSNLE-KLGSHASPTGELFLDNVKVP 223
Query: 381 EENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQS 440
+ENI+ G+G +I G LN R+ AA GLAQ CLDA I Y ER QFG I DFQ
Sbjct: 224 KENILGKPGDGARIVFGSLNHTRLSAAAGGVGLAQACLDAAIKYCNERRQFGKPIGDFQM 283
Query: 441 VQHQISQAATQVECARLLTYNAARLLEAGQ-PFIKQASMAKYFASEMAGHITRQCIDWMG 499
Q I+Q A +VE ARLL Y AA + G+ +MAKY A E +
Sbjct: 284 NQDMIAQMAVEVEAARLLAYKAAAAKDEGRLNNGLDVAMAKYAAGEAVSKCANYAM---- 339
Query: 500 GLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSN 559
+ +G G++ +YP ++YRD + EG++N
Sbjct: 340 -------------------------RI---LGAYGYSTEYPVARFYRDAPTYYMVEGSAN 371
Query: 560 IQLSTIAKYI 569
I IA
Sbjct: 372 ICKMIIALDQ 381
Score = 314 bits (807), Expect = e-102
Identities = 99/229 (43%), Positives = 132/229 (57%), Gaps = 9/229 (3%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 60
+ K+KY+P+L+ + G F ++EP +GSD AM +TA G+H++LNGSK WISNA
Sbjct: 106 SEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAAQ 165
Query: 61 ANIFLVMANVDVSKGYRGITCFIVE-RSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPE 119
A++ + A D + G RG++ F++E R+ G E KLG AS T L DNV+VP+
Sbjct: 166 ADVLIYYAYTDKAAGSRGLSAFVIEPRNFPGIKTSNLE-KLGSHASPTGELFLDNVKVPK 224
Query: 120 ENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQAC 179
ENI+ G+G +I G LN R+ AA GLAQ CLDA I Y ER Q G I DFQ
Sbjct: 225 ENILGKPGDGARIVFGSLNHTRLSAAAGGVGLAQACLDAAIKYCNERRQFGKPIGDFQM- 283
Query: 180 NGGSVQHQISQAVTQVECARLLTYNAARLLEAGQ-PFIKQASMAKYFAS 227
Q I+Q +VE ARLL Y AA + G+ +MAKY A
Sbjct: 284 ----NQDMIAQMAVEVEAARLLAYKAAAAKDEGRLNNGLDVAMAKYAAG 328
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA
dehydrogenase, , aldehyde dehydrogenase, oxidoreductase;
HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP:
a.29.3.1 e.6.1.1
Length = 366
Score = 379 bits (977), Expect = e-128
Identities = 74/309 (23%), Positives = 122/309 (39%), Gaps = 38/309 (12%)
Query: 263 GTTEQKEKYLPRLAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 322
G Q+ +L L + SE +GSD AM+T DG+ +++G K+W + A
Sbjct: 89 GDAGQRATFLKELTSGKLAAVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAY 148
Query: 323 ANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEE 382
A+ +V + G +V G V + G +A+G LH D VRVP
Sbjct: 149 ADHLVVFGLQEDGSG----AVVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVRVPAG 204
Query: 383 NIISGVGEGYKIAA-GFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSV 441
+++G G + L GR +A G+ + C A + + R QFG + D Q V
Sbjct: 205 AVLAGSGASLPMLVAASLAYGRKSVAWGCVGILRACRTAAVAHARTREQFGRPLGDHQLV 264
Query: 442 QHQISQAATQVECARLLTYNAARLLEAGQPFIKQAS-MAKYFASEMAGHITRQCIDWMGG 500
I+ T + A + A+ + G P + A+ +AK+ A+E A
Sbjct: 265 AGHIADLWTAEQIAARVCEYASDHWDEGSPEMVPATILAKHVAAERAAAGAATAA----- 319
Query: 501 LGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNI 560
Q + G + + E+ YRD K+ I EG+S +
Sbjct: 320 ------------------------QV---LASAGAREGHVVERAYRDAKLMEIIEGSSEM 352
Query: 561 QLSTIAKYI 569
+A++
Sbjct: 353 CRVMLAQHA 361
Score = 314 bits (806), Expect = e-103
Identities = 58/228 (25%), Positives = 96/228 (42%), Gaps = 11/228 (4%)
Query: 2 TTEQKEKYLPRLAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIA 61
Q+ +L L + SE +GSD AM+T DG+ +++G K+W + A A
Sbjct: 90 DAGQRATFLKELTSGKLAAVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYA 149
Query: 62 NIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEEN 121
+ +V + G +V G V + G +A+G LH D VRVP
Sbjct: 150 DHLVVFGLQEDGSG----AVVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVRVPAGA 205
Query: 122 IISGVGEGYKIAA-GFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACN 180
+++G G + L GR +A G+ + C A + + R Q G + D Q
Sbjct: 206 VLAGSGASLPMLVAASLAYGRKSVAWGCVGILRACRTAAVAHARTREQFGRPLGDHQL-- 263
Query: 181 GGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQAS-MAKYFAS 227
V I+ T + A + A+ + G P + A+ +AK+ A+
Sbjct: 264 ---VAGHIADLWTAEQIAARVCEYASDHWDEGSPEMVPATILAKHVAA 308
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial;
flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC;
1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Length = 393
Score = 378 bits (974), Expect = e-127
Identities = 108/312 (34%), Positives = 160/312 (51%), Gaps = 35/312 (11%)
Query: 263 GTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 321
G EQ+ K+ P L + S+ L+EPGSGSDA ++ T+A K G+HYILNGSK +IS A
Sbjct: 115 GNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAG 174
Query: 322 IANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPE 381
++I++VM G +GI+C +VE+ G S GKKE K+G + T ++ F++ VP
Sbjct: 175 ESDIYVVMCRTG-GPGPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPV 233
Query: 382 ENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSV 441
N I G+G+ IA LN GRI IA+ G A + T + R QFG + Q +
Sbjct: 234 ANRIGSEGQGFLIAVRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQYL 293
Query: 442 QHQISQAATQVECARLLTYNAARLL-EAGQPFIKQASMAKYFASEMAGHITRQCIDWMGG 500
Q ++ AT++ ARL+ NAA L E + + SMAK FA++ I Q +
Sbjct: 294 QFTLADMATRLVAARLMVRNAAVALQEERKDAVALCSMAKLFATDECFAICNQAL----- 348
Query: 501 LGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNI 560
Q GG G+ KDY ++Y RD +V I EG++ +
Sbjct: 349 ------------------------QM---HGGYGYLKDYAVQQYVRDSRVHQILEGSNEV 381
Query: 561 QLSTIAKYIAKE 572
I++ + +E
Sbjct: 382 MRILISRSLLQE 393
Score = 310 bits (796), Expect = e-101
Identities = 87/228 (38%), Positives = 126/228 (55%), Gaps = 8/228 (3%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 60
EQ+ K+ P L + S+ L+EPGSGSDA ++ T+A K G+HYILNGSK +IS A
Sbjct: 116 NEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGE 175
Query: 61 ANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEE 120
++I++VM G +GI+C +VE+ G S GKKE K+G + T ++ F++ VP
Sbjct: 176 SDIYVVMCRTG-GPGPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVA 234
Query: 121 NIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACN 180
N I G+G+ IA LN GRI IA+ G A + T + R Q G + Q
Sbjct: 235 NRIGSEGQGFLIAVRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQY-- 292
Query: 181 GGSVQHQISQAVTQVECARLLTYNAARLL-EAGQPFIKQASMAKYFAS 227
+Q ++ T++ ARL+ NAA L E + + SMAK FA+
Sbjct: 293 ---LQFTLADMATRLVAARLMVRNAAVALQEERKDAVALCSMAKLFAT 337
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid
metabolism, transit peptide, disease mutation, LI
metabolism, coenzyme A dehydrogenase; HET: FAD TH3;
1.45A {Homo sapiens} PDB: 3b96_A*
Length = 607
Score = 376 bits (968), Expect = e-124
Identities = 113/320 (35%), Positives = 168/320 (52%), Gaps = 41/320 (12%)
Query: 263 GTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATK--DGNHYILNGSKMWISN 319
GT QKEKYLP+LA + +F L+EP SGSDA +++T+A G +Y LNGSK+WISN
Sbjct: 145 GTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISN 204
Query: 320 ADIANIFLVMANVDVSKGYRG-----ITCFIVERSMEGFSVGKKENKLGMKASGTCSLHF 374
+A+IF V A V+ G IT F+VER G + G E K+G+KAS T + F
Sbjct: 205 GGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGIKASNTAEVFF 264
Query: 375 DNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHR 434
D VRVP EN++ VG G+K+A LN GR G+AA + G +G + + + R+QFG +
Sbjct: 265 DGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFGEK 324
Query: 435 IFDFQSVQHQISQAATQVECARLLTYNAARLLEAG-QPFIKQASMAKYFASEMAGHITRQ 493
I +F +Q ++++ + Y + ++ G F +A+++K F SE A +T +
Sbjct: 325 IHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQGATDFQIEAAISKIFGSEAAWKVTDE 384
Query: 494 CIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTI 553
CI MGG+GF K+ E+ RD + I R I
Sbjct: 385 CIQIMGGMGFMKEPGVERVLRDLR----IFR----------------------------I 412
Query: 554 YEGTSNIQLSTIAKYIAKEY 573
+EGT++I +A +
Sbjct: 413 FEGTNDILRLFVALQGCMDK 432
Score = 305 bits (784), Expect = 1e-96
Identities = 90/235 (38%), Positives = 134/235 (57%), Gaps = 14/235 (5%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATK--DGNHYILNGSKMWISNA 58
T QKEKYLP+LA + +F L+EP SGSDA +++T+A G +Y LNGSK+WISN
Sbjct: 146 TKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNG 205
Query: 59 DIANIFLVMANVDVSKGYRG-----ITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFD 113
+A+IF V A V+ G IT F+VER G + G E K+G+KAS T + FD
Sbjct: 206 GLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGIKASNTAEVFFD 265
Query: 114 NVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRI 173
VRVP EN++ VG G+K+A LN GR G+AA + G +G + + + R+Q G +I
Sbjct: 266 GVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFGEKI 325
Query: 174 FDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAG-QPFIKQASMAKYFAS 227
+F +Q ++++ V + Y + ++ G F +A+++K F S
Sbjct: 326 HNFGL-----IQEKLARMVMLQYVTESMAYMVSANMDQGATDFQIEAAISKIFGS 375
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na
project on protein structural and functional analyses;
HET: FAD; 2.30A {Thermus thermophilus}
Length = 577
Score = 374 bits (962), Expect = e-123
Identities = 111/327 (33%), Positives = 166/327 (50%), Gaps = 53/327 (16%)
Query: 263 GTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTAT--KDGNHYILNGSKMWISN 319
GT EQK KYLP+LA + ++ L+EPGSGSDA A KT AT +DG HYILNG K WISN
Sbjct: 125 GTEEQKRKYLPKLASGEWIAAYCLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISN 184
Query: 320 ADIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRV 379
A A++F V A VD T F+VER G S G +E K+G+KAS T + ++V+V
Sbjct: 185 AGFAHLFTVFAKVD----GEHFTAFLVERDTPGLSFGPEEKKMGIKASSTRQVILEDVKV 240
Query: 380 PEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQ 439
P EN++ +G+G+KIA LN GR + A G A+ L+ + Y +R QFG I F
Sbjct: 241 PVENVLGEIGKGHKIAFNVLNVGRYKLGAGAVGGAKRALELSAQYATQRVQFGRPIGRFG 300
Query: 440 SVQHQISQAATQVECARLLTYNAARLLEAG--------------QPFIKQASMAKYFASE 485
+Q ++ + A+++ A Y L++ + + +AS+ K SE
Sbjct: 301 LIQQKLGEMASRIYAAESAVYRTVGLIDEALLGKKGPEAVMAGIEEYAVEASIIKVLGSE 360
Query: 486 MAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYY 545
+ ++ + + Q GG G++++YP E+ Y
Sbjct: 361 VLDYVVDEGV-----------------------------QI---HGGYGYSQEYPIERAY 388
Query: 546 RDCKVGTIYEGTSNIQLSTIAKYIAKE 572
RD ++ I+EGT+ I I + +
Sbjct: 389 RDARINRIFEGTNEINRLLIPGMLLRR 415
Score = 303 bits (777), Expect = 8e-96
Identities = 91/243 (37%), Positives = 130/243 (53%), Gaps = 26/243 (10%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTAT--KDGNHYILNGSKMWISNA 58
T EQK KYLP+LA + ++ L+EPGSGSDA A KT AT +DG HYILNG K WISNA
Sbjct: 126 TEEQKRKYLPKLASGEWIAAYCLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNA 185
Query: 59 DIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVP 118
A++F V A VD T F+VER G S G +E K+G+KAS T + ++V+VP
Sbjct: 186 GFAHLFTVFAKVD----GEHFTAFLVERDTPGLSFGPEEKKMGIKASSTRQVILEDVKVP 241
Query: 119 EENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQA 178
EN++ +G+G+KIA LN GR + A G A+ L+ + Y +R Q G I F
Sbjct: 242 VENVLGEIGKGHKIAFNVLNVGRYKLGAGAVGGAKRALELSAQYATQRVQFGRPIGRFGL 301
Query: 179 CNGGSVQHQISQAVTQVECARLLTYNAARLLEAG--------------QPFIKQASMAKY 224
+Q ++ + +++ A Y L++ + + +AS+ K
Sbjct: 302 -----IQQKLGEMASRIYAAESAVYRTVGLIDEALLGKKGPEAVMAGIEEYAVEASIIKV 356
Query: 225 FAS 227
S
Sbjct: 357 LGS 359
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
oxidoreductase; HET: FDA; 2.50A {Mycobacterium
abscessus}
Length = 403
Score = 363 bits (933), Expect = e-121
Identities = 81/310 (26%), Positives = 143/310 (46%), Gaps = 34/310 (10%)
Query: 262 LGTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNA 320
G+ E+Y+ GS ++EPG+GSD ++T A ++G+ Y++NG+K +I++
Sbjct: 126 NGSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFITSG 185
Query: 321 DIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVP 380
A+ GY G++ +++++ GF V ++ +K+G + S T L F +VRVP
Sbjct: 186 VRADFVTTAVRTG-GPGYGGVSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVP 244
Query: 381 EENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQS 440
+N++ G+ R+GIA Q A LD + ER FG + Q
Sbjct: 245 ADNLVGAENSGFLQIMQQFQAERLGIAVQAYATAGRALDLAKSWARERETFGRPLTGRQI 304
Query: 441 VQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMGG 500
++H++++ A QV+ A T + AG+ + + SMAK A ++ + +
Sbjct: 305 IRHKLAEMARQVDVACTYTRAVMQRWLAGEDVVAEVSMAKNTAVYACDYVVNEAV----- 359
Query: 501 LGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNI 560
Q GG+G+ ++ E++YRDC++ I GT+ I
Sbjct: 360 ------------------------QI---FGGMGYMRESEIERHYRDCRILGIGGGTNEI 392
Query: 561 QLSTIAKYIA 570
IAK I
Sbjct: 393 MNEVIAKRIG 402
Score = 297 bits (764), Expect = 5e-96
Identities = 61/227 (26%), Positives = 110/227 (48%), Gaps = 7/227 (3%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 60
+ E+Y+ GS ++EPG+GSD ++T A ++G+ Y++NG+K +I++
Sbjct: 128 SDALIERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFITSGVR 187
Query: 61 ANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEE 120
A+ GY G++ +++++ GF V ++ +K+G + S T L F +VRVP +
Sbjct: 188 ADFVTTAVRTG-GPGYGGVSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVPAD 246
Query: 121 NIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACN 180
N++ G+ R+GIA Q A LD + ER G + Q
Sbjct: 247 NLVGAENSGFLQIMQQFQAERLGIAVQAYATAGRALDLAKSWARERETFGRPLTGRQI-- 304
Query: 181 GGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFAS 227
++H++++ QV+ A T + AG+ + + SMAK A
Sbjct: 305 ---IRHKLAEMARQVDVACTYTRAVMQRWLAGEDVVAEVSMAKNTAV 348
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-structure,
beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus
anthracis}
Length = 597
Score = 368 bits (946), Expect = e-121
Identities = 99/332 (29%), Positives = 153/332 (46%), Gaps = 58/332 (17%)
Query: 263 GTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTA--TKDGNHYILNGSKMWISN 319
G EQK+KYLP LA + ++AL+EPGSGSDA KTTA +G HY+LNG K WI+N
Sbjct: 130 GNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWITN 189
Query: 320 ADIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRV 379
+ A++F+V A +D + FIVE+ G S +E K+G+K S T +L ++ V
Sbjct: 190 SAFADVFIVYAKIDG----EHFSAFIVEKDYAGVSTSPEEKKMGIKCSSTRTLILEDALV 245
Query: 380 PEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQ 439
P+EN++ +G+G+ IA LN GR + G A+ ++ + Y +R QF I F
Sbjct: 246 PKENLLGEIGKGHIIAFNILNIGRYKLGVGTVGSAKRAVEISAQYANQRQQFKQPIARFP 305
Query: 440 SVQHQISQAATQVECARLLTYNAARLLEAG-------------------QPFIKQASMAK 480
+Q +++ A + A Y L E+ + + S+ K
Sbjct: 306 LIQEKLANMAAKTYAAESSVYRTVGLFESRMSTLSEEEVKDGKAVAASIAEYAIECSLNK 365
Query: 481 YFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYP 540
F SE+ + + + GG GF +Y E+ YRD + I R
Sbjct: 366 VFGSEVLDYTVDEGVQIHGGYGFMAEYEIERMYRDSR----INR---------------- 405
Query: 541 QEKYYRDCKVGTIYEGTSNIQLSTIAKYIAKE 572
I+EGT+ I + ++
Sbjct: 406 ------------IFEGTNEINRLIVPGTFLRK 425
Score = 298 bits (765), Expect = 6e-94
Identities = 79/248 (31%), Positives = 121/248 (48%), Gaps = 31/248 (12%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTA--TKDGNHYILNGSKMWISNA 58
EQK+KYLP LA + ++AL+EPGSGSDA KTTA +G HY+LNG K WI+N+
Sbjct: 131 NEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWITNS 190
Query: 59 DIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVP 118
A++F+V A +D + FIVE+ G S +E K+G+K S T +L ++ VP
Sbjct: 191 AFADVFIVYAKIDG----EHFSAFIVEKDYAGVSTSPEEKKMGIKCSSTRTLILEDALVP 246
Query: 119 EENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQA 178
+EN++ +G+G+ IA LN GR + G A+ ++ + Y +R Q I F
Sbjct: 247 KENLLGEIGKGHIIAFNILNIGRYKLGVGTVGSAKRAVEISAQYANQRQQFKQPIARFPL 306
Query: 179 CNGGSVQHQISQAVTQVECARLLTYNAARLLEAG-------------------QPFIKQA 219
+Q +++ + A Y L E+ + +
Sbjct: 307 -----IQEKLANMAAKTYAAESSVYRTVGLFESRMSTLSEEEVKDGKAVAASIAEYAIEC 361
Query: 220 SMAKYFAS 227
S+ K F S
Sbjct: 362 SLNKVFGS 369
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
oxidoreductase; HET: FAO; 1.70A {Mycobacterium
smegmatis} PDB: 3oib_A*
Length = 403
Score = 358 bits (922), Expect = e-119
Identities = 84/311 (27%), Positives = 143/311 (45%), Gaps = 35/311 (11%)
Query: 262 LGTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNA 320
G + Y+ + + G+ A++EPG GSD ++T A DG+HY++NG+K +I++
Sbjct: 123 SGDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVINGAKTYITSG 182
Query: 321 DIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVP 380
A+ + A G G++ +V++ GF V +K +K+G ++S T L + +VRVP
Sbjct: 183 VRADYVVTAARTG-GPGAGGVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVP 241
Query: 381 EENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQS 440
N++ G+ A R+G+A Q AQ CLD T+ + R FG + Q+
Sbjct: 242 VANLVGSENTGFAQIAAAFVAERVGLATQAYAGAQRCLDLTVEWCRNRDTFGRPLISRQA 301
Query: 441 VQHQISQAATQVECARLLTYNAARLLEAGQP-FIKQASMAKYFASEMAGHITRQCIDWMG 499
VQ+ ++ A +++ AR+ T + AG+ I + AK A E + Q +
Sbjct: 302 VQNTLAGMARRIDVARVYTRHVVERQLAGETNLIAEVCFAKNTAVEAGEWVANQAV---- 357
Query: 500 GLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSN 559
Q GG+G+ + E+ YRD ++ I GT+
Sbjct: 358 -------------------------QL---FGGMGYMAESEVERQYRDMRILGIGGGTTE 389
Query: 560 IQLSTIAKYIA 570
I S AK +
Sbjct: 390 ILTSLAAKTLG 400
Score = 293 bits (753), Expect = 2e-94
Identities = 65/228 (28%), Positives = 113/228 (49%), Gaps = 8/228 (3%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 60
+ Y+ + + G+ A++EPG GSD ++T A DG+HY++NG+K +I++
Sbjct: 125 DQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVINGAKTYITSGVR 184
Query: 61 ANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEE 120
A+ + A G G++ +V++ GF V +K +K+G ++S T L + +VRVP
Sbjct: 185 ADYVVTAARTG-GPGAGGVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPVA 243
Query: 121 NIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACN 180
N++ G+ A R+G+A Q AQ CLD T+ + R G + QA
Sbjct: 244 NLVGSENTGFAQIAAAFVAERVGLATQAYAGAQRCLDLTVEWCRNRDTFGRPLISRQA-- 301
Query: 181 GGSVQHQISQAVTQVECARLLTYNAARLLEAGQP-FIKQASMAKYFAS 227
VQ+ ++ +++ AR+ T + AG+ I + AK A
Sbjct: 302 ---VQNTLAGMARRIDVARVYTRHVVERQLAGETNLIAEVCFAKNTAV 346
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA
dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A
{Podospora anserina}
Length = 438
Score = 359 bits (924), Expect = e-119
Identities = 69/343 (20%), Positives = 120/343 (34%), Gaps = 63/343 (18%)
Query: 262 LGTTEQKEKYLPRLAQTDA---GSFALSEPGSGSDAF-----AMKTTATKDGNHYILNGS 313
L Q ++L + S SEPG ++A +TTA +G+ +++NG
Sbjct: 108 LAAGPQHAEFLAPFLSGEGSPLASLVFSEPGGVANALEKGAPGFQTTARLEGDEWVINGE 167
Query: 314 KMWISNADIAN--------IFLVMANVDVSKGYRGITCFIV---------ERSMEGFSVG 356
KMW +N + + A + +G ++ F V
Sbjct: 168 KMWATNCAGWDFKGCDLACVVCRDATTPLEEGQDPENKVMIILVTRADLDRNGEGSFEVL 227
Query: 357 KKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQG 416
+ G + + + NVRVP +N++ G+G K+A G + + + A GL +
Sbjct: 228 RHVATPGHTSVSGPHVRYTNVRVPTKNVLCPAGQGAKVAFGAFDGSAVLVGAMGVGLMRA 287
Query: 417 CLDATIPYTLERSQFGHR-IFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQ----P 471
DA + + E ++ G + + Q+ +S Q E AR LT+ AA +E G
Sbjct: 288 AFDAALKFAKEDNRGGAVPLLERQAFADLLSGVKIQTEAARALTWKAAHAMENGPGDYDA 347
Query: 472 FIKQASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMG 531
+ A AK F SE A I +G
Sbjct: 348 RRELALAAKVFCSEAAVKACTDVI-----------------------------NA---VG 375
Query: 532 GLGFTKDYPQEKYYRDCKVGTIYEGTSN-IQLSTIAKYIAKEY 573
+ P V I++G + I+ + + + K
Sbjct: 376 ISAYDLQRPFSDLLNTAVVLPIFDGGNVGIRRRHLQQLMLKPT 418
Score = 290 bits (745), Expect = 8e-93
Identities = 59/256 (23%), Positives = 100/256 (39%), Gaps = 35/256 (13%)
Query: 2 TTEQKEKYLPRLAQTDA---GSFALSEPGSGSDAF-----AMKTTATKDGNHYILNGSKM 53
Q ++L + S SEPG ++A +TTA +G+ +++NG KM
Sbjct: 110 AGPQHAEFLAPFLSGEGSPLASLVFSEPGGVANALEKGAPGFQTTARLEGDEWVINGEKM 169
Query: 54 WISNADIAN--------IFLVMANVDVSKGYRGITCFIV---------ERSMEGFSVGKK 96
W +N + + A + +G ++ F V +
Sbjct: 170 WATNCAGWDFKGCDLACVVCRDATTPLEEGQDPENKVMIILVTRADLDRNGEGSFEVLRH 229
Query: 97 ENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCL 156
G + + + NVRVP +N++ G+G K+A G + + + A GL +
Sbjct: 230 VATPGHTSVSGPHVRYTNVRVPTKNVLCPAGQGAKVAFGAFDGSAVLVGAMGVGLMRAAF 289
Query: 157 DATIPYTLERSQVGHR-IFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQ-- 213
DA + + E ++ G + + QA +S Q E AR LT+ AA +E G
Sbjct: 290 DAALKFAKEDNRGGAVPLLERQA-----FADLLSGVKIQTEAARALTWKAAHAMENGPGD 344
Query: 214 --PFIKQASMAKYFAS 227
+ A AK F S
Sbjct: 345 YDARRELALAAKVFCS 360
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA
structural genomics, PSI, protein structure initiative;
HET: FAD; 1.80A {Geobacillus kaustophilus}
Length = 385
Score = 357 bits (918), Expect = e-119
Identities = 94/311 (30%), Positives = 156/311 (50%), Gaps = 35/311 (11%)
Query: 262 LGTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNA 320
GT EQK+K+LP+ + + A++EPG+GSD + TTA KDG++YI+NG K +I+N
Sbjct: 105 YGTEEQKQKWLPKCVTGELITAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFITNG 164
Query: 321 DIANIFLVMANVDVSKG--YRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVR 378
A++ +V D +RGI+ +VER GF+ G+K K+G+ A T L F + +
Sbjct: 165 IHADLIVVACKTDPQAKPPHRGISLLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQDAK 224
Query: 379 VPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDF 438
VP N++ G+G+ L Q R+ +A A+ T Y +R+ FG R+ +F
Sbjct: 225 VPAYNLLGEEGKGFYYLMEKLQQERLVVAIAAQTAAEVMFSLTKQYVKQRTAFGKRVSEF 284
Query: 439 QSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWM 498
Q+VQ ++++ AT++ R AG+ + + SMAK++ +EMA + + +
Sbjct: 285 QTVQFRLAEMATEIALGRTFVDRVIEEHMAGKQIVTEVSMAKWWITEMAKRVAAEAMQLH 344
Query: 499 GGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTS 558
GG Y G+ ++Y + YRD V IY GT+
Sbjct: 345 GG------Y--------------------------GYMEEYEIARRYRDIPVSAIYAGTN 372
Query: 559 NIQLSTIAKYI 569
+ + IA+ +
Sbjct: 373 EMMKTIIARQL 383
Score = 294 bits (755), Expect = 6e-95
Identities = 77/243 (31%), Positives = 129/243 (53%), Gaps = 10/243 (4%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 60
T EQK+K+LP+ + + A++EPG+GSD + TTA KDG++YI+NG K +I+N
Sbjct: 107 TEEQKQKWLPKCVTGELITAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFITNGIH 166
Query: 61 ANIFLVMANVDVSKG--YRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVP 118
A++ +V D +RGI+ +VER GF+ G+K K+G+ A T L F + +VP
Sbjct: 167 ADLIVVACKTDPQAKPPHRGISLLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQDAKVP 226
Query: 119 EENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQA 178
N++ G+G+ L Q R+ +A A+ T Y +R+ G R+ +FQ
Sbjct: 227 AYNLLGEEGKGFYYLMEKLQQERLVVAIAAQTAAEVMFSLTKQYVKQRTAFGKRVSEFQT 286
Query: 179 CNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFASVAKLAKETIAP 238
VQ ++++ T++ R AG+ + + SMAK++ + ++AK A
Sbjct: 287 -----VQFRLAEMATEIALGRTFVDRVIEEHMAGKQIVTEVSMAKWWIT--EMAKRVAAE 339
Query: 239 YVQ 241
+Q
Sbjct: 340 AMQ 342
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase
family, kijanose, kijani FAD, flavoprotein; HET: TYD;
2.05A {Actinomadura kijaniata}
Length = 439
Score = 355 bits (912), Expect = e-117
Identities = 51/315 (16%), Positives = 105/315 (33%), Gaps = 52/315 (16%)
Query: 262 LGTTEQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNA 320
+++ + L A+ G A+ T ++L+G K +S A
Sbjct: 116 WRHGDERARTLAERILRGMVAGDAVVCSGIKDHHTAVTTLRPDGAGGWLLSGRKTLVSMA 175
Query: 321 DIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVP 380
+ F++ A D + G + +V R GF+V + LGM+ASGT + FD+ +P
Sbjct: 176 PVGTHFVINARTDGTDGPPRLASPVVTRDTPGFTVLDNWDGLGMRASGTVDIVFDDCPIP 235
Query: 381 EENIISGVGEGYK--IAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDF 438
++++ G + + + G+AQ D + R +
Sbjct: 236 ADHVLMRDPVGARNDAVLAGQTVSSVSVLGVYVGVAQAAYDTAVAALERRPEPPQAA--- 292
Query: 439 QSVQHQISQAATQVECARLLTYNAARLLEA------------GQPFIKQASMAKYFASEM 486
+++ +++ R +A +A G+ ++ AK + +
Sbjct: 293 --ALTLVAEIDSRLYALRATAGSALTAADALSADLSGDMDERGRQMMRHFQCAKLAVNRL 350
Query: 487 AGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYR 546
A I C+ +GG +T +P + R
Sbjct: 351 APEIVSDCL-----------------------------SL---VGGASYTAGHPLARLLR 378
Query: 547 DCKVGTIYEGTSNIQ 561
D + G + + +
Sbjct: 379 DVQAGRFMQPYAYVD 393
Score = 290 bits (744), Expect = 1e-92
Identities = 41/239 (17%), Positives = 85/239 (35%), Gaps = 25/239 (10%)
Query: 4 EQKEKYLPRLAQTD-AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIAN 62
+++ + L A+ G A+ T ++L+G K +S A +
Sbjct: 120 DERARTLAERILRGMVAGDAVVCSGIKDHHTAVTTLRPDGAGGWLLSGRKTLVSMAPVGT 179
Query: 63 IFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENI 122
F++ A D + G + +V R GF+V + LGM+ASGT + FD+ +P +++
Sbjct: 180 HFVINARTDGTDGPPRLASPVVTRDTPGFTVLDNWDGLGMRASGTVDIVFDDCPIPADHV 239
Query: 123 ISGVGEGYK--IAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACN 180
+ G + + + G+AQ D + R +
Sbjct: 240 LMRDPVGARNDAVLAGQTVSSVSVLGVYVGVAQAAYDTAVAALERRPEPPQAA------- 292
Query: 181 GGSVQHQISQAVTQVECARLLTYNAARLLEA------------GQPFIKQASMAKYFAS 227
+++ +++ R +A +A G+ ++ AK +
Sbjct: 293 ---ALTLVAEIDSRLYALRATAGSALTAADALSADLSGDMDERGRQMMRHFQCAKLAVN 348
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA
dehydrogenase, long cell EDGE, FAD, inhibitor,
flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium
oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A*
2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*
Length = 439
Score = 342 bits (880), Expect = e-113
Identities = 54/347 (15%), Positives = 117/347 (33%), Gaps = 68/347 (19%)
Query: 263 GTTEQKEKYLPRLAQTDA---GSFALSEPGSGSD-----AFAMKTTATKDGNHYILNGSK 314
+ +EK+L + S SEP ++ ++TTA K GN ++++G K
Sbjct: 108 DSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEK 167
Query: 315 MWISNA-----DIANIFLVMANVD---------VSKGYRGITCFIVERSMEG------FS 354
+W SN+ A++ V+ V I +V R +
Sbjct: 168 LWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQ 227
Query: 355 VGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAA-GFLNQGRIGIAAQMTGL 413
+ + G + F VP EN++ G + + A G
Sbjct: 228 ILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGT 287
Query: 414 AQGCLDATIPYTLERSQFGHR-IFDFQSVQHQISQAATQVECARLLTYNAARLLEAG--- 469
A+ + + + ++ G + I + QSV ++ ++E +RLL + A LE
Sbjct: 288 ARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALE 347
Query: 470 -QPFIKQASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCID 528
+ ++ A K + +++A + +
Sbjct: 348 WKVKLEMAMQTKIYTTDVAVECVIDAM-----------------------------KA-- 376
Query: 529 WMGGLGFTKDYPQEKYYRDCKVGTIYEGTSN-IQLSTIAKY-IAKEY 573
+G + KD + + +++G + ++ + + ++Y
Sbjct: 377 -VGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMALEDY 422
Score = 279 bits (717), Expect = 1e-88
Identities = 47/260 (18%), Positives = 93/260 (35%), Gaps = 39/260 (15%)
Query: 2 TTEQKEKYLPRLAQTDA---GSFALSEPGSGSD-----AFAMKTTATKDGNHYILNGSKM 53
+ +EK+L + S SEP ++ ++TTA K GN ++++G K+
Sbjct: 109 SPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKL 168
Query: 54 WISNA-----DIANIFLVMANVD---------VSKGYRGITCFIVERSMEG------FSV 93
W SN+ A++ V+ V I +V R + +
Sbjct: 169 WPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQI 228
Query: 94 GKKENKLGMKASGTCSLHFDNVRVPEENIISGVGEGYKIAA-GFLNQGRIGIAAQMTGLA 152
+ G + F VP EN++ G + + A G A
Sbjct: 229 LGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTA 288
Query: 153 QGCLDATIPYTLERSQVGHR-IFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEA 211
+ + + + ++ G + I + Q+ V ++ ++E +RLL + A LE
Sbjct: 289 RAAFEEALVFAKSDTRGGSKHIIEHQS-----VADKLIDCKIRLETSRLLVWKAVTTLED 343
Query: 212 G----QPFIKQASMAKYFAS 227
+ ++ A K + +
Sbjct: 344 EALEWKVKLEMAMQTKIYTT 363
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas
oxidoreductase; 3.15A {Micromonospora carbonacea}
Length = 395
Score = 339 bits (873), Expect = e-112
Identities = 62/315 (19%), Positives = 105/315 (33%), Gaps = 59/315 (18%)
Query: 263 GTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDG-NHYILNGSKMWISNA 320
E+ L +A+ +A AL + + T DG ++L+G K+ +S A
Sbjct: 111 PVRAMAERLLRAMAEGEAAVCGALKDAP------GVVTELHSDGAGGWLLSGRKVLVSMA 164
Query: 321 DIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVP 380
IA F V A G + +V R G +V + LGM+ASGT + FD V
Sbjct: 165 PIATHFFVHAQRRDDDGSVFLAVPVVHRDAPGLTVLDNWDGLGMRASGTLEVVFDRCPVR 224
Query: 381 EENIISG--VGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDF 438
+ ++ VG I + G+AQ D + + R
Sbjct: 225 ADELLERGPVGARRDAVLAGQTVSSITMLGIYAGIAQAARDIAVGFCAGRGGEP-----R 279
Query: 439 QSVQHQISQAATQVECARLLTYNAARLLEA------------GQPFIKQASMAKYFASEM 486
+ ++ T++ R A +A G+ + AK +E+
Sbjct: 280 AGARALVAGLDTRLYALRTTVGAALTNADAASVDLSGDPDERGRRMMTPFQYAKMTVNEL 339
Query: 487 AGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYR 546
A + C+ +GGL +T +P + YR
Sbjct: 340 APAVVDDCL-----------------------------SL---VGGLAYTAGHPLSRLYR 367
Query: 547 DCKVGTIYEGTSNIQ 561
D + G + S +
Sbjct: 368 DVRAGGFMQPYSYVD 382
Score = 277 bits (712), Expect = 2e-88
Identities = 50/242 (20%), Positives = 83/242 (34%), Gaps = 32/242 (13%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDG-NHYILNGSKMWISNAD 59
E+ L +A+ +A AL + + T DG ++L+G K+ +S A
Sbjct: 112 VRAMAERLLRAMAEGEAAVCGALKDAP------GVVTELHSDGAGGWLLSGRKVLVSMAP 165
Query: 60 IANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPE 119
IA F V A G + +V R G +V + LGM+ASGT + FD V
Sbjct: 166 IATHFFVHAQRRDDDGSVFLAVPVVHRDAPGLTVLDNWDGLGMRASGTLEVVFDRCPVRA 225
Query: 120 ENIISG--VGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQ 177
+ ++ VG I + G+AQ D + + R +
Sbjct: 226 DELLERGPVGARRDAVLAGQTVSSITMLGIYAGIAQAARDIAVGFCAGRGGEP--RAGAR 283
Query: 178 ACNGGSVQHQISQAVTQVECARLLTYNAARLLEA------------GQPFIKQASMAKYF 225
A ++ T++ R A +A G+ + AK
Sbjct: 284 A--------LVAGLDTRLYALRTTVGAALTNADAASVDLSGDPDERGRRMMTPFQYAKMT 335
Query: 226 AS 227
+
Sbjct: 336 VN 337
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening,
optimization, protein crystallization, structural
genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei
1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A
Length = 396
Score = 338 bits (870), Expect = e-112
Identities = 94/308 (30%), Positives = 142/308 (46%), Gaps = 35/308 (11%)
Query: 263 GTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 321
G+ QKEKYLP+LA + G F L+EP GSD +M T A K Y L+GSKMWI+N+
Sbjct: 116 GSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSP 175
Query: 322 IANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPE 381
IA++F+V A +D G I FI+E+ +G S K+G++AS T + D VPE
Sbjct: 176 IADVFVVWAKLD-EDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPE 234
Query: 382 ENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSV 441
ENI+ V +G + LN R GIA G A+ C Y L+R QFG + Q +
Sbjct: 235 ENILPHV-KGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLI 293
Query: 442 QHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMGGL 501
Q +++ T++ R+ + G ++ S+ K +
Sbjct: 294 QKKLADMQTEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNS------------------ 335
Query: 502 GFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNIQ 561
C A I R D +GG G + ++ ++ + +V YEGT +I
Sbjct: 336 --------------CGKALDIARLARDMLGGNGISDEFGVARHLVNLEVVNTYEGTHDIH 381
Query: 562 LSTIAKYI 569
+ +
Sbjct: 382 ALILGRAQ 389
Score = 285 bits (733), Expect = 2e-91
Identities = 78/227 (34%), Positives = 115/227 (50%), Gaps = 8/227 (3%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 60
+ QKEKYLP+LA + G F L+EP GSD +M T A K Y L+GSKMWI+N+ I
Sbjct: 117 SDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPI 176
Query: 61 ANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEE 120
A++F+V A +D G I FI+E+ +G S K+G++AS T + D VPEE
Sbjct: 177 ADVFVVWAKLD-EDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEE 235
Query: 121 NIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACN 180
NI+ V +G + LN R GIA G A+ C Y L+R Q G + Q
Sbjct: 236 NILPHV-KGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQL-- 292
Query: 181 GGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFAS 227
+Q +++ T++ R+ + G ++ S+ K +
Sbjct: 293 ---IQKKLADMQTEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSC 336
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase,
mycobacerium smegmatis, S genomics; HET: FDA; 1.45A
{Mycobacterium smegmatis}
Length = 399
Score = 332 bits (854), Expect = e-109
Identities = 95/308 (30%), Positives = 144/308 (46%), Gaps = 39/308 (12%)
Query: 263 GTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 321
G+ EQK ++LPRLA DA G F L+EP GS+ M+T A +DG+ +ILNG+KMWI+N +
Sbjct: 122 GSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMWITNGN 181
Query: 322 IANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPE 381
+A++ V A D GI F+V GF+ + KL ++AS T L DNVR+P
Sbjct: 182 LADVATVWAQTD-----DGIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPA 236
Query: 382 ENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSV 441
+ EG LN+ R GI G A+ L+ TI YT R F + ++Q
Sbjct: 237 SAQLPLA-EGLSAPLSCLNEARFGIVFGALGAARDSLETTIAYTQSREVFDKPLSNYQLT 295
Query: 442 QHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMGGL 501
Q +++ ++ LL + R+ +A +Q S+ K
Sbjct: 296 QEKLANMTVELGKGMLLAIHLGRIKDAEGVRPEQISLGKLNN------------------ 337
Query: 502 GFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNIQ 561
+ A I R+C +GG G T +Y ++ + + YEGTS +
Sbjct: 338 --------------VREAIAIARECRTLLGGSGITLEYSPLRHANNLESVLTYEGTSEMH 383
Query: 562 LSTIAKYI 569
L +I K +
Sbjct: 384 LLSIGKAL 391
Score = 280 bits (718), Expect = 3e-89
Identities = 76/227 (33%), Positives = 114/227 (50%), Gaps = 12/227 (5%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 60
+ EQK ++LPRLA DA G F L+EP GS+ M+T A +DG+ +ILNG+KMWI+N ++
Sbjct: 123 SEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMWITNGNL 182
Query: 61 ANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEE 120
A++ V A D GI F+V GF+ + KL ++AS T L DNVR+P
Sbjct: 183 ADVATVWAQTD-----DGIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPAS 237
Query: 121 NIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACN 180
+ EG LN+ R GI G A+ L+ TI YT R + ++Q
Sbjct: 238 AQLPLA-EGLSAPLSCLNEARFGIVFGALGAARDSLETTIAYTQSREVFDKPLSNYQL-- 294
Query: 181 GGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFAS 227
Q +++ ++ LL + R+ +A +Q S+ K
Sbjct: 295 ---TQEKLANMTVELGKGMLLAIHLGRIKDAEGVRPEQISLGKLNNV 338
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; HET: FDA; 1.70A
{Mycobacterium smegmatis}
Length = 403
Score = 329 bits (846), Expect = e-108
Identities = 87/308 (28%), Positives = 136/308 (44%), Gaps = 39/308 (12%)
Query: 263 GTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 321
G+ EQK+++LP +A G F L+EP GSD M+T AT+ G+ +IL G+KMWI+N
Sbjct: 127 GSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILTGTKMWITNGS 186
Query: 322 IANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPE 381
+A++ +V A D GI F+V GF+ ++K+ ++AS T L D VR+P+
Sbjct: 187 VADVAVVWARTD-----EGIRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVRLPD 241
Query: 382 ENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSV 441
+ G LN+ R GI G A+ CL+ + Y R QF I FQ
Sbjct: 242 SARLPGA-TSLGAPLRCLNEARFGIVFGALGAARDCLETALAYACSREQFDRPIGGFQLT 300
Query: 442 QHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMGGL 501
Q +++ + LL + R +AG+ +Q S+ K
Sbjct: 301 QQKLADMTLEYGKGFLLALHLGRQKDAGELAPEQVSLGKLNN------------------ 342
Query: 502 GFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNIQ 561
+ A I R +G G T +YP ++ + + YEGTS +
Sbjct: 343 --------------VREAIEIARTARTVLGASGITGEYPVMRHANNLESVLTYEGTSEMH 388
Query: 562 LSTIAKYI 569
I + +
Sbjct: 389 TLIIGQAL 396
Score = 277 bits (711), Expect = 3e-88
Identities = 73/239 (30%), Positives = 115/239 (48%), Gaps = 17/239 (7%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 60
+ EQK+++LP +A G F L+EP GSD M+T AT+ G+ +IL G+KMWI+N +
Sbjct: 128 SDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILTGTKMWITNGSV 187
Query: 61 ANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEE 120
A++ +V A D GI F+V GF+ ++K+ ++AS T L D VR+P+
Sbjct: 188 ADVAVVWARTD-----EGIRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVRLPDS 242
Query: 121 NIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACN 180
+ G LN+ R GI G A+ CL+ + Y R Q I FQ
Sbjct: 243 ARLPGA-TSLGAPLRCLNEARFGIVFGALGAARDCLETALAYACSREQFDRPIGGFQL-- 299
Query: 181 GGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFAS-----VAKLAKE 234
Q +++ + LL + R +AG+ +Q S+ K +A+ A+
Sbjct: 300 ---TQQKLADMTLEYGKGFLLALHLGRQKDAGELAPEQVSLGKLNNVREAIEIARTART 355
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin,
peroxisome, glyoxysome, fatty acid metabo lipid
metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A
{Arabidopsis thaliana} PDB: 2ix6_A*
Length = 436
Score = 329 bits (846), Expect = e-108
Identities = 89/308 (28%), Positives = 137/308 (44%), Gaps = 37/308 (12%)
Query: 263 GTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 321
G+ QKEKYLP LAQ + +AL+EP +GSDA + TTATK + +NG K WI N+
Sbjct: 151 GSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNST 210
Query: 322 IANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPE 381
A++ ++ A + I FIV++ G K NK+G++ + NV VP+
Sbjct: 211 FADLLIIFA---RNTTTNQINGFIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNVFVPD 267
Query: 382 ENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQSV 441
E+ + GV ++ + L R+ +A Q G++ G D Y ER QFG + FQ
Sbjct: 268 EDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAFQLN 326
Query: 442 QHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMGGL 501
Q ++ Q V+ L+ + +L E GQ QAS+ K + S A
Sbjct: 327 QQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQASLGKAWISSKA-------------- 372
Query: 502 GFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNIQ 561
R+ + +GG G D+ K + D + YEGT +I
Sbjct: 373 ------------RE------TASLGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDIN 414
Query: 562 LSTIAKYI 569
+ +
Sbjct: 415 TLVTGREV 422
Score = 278 bits (714), Expect = 3e-88
Identities = 74/227 (32%), Positives = 114/227 (50%), Gaps = 10/227 (4%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 60
+ QKEKYLP LAQ + +AL+EP +GSDA + TTATK + +NG K WI N+
Sbjct: 152 SEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNSTF 211
Query: 61 ANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEE 120
A++ ++ A + I FIV++ G K NK+G++ + NV VP+E
Sbjct: 212 ADLLIIFA---RNTTTNQINGFIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDE 268
Query: 121 NIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQACN 180
+ + GV ++ + L R+ +A Q G++ G D Y ER Q G + FQ
Sbjct: 269 DRLPGV-NSFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAFQL-- 325
Query: 181 GGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFAS 227
Q ++ Q + V+ L+ + +L E GQ QAS+ K + S
Sbjct: 326 ---NQQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQASLGKAWIS 369
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD,
STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus
thermophilus}
Length = 385
Score = 321 bits (825), Expect = e-105
Identities = 84/309 (27%), Positives = 139/309 (44%), Gaps = 39/309 (12%)
Query: 263 GTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFA-MKTTATKDGNHYILNGSKMWISNA 320
G+ EQK ++LP+LA+ + G F L+EP GSD + MKT A ++G+ ++LNG+KMWI+N
Sbjct: 108 GSEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWITNG 167
Query: 321 DIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVP 380
++A++ ++ A + + + F+V GF + + K+ ++AS T L + VRVP
Sbjct: 168 NLAHLAVIWAKDEGGE----VLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVP 223
Query: 381 EENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQS 440
E + G K L Q R GIA G + + + + RS FG + Q
Sbjct: 224 ESLRLPKA-LGLKAPLSCLTQARFGIAWGAMGALEAVYEEAVAFAKSRSTFGEPLAKKQL 282
Query: 441 VQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMGG 500
VQ ++++ LL + ARL + G+ Q S+AK
Sbjct: 283 VQAKLAEMLAWHTEGLLLAWRLARLKDEGKLTPAQVSLAKRQN----------------- 325
Query: 501 LGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNI 560
A R D +GG G T +Y ++ + + YEGT ++
Sbjct: 326 ---------------VWKALQAARMARDILGGSGITLEYHAIRHMLNLETVYTYEGTHDV 370
Query: 561 QLSTIAKYI 569
+ + I
Sbjct: 371 HTLVLGREI 379
Score = 270 bits (694), Expect = 7e-86
Identities = 69/228 (30%), Positives = 115/228 (50%), Gaps = 12/228 (5%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFA-MKTTATKDGNHYILNGSKMWISNAD 59
+ EQK ++LP+LA+ + G F L+EP GSD + MKT A ++G+ ++LNG+KMWI+N +
Sbjct: 109 SEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWITNGN 168
Query: 60 IANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPE 119
+A++ ++ A + + + F+V GF + + K+ ++AS T L + VRVPE
Sbjct: 169 LAHLAVIWAKDEGGE----VLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVPE 224
Query: 120 ENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQAC 179
+ G K L Q R GIA G + + + + RS G + Q
Sbjct: 225 SLRLPKA-LGLKAPLSCLTQARFGIAWGAMGALEAVYEEAVAFAKSRSTFGEPLAKKQL- 282
Query: 180 NGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFAS 227
VQ ++++ + LL + ARL + G+ Q S+AK
Sbjct: 283 ----VQAKLAEMLAWHTEGLLLAWRLARLKDEGKLTPAQVSLAKRQNV 326
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase,
decarboxylation, flavin protein, oxidoreductase; HET:
FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB:
2r0n_A* 1sir_A* 2r0m_A*
Length = 392
Score = 305 bits (783), Expect = 4e-99
Identities = 90/310 (29%), Positives = 142/310 (45%), Gaps = 40/310 (12%)
Query: 263 GTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTA--TKDGNHYILNGSKMWISN 319
G+ EQ++KYLP+LA+ + G F L+EP SGSD +M+T A Y LNG+K WI+N
Sbjct: 110 GSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITN 169
Query: 320 ADIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRV 379
+ +A++F+V A + I F++E+ M G S + + K ++AS T + D V V
Sbjct: 170 SPMADLFVVWARCEDGC----IRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEV 225
Query: 380 PEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFDFQ 439
PEEN++ G G LN R GIA + G ++ CL Y L+R QFG + Q
Sbjct: 226 PEENVLPGA-SSLGGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQ 284
Query: 440 SVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMG 499
+Q +++ T++ RL + + + S+ K
Sbjct: 285 LIQKKLADMLTEITLGLHACLQLGRLKDQDKAAPEMVSLLKRNN---------------- 328
Query: 500 GLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSN 559
C A I RQ D +GG G + +Y ++ + + YEGT +
Sbjct: 329 ----------------CGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHD 372
Query: 560 IQLSTIAKYI 569
I + + I
Sbjct: 373 IHALILGRAI 382
Score = 258 bits (661), Expect = 6e-81
Identities = 74/241 (30%), Positives = 121/241 (50%), Gaps = 18/241 (7%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTA--TKDGNHYILNGSKMWISNA 58
+ EQ++KYLP+LA+ + G F L+EP SGSD +M+T A Y LNG+K WI+N+
Sbjct: 111 SEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNS 170
Query: 59 DIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVP 118
+A++F+V A + I F++E+ M G S + + K ++AS T + D V VP
Sbjct: 171 PMADLFVVWARCEDGC----IRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVP 226
Query: 119 EENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGHRIFDFQA 178
EEN++ G G LN R GIA + G ++ CL Y L+R Q G + Q
Sbjct: 227 EENVLPGA-SSLGGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQL 285
Query: 179 CNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQPFIKQASMAKYFAS-----VAKLAK 233
+Q +++ +T++ RL + + + S+ K +A+ A+
Sbjct: 286 -----IQKKLADMLTEITLGLHACLQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQAR 340
Query: 234 E 234
+
Sbjct: 341 D 341
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle,
oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus}
SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
Length = 661
Score = 227 bits (579), Expect = 3e-66
Identities = 64/361 (17%), Positives = 111/361 (30%), Gaps = 78/361 (21%)
Query: 261 GLGTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTAT--KDGNHYILNG----- 312
T EQ+E++ + G++A +E G G+ ++TTAT +ILN
Sbjct: 113 HQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTS 172
Query: 313 SKMWISN-ADIANIFLVMANVDVSKGYRGITCFIV-------ERSMEGFSVGKKENKLGM 364
K W +N +V+A + G+ F+V + + G +VG K G
Sbjct: 173 IKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFGY 232
Query: 365 KASGTCSLHFDNVRVPEENIISGVGE-----------GYKIAAGFLNQGRIGIAAQMTGL 413
+ L DN R+P EN++ + K+ G + R +
Sbjct: 233 EEMDNGYLKMDNYRIPRENMLMKYAQVKPDGTYVKPLSNKLTYGTMVFVRSFLVGNAAQS 292
Query: 414 AQGCLDATIPYTLERSQFGHR-------IFDFQSVQHQISQAATQVECARLLTYNAARLL 466
I Y+ R Q + I DFQ+ Q+++ +
Sbjct: 293 LSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQQYKLFPLLATAYAFHFVGRYMKETY 352
Query: 467 EAGQPFIKQ------------ASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYR 514
I Q + K F + A +C
Sbjct: 353 LRINESIGQGDLSELPELHALTAGLKAFTTWTANAGIEEC-------------------- 392
Query: 515 DCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNIQLSTIAKYIAKEYT 574
R GG G++ Y +EG + + + A+++ K Y
Sbjct: 393 ---------RMA---CGGHGYSHSSGIPNIYVTFTPACTFEGENTVMMLQTARFLMKIYD 440
Query: 575 S 575
Sbjct: 441 Q 441
Score = 176 bits (447), Expect = 7e-48
Identities = 52/272 (19%), Positives = 90/272 (33%), Gaps = 51/272 (18%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTAT--KDGNHYILNG-----SKM 53
T EQ+E++ + G++A +E G G+ ++TTAT +ILN K
Sbjct: 116 TAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKW 175
Query: 54 WISN-ADIANIFLVMANVDVSKGYRGITCFIV-------ERSMEGFSVGKKENKLGMKAS 105
W +N +V+A + G+ F+V + + G +VG K G +
Sbjct: 176 WPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFGYEEM 235
Query: 106 GTCSLHFDNVRVPEENIISGVGE-----------GYKIAAGFLNQGRIGIAAQMTGLAQG 154
L DN R+P EN++ + K+ G + R +
Sbjct: 236 DNGYLKMDNYRIPRENMLMKYAQVKPDGTYVKPLSNKLTYGTMVFVRSFLVGNAAQSLSK 295
Query: 155 CLDATIPYTLERSQVGHR-------IFDFQACNGGSVQHQISQAVTQVECARLLTYNAAR 207
I Y+ R Q + I DFQ + Q+++ + +
Sbjct: 296 ACTIAIRYSAVRRQSEIKQSEPEPQILDFQ-----TQQYKLFPLLATAYAFHFVGRYMKE 350
Query: 208 LLEAGQPFIKQ------------ASMAKYFAS 227
I Q + K F +
Sbjct: 351 TYLRINESIGQGDLSELPELHALTAGLKAFTT 382
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD
cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP:
a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*
Length = 659
Score = 213 bits (544), Expect = 2e-61
Identities = 61/365 (16%), Positives = 119/365 (32%), Gaps = 82/365 (22%)
Query: 261 GLGTTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKD--GNHYILNGSKMWI 317
G GT EQ++K+L + G +A +E G GS+ ++TTAT D + ++++
Sbjct: 112 GQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTA 171
Query: 318 SN------ADIANIFLVMANVDVSKGYRGITCFIVE-------RSMEGFSVGKKENKLGM 364
S ++ +V A + + GI FIV+ + +VG K+G
Sbjct: 172 SKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGN 231
Query: 365 KA---SGTCSLHFDNVRVPEENIISGVGE------------GYKIAAGFLNQGRIGIAAQ 409
A L FD+VR+P + ++ + + ++ G + R I A
Sbjct: 232 GAYNSMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVPKQLVYGTMVYVRQTIVAD 291
Query: 410 MTGLAQGCLDATIPYTLERSQFGHR-------IFDFQSVQHQISQAATQVECARLLTYNA 462
+ + Y+ R QFG + D+++ Q+++ R +
Sbjct: 292 ASNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRLFPLLASAYAFRFVGEWL 351
Query: 463 ARLLEAGQPFIKQ------------ASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQE 510
L + + K + +C
Sbjct: 352 KWLYTDVTERLAASDFATLPEAHACTAGLKSLTTTATADGIEEC---------------- 395
Query: 511 KFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDCKVGTIYEGTSNIQLSTIAKYIA 570
R+ GG G+ + + YEG + + +A+++
Sbjct: 396 -------------RKL---CGGHGYLWCSGLPELFAVYVPACTYEGDNVVLQLQVARFLM 439
Query: 571 KEYTS 575
K
Sbjct: 440 KTVAQ 444
Score = 165 bits (418), Expect = 6e-44
Identities = 48/276 (17%), Positives = 96/276 (34%), Gaps = 55/276 (19%)
Query: 2 TTEQKEKYLPRLAQTDA-GSFALSEPGSGSDAFAMKTTATKD--GNHYILNGSKMWISN- 57
T EQ++K+L + G +A +E G GS+ ++TTAT D + ++++ S
Sbjct: 115 TEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKW 174
Query: 58 -----ADIANIFLVMANVDVSKGYRGITCFIVE-------RSMEGFSVGKKENKLGMKA- 104
++ +V A + + GI FIV+ + +VG K+G A
Sbjct: 175 WPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAY 234
Query: 105 --SGTCSLHFDNVRVPEENIISGVGE------------GYKIAAGFLNQGRIGIAAQMTG 150
L FD+VR+P + ++ + + ++ G + R I A +
Sbjct: 235 NSMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVPKQLVYGTMVYVRQTIVADASN 294
Query: 151 LAQGCLDATIPYTLERSQVGHR-------IFDFQACNGGSVQHQISQAVTQVECARLLTY 203
+ Y+ R Q G + D++ + Q+++ + R +
Sbjct: 295 ALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYK-----TQQNRLFPLLASAYAFRFVGE 349
Query: 204 NAARLLEAGQPFIKQ------------ASMAKYFAS 227
L + + K +
Sbjct: 350 WLKWLYTDVTERLAASDFATLPEAHACTAGLKSLTT 385
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein,
oxidoreducta; HET: FAD; 2.80A {Homo sapiens}
Length = 428
Score = 199 bits (509), Expect = 3e-58
Identities = 76/265 (28%), Positives = 127/265 (47%), Gaps = 13/265 (4%)
Query: 263 GTTEQKEKYLPRLAQTDAGS-FALSEPG-SGSDAFAMKTTATKDGNHYILNGSKMWISNA 320
G+ EQK+++L L Q + S F ++EP + SDA ++ + +D + Y++NG K W S A
Sbjct: 131 GSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDEDSYVINGKKWWSSGA 190
Query: 321 DIAN--IFLVMA---NVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKAS---GTCSL 372
I +V+ N +S+ ++ + +V + G + + + G + G +
Sbjct: 191 GNPKCKIAIVLGRTQNTSLSR-HKQHSMILVPMNTPGVKIIRPLSVFGYTDNFHGGHFEI 249
Query: 373 HFDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQFG 432
HF+ VRVP N+I G G G++I+ G L GRI + GLA+ L +R F
Sbjct: 250 HFNQVRVPATNLILGEGRGFEISQGRLGPGRIHHCMRTVGLAERALQIMCERATQRIAFK 309
Query: 433 HRIFDFQSVQHQISQAATQVECARLLTYNAARLLE--AGQPFIKQASMAKYFASEMAGHI 490
+++ + V H I+++ +E RLLT AA ++ K+ +M K A I
Sbjct: 310 KKLYAHEVVAHWIAESRIAIEKIRLLTLKAAHSMDTLGSAGAKKEIAMIKVAAPRAVSKI 369
Query: 491 TRQCIDWMGGLGFTKDYPQEKFYRD 515
I GG G ++DYP Y
Sbjct: 370 VDWAIQVCGGAGVSQDYPLANMYAI 394
Score = 158 bits (403), Expect = 4e-43
Identities = 65/238 (27%), Positives = 114/238 (47%), Gaps = 18/238 (7%)
Query: 2 TTEQKEKYLPRLAQTDAGS-FALSEPG-SGSDAFAMKTTATKDGNHYILNGSKMWISNAD 59
+ EQK+++L L Q + S F ++EP + SDA ++ + +D + Y++NG K W S A
Sbjct: 132 SEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDEDSYVINGKKWWSSGAG 191
Query: 60 IAN--IFLVMA---NVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKAS---GTCSLH 111
I +V+ N +S+ ++ + +V + G + + + G + G +H
Sbjct: 192 NPKCKIAIVLGRTQNTSLSR-HKQHSMILVPMNTPGVKIIRPLSVFGYTDNFHGGHFEIH 250
Query: 112 FDNVRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQVGH 171
F+ VRVP N+I G G G++I+ G L GRI + GLA+ L +R
Sbjct: 251 FNQVRVPATNLILGEGRGFEISQGRLGPGRIHHCMRTVGLAERALQIMCERATQRIAFKK 310
Query: 172 RIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLE--AGQPFIKQASMAKYFAS 227
+++ + V H I+++ +E RLLT AA ++ K+ +M K A
Sbjct: 311 KLYAHE-----VVAHWIAESRIAIEKIRLLTLKAAHSMDTLGSAGAKKEIAMIKVAAP 363
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme
hydroxylase, oxidoreductase; 2.3A {Acinetobacter
baumannii} PDB: 2jbs_A* 2jbt_A*
Length = 422
Score = 179 bits (457), Expect = 6e-51
Identities = 50/272 (18%), Positives = 91/272 (33%), Gaps = 27/272 (9%)
Query: 271 YLPRLAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMA 330
+ Q + + + S + A + ILNG W S D A +V
Sbjct: 126 MFSKQLQDEI--WLKDPDATASSSIAPFGKVEEVEGGIILNGDYGWSSGCDHAEYAIVGF 183
Query: 331 NVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIIS--GV 388
N + G + + ++ RS + + +K+SG+ L NV +PE I +
Sbjct: 184 NRFDADGNKIYSFGVIPRS--DYEIVDNWYAQAIKSSGSKMLKLVNVFIPEYRISKAKDM 241
Query: 389 GEGYKIAAGFLNQGRI-----------GIAAQMTGLAQGCLDATIPYTLERSQ--FGHRI 435
EG G +I G +A G+A+ ++A R + G +
Sbjct: 242 MEGKSAGFGLYPDSKIFYTPYRPYFASGFSAVSLGIAERMIEAFKEKQRNRVRAYTGANV 301
Query: 436 FDFQSVQHQISQAATQVECARLLTYNAARLLE----AGQPF----IKQASMAKYFASEMA 487
+I+++ QV AR L Q + + +A +M
Sbjct: 302 GLATPALMRIAESTHQVAAARALLEKTWEDHRIHGLNHQYPNKETLAFWRTNQAYAVKMC 361
Query: 488 GHITRQCIDWMGGLGFTKDYPQEKFYRDCKMA 519
+ + G F + ++ +RD M
Sbjct: 362 IEAVDRLMAAAGATSFMDNSELQRLFRDAHMT 393
Score = 145 bits (367), Expect = 2e-38
Identities = 44/242 (18%), Positives = 78/242 (32%), Gaps = 32/242 (13%)
Query: 9 YLPRLAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMA 68
+ Q + + + S + A + ILNG W S D A +V
Sbjct: 126 MFSKQLQDEI--WLKDPDATASSSIAPFGKVEEVEGGIILNGDYGWSSGCDHAEYAIVGF 183
Query: 69 NVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIIS--GV 126
N + G + + ++ RS + + +K+SG+ L NV +PE I +
Sbjct: 184 NRFDADGNKIYSFGVIPRS--DYEIVDNWYAQAIKSSGSKMLKLVNVFIPEYRISKAKDM 241
Query: 127 GEGYKIAAGFLNQGRI-----------GIAAQMTGLAQGCLDATIPYTLERSQV--GHRI 173
EG G +I G +A G+A+ ++A R + G +
Sbjct: 242 MEGKSAGFGLYPDSKIFYTPYRPYFASGFSAVSLGIAERMIEAFKEKQRNRVRAYTGANV 301
Query: 174 FDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLE----AGQPF----IKQASMAKYF 225
+I+++ QV AR L Q + + +
Sbjct: 302 GLATP-----ALMRIAESTHQVAAARALLEKTWEDHRIHGLNHQYPNKETLAFWRTNQAY 356
Query: 226 AS 227
A
Sbjct: 357 AV 358
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein,
oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB:
3u33_A*
Length = 541
Score = 161 bits (408), Expect = 4e-43
Identities = 63/313 (20%), Positives = 115/313 (36%), Gaps = 52/313 (16%)
Query: 263 GTTEQKEKYLPRLAQTDAGSFALS-----EPGSGSDAFAMKTTATKDGN-HYILNGSKMW 316
T ++Y L L E GSD + T A + + Y L G K +
Sbjct: 157 TTPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWF 216
Query: 317 ISNADIANIFLVMANVDVSKGYRGITCFIVERSME-----GFSVGKKENKLGMKASGTCS 371
S ++ LV+A G++CF V R + + + ++KLG +++ +C
Sbjct: 217 FSVPQ-SDAHLVLAQTA-----GGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCE 270
Query: 372 LHFDN---VRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLER 428
+ F + + E GEG ++ R A + + I + +R
Sbjct: 271 VEFQDAIGWLLGLE------GEGIRLILKMGGMTRFDCALGSHAMMRRAFSLAIYHAHQR 324
Query: 429 SQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQPFIKQASMAKYFASEMAG 488
FG+ + ++H +S+ A Q+E L + AR + A
Sbjct: 325 HVFGNPLIQQPLMRHVLSRMALQLEGQTALLFRLARAWDRR-------------ADAKEA 371
Query: 489 HITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRDC 548
R P K + CK + ++ +GG+G+ ++ + YR+
Sbjct: 372 LWARLFT------------PAAK-FVICKRGMPFVAEAMEVLGGIGYCEESELPRLYREM 418
Query: 549 KVGTIYEGTSNIQ 561
V +I+EG+ NI
Sbjct: 419 PVNSIWEGSGNIM 431
Score = 112 bits (281), Expect = 2e-26
Identities = 49/243 (20%), Positives = 88/243 (36%), Gaps = 34/243 (13%)
Query: 4 EQKEKYLPRLAQTDAGSFALS-----EPGSGSDAFAMKTTATKDGN-HYILNGSKMWISN 57
++Y L L E GSD + T A + + Y L G K + S
Sbjct: 160 LLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWFFSV 219
Query: 58 ADIANIFLVMANVDVSKGYRGITCFIVERSME-----GFSVGKKENKLGMKASGTCSLHF 112
++ LV+A G++CF V R + + + ++KLG +++ +C + F
Sbjct: 220 PQ-SDAHLVLAQTA-----GGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCEVEF 273
Query: 113 DN---VRVPEENIISGVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTLERSQV 169
+ + E GEG ++ R A + + I + +R
Sbjct: 274 QDAIGWLLGLE------GEGIRLILKMGGMTRFDCALGSHAMMRRAFSLAIYHAHQRHVF 327
Query: 170 GHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLL-EAGQPFIKQASMAKYFASV 228
G+ + ++H +S+ Q+E L + AR K+A A+ F
Sbjct: 328 GNPLIQQPL-----MRHVLSRMALQLEGQTALLFRLARAWDRRADA--KEALWARLFTPA 380
Query: 229 AKL 231
AK
Sbjct: 381 AKF 383
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural
genomics protein structure initiative, midwest center
for structural genomics, MCSG; HET: 1PS; 1.65A
{Rhodococcus SP} PDB: 3aff_A 3afe_A
Length = 394
Score = 154 bits (392), Expect = 5e-42
Identities = 50/288 (17%), Positives = 99/288 (34%), Gaps = 28/288 (9%)
Query: 271 YLPRLAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMA 330
+ AQ D + S ++A Y +NG+ W S D A+ ++
Sbjct: 98 LFSQQAQEDV--WGNDTDVRISSSYAPMGAGQVVDGGYTVNGAWAWSSGCDHASWAVLGG 155
Query: 331 NVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGE 390
V F++ R + + N +G++ +G+ ++ ++V VP ++S
Sbjct: 156 PVIKDGRPVDFVSFLIPRE--DYRIDDVWNVVGLRGTGSNTVVVEDVFVPTHRVLSFKAM 213
Query: 391 GYKIAAGFLNQGR------------IGIAAQMTGLAQGCLDATIPYTLERSQ---FGHRI 435
A G I+A + G+A G DA + + +R + G +
Sbjct: 214 SNLTAPGLERNTAPVYKMPWGTIHPTTISAPIVGMAYGAYDAHVEHQGKRVRAAFAGEKA 273
Query: 436 FDFQSVQHQISQAATQVECARLLTYNAAR----LLEAGQPFIKQAS----MAKYFASEMA 487
D + +I++A++ ++ A LL AG+ + + A+ A
Sbjct: 274 KDDPFAKVRIAEASSDIDAAWRQLSGNVADEYALLVAGEEVPFELRLRARRDQVRATGRA 333
Query: 488 GHITRQCIDWMGGLGFTKDYPQEKFYRDCKMA-GHITRQCIDWMGGLG 534
+ + G P ++F+RD H G
Sbjct: 334 ISSIDKLFESSGATALANGTPLQRFWRDAHAGRVHAANDPERAYVMYG 381
Score = 124 bits (314), Expect = 3e-31
Identities = 43/249 (17%), Positives = 85/249 (34%), Gaps = 34/249 (13%)
Query: 9 YLPRLAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMA 68
+ AQ D + S ++A Y +NG+ W S D A+ ++
Sbjct: 98 LFSQQAQEDV--WGNDTDVRISSSYAPMGAGQVVDGGYTVNGAWAWSSGCDHASWAVLGG 155
Query: 69 NVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGVGE 128
V F++ R + + N +G++ +G+ ++ ++V VP ++S
Sbjct: 156 PVIKDGRPVDFVSFLIPRE--DYRIDDVWNVVGLRGTGSNTVVVEDVFVPTHRVLSFKAM 213
Query: 129 GYKIAAGFLNQGR------------IGIAAQMTGLAQGCLDATIPYTLERSQV---GHRI 173
A G I+A + G+A G DA + + +R + G +
Sbjct: 214 SNLTAPGLERNTAPVYKMPWGTIHPTTISAPIVGMAYGAYDAHVEHQGKRVRAAFAGEKA 273
Query: 174 FDFQACNGGSVQHQISQAVTQVECARLLTYNAAR----LLEAGQPFIKQAS----MAKYF 225
D + +I++A + ++ A LL AG+ + +
Sbjct: 274 KDDPF-----AKVRIAEASSDIDAAWRQLSGNVADEYALLVAGEEVPFELRLRARRDQVR 328
Query: 226 ASVAKLAKE 234
A A
Sbjct: 329 A--TGRAIS 335
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix
bundle, oxidoreductase; 2.50A {Burkholderia cepacia}
Length = 515
Score = 142 bits (358), Expect = 1e-36
Identities = 28/283 (9%), Positives = 67/283 (23%), Gaps = 31/283 (10%)
Query: 266 EQKEKYLPRLAQTD-AGSFALSEP------GSGSDAFAMKTTATKDGNHYILNGSKMWIS 318
+ +L L + D +P + K + I+NG K +
Sbjct: 133 QNIHNFLKLLREKDLNCPLNFVDPQTDRSSDAAQARSPNLRIVEKTDDGIIVNGVKAVGT 192
Query: 319 NADIANIFLVMANVDVSKGYRGITCFIVERSMEGFSV---------GKKENKLGMK-ASG 368
+ + + + + G +V E+ L +
Sbjct: 193 GIAFGDYMHIGCLYRPGIPGEQVIFAAIPTNTPGVTVFCRESTVKNDPAEHPLASQGDEL 252
Query: 369 TCSLHFDNVRVPEENIIS--GVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTL 426
+ FDNV +P E + + I + A+ +
Sbjct: 253 DSTTVFDNVFIPWEQVFHIGNPEHAKLYPQRIFDWVHYHILIRQVLRAELIVGL-----A 307
Query: 427 ERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAGQ-----PFIKQASMAKY 481
+V ++++ + + + P +
Sbjct: 308 ILITEHIGTSKLPTVSARVAKLVAFHLAMQAHLIASEETGFHTKGGRYKPNPLIYDFGRA 367
Query: 482 FASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITR 524
+ + + +D G P E + D + +
Sbjct: 368 HFLQNQMSVMYELLDLAGRSSLM--IPSEGQWDDSQSGQWFVK 408
Score = 118 bits (297), Expect = 1e-28
Identities = 36/334 (10%), Positives = 82/334 (24%), Gaps = 47/334 (14%)
Query: 4 EQKEKYLPRLAQTD-AGSFALSEP------GSGSDAFAMKTTATKDGNHYILNGSKMWIS 56
+ +L L + D +P + K + I+NG K +
Sbjct: 133 QNIHNFLKLLREKDLNCPLNFVDPQTDRSSDAAQARSPNLRIVEKTDDGIIVNGVKAVGT 192
Query: 57 NADIANIFLVMANVDVSKGYRGITCFIVERSMEGFSV---------GKKENKLGMK-ASG 106
+ + + + + G +V E+ L +
Sbjct: 193 GIAFGDYMHIGCLYRPGIPGEQVIFAAIPTNTPGVTVFCRESTVKNDPAEHPLASQGDEL 252
Query: 107 TCSLHFDNVRVPEENIIS--GVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDATIPYTL 164
+ FDNV +P E + + I + A+ + I T
Sbjct: 253 DSTTVFDNVFIPWEQVFHIGNPEHAKLYPQRIFDWVHYHILIRQVLRAELIVGLAILITE 312
Query: 165 ERSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAGQ-----PFIKQA 219
+V ++++ V + + + P
Sbjct: 313 HIG-----TSKLP-----TVSARVAKLVAFHLAMQAHLIASEETGFHTKGGRYKPNPLIY 362
Query: 220 SMAKYFAS-----VAKLAKETIAPYVQKMESEEKIDETVLKTLFESGL----GTTEQKEK 270
+ V + + SE + D++ F G ++ +
Sbjct: 363 DFGRAHFLQNQMSVMYELLDLAGRSSLMIPSEGQWDDSQSGQWFVKLNNGPKGNPRERVQ 422
Query: 271 YLPRLAQTDAGSFA----LSEPGSGSDAFAMKTT 300
+ + + E +G+ FA+
Sbjct: 423 IGRVIRDLYLTDWGGRQFMFENFNGTPLFAVFAA 456
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8
center, oxygnase component, 4- hydroxyphenylacetate
3-monooxygenase; 1.60A {Thermus thermophilus} PDB:
2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*
Length = 481
Score = 128 bits (322), Expect = 4e-32
Identities = 44/279 (15%), Positives = 79/279 (28%), Gaps = 36/279 (12%)
Query: 266 EQKEKYLPRLAQTD-AGSFALSEPGSG--------SDAFAMKTTATKDGNHYILNGSKMW 316
E Y L D A + AL+ P D + + ++ G++M
Sbjct: 124 ENVRNYYRYLRDQDLATTHALTNPQVNRARPPSGQPDPYIPVGVVKQTEKGIVVRGARMT 183
Query: 317 ISNADIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKAS--------- 367
+ + + + + + + F + S G +E +G +
Sbjct: 184 ATFPLADEVLIFPSILLQAGSEKYALAFALPTSTPGLHFVCREALVGGDSPFDHPLSSRV 243
Query: 368 --GTCSLHFDNVRVPEENIIS----GVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDAT 421
C + FD+V VP E + + A G LN + A T + L
Sbjct: 244 EEMDCLVIFDDVLVPWERVFILGNVELCNNAYGATGALNHMAHQVVALKTAKTEAFLGV- 302
Query: 422 IPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAG-----QPFIKQA 476
G + VQ +I++ +E R A + P
Sbjct: 303 ----AALMAEGIGADVYGHVQEKIAEIIVYLEAMRAFWTRAEEEAKENAYGLLVPDRGAL 358
Query: 477 SMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRD 515
A+ + I T P EK ++
Sbjct: 359 DGARNLYPRLYPRIREILEQIGASGLIT--LPSEKDFKG 395
Score = 112 bits (280), Expect = 2e-26
Identities = 42/278 (15%), Positives = 83/278 (29%), Gaps = 44/278 (15%)
Query: 4 EQKEKYLPRLAQTD-AGSFALSEPGSG--------SDAFAMKTTATKDGNHYILNGSKMW 54
E Y L D A + AL+ P D + + ++ G++M
Sbjct: 124 ENVRNYYRYLRDQDLATTHALTNPQVNRARPPSGQPDPYIPVGVVKQTEKGIVVRGARMT 183
Query: 55 ISNADIANIFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKAS--------- 105
+ + + + + + + F + S G +E +G +
Sbjct: 184 ATFPLADEVLIFPSILLQAGSEKYALAFALPTSTPGLHFVCREALVGGDSPFDHPLSSRV 243
Query: 106 --GTCSLHFDNVRVPEENIIS----GVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDAT 159
C + FD+V VP E + + A G LN + A T + L
Sbjct: 244 EEMDCLVIFDDVLVPWERVFILGNVELCNNAYGATGALNHMAHQVVALKTAKTEAFLGV- 302
Query: 160 IPYTLERSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAG-----QP 214
G + VQ +I++ + +E R A + P
Sbjct: 303 ----AALMAEGIGADVYG-----HVQEKIAEIIVYLEAMRAFWTRAEEEAKENAYGLLVP 353
Query: 215 FIKQASMAKYFAS-----VAKLAKETIAPYVQKMESEE 247
A+ + ++ ++ A + + SE+
Sbjct: 354 DRGALDGARNLYPRLYPRIREILEQIGASGLITLPSEK 391
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics,
PSI-2, protein structure initiative, midwest CENT
structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus
SP}
Length = 414
Score = 121 bits (305), Expect = 5e-30
Identities = 45/268 (16%), Positives = 90/268 (33%), Gaps = 25/268 (9%)
Query: 271 YLPRLAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMA 330
+ Q + + + +A AT Y+L G + S D + A
Sbjct: 111 FADPQVQEEI--WGEDNDTWMASPYAPMGVATPVDGGYVLKGRWSFSSGTDHCQWAFLGA 168
Query: 331 NVDVSKGYRGI--TCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGV 388
V +G + ++ + V + +G++ +G+ L D VP ++
Sbjct: 169 MVGDGEGGIATPSSLHVILPRTDYQIVEDTWDVIGLRGTGSKDLIVDGAFVPGYRTLNAA 228
Query: 389 GEGYKIAAGFLNQGR------------IGIAAQMTGLAQGCLDATIPYTLER-SQFGHRI 435
A + +GI A + G+ +G L I +R + G +I
Sbjct: 229 KVMDGRAQKEAGRPEPLFNMPYSCMFPLGITAAVIGITEGALACHIAVQKDRVAITGQKI 288
Query: 436 FDFQSVQHQISQAATQVECARLLTYNAARLL----EAGQPFIKQAS----MAKYFASEMA 487
+ V I ++A ++ +R+ A +AG+ + + A+ A
Sbjct: 289 KEDPYVLSAIGESAAEINASRVSLIETADRFYDKVDAGKEITFEERAIGRRTQIAAAWRA 348
Query: 488 GHITRQCIDWMGGLGFTKDYPQEKFYRD 515
+ GG P ++F+RD
Sbjct: 349 VRAADEIFARAGGGALHYKTPMQRFWRD 376
Score = 93.7 bits (233), Expect = 1e-20
Identities = 34/218 (15%), Positives = 70/218 (32%), Gaps = 22/218 (10%)
Query: 9 YLPRLAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMA 68
+ Q + + + +A AT Y+L G + S D + A
Sbjct: 111 FADPQVQEEI--WGEDNDTWMASPYAPMGVATPVDGGYVLKGRWSFSSGTDHCQWAFLGA 168
Query: 69 NVDVSKGYRGI--TCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENIISGV 126
V +G + ++ + V + +G++ +G+ L D VP ++
Sbjct: 169 MVGDGEGGIATPSSLHVILPRTDYQIVEDTWDVIGLRGTGSKDLIVDGAFVPGYRTLNAA 228
Query: 127 GEGYKIAAGFLNQGR------------IGIAAQMTGLAQGCLDATIPYTLERSQV-GHRI 173
A + +GI A + G+ +G L I +R + G +I
Sbjct: 229 KVMDGRAQKEAGRPEPLFNMPYSCMFPLGITAAVIGITEGALACHIAVQKDRVAITGQKI 288
Query: 174 FDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEA 211
+ V I ++ ++ +R+ A
Sbjct: 289 KEDPY-----VLSAIGESAAEINASRVSLIETADRFYD 321
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes,
beta-strands, lyase; HET: FAD; 1.60A {Clostridium
aminobutyricum} SCOP: a.29.3.1 e.6.1.1
Length = 490
Score = 118 bits (297), Expect = 9e-29
Identities = 38/294 (12%), Positives = 83/294 (28%), Gaps = 39/294 (13%)
Query: 269 EKYLPRLAQTD-AGSFALSEPGSG--------SDAFAMKTTATKDGNHYILNGSKMWISN 319
+YL + + D A+++P D K + ++ G+K +
Sbjct: 132 TEYLKYIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLRIVEKREDGIVVRGAKAHQTG 191
Query: 320 ADIANIFLVMANVDVSKGYRG-ITCFIVERSMEGFSVGKKENKLGMKAS----------- 367
+ ++ ++M + +++ + F +G + +
Sbjct: 192 SINSHEHIIMPTIAMTEADKDYAVSFACPSDADGLFMIYGRQSCDTRKMEEGADIDLGNK 251
Query: 368 ----GTCSLHFDNVRVPEENIIS--GVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDAT 421
+ FDNV +P + I + F R G+ + A
Sbjct: 252 QFGGQEALVVFDNVFIPNDRIFLCQEYDFAGMMVERFAGYHRQSYGGCKVGVGDVVIGA- 310
Query: 422 IPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLTYNAARLLEAG-----QPFIKQA 476
+ + V+ ++ + E + Q + A
Sbjct: 311 ----AALAADYNGAQKASHVKDKLIEMTHLNETLYCCGIACSAEGYPTAAGNYQIDLLLA 366
Query: 477 SMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWM 530
++ K + I R D GGL T P E ++ + G D+
Sbjct: 367 NVCKQNITRFPYEIVRLAEDIAGGLMVT--MPSEADFKSETVVGRDGETIGDFC 418
Score = 97.2 bits (241), Expect = 1e-21
Identities = 34/311 (10%), Positives = 84/311 (27%), Gaps = 49/311 (15%)
Query: 7 EKYLPRLAQTD-AGSFALSEPGSG--------SDAFAMKTTATKDGNHYILNGSKMWISN 57
+YL + + D A+++P D K + ++ G+K +
Sbjct: 132 TEYLKYIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLRIVEKREDGIVVRGAKAHQTG 191
Query: 58 ADIANIFLVMANVDVSKGYRG-ITCFIVERSMEGFSVGKKENKLGMKAS----------- 105
+ ++ ++M + +++ + F +G + +
Sbjct: 192 SINSHEHIIMPTIAMTEADKDYAVSFACPSDADGLFMIYGRQSCDTRKMEEGADIDLGNK 251
Query: 106 ----GTCSLHFDNVRVPEENIIS--GVGEGYKIAAGFLNQGRIGIAAQMTGLAQGCLDAT 159
+ FDNV +P + I + F R G+ + A
Sbjct: 252 QFGGQEALVVFDNVFIPNDRIFLCQEYDFAGMMVERFAGYHRQSYGGCKVGVGDVVIGA- 310
Query: 160 IPYTLERSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARLLEAG-----QP 214
+ + V+ ++ + E + Q
Sbjct: 311 ----AALAADYNGAQKASH-----VKDKLIEMTHLNETLYCCGIACSAEGYPTAAGNYQI 361
Query: 215 FIKQASMAKYFAS-----VAKLAKETIAPYVQKMESEEKIDETVLKTLFESGLGTTEQKE 269
+ A++ K + + +LA++ + M SE + +G +
Sbjct: 362 DLLLANVCKQNITRFPYEIVRLAEDIAGGLMVTMPSEADFKSETVVGRDGETIG--DFCN 419
Query: 270 KYLPRLAQTDA 280
K+
Sbjct: 420 KFFAAAPTCTT 430
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.0 bits (134), Expect = 2e-08
Identities = 91/658 (13%), Positives = 186/658 (28%), Gaps = 218/658 (33%)
Query: 31 DAFAMKTTATKDGN-HYILNGSKMWISNADIANIFLVMANVDVSKGYRGITCF------I 83
DAF + + + + K +S +I +I +M+ VS R +
Sbjct: 27 DAF------VDNFDCKDVQDMPKSILSKEEIDHI--IMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 84 VERSMEG------------FSVGKKENKLGMKASGTC--SLHFDNVRVPEENIISGVGEG 129
V++ +E +++ + + L+ DN + N+ +
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL--QP 136
Query: 130 Y-KIAAGFLN-QGRIGIAAQ-MTG-----LA-QGCLDATIPYTLERSQVGHRIF--DFQA 178
Y K+ L + + + G +A CL + + ++ +IF + +
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV-----QCKMDFKIFWLNLKN 191
Query: 179 CNGG--------SVQHQISQAVTQVE---CARLLTYNAA----RLLEAGQPF-------- 215
CN + +QI T L ++ R L +P+
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 216 -IKQASMAKYF------------ASVAKLAKETIAPYVQKMESEEKIDETVLKTLFESGL 262
++ A F V ++ + +K+L L
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 263 GTTEQKEKYLPRLAQTDAGS-FALSEPGSGSDAFAMKTTATKDGN-------HYILNGSK 314
Q LPR T + LS + + +DG H +
Sbjct: 312 DCRPQD---LPREVLT--TNPRRLS----------IIAESIRDGLATWDNWKHVNCDKLT 356
Query: 315 MWISNA--------------DIANIFLVMANVDVSKG-----YRGITCFIVERSMEGF-- 353
I ++ ++ +F + + + + V +
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLS-VF--PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 354 -SVGKKENKLGMKASGTCSLH--FDNVRVPEEN-------IISGVGEGYKIAAGFLNQGR 403
S+ +K+ K T S+ + ++V EN I+ + Y I F +
Sbjct: 414 YSLVEKQPK-----ESTISIPSIYLELKVKLENEYALHRSIV----DHYNIPKTFDS--- 461
Query: 404 IGIAAQMTGLAQGCLD----ATIPYTLERSQFGHRIFDFQSVQHQISQAATQVECARLLT 459
L LD + I + L+ + R+ F+ V L
Sbjct: 462 -------DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV---------------FLD 499
Query: 460 YNAARLLEAGQPFIKQASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRDCKMA 519
+ F++Q K I W Q KFY+
Sbjct: 500 FR----------FLEQ----K---------IRHDSTAWNASGSILNTLQQLKFYKP---- 532
Query: 520 GHITRQCIDWMGGLGFTKDY---PQEKYYRDCKVGTIYEGTSNIQLSTIAK--YIAKE 572
+I + + D+ +E + T ++++ +A+ I +E
Sbjct: 533 -YICDNDPKYERLVNAILDFLPKIEENLIC-------SKYTDLLRIALMAEDEAIFEE 582
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 1e-05
Identities = 89/552 (16%), Positives = 162/552 (29%), Gaps = 216/552 (39%)
Query: 160 IPYTLERSQVGHR-------IFDFQAC--NGGSVQHQI------SQAVTQVECARLL-TY 203
+ +E S+VG + +F+ C G + H + T V+ L+ Y
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI-HALAAKLLQENDTTLVKTKELIKNY 126
Query: 204 NAARLLEAGQPFIKQASMAKYFASVAKLAKETIA---------PYVQKMESEEKIDETVL 254
AR++ A +PF K+++ A F +V + + +A Y +++ + ++
Sbjct: 127 ITARIM-AKRPFDKKSNSA-LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLV 184
Query: 255 KTLFESG-------LGTTEQKEKYLPR-------LAQTDA-------GSFALSEPGSGSD 293
L + + TT EK + L S +S P G
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVI 244
Query: 294 AFAMKTTATKDGNHYILNGSKMWISNADIANIF---------LVMANVDVSK-------- 336
A HY++ + + ++ + LV A +++
Sbjct: 245 QLA----------HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA-IAETDSWESFF 293
Query: 337 -------------GYRGITCF--------IVERSMEG--------FSV-GKKENKLGMKA 366
G R + I+E S+E S+ + ++
Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV 353
Query: 367 SGTCSLHFDNVRVPEE--------N-----IISG-----VG-----EGYKIAAGFLNQGR 403
+ T N +P N ++SG G K +G L+Q R
Sbjct: 354 NKT------NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSG-LDQSR 406
Query: 404 IGIAAQMTGLAQGCLDATIPYTLERSQFGHRIFD-----FQS-----VQHQISQAATQVE 453
I P++ + +F +R F F S I++ +
Sbjct: 407 I------------------PFSERKLKFSNR-FLPVASPFHSHLLVPASDLINKDLVKNN 447
Query: 454 CARLLTYNAARLL------EAGQPFIKQASMAKYFASEMAGHITRQCIDWMGGLGFTKDY 507
+++NA + G ++ + + I R + W F
Sbjct: 448 ----VSFNAKDIQIPVYDTFDGSDL---RVLSGSISERIVDCIIRLPVKWETTTQFK--- 497
Query: 508 PQEKFYRDCKMAGHITRQCIDWMG-----GLG-FTKDYPQEKYYRDCKVGTIYEGTSNIQ 561
A HI +D G GLG T K GT G I
Sbjct: 498 -----------ATHI----LD-FGPGGASGLGVLTHRN---------KDGT---GVRVIV 529
Query: 562 LSTIAKYIAKEY 573
T+ +Y
Sbjct: 530 AGTLDINPDDDY 541
Score = 40.4 bits (94), Expect = 0.002
Identities = 47/294 (15%), Positives = 79/294 (26%), Gaps = 110/294 (37%)
Query: 6 KEKYLPRLAQTDAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWIS---NADIAN 62
+E Y + +T +E F + Y K +S A
Sbjct: 1685 RENYSAMIFETIVDGKLKTEK-----IFKEINEHSTS---YTFRSEKGLLSATQFTQPA- 1735
Query: 63 IFLVMANVDVSKGYRGITCFIVERSMEGFSVGKKENKLGMKASGTCSLHFDNVRVPEENI 122
+ L+ F +K+ G +P +
Sbjct: 1736 LTLM--------------------EKAAFED--------LKSKGL---------IPADAT 1758
Query: 123 ISG--VGEGYKIA----AGFLN--------QGRIGIAAQMTGLAQGCLDATIPYTLERSQ 168
+G +GE Y A A ++ R G+ Q+ + R +
Sbjct: 1759 FAGHSLGE-YA-ALASLADVMSIESLVEVVFYR-GMTMQVA--------------VPRDE 1801
Query: 169 VGHRIFDFQACNGGSVQHQISQAVTQVECARLLT----------YNAARLLEAGQPFIKQ 218
+G + A N G V SQ Q R+ YN Q Q
Sbjct: 1802 LGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNV-----ENQ----Q 1852
Query: 219 ASMAKYFASVAKLAKETIAPYVQKMESEEKIDETVLKTLFESGLGTTEQKEKYL 272
A ++ + V +KID + L +S + E+ E +L
Sbjct: 1853 YVAAGDLRALDTVTN------VLNFIKLQKID---IIELQKS--LSLEEVEGHL 1895
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.025
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 7/35 (20%)
Query: 4 EQKEKYLPRLAQTDAGSFALSEPGSGSDAFAMKTT 38
E++ L +L S L S + A A+K T
Sbjct: 18 EKQA--LKKLQ----ASLKLYADDS-APALAIKAT 45
Score = 34.2 bits (77), Expect = 0.043
Identities = 12/68 (17%), Positives = 19/68 (27%), Gaps = 41/68 (60%)
Query: 233 KETIAPYVQKMESEEKIDETVLKTLFESGLGTTEQKEKYLPRLAQTDAGSFALSEPGSGS 292
K+ + +K+++ LK Y D S P
Sbjct: 19 KQAL----KKLQAS-------LK--------------LYAD-----D------SAP---- 38
Query: 293 DAFAMKTT 300
A A+K T
Sbjct: 39 -ALAIKAT 45
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding,
exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Length = 124
Score = 31.7 bits (71), Expect = 0.23
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 6/67 (8%)
Query: 488 GHITRQC---IDWMGGLG---FTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQ 541
GH+ + C I G +++ P+ C GH QC + T +
Sbjct: 14 GHLKKDCPHIICSYCGATDDHYSRHCPKAIQCSKCDEVGHYRSQCPHKWKKVQCTLCKSK 73
Query: 542 EKYYRDC 548
+ C
Sbjct: 74 KHSKERC 80
Score = 29.7 bits (66), Expect = 1.2
Identities = 10/61 (16%), Positives = 14/61 (22%), Gaps = 10/61 (16%)
Query: 488 GHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLGFTKDYPQEKYYRD 547
GH QC ++ CK H +C D + K
Sbjct: 52 GHYRSQC----------PHKWKKVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVL 101
Query: 548 C 548
Sbjct: 102 P 102
Score = 28.2 bits (62), Expect = 3.6
Identities = 8/62 (12%), Positives = 13/62 (20%), Gaps = 9/62 (14%)
Query: 474 KQASMAKYFASEMAGHITRQCIDWMGGLGFTKDYPQEKFYRD---------CKMAGHITR 524
+ + + H +C D + K C GH
Sbjct: 60 HKWKKVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGGKGHFGD 119
Query: 525 QC 526
C
Sbjct: 120 DC 121
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding
protein, retrovirus, viral protein; NMR {Mason-pfizer
monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Length = 60
Score = 28.0 bits (62), Expect = 1.5
Identities = 10/47 (21%), Positives = 13/47 (27%), Gaps = 3/47 (6%)
Query: 488 GHITRQCIDWMGGLGFTKDYPQEKFYRDCKMAGHITRQCIDWMGGLG 534
GH + C + K R CK H +C G
Sbjct: 11 GHFAKNCHEHAHNNAEPK--VPGLCPR-CKRGKHWANECKSKTDNQG 54
>2bi0_A Hypothetical protein RV0216; conserved hypothetical, hotdog-fold,
structural proteomics in europe, spine, structural
genomics; 1.9A {Mycobacterium tuberculosis} SCOP:
d.38.1.4 d.38.1.4
Length = 337
Score = 28.9 bits (64), Expect = 5.3
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 166 RSQVGHRIFDFQACNGGSVQHQISQAVTQVECARLLTYNAARL 208
R +V FD G+V H + V+ LT N A
Sbjct: 196 RKRVPGPHFDAGI--AGAVLHSTADLVSGAPELARLTLNIAAT 236
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.2 bits (62), Expect = 7.3
Identities = 7/49 (14%), Positives = 13/49 (26%), Gaps = 5/49 (10%)
Query: 500 GLGFTKDYPQEKFYRDCKMA---GHITRQCIDWMGGLGFTKDYPQEKYY 545
G+ +Y E I + GL + + K +
Sbjct: 117 GMAIQVNYSSEVKENSVDSDDKAKVPPLIRI--VSGLELSDTKQKGKKF 163
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 28.0 bits (63), Expect = 8.1
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 476 ASMAKYFASEMAGHITRQCIDWMGGLG 502
A M Y A +T Q ++ GGLG
Sbjct: 249 AEMVAYLIGPGAAAVTAQALNVCGGLG 275
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 28.0 bits (63), Expect = 9.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 476 ASMAKYFASEMAGHITRQCIDWMGGLG 502
A + Y ++ A IT Q ++ GGLG
Sbjct: 251 AGLVGYLVTDAAASITAQALNVCGGLG 277
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.388
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,670,211
Number of extensions: 528772
Number of successful extensions: 1262
Number of sequences better than 10.0: 1
Number of HSP's gapped: 968
Number of HSP's successfully gapped: 147
Length of query: 575
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 476
Effective length of database: 3,937,614
Effective search space: 1874304264
Effective search space used: 1874304264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.4 bits)