BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5139
(216 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|B Chain B, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|C Chain C, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|D Chain D, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
Length = 404
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 54/75 (72%)
Query: 68 LAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTT 127
L Q LMG+E+ EYGG G SF++ +L++EE+A+VD SV++ +IQNTL+N LI K GT
Sbjct: 69 LFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTE 128
Query: 128 EQKEKYLPRLAQTDV 142
EQK YLP+L V
Sbjct: 129 EQKATYLPQLTTEKV 143
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
L+G+E+ EYGG G SF++ +L++EE+A+VD SV++ +IQNTL+N LI K GT EQK
Sbjct: 74 LMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKAT 133
Query: 64 YLPRLAQTDLMGVEIPQEYGGPGLSF 89
YLP+L T+ +G E G SF
Sbjct: 134 YLPQLT-TEKVGSFCLSEAGAGSDSF 158
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GNC|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
Length = 399
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 48/73 (65%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
LLG IP++YGGPGL +++ LI E+ RVD ++ +Q++LV I + G+ QKEK
Sbjct: 67 LLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEK 126
Query: 64 YLPRLAQTDLMGV 76
YLP+LA + +G
Sbjct: 127 YLPKLATGEWIGC 139
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 47/71 (66%)
Query: 68 LAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTT 127
+ + L+G IP++YGGPGL +++ LI E+ RVD ++ +Q++LV I + G+
Sbjct: 62 MGEIGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSD 121
Query: 128 EQKEKYLPRLA 138
QKEKYLP+LA
Sbjct: 122 AQKEKYLPKLA 132
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|B Chain B, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|C Chain C, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|D Chain D, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EON|A Chain A, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|B Chain B, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|C Chain C, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|D Chain D, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3II9|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
Length = 396
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 48/73 (65%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
LLG IP++YGGPGL +++ LI E+ RVD ++ +Q++LV I + G+ QKEK
Sbjct: 64 LLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEK 123
Query: 64 YLPRLAQTDLMGV 76
YLP+LA + +G
Sbjct: 124 YLPKLATGEWIGC 136
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 47/71 (66%)
Query: 68 LAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTT 127
+ + L+G IP++YGGPGL +++ LI E+ RVD ++ +Q++LV I + G+
Sbjct: 59 MGEIGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSD 118
Query: 128 EQKEKYLPRLA 138
QKEKYLP+LA
Sbjct: 119 AQKEKYLPKLA 129
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|B Chain B, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|C Chain C, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|D Chain D, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
Length = 395
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 48/73 (65%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
LLG IP++YGGPGL +++ LI E+ RVD ++ +Q++LV I + G+ QKEK
Sbjct: 63 LLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEK 122
Query: 64 YLPRLAQTDLMGV 76
YLP+LA + +G
Sbjct: 123 YLPKLATGEWIGC 135
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 47/71 (66%)
Query: 68 LAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTT 127
+ + L+G IP++YGGPGL +++ LI E+ RVD ++ +Q++LV I + G+
Sbjct: 58 MGEIGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSD 117
Query: 128 EQKEKYLPRLA 138
QKEKYLP+LA
Sbjct: 118 AQKEKYLPKLA 128
>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|C Chain C, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|D Chain D, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|E Chain E, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|F Chain F, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|G Chain G, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|H Chain H, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|I Chain I, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
Length = 385
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 65 LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
+PR A+ +G +P EYGG G+S LI E+ RVD + V +Q++LV I
Sbjct: 48 IPRFAELGFLGPTLPPEYGGAGVSSAAYGLICYELERVDSGLRSFVSVQSSLVMYPIYAY 107
Query: 125 GTTEQKEKYLPRLAQTDV 142
G+ EQK ++LP+LA+ ++
Sbjct: 108 GSEEQKREFLPKLARGEM 125
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
LG +P EYGG G+S LI E+ RVD + V +Q++LV I G+ EQK +
Sbjct: 56 FLGPTLPPEYGGAGVSSAAYGLICYELERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKRE 115
Query: 64 YLPRLAQTDLMGV 76
+LP+LA+ +++G
Sbjct: 116 FLPKLARGEMVGC 128
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|B Chain B, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|C Chain C, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|D Chain D, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
Length = 394
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
+LG+ P +YGG GL ++ +L++EEI+R +V + + L + +++ G QKEK
Sbjct: 60 VLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEK 119
Query: 64 YLPRLAQTDLMGV 76
YLP+L + +G
Sbjct: 120 YLPKLISGEYIGA 132
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 45/75 (60%)
Query: 63 KYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLII 122
++ +L ++G+ P +YGG GL ++ +L++EEI+R +V + + L + ++
Sbjct: 50 EFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLV 109
Query: 123 KLGTTEQKEKYLPRL 137
+ G QKEKYLP+L
Sbjct: 110 RNGNEAQKEKYLPKL 124
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
Length = 436
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 66 PRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLG 125
P+L + G I + YG PGLS + + EIARVD S S + + ++L I G
Sbjct: 93 PKLGAMGVAGGSI-KGYGCPGLSITANAIATAEIARVDASCSTFILVHSSLGMLTIALCG 151
Query: 126 TTEQKEKYLPRLAQ 139
+ QKEKYLP LAQ
Sbjct: 152 SEAQKEKYLPSLAQ 165
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 34/58 (58%)
Query: 13 YGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQ 70
YG PGLS + + EIARVD S S + + ++L I G+ QKEKYLP LAQ
Sbjct: 108 YGCPGLSITANAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQ 165
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|E Chain E, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|F Chain F, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
Length = 449
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 66 PRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLG 125
P+L + G I + YG PGLS + + EIARVD S S + + ++L I G
Sbjct: 93 PKLGAMGVAGGSI-KGYGCPGLSITANAIATAEIARVDASCSTFILVHSSLGMLTIALCG 151
Query: 126 TTEQKEKYLPRLAQ 139
+ QKEKYLP LAQ
Sbjct: 152 SEAQKEKYLPSLAQ 165
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 34/58 (58%)
Query: 13 YGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQ 70
YG PGLS + + EIARVD S S + + ++L I G+ QKEKYLP LAQ
Sbjct: 108 YGCPGLSITANAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQ 165
>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|1WS9|B Chain B, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2CX9|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2D29|A Chain A, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2D29|B Chain B, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
Length = 387
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 67 RLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGT 126
+LA+ + G +P+ YGG GLS +VE IA D ++++ V N+L I+ G+
Sbjct: 46 KLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGS 105
Query: 127 TEQKEKYLPRLAQTDV 142
QKE +LP+LA +
Sbjct: 106 EAQKEAFLPKLASGEA 121
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
+ G +P+ YGG GLS +VE IA D ++++ V N+L I+ G+ QKE
Sbjct: 52 VFGALVPEAYGGAGLSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEA 111
Query: 64 YLPRLAQTDLMGV 76
+LP+LA + +G
Sbjct: 112 FLPKLASGEALGA 124
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|B Chain B, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|C Chain C, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|D Chain D, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|E Chain E, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|F Chain F, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|G Chain G, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|H Chain H, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
Length = 391
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
LL +++P+E GG GL ++ + +EEI+R S +++ + N+L I+K G+ EQK+
Sbjct: 51 LLAMDVPEELGGAGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQA 110
Query: 64 YLPRLAQTDLMGV 76
++ D +G
Sbjct: 111 WVTPFTSGDKIGC 123
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 61 KEKYLP-----RLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNT 115
KE P ++ L+ +++P+E GG GL ++ + +EEI+R S +++ + N+
Sbjct: 34 KEHLFPAAQVKKMGGLGLLAMDVPEELGGAGLDYLAYAIAMEEISRGCASTGVIMSVNNS 93
Query: 116 LVNDLIIKLGTTEQKEKYLPRLAQTD 141
L I+K G+ EQK+ ++ D
Sbjct: 94 LYLGPILKFGSKEQKQAWVTPFTSGD 119
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase
pdb|2Z1Q|B Chain B, Crystal Structure Of Acyl Coa Dehydrogenase
Length = 577
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 79/191 (41%), Gaps = 26/191 (13%)
Query: 34 DPSVSILVDIQNTLVNDLIIKL------GTTEQKEKYLPRLAQTDLMGVEIPQEYGGPGL 87
D SV + T V ++ L G E + + + L+ +++P+EYGG L
Sbjct: 29 DESVKEIARTTRTFVEREVLPLLERMEHGELELNVPLMRKAGELGLLAIDVPEEYGGLDL 88
Query: 88 SFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDVSRTSR 147
+ ++ EE++ S+ ++ ++ GT EQK KYLP+LA
Sbjct: 89 PKVISTVVAEELSG-SGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASG------- 140
Query: 148 GYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQ------LKRWMVSCGLSLQILQFQ 201
EW A Y T+ +D L+ + + DG+ +K+W+ + G + F
Sbjct: 141 -----EWIAAYCLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNAGFAHLFTVFA 195
Query: 202 NLSSDMHMTGL 212
+ + H T
Sbjct: 196 KVDGE-HFTAF 205
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
LL +++P+EYGG L + ++ EE++ S+ ++ ++ GT EQK K
Sbjct: 74 LLAIDVPEEYGGLDLPKVISTVVAEELSG-SGGFSVTYGAHTSIGTLPLVYFGTEEQKRK 132
Query: 64 YLPRLAQTD 72
YLP+LA +
Sbjct: 133 YLPKLASGE 141
>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
pdb|2DVL|B Chain B, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
Length = 372
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 20/134 (14%)
Query: 65 LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
L LA+ L+G+ P+E+GG GL +T L +EE+A DPSV+++V + + L ++++
Sbjct: 40 LKALAELGLLGMTTPEEWGGVGLDSVTWALALEELAAADPSVAVIVSVTSGLPQYMLLRF 99
Query: 125 GTTEQKEKYLPRLAQTDVSRTSRGYKALEWHAFY------GRTDSLPLNDHLSHISSGCV 178
G+ QK +YL LA RG EW + +D+ L + G V
Sbjct: 100 GSEAQKRRYLVPLA--------RG----EWIGAFCLTEPQAGSDAKSLRAEARRVKGGFV 147
Query: 179 GFDGQLKRWMVSCG 192
+G +K W+ S G
Sbjct: 148 -LNG-VKSWITSAG 159
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 48/73 (65%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
LLG+ P+E+GG GL +T L +EE+A DPSV+++V + + L ++++ G+ QK +
Sbjct: 48 LLGMTTPEEWGGVGLDSVTWALALEELAAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRR 107
Query: 64 YLPRLAQTDLMGV 76
YL LA+ + +G
Sbjct: 108 YLVPLARGEWIGA 120
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
Length = 392
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 5 LGVEIP--QEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKE 62
LGV P + YG G+S + L+ E+ RVD + +Q++LV I G+ EQ++
Sbjct: 57 LGVLGPTIKGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQ 116
Query: 63 KYLPRLAQTDLMGV 76
KYLP+LA+ +L+G
Sbjct: 117 KYLPQLAKGELLGC 130
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 82 YGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTD 141
YG G+S + L+ E+ RVD + +Q++LV I G+ EQ++KYLP+LA+ +
Sbjct: 67 YGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGE 126
Query: 142 V 142
+
Sbjct: 127 L 127
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
pdb|2R0N|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 5 LGVEIP--QEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKE 62
LGV P + YG G+S + L+ E+ RVD + +Q++LV I G+ EQ++
Sbjct: 59 LGVLGPTIKGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQ 118
Query: 63 KYLPRLAQTDLMGV 76
KYLP+LA+ +L+G
Sbjct: 119 KYLPQLAKGELLGC 132
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 82 YGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTD 141
YG G+S + L+ E+ RVD + +Q++LV I G+ EQ++KYLP+LA+ +
Sbjct: 69 YGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGE 128
Query: 142 V 142
+
Sbjct: 129 L 129
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 5 LGVEIP--QEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKE 62
LGV P + YG G+S + L+ E+ RVD + +Q++LV I G+ EQ++
Sbjct: 59 LGVLGPTIKGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQ 118
Query: 63 KYLPRLAQTDLMGV 76
KYLP+LA+ +L+G
Sbjct: 119 KYLPQLAKGELLGC 132
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 82 YGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTD 141
YG G+S + L+ E+ RVD + +Q++LV I G+ EQ++KYLP+LA+ +
Sbjct: 69 YGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGE 128
Query: 142 V 142
+
Sbjct: 129 L 129
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
Length = 597
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 67/131 (51%), Gaps = 10/131 (7%)
Query: 17 GLSFMTDILIVEEIARVDPSVS----ILVDIQNTLVNDLIIKLGTTEQKE-----KYLPR 67
G SF+ D + ++++ + S I ++ +VN+++ +L EQ E + L
Sbjct: 14 GGSFLVDEITIDQVFTPEDFSSEHKXIAKTTEDFIVNEVLPELEYLEQHEFDRSVRLLKE 73
Query: 68 LAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTT 127
+ L+G ++P+EYGG GL ++ LI E+ +R +I + + I+ G
Sbjct: 74 AGELGLLGADVPEEYGGIGLDKVSSALIAEKFSRAG-GFAITHGAHVGIGSLPIVLFGNE 132
Query: 128 EQKEKYLPRLA 138
EQK+KYLP LA
Sbjct: 133 EQKKKYLPLLA 143
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
LLG ++P+EYGG GL ++ LI E+ +R +I + + I+ G EQK+K
Sbjct: 79 LLGADVPEEYGGIGLDKVSSALIAEKFSRAG-GFAITHGAHVGIGSLPIVLFGNEEQKKK 137
Query: 64 YLPRLA 69
YLP LA
Sbjct: 138 YLPLLA 143
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|B Chain B, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|C Chain C, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|D Chain D, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
Length = 393
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 62 EKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLI 121
E+ L L + + +P+EYGG G + +++EE+ARVD S S++ + LI
Sbjct: 53 EEALAALNSSGFSAIHVPEEYGGQGADSVATCIVIEEVARVDCSASLIPAVNKLGTMGLI 112
Query: 122 IKLGTTEQKEKYLPRLAQTDV 142
++ G+ E K++ LP +A +
Sbjct: 113 LR-GSEELKKQVLPAVASGEA 132
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 7 VEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLP 66
+ +P+EYGG G + +++EE+ARVD S S++ + LI++ G+ E K++ LP
Sbjct: 67 IHVPEEYGGQGADSVATCIVIEEVARVDCSASLIPAVNKLGTMGLILR-GSEELKKQVLP 125
Query: 67 RLAQTDLM 74
+A + M
Sbjct: 126 AVASGEAM 133
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
pdb|1JQI|B Chain B, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
Length = 388
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 44/73 (60%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
LL +++P+E G GL ++ + +EEI+R S +++ + N+L I+K G+++QK++
Sbjct: 55 LLAMDVPEELSGAGLDYLAYSIALEEISRGCASTGVIMSVNNSLYLGPILKFGSSQQKQQ 114
Query: 64 YLPRLAQTDLMGV 76
++ D +G
Sbjct: 115 WITPFTNGDKIGC 127
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 61 KEKYLP-----RLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNT 115
KE P ++ + L+ +++P+E G GL ++ + +EEI+R S +++ + N+
Sbjct: 38 KEHLFPTSQVKKMGELGLLAMDVPEELSGAGLDYLAYSIALEEISRGCASTGVIMSVNNS 97
Query: 116 LVNDLIIKLGTTEQKEKYLPRLAQTD 141
L I+K G+++QK++++ D
Sbjct: 98 LYLGPILKFGSSQQKQQWITPFTNGD 123
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|C Chain C, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPJ|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|E Chain E, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|F Chain F, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|G Chain G, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Length = 397
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 46 TLVNDLIIKLGTTEQKEKYLPR------LAQTDLMGVEIPQEYGGPGL--SFMTDILIVE 97
VN I+ E + P + + G IP+EYGG G+ ++ +++ E
Sbjct: 18 NFVNKKIVPFADQWDNENHFPYEEAVRPMGELGFFGTVIPEEYGGEGMDQGWLAAMIVTE 77
Query: 98 EIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTD 141
EIAR ++ + ++++ I+ G+ K+KY+P+L+ +
Sbjct: 78 EIARGSSALRVQLNMEVLGCAYTILTYGSEALKKKYVPKLSSAE 121
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 4 LLGVEIPQEYGGPGL--SFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQK 61
G IP+EYGG G+ ++ +++ EEIAR ++ + ++++ I+ G+ K
Sbjct: 51 FFGTVIPEEYGGEGMDQGWLAAMIVTEEIARGSSALRVQLNMEVLGCAYTILTYGSEALK 110
Query: 62 EKYLPRLAQTDLMG 75
+KY+P+L+ + +G
Sbjct: 111 KKYVPKLSSAEFLG 124
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa
Dehydrogenase (acadvl)
Length = 607
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 33 VDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTD 92
V+P ++ + ND + + +E L + G+++P E GG GL
Sbjct: 58 VEPVSRFFEEVNDPAKNDALEMV-----EETTWQGLKELGAFGLQVPSELGGVGLCNTQY 112
Query: 93 ILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTD 141
+VE + D V I + ++ I+ GT QKEKYLP+LA +
Sbjct: 113 ARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGE 161
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 5 LGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKY 64
G+++P E GG GL +VE + D V I + ++ I+ GT QKEKY
Sbjct: 94 FGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKY 153
Query: 65 LPRLAQTD 72
LP+LA +
Sbjct: 154 LPKLASGE 161
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain
Specificity: Crystal Structure Of Human Very-Long-Chain
Acyl-Coa Dehydrogenase
Length = 587
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 33 VDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTD 92
V+P ++ + ND + + +E L + G+++P E GG GL
Sbjct: 38 VEPVSRFFEEVNDPAKNDALEMV-----EETTWQGLKELGAFGLQVPSELGGVGLCNTQY 92
Query: 93 ILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTD 141
+VE + D V I + ++ I+ GT QKEKYLP+LA +
Sbjct: 93 ARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGE 141
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 5 LGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKY 64
G+++P E GG GL +VE + D V I + ++ I+ GT QKEKY
Sbjct: 74 FGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKY 133
Query: 65 LPRLAQTD 72
LP+LA +
Sbjct: 134 LPKLASGE 141
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
pdb|3NF4|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
Length = 387
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
Query: 40 LVDIQNTLVNDLIIKLGTTEQKEKYLP-----RLAQTDLMGVEIPQEYGGPGLSFMTDIL 94
L+++ + + ++ + +K++ P +L L+ + P+E+GG G + +
Sbjct: 23 LIELTREIADKVLDPIVDRHEKDETYPEGVFEQLGAAGLLSLPQPEEWGGGGQPYEVYLQ 82
Query: 95 IVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLP 135
++EEIA SV++ V + + + L++ GT EQK+++LP
Sbjct: 83 VLEEIAARWASVAVAVSVHSLSSHPLLV-FGTEEQKKRWLP 122
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
LL + P+E+GG G + + ++EEIA SV++ V + + + L++ GT EQK++
Sbjct: 61 LLSLPQPEEWGGGGQPYEVYLQVLEEIAARWASVAVAVSVHSLSSHPLLV-FGTEEQKKR 119
Query: 64 YLPRLAQTDLMGV 76
+LP + + +G
Sbjct: 120 WLPGMLSGEQIGA 132
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
pdb|2PG0|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
Length = 385
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 9 IPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRL 68
+ ++YGG F ++I EE+ +V S+ + + + N +V I GT EQK+K+LP+
Sbjct: 60 VDEKYGGLNADFAYSVVINEELEKVGSSL-VGIGLHNDIVTPYIASYGTEEQKQKWLPKC 118
Query: 69 AQTDLM 74
+L+
Sbjct: 119 VTGELI 124
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 64 YLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIK 123
+ ++ + + + ++YGG F ++I EE+ +V S+ + + + N +V I
Sbjct: 46 FWAKMGENGFLCPWVDEKYGGLNADFAYSVVINEELEKVGSSL-VGIGLHNDIVTPYIAS 104
Query: 124 LGTTEQKEKYLPR 136
GT EQK+K+LP+
Sbjct: 105 YGTEEQKQKWLPK 117
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
pdb|1UKW|B Chain B, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
Length = 379
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 74/160 (46%), Gaps = 29/160 (18%)
Query: 65 LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDL---- 120
+ +L + L+ IP+EYGG GL + ++++ EE+A + + + +DL
Sbjct: 42 IEKLHEVGLLNAIIPEEYGGMGLKMLDEVIVGEELAYACMGIYTI-----PMASDLGITP 96
Query: 121 IIKLGTTEQKEKYL------PRLAQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHIS 174
++ GT EQKE++L P LA +S G A +T ++ DH ++
Sbjct: 97 VLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAAL-----KTRAIRQGDH--YVL 149
Query: 175 SGCVGFDGQLKRWMVSCGLSLQILQFQNLSSDMHMTGLAS 214
+G K W+ + G + ++ F ++ ++ G+ +
Sbjct: 150 NGT-------KMWISNGGEAEWVVVFATVNPELRHKGVVA 182
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 15/166 (9%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDL----IIKLGTTE 59
LL IP+EYGG GL + ++++ EE+A + + + +DL ++ GT E
Sbjct: 50 LLNAIIPEEYGGMGLKMLDEVIVGEELAYACMGIYTI-----PMASDLGITPVLLAGTEE 104
Query: 60 QKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSV--SILVDIQNTLV 117
QKE++L L + + E PG L I + D V + I N
Sbjct: 105 QKERFLRPLTEKPALAAFALSE---PGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGE 161
Query: 118 NDLIIKLGTTEQKEKYLPRLAQTDVSRTSRGYKALEWHAFYGRTDS 163
+ ++ T + ++ +A V R + G+KA++ H G+ S
Sbjct: 162 AEWVVVFATVNPELRHKGVVALV-VERGTPGFKAIKIHGKMGQRAS 206
>pdb|4DOY|A Chain A, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|B Chain B, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|C Chain C, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|D Chain D, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|E Chain E, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|F Chain F, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|G Chain G, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|H Chain H, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
Length = 437
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 18/125 (14%)
Query: 68 LAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL-GT 126
L + L+ + +P+EYGG G + T I +V EIA D S+ L L N +I+L G+
Sbjct: 72 LRASGLLSLLVPREYGGWGADWPTAIEVVREIAAADGSLGHLFGYH--LTNAPMIELIGS 129
Query: 127 TEQKEKYLPRLAQ----TDVSRTSRGYKALEWHAFYGRTDSLPLND------HLSHISSG 176
EQ+E ++AQ T + + L+W + + P D H SG
Sbjct: 130 QEQEEHLYTQIAQNNWWTGNASSENNSHVLDW-----KVSATPTEDGGYVLNGTKHFCSG 184
Query: 177 CVGFD 181
G D
Sbjct: 185 AKGSD 189
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL-GTTEQKE 62
LL + +P+EYGG G + T I +V EIA D S+ L L N +I+L G+ EQ+E
Sbjct: 77 LLSLLVPREYGGWGADWPTAIEVVREIAAADGSLGHLFGYH--LTNAPMIELIGSQEQEE 134
Query: 63 KYLPRLAQTD 72
++AQ +
Sbjct: 135 HLYTQIAQNN 144
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDD|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
Length = 385
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 65 LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
L R + LM IP+ +GG GL + LI EE+A V ++ NTL +I
Sbjct: 43 LKRAWELGLMNTHIPESFGGLGLGIIDSCLITEELAYGCTGVQTAIEA-NTLGQVPLIIG 101
Query: 125 GTTEQKEKYLPRLAQ 139
G +Q++KYL R+ +
Sbjct: 102 GNYQQQKKYLGRMTE 116
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
L+ IP+ +GG GL + LI EE+A V ++ NTL +I G +Q++K
Sbjct: 51 LMNTHIPESFGGLGLGIIDSCLITEELAYGCTGVQTAIEA-NTLGQVPLIIGGNYQQQKK 109
Query: 64 YLPRLAQTDLM 74
YL R+ + LM
Sbjct: 110 YLGRMTEEPLM 120
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|B Chain B, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|C Chain C, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|D Chain D, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
Length = 396
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 65 LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
L R + LM IP+ +GG GL + LI EE+A V ++ NTL +I
Sbjct: 53 LKRAWELGLMNTHIPESFGGLGLGIIDSCLITEELAYGCTGVQTAIEA-NTLGQVPLIIG 111
Query: 125 GTTEQKEKYLPRLAQ 139
G +Q++KYL R+ +
Sbjct: 112 GNYQQQKKYLGRMTE 126
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
L+ IP+ +GG GL + LI EE+A V ++ NTL +I G +Q++K
Sbjct: 61 LMNTHIPESFGGLGLGIIDSCLITEELAYGCTGVQTAIEA-NTLGQVPLIIGGNYQQQKK 119
Query: 64 YLPRLAQTDLM 74
YL R+ + LM
Sbjct: 120 YLGRMTEEPLM 130
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|B Chain B, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|C Chain C, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|D Chain D, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
Length = 399
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
+LG+ + Q YG G + ++ L E+ D V +Q +L I + G+ EQK +
Sbjct: 71 VLGMHL-QGYGCAGTNAVSYGLACMELEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQKNE 129
Query: 64 YLPRLAQTDLMGV 76
+LPRLA D +G
Sbjct: 130 WLPRLAAGDAIGC 142
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%)
Query: 80 QEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQ 139
Q YG G + ++ L E+ D V +Q +L I + G+ EQK ++LPRLA
Sbjct: 77 QGYGCAGTNAVSYGLACMELEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAA 136
Query: 140 TDV 142
D
Sbjct: 137 GDA 139
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|B Chain B, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|C Chain C, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|D Chain D, Structure Of The Human Mcad:etf E165betaa Complex
Length = 421
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
L+ IP+ GG GL LI EE+A V ++ N+L II G +QK+K
Sbjct: 86 LMNTHIPENCGGLGLGTFDACLISEELAYGCTGVQTAIE-GNSLGQMPIIIAGNDQQKKK 144
Query: 64 YLPRLAQTDLM 74
YL R+ + LM
Sbjct: 145 YLGRMTEEPLM 155
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 67 RLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGT 126
R + LM IP+ GG GL LI EE+A V ++ N+L II G
Sbjct: 80 RAWELGLMNTHIPENCGGLGLGTFDACLISEELAYGCTGVQTAIE-GNSLGQMPIIIAGN 138
Query: 127 TEQKEKYLPRLAQ 139
+QK+KYL R+ +
Sbjct: 139 DQQKKKYLGRMTE 151
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGC|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
Length = 396
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
L+ IP+ GG GL LI EE+A V ++ N+L II G +QK+K
Sbjct: 61 LMNTHIPENCGGLGLGTFDACLISEELAYGCTGVQTAIE-GNSLGQMPIIIAGNDQQKKK 119
Query: 64 YLPRLAQTDLM 74
YL R+ + LM
Sbjct: 120 YLGRMTEEPLM 130
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 67 RLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGT 126
R + LM IP+ GG GL LI EE+A V ++ N+L II G
Sbjct: 55 RAWELGLMNTHIPENCGGLGLGTFDACLISEELAYGCTGVQTAIE-GNSLGQMPIIIAGN 113
Query: 127 TEQKEKYLPRLAQ 139
+QK+KYL R+ +
Sbjct: 114 DQQKKKYLGRMTE 126
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1T9G|A Chain A, Structure Of The Human Mcad:etf Complex
pdb|1T9G|B Chain B, Structure Of The Human Mcad:etf Complex
pdb|1T9G|C Chain C, Structure Of The Human Mcad:etf Complex
pdb|1T9G|D Chain D, Structure Of The Human Mcad:etf Complex
Length = 396
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
L+ IP+ GG GL LI EE+A V ++ N+L II G +QK+K
Sbjct: 61 LMNTHIPENCGGLGLGTFDACLISEELAYGCTGVQTAIE-GNSLGQMPIIIAGNDQQKKK 119
Query: 64 YLPRLAQTDLM 74
YL R+ + LM
Sbjct: 120 YLGRMTEEPLM 130
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 67 RLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGT 126
R + LM IP+ GG GL LI EE+A V ++ N+L II G
Sbjct: 55 RAWELGLMNTHIPENCGGLGLGTFDACLISEELAYGCTGVQTAIE-GNSLGQMPIIIAGN 113
Query: 127 TEQKEKYLPRLAQ 139
+QK+KYL R+ +
Sbjct: 114 DQQKKKYLGRMTE 126
>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|B Chain B, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|C Chain C, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|D Chain D, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND
Length = 393
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 59 EQKEKY----LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQN 114
+QKE + + + AQ GV I + GG GLS + +I E +A S + + I N
Sbjct: 46 DQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATGCTSTTAYISIHN 105
Query: 115 TLVNDLIIKLGTTEQKEKYLPRLA 138
+ +I G EQ+ K+ P L
Sbjct: 106 -MCAWMIDSFGNEEQRHKFCPPLC 128
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 6 GVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYL 65
GV I + GG GLS + +I E +A S + + I N + +I G EQ+ K+
Sbjct: 66 GVYIQTDVGGSGLSRLDTSVIFEALATGCTSTTAYISIHN-MCAWMIDSFGNEEQRHKFC 124
Query: 66 PRLA 69
P L
Sbjct: 125 PPLC 128
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis
Length = 403
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
LLG+ + + YG G+S + L E+ D + LV +Q +L I G+ EQK++
Sbjct: 76 LLGMHL-KGYGCAGMSAVAYGLACLELEAGDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQ 134
Query: 64 YLPRLAQTDLMGV 76
+LP +A +G
Sbjct: 135 WLPDMASGHRIGC 147
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 68 LAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTT 127
L + L+G+ + + YG G+S + L E+ D + LV +Q +L I G+
Sbjct: 71 LGELGLLGMHL-KGYGCAGMSAVAYGLACLELEAGDSGIRSLVSVQGSLAMYAIHAFGSD 129
Query: 128 EQKEKYLPRLA 138
EQK+++LP +A
Sbjct: 130 EQKDQWLPDMA 140
>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
pdb|1BUC|B Chain B, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
Length = 383
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 24 ILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLMGV 76
IL VEE+A+ D V+I + +L + I + GT QKEK+L L + +G
Sbjct: 73 ILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGA 125
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 93 ILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQ 139
IL VEE+A+ D V+I + +L + I + GT QKEK+L L +
Sbjct: 73 ILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVE 119
>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|B Chain B, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|C Chain C, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|D Chain D, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
Length = 845
Score = 30.4 bits (67), Expect = 0.84, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 18/114 (15%)
Query: 84 GPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDVS 143
G GLS+ T L + + D ++I VD++NT D K +E + Y L + VS
Sbjct: 715 GYGLSYTTFELDISDFKVTDDKIAISVDVKNT--GD---KFAGSEVVQVYFSAL-NSKVS 768
Query: 144 RTSRGYKALE-WHAFYGRTDS----LPLNDHLSHISSGCVGFDGQLKRWMVSCG 192
R + K E H G + L L D +S+ F+ +L +W V G
Sbjct: 769 RPVKELKGFEKVHLEPGEKKTVNIDLELKDAISY-------FNEELGKWHVEAG 815
>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|B Chain B, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|C Chain C, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|D Chain D, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
Length = 845
Score = 30.0 bits (66), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 18/114 (15%)
Query: 84 GPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDVS 143
G GLS+ T L + + D ++I VD++NT D K +E + Y L + VS
Sbjct: 715 GYGLSYTTFELDISDFKVTDDKIAISVDVKNT--GD---KFAGSEVVQVYFSAL-NSKVS 768
Query: 144 RTSRGYKALEW-HAFYGRTDS----LPLNDHLSHISSGCVGFDGQLKRWMVSCG 192
R + K E H G + L L D +S+ F+ +L +W V G
Sbjct: 769 RPVKELKGFEKVHLEPGEKKTVNIDLELKDAISY-------FNEELGKWHVEAG 815
>pdb|3K25|A Chain A, Crystal Structure Of Slr1438 Protein From Synechocystis
Sp. Pcc 6803, Northeast Structural Genomics Consortium
Target Sgr112
pdb|3K25|B Chain B, Crystal Structure Of Slr1438 Protein From Synechocystis
Sp. Pcc 6803, Northeast Structural Genomics Consortium
Target Sgr112
Length = 289
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 159 GRTDSLPLNDHLSHISSGCVGFDGQLK 185
G T ++P ND+L + C G+DGQL
Sbjct: 174 GITLAIPANDYLDQKTGDCHGYDGQLN 200
>pdb|3MXL|A Chain A, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|B Chain B, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|C Chain C, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|D Chain D, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
Length = 395
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 67 RLAQTDLMGVEIPQEYGGPGLSFMTDIL-IVEEIARVDPSVSILVDIQ 113
+ A+ LMG +P E GG GL+ + D+ + +A D S ++ +Q
Sbjct: 47 QFAKLGLMGATVPAELGGLGLTRLYDVATALMRLAEADASTALAWHVQ 94
>pdb|2C0U|A Chain A, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|B Chain B, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|C Chain C, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|D Chain D, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
Length = 439
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 12/95 (12%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
L+ ++P GG S + + +I+EE+ V+P+ SI + + L +I + +EK
Sbjct: 57 LIKAQVPIPLGGTXESLVHESIILEELFAVEPATSITI-VATALGLXPVILCDSPSLQEK 115
Query: 64 Y-----------LPRLAQTDLMGVEIPQEYGGPGL 87
+ L L ++ G + GGPGL
Sbjct: 116 FLKPFISGEGEPLASLXHSEPNGTANWLQKGGPGL 150
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 73 LMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 132
L+ ++P GG S + + +I+EE+ V+P+ SI + + L +I + +EK
Sbjct: 57 LIKAQVPIPLGGTXESLVHESIILEELFAVEPATSITI-VATALGLXPVILCDSPSLQEK 115
Query: 133 YL 134
+L
Sbjct: 116 FL 117
>pdb|4B0T|A Chain A, Structure Of The Pup Ligase Pafa Of The Prokaryotic
Ubiquitin-Like Modification Pathway In Complex With Adp
pdb|4B0T|B Chain B, Structure Of The Pup Ligase Pafa Of The Prokaryotic
Ubiquitin-Like Modification Pathway In Complex With Adp
Length = 493
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 2 TTLLGVE-IPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQN-TLVNDLIIKLGTTE 59
+TLL +E I ++G P L DI + EI+R D + S L+ +++ T + L I+ E
Sbjct: 240 STLLVLEMIEADFGLPSLELANDIASIREISR-DATGSTLLSLKDGTTMTALQIQQVVFE 298
Query: 60 QKEKYLPRLAQTDLMG 75
K+L + + + G
Sbjct: 299 HASKWLEQRPEPEFSG 314
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 78 IPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQN-TLVNDLIIKLGTTEQKEKYLPR 136
I ++G P L DI + EI+R D + S L+ +++ T + L I+ E K+L +
Sbjct: 248 IEADFGLPSLELANDIASIREISR-DATGSTLLSLKDGTTMTALQIQQVVFEHASKWLEQ 306
Query: 137 LAQTDVSRTS 146
+ + S TS
Sbjct: 307 RPEPEFSGTS 316
>pdb|3T2L|A Chain A, Crystal Structure Of A Putative Cell Adhesion Protein
(Bf1858) From Bacteroides Fragilis Nctc 9343 At 2.33 A
Resolution
Length = 308
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 105 SVSILVDIQNTLVNDLIIKLGTTEQKEKYLP--RLAQTDVSRTSRGYKALEWH 155
SVS+++D Q LV +LG Q EKY+ ++ T++ T KALEW
Sbjct: 246 SVSLVIDGQQXLVEIPYSELGEFRQGEKYVIGLKIKGTEIVPT---VKALEWE 295
>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|B Chain B, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|C Chain C, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|D Chain D, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 403
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 69 AQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDI 112
A+ L+G+ P+E GG G + + L+ E I S + +
Sbjct: 70 AEVGLLGIGFPEEVGGSGGNAIDSALVTEAILAAGGSTGVCAAL 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,298,274
Number of Sequences: 62578
Number of extensions: 248689
Number of successful extensions: 730
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 619
Number of HSP's gapped (non-prelim): 101
length of query: 216
length of database: 14,973,337
effective HSP length: 95
effective length of query: 121
effective length of database: 9,028,427
effective search space: 1092439667
effective search space used: 1092439667
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)