Query psy5139
Match_columns 216
No_of_seqs 234 out of 2283
Neff 10.3
Searched_HMMs 46136
Date Fri Aug 16 18:19:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5139.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5139hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0139|consensus 100.0 1.3E-33 2.9E-38 213.7 -5.1 199 2-216 80-328 (398)
2 KOG0140|consensus 100.0 1.7E-32 3.7E-37 204.9 -2.4 198 2-216 71-322 (408)
3 KOG0141|consensus 100.0 2.4E-32 5.3E-37 204.3 -3.6 198 2-215 86-336 (421)
4 TIGR03203 pimD_small pimeloyl- 99.9 2.5E-26 5.3E-31 185.8 -3.9 196 2-216 49-294 (378)
5 TIGR03204 pimC_large pimeloyl- 99.9 3.9E-24 8.4E-29 174.1 -1.1 195 2-216 52-296 (395)
6 PRK13026 acyl-CoA dehydrogenas 99.8 2.8E-23 6E-28 177.8 -3.6 201 2-215 120-389 (774)
7 PRK09463 fadE acyl-CoA dehydro 99.8 4.9E-23 1.1E-27 176.8 -2.9 198 2-214 121-386 (777)
8 TIGR03207 cyc_hxne_CoA_dh cycl 99.8 1.1E-22 2.5E-27 164.5 -3.8 197 2-215 44-291 (372)
9 cd01156 IVD Isovaleryl-CoA deh 99.8 1.7E-22 3.7E-27 163.7 -3.7 198 2-215 45-293 (376)
10 cd01157 MCAD Medium chain acyl 99.8 1.7E-22 3.6E-27 163.9 -4.5 197 2-215 44-294 (378)
11 PRK03354 crotonobetainyl-CoA d 99.8 2.5E-22 5.4E-27 162.9 -4.8 197 2-216 49-295 (380)
12 PTZ00461 isovaleryl-CoA dehydr 99.8 2.8E-22 6E-27 164.1 -4.8 198 2-215 80-324 (410)
13 PLN02519 isovaleryl-CoA dehydr 99.8 4E-22 8.8E-27 162.8 -4.0 198 2-215 71-319 (404)
14 PTZ00457 acyl-CoA dehydrogenas 99.8 6.5E-22 1.4E-26 163.5 -3.0 186 3-216 64-293 (520)
15 cd01151 GCD Glutaryl-CoA dehyd 99.8 7.6E-22 1.6E-26 160.4 -3.8 196 2-215 56-299 (386)
16 cd01161 VLCAD Very long chain 99.8 1.2E-21 2.6E-26 160.3 -3.9 197 2-215 68-321 (409)
17 cd01152 ACAD_fadE6_17_26 Putat 99.8 1E-20 2.2E-25 153.5 -0.0 196 2-215 47-289 (380)
18 PTZ00456 acyl-CoA dehydrogenas 99.8 1.9E-21 4.1E-26 164.9 -4.6 197 2-215 111-383 (622)
19 cd01155 ACAD_FadE2 Acyl-CoA de 99.8 9.4E-22 2E-26 160.2 -6.4 199 2-216 53-310 (394)
20 KOG0137|consensus 99.8 1.9E-21 4.2E-26 157.0 -4.8 196 2-213 121-373 (634)
21 cd01162 IBD Isobutyryl-CoA deh 99.8 2.9E-21 6.2E-26 156.5 -4.3 197 2-215 44-290 (375)
22 cd01160 LCAD Long chain acyl-C 99.8 4.1E-21 8.8E-26 155.5 -3.9 197 2-215 42-290 (372)
23 PRK12341 putative acyl-CoA deh 99.8 3.7E-21 7.9E-26 156.2 -4.7 195 2-215 49-295 (381)
24 COG1960 CaiA Acyl-CoA dehydrog 99.8 3.4E-21 7.4E-26 157.0 -6.0 199 2-216 51-306 (393)
25 PLN02876 acyl-CoA dehydrogenas 99.8 1.5E-20 3.4E-25 165.2 -5.2 199 2-216 454-734 (822)
26 PLN02526 acyl-coenzyme A oxida 99.7 2.4E-20 5.2E-25 152.7 -4.5 196 2-215 72-315 (412)
27 cd01158 SCAD_SBCAD Short chain 99.7 1.2E-19 2.6E-24 147.0 -3.9 198 2-215 42-290 (373)
28 cd01153 ACAD_fadE5 Putative ac 99.7 4.3E-19 9.4E-24 145.2 -2.2 196 2-215 48-310 (407)
29 KOG0138|consensus 99.7 1.2E-18 2.7E-23 130.8 -2.1 197 2-212 98-340 (432)
30 KOG0139|consensus 99.7 1.8E-16 3.9E-21 121.2 8.6 122 59-180 68-195 (398)
31 cd01163 DszC Dibenzothiophene 99.7 9.9E-19 2.1E-23 141.8 -4.4 196 2-215 34-279 (377)
32 KOG0141|consensus 99.6 8.1E-16 1.8E-20 116.1 9.1 121 60-180 75-202 (421)
33 cd01154 AidB Proteins involved 99.6 2.1E-18 4.7E-23 141.4 -5.3 194 2-216 77-328 (418)
34 PRK11561 isovaleryl CoA dehydr 99.6 5E-18 1.1E-22 141.4 -4.6 194 2-215 98-352 (538)
35 KOG0140|consensus 99.6 2.8E-15 6E-20 113.1 6.6 125 55-180 55-186 (408)
36 PLN02636 acyl-coenzyme A oxida 99.5 8.6E-17 1.9E-21 138.0 -5.6 196 2-215 108-393 (686)
37 PLN02312 acyl-CoA oxidase 99.5 3E-16 6.6E-21 134.4 -5.6 199 2-215 117-399 (680)
38 KOG1469|consensus 99.4 7.5E-16 1.6E-20 114.3 -10.1 202 2-216 39-298 (392)
39 PF02771 Acyl-CoA_dh_N: Acyl-C 99.4 8.9E-13 1.9E-17 88.8 5.0 71 2-72 43-113 (113)
40 cd01159 NcnH Naphthocyclinone 99.3 1.3E-14 2.8E-19 117.6 -7.7 195 2-215 34-278 (370)
41 cd01151 GCD Glutaryl-CoA dehyd 99.3 3.3E-12 7.2E-17 104.1 5.6 121 59-180 44-171 (386)
42 PRK09463 fadE acyl-CoA dehydro 99.3 7.4E-12 1.6E-16 108.5 5.7 123 58-180 108-246 (777)
43 TIGR03203 pimD_small pimeloyl- 99.2 1.3E-11 2.7E-16 100.3 6.5 122 57-180 35-163 (378)
44 PLN02519 isovaleryl-CoA dehydr 99.2 1.5E-11 3.3E-16 100.8 7.0 118 63-180 63-187 (404)
45 PRK13026 acyl-CoA dehydrogenas 99.2 8.8E-12 1.9E-16 107.8 5.7 124 57-180 106-245 (774)
46 TIGR03204 pimC_large pimeloyl- 99.2 2.8E-11 6.1E-16 98.8 7.9 116 63-180 44-166 (395)
47 cd01156 IVD Isovaleryl-CoA deh 99.2 1E-11 2.2E-16 100.9 5.1 122 59-180 33-161 (376)
48 TIGR03207 cyc_hxne_CoA_dh cycl 99.2 1.3E-11 2.7E-16 100.2 5.5 122 58-180 31-159 (372)
49 PRK03354 crotonobetainyl-CoA d 99.2 1.6E-11 3.5E-16 99.8 6.0 120 59-180 37-163 (380)
50 cd01157 MCAD Medium chain acyl 99.2 1.6E-11 3.4E-16 99.9 5.0 121 59-180 32-159 (378)
51 cd01152 ACAD_fadE6_17_26 Putat 99.2 8.3E-11 1.8E-15 95.7 8.9 122 58-180 34-162 (380)
52 cd01162 IBD Isobutyryl-CoA deh 99.2 2.1E-11 4.6E-16 99.0 5.1 121 59-180 32-159 (375)
53 cd01155 ACAD_FadE2 Acyl-CoA de 99.2 9.8E-11 2.1E-15 95.7 9.0 121 58-178 40-169 (394)
54 cd01160 LCAD Long chain acyl-C 99.2 2.2E-11 4.9E-16 98.7 5.1 121 59-180 30-157 (372)
55 PTZ00461 isovaleryl-CoA dehydr 99.2 2.8E-11 6.1E-16 99.4 5.6 122 59-180 68-197 (410)
56 cd01163 DszC Dibenzothiophene 99.2 2.4E-11 5.2E-16 98.7 4.8 121 58-180 21-147 (377)
57 PRK12341 putative acyl-CoA deh 99.2 5.2E-11 1.1E-15 96.9 6.5 120 58-180 36-163 (381)
58 cd01150 AXO Peroxisomal acyl-C 99.2 2.7E-13 5.9E-18 115.7 -7.3 184 19-214 80-348 (610)
59 KOG0138|consensus 99.2 7.5E-11 1.6E-15 89.3 6.2 132 48-180 75-215 (432)
60 PLN02526 acyl-coenzyme A oxida 99.1 6.3E-11 1.4E-15 97.3 5.8 121 59-180 60-187 (412)
61 cd01161 VLCAD Very long chain 99.1 1.1E-10 2.3E-15 96.0 5.1 121 59-180 56-185 (409)
62 cd01158 SCAD_SBCAD Short chain 99.1 1.3E-10 2.8E-15 94.3 5.4 122 59-180 30-158 (373)
63 COG1960 CaiA Acyl-CoA dehydrog 99.0 9.6E-10 2.1E-14 89.9 8.4 124 57-180 37-171 (393)
64 PTZ00456 acyl-CoA dehydrogenas 99.0 4.2E-10 9.1E-15 96.3 5.9 116 62-178 102-225 (622)
65 PTZ00457 acyl-CoA dehydrogenas 99.0 7.9E-10 1.7E-14 92.3 7.2 108 72-180 64-178 (520)
66 KOG0137|consensus 99.0 8.2E-10 1.8E-14 90.5 6.5 122 59-180 109-239 (634)
67 cd01153 ACAD_fadE5 Putative ac 99.0 6.1E-10 1.3E-14 91.4 5.8 116 62-179 39-162 (407)
68 PTZ00460 acyl-CoA dehydrogenas 98.9 3.1E-12 6.6E-17 109.5 -10.1 158 42-215 96-336 (646)
69 cd01159 NcnH Naphthocyclinone 98.9 2.2E-09 4.9E-14 87.0 4.5 116 57-180 20-136 (370)
70 PLN02876 acyl-CoA dehydrogenas 98.8 6.5E-09 1.4E-13 92.3 6.8 116 62-177 444-593 (822)
71 PF02771 Acyl-CoA_dh_N: Acyl-C 98.6 6.4E-09 1.4E-13 69.9 0.5 82 59-140 31-112 (113)
72 cd00567 ACAD Acyl-CoA dehydrog 98.6 3.8E-10 8.1E-15 89.9 -8.2 153 47-215 43-247 (327)
73 PLN02636 acyl-coenzyme A oxida 98.5 2.1E-07 4.5E-12 80.7 7.1 114 59-178 95-223 (686)
74 KOG1469|consensus 98.5 9.9E-08 2.2E-12 71.6 4.4 127 54-180 22-159 (392)
75 PLN02312 acyl-CoA oxidase 98.4 9.5E-07 2E-11 76.6 7.0 115 59-176 105-233 (680)
76 cd01154 AidB Proteins involved 98.4 1.9E-06 4.2E-11 71.1 8.4 112 62-180 68-192 (418)
77 PLN02443 acyl-coenzyme A oxida 98.3 2.1E-09 4.6E-14 92.5 -9.8 46 43-88 101-147 (664)
78 PF02770 Acyl-CoA_dh_M: Acyl-C 97.5 0.00012 2.7E-09 41.7 2.9 39 142-180 4-43 (52)
79 PRK11561 isovaleryl CoA dehydr 97.4 0.00051 1.1E-08 58.3 7.1 112 63-180 90-223 (538)
80 cd01150 AXO Peroxisomal acyl-C 97.4 0.00047 1E-08 59.7 6.6 89 89-177 81-183 (610)
81 PTZ00460 acyl-CoA dehydrogenas 96.6 0.0035 7.6E-08 54.6 4.8 61 115-175 100-174 (646)
82 cd00567 ACAD Acyl-CoA dehydrog 96.5 0.003 6.5E-08 50.3 3.6 64 117-180 44-114 (327)
83 PLN02443 acyl-coenzyme A oxida 96.2 0.0078 1.7E-07 52.7 5.0 65 112-176 101-179 (664)
84 PF00441 Acyl-CoA_dh_1: Acyl-C 94.8 0.00022 4.8E-09 50.0 -7.9 56 146-215 1-68 (150)
85 PF14749 Acyl-CoA_ox_N: Acyl-c 90.5 0.51 1.1E-05 32.0 4.1 32 42-73 93-124 (125)
86 KOG0135|consensus 77.3 6.5 0.00014 33.7 5.3 68 21-89 105-173 (661)
87 KOG0136|consensus 66.9 6 0.00013 34.5 3.0 53 38-90 108-161 (670)
88 KOG0135|consensus 63.2 7.2 0.00016 33.4 2.7 89 91-180 106-208 (661)
89 TIGR02309 HpaB-1 4-hydroxyphen 43.0 3.1 6.7E-05 35.3 -2.5 26 190-215 310-338 (477)
90 TIGR02309 HpaB-1 4-hydroxyphen 33.1 15 0.00033 31.2 0.2 19 161-180 175-193 (477)
91 PHA02095 hypothetical protein 21.3 1E+02 0.0022 18.6 2.1 36 161-204 26-61 (84)
No 1
>KOG0139|consensus
Probab=99.97 E-value=1.3e-33 Score=213.74 Aligned_cols=199 Identities=33% Similarity=0.490 Sum_probs=168.1
Q ss_pred CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCceeeecCCC
Q psy5139 2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLMGVEIPQE 81 (216)
Q Consensus 2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~e~ 81 (216)
+|++++.+|++|||.|.++...+++.||+++.+++++..+.+++.+..++|..||+++||+.++|.+...-.-+++++||
T Consensus 80 ~Glmgv~vpeeyGGsG~df~~~~~v~EEisk~d~sv~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~~~d~vgsfAlSEp 159 (398)
T KOG0139|consen 80 LGLMGVEVPEEYGGSGLDFFAAAIVIEEISKVDASVGVIVDVQNTLYLPLIIQFGTEEQKEKYLPKLTGDLVGSFALSEP 159 (398)
T ss_pred cCcceeecChhhCCCchhHHHHHHHHHHHhccCccceeEEEecccccchHHHHhCcHHHHhhhcchhhccccceeeecCC
Confidence 69999999999999999999999999999999999999888888899999999999999998888876444457899999
Q ss_pred CCCCCccHHH-------------------------HHHHHHHHHhhCCC------ceeEeeechh--hhHHHHHhcCCH-
Q psy5139 82 YGGPGLSFMT-------------------------DILIVEEIARVDPS------VSILVDIQNT--LVNDLIIKLGTT- 127 (216)
Q Consensus 82 ~gG~~~~~~~-------------------------~~~v~e~lar~~~~------~~~~v~~~~~--~~~~~~~~~g~~- 127 (216)
..|||..... ++.++ ++.+|++ +.|+|+.+.. ....+..++|.+
T Consensus 160 gaGSDa~A~~T~Ak~~Gd~~viNGsKmWItN~~~A~~~lV--fan~d~~~~~Kgit~fiV~rd~~Gl~~~k~eDKLGmRa 237 (398)
T KOG0139|consen 160 GAGSDAFALKTTAKKDGDDYVINGSKMWITNAGEADWFLV--FANADPSKGYKGITCFIVPRDTPGLSLGKKEDKLGMRA 237 (398)
T ss_pred CCCcchHHhhhhHhhcCCeEEEecceeeecCCcccceEEE--EEecChhhccCceeEEEeeCCCCCcccCCccccccccc
Confidence 9999985322 23333 5544443 3488887653 445667888887
Q ss_pred -HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeecc---------cc
Q psy5139 128 -EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSCG---------LS 194 (216)
Q Consensus 128 -~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~~---------fg 194 (216)
..+..+|+++ .++.+|++|.|++.....++.+| +.+++..+|. +|.+++.+ ||
T Consensus 238 SsTcql~fedVrVpks~IlGe~G~GykyAm~~Ln~gR----------Igi~Aqmlgl----aQ~c~d~tI~Y~q~R~~FG 303 (398)
T KOG0139|consen 238 SSTCQLHFEDVRVPKSSILGEYGKGYKYAIEVLNAGR----------IGIGAQMLGL----AQGCFDETIPYAQERLQFG 303 (398)
T ss_pred cceeeEEeccccccchhhcccCCcchHHHHHhcCccc----------eeehhhhhhh----hHhHHHhhhHHHHHHHHhc
Confidence 4466788886 57899999999999999988888 9999999999 88888765 99
Q ss_pred ceeeeeeccc---ccccccccccCC
Q psy5139 195 LQILQFQNLS---SDMHMTGLASRF 216 (216)
Q Consensus 195 ~~i~~~Q~v~---ad~~~~~~~~r~ 216 (216)
++|.+||.+| |||.+++|++|+
T Consensus 304 k~l~d~Q~iQhqiA~~~teiEaaRl 328 (398)
T KOG0139|consen 304 KRLLDFQGLQHQIADMATEIEAARL 328 (398)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999995
No 2
>KOG0140|consensus
Probab=99.97 E-value=1.7e-32 Score=204.90 Aligned_cols=198 Identities=23% Similarity=0.336 Sum_probs=167.9
Q ss_pred CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139 2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ 80 (216)
Q Consensus 2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e 80 (216)
+|+.+..+|++|||.|++.++.+++.|++++.|.++...+..|. ++..++..+|+++||+++++++++..++ ++|++|
T Consensus 71 lG~~~~~ip~~~GG~Gls~l~t~lI~E~LayGCtg~~~~I~~~~-l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTE 149 (408)
T KOG0140|consen 71 LGFMNTYIPEDYGGLGLSRLDTCLIFEALAYGCTGIQTAISIHN-LAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTE 149 (408)
T ss_pred cccCcccCccccCCCCchhHHHHHHHHHHHccchhHHHHHhccc-hhhhhehhcCcHHHHHhhhhhhhcchhhhhhhccC
Confidence 69999999999999999999999999999999998877666554 7888899999999999999999999987 589999
Q ss_pred CCCCCCccHHH-------------------------HHHHHHHHHhhCCC---------ceeEeeechh--hhHHHHHhc
Q psy5139 81 EYGGPGLSFMT-------------------------DILIVEEIARVDPS---------VSILVDIQNT--LVNDLIIKL 124 (216)
Q Consensus 81 ~~gG~~~~~~~-------------------------~~~v~e~lar~~~~---------~~~~v~~~~~--~~~~~~~~~ 124 (216)
|..|||+..+. .+.++ ++|+|+. ++|.|+.+++ .......++
T Consensus 150 PgAGSDvagikTka~KkGDeYiiNGsKawItg~G~anwyfV--laRtd~~pk~p~~Kaft~fiVe~dTpGlt~GkKE~nm 227 (408)
T KOG0140|consen 150 PGAGSDVAGIKTKAEKKGDEYIINGSKAWITGAGHANWYFV--LARTDPDPKTPAGKAFTAFIVEGDTPGLTRGKKEKNM 227 (408)
T ss_pred CCCCcchhhhhhhhhhcCCEEEEcCceeeeecCCccceEEE--EEecCCCCCCCCCcceEEEEEeCCCCCcCcChhhhcc
Confidence 99999986332 44555 8998873 3477877654 344566788
Q ss_pred CCHHHhhh--hchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeecc-------
Q psy5139 125 GTTEQKEK--YLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSCG------- 192 (216)
Q Consensus 125 g~~~~~~~--~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~~------- 192 (216)
|.+.+.++ .|+++ .+|.||.++.||++.+..++.+| ..|++.++|. ++++++++
T Consensus 228 Gqr~sdTR~itFEDvrVP~~Nvlg~~G~GFkvAm~~fd~tR----------p~vAa~alG~----A~r~ld~a~ky~~eR 293 (408)
T KOG0140|consen 228 GQRCSDTRGITFEDVRVPKENVLGAPGAGFKVAMGGFDKTR----------PNVAAGALGL----AQRCLDEATKYALER 293 (408)
T ss_pred cccCCCCceeeeeecccchhccccCCCccceehhhhccCCC----------CchhhhhhHH----HHHHHHHHHHHHHHH
Confidence 88866554 56664 68999999999999888877777 9999999999 88888654
Q ss_pred --ccceeeeeeccc---ccccccccccCC
Q psy5139 193 --LSLQILQFQNLS---SDMHMTGLASRF 216 (216)
Q Consensus 193 --fg~~i~~~Q~v~---ad~~~~~~~~r~ 216 (216)
||+||++||+|| |||++.+|.+||
T Consensus 294 K~FG~~iA~hQ~vqF~LAdMA~~le~aRL 322 (408)
T KOG0140|consen 294 KAFGTPIANHQAVQFMLADMAINLELARL 322 (408)
T ss_pred HHhCcChhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999986
No 3
>KOG0141|consensus
Probab=99.96 E-value=2.4e-32 Score=204.27 Aligned_cols=198 Identities=27% Similarity=0.405 Sum_probs=170.9
Q ss_pred CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139 2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ 80 (216)
Q Consensus 2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e 80 (216)
.|++|++.|++|||.|++....+++.||++|+...+++.++.|+.++...|.+.|+++|+++|+|++.+|+.+ +++++|
T Consensus 86 ~gllGita~~~~GG~G~~y~~h~ivmEE~sra~g~v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalAMsE 165 (421)
T KOG0141|consen 86 QGLLGITAPEEYGGSGGGYLSHCIVMEEISRASGGVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAMSE 165 (421)
T ss_pred cCcccccchhhhCCCchhHHHHHHHHHHHHhhcCCcccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceeeecC
Confidence 5899999999999999999999999999999998888888888889999999999999999999999999987 689999
Q ss_pred CCCCCCccH-------------------------HHHHHHHHHHHhhCCC--------ceeEeeechh--hhHHHHHhcC
Q psy5139 81 EYGGPGLSF-------------------------MTDILIVEEIARVDPS--------VSILVDIQNT--LVNDLIIKLG 125 (216)
Q Consensus 81 ~~gG~~~~~-------------------------~~~~~v~e~lar~~~~--------~~~~v~~~~~--~~~~~~~~~g 125 (216)
|..|||+-. ..+++|+ .|.++.+ ++|+|+.... .....+.++|
T Consensus 166 p~AGSDvv~mK~~Aek~g~~yiLNGsK~witNG~~advliV--yAkTd~~a~~~~hGIt~FiVEkgm~GFs~~~KLdKlG 243 (421)
T KOG0141|consen 166 PGAGSDVVSMKLKAEKKGDDYILNGSKFWITNGPDADVLIV--YAKTDHSAVPPSHGITAFIVEKGMPGFSTAQKLDKLG 243 (421)
T ss_pred CCCCCccceeeeeceecCCcEEecCcEEEEecCCCCcEEEE--EEecCCCCCCCcCceEEEEEcCCCcccccchhhHhhc
Confidence 999999742 2255565 7777654 3488876542 5567788888
Q ss_pred CH--HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeecc--------
Q psy5139 126 TT--EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSCG-------- 192 (216)
Q Consensus 126 ~~--~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~~-------- 192 (216)
.+ ..++.+|++. +++++|+++.|+-.++.-+..+| +.++++.+|. ++++++.+
T Consensus 244 mrgsdTcELvFed~~vpas~ilg~enkGvYvlMsgLd~ER----------Lvla~gplgl----mqa~~d~~~~Y~~qR~ 309 (421)
T KOG0141|consen 244 MRGSDTCELVFEDCKVPASNILGEENKGVYVLMSGLDLER----------LVLAAGPLGL----MQAALDETFPYAHQRK 309 (421)
T ss_pred CCCCcchheehhhccCcHHHhcCcCCceEEEEecCCChhH----------hhhccCchHH----HHHHHHHhhhHHHHHH
Confidence 87 4567788874 67899999999999999999999 9999999999 88888765
Q ss_pred -ccceeeeeeccc---ccccccccccC
Q psy5139 193 -LSLQILQFQNLS---SDMHMTGLASR 215 (216)
Q Consensus 193 -fg~~i~~~Q~v~---ad~~~~~~~~r 215 (216)
||++|++||.+| |||++.+-++|
T Consensus 310 afgk~ig~fQ~~QgklAdmyT~l~a~R 336 (421)
T KOG0141|consen 310 AFGKKIGHFQLLQGKLADMYTTLCASR 336 (421)
T ss_pred HhCCchhHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999 99999988776
No 4
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=99.90 E-value=2.5e-26 Score=185.83 Aligned_cols=196 Identities=17% Similarity=0.217 Sum_probs=148.0
Q ss_pred CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139 2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ 80 (216)
Q Consensus 2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e 80 (216)
+||+++.+|++|||.|++..+.+++.||+++.+.+.+. +.. ..+....+..+|+++|+++|++++.+|+.+ +++++|
T Consensus 49 ~G~~~l~vPe~~GG~G~~~~~~~~v~eel~~~~~~~~~-~~~-~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tE 126 (378)
T TIGR03203 49 QGLLGLPFSEADGGFGAGSVETMIVMEALGKALVLEPY-LAT-VVIGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLE 126 (378)
T ss_pred CCCcccccchhcCCCCCCHHHHHHHHHHHhCcccchHH-HHH-HHHHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecC
Confidence 69999999999999999999999999999998766553 222 224455788899999999999999999864 789999
Q ss_pred CCCCCCccHH-------------------------HHHHHHHHHHhhCC------Cce-eEeeechh-hhHHHH-HhcCC
Q psy5139 81 EYGGPGLSFM-------------------------TDILIVEEIARVDP------SVS-ILVDIQNT-LVNDLI-IKLGT 126 (216)
Q Consensus 81 ~~gG~~~~~~-------------------------~~~~v~e~lar~~~------~~~-~~v~~~~~-~~~~~~-~~~g~ 126 (216)
|.+|+|...+ .+.+++ ++|+++ +++ |+|+.+.+ +..... .+.|.
T Consensus 127 p~~gsd~~~~~t~a~~~g~~~~l~G~K~~vt~a~~Ad~~lv--~ar~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~g~ 204 (378)
T TIGR03203 127 KNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNGETADTLIV--TARTKGARRDRTGIGVFLVPAGAKGVTIKGYPTQDGL 204 (378)
T ss_pred CCCCCCcccceEEEEEcCCEEEEEeEEEEecCCccCCEEEE--EEecCCCCCCCCceEEEEEECCCCCceeccccccCCC
Confidence 9988875321 133444 566531 233 77876543 222222 22343
Q ss_pred HHHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------ccc
Q psy5139 127 TEQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GLS 194 (216)
Q Consensus 127 ~~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~fg 194 (216)
...+.+|+++ .++++|.++.|++.+...++..| ..+++..+|. ++++++. +||
T Consensus 205 -~~~~l~fd~v~vp~~~~lg~~~~g~~~~~~~l~~~r----------~~~aa~~~G~----a~~al~~a~~ya~~R~qFG 269 (378)
T TIGR03203 205 -HAADITFTGVVVGADAAIGDPENALPLIERVVDDAR----------AALCAEAVGL----MDESLKTTVEYIKTRKQFG 269 (378)
T ss_pred -ceeeEEECCCcccHHhhcCCcchHHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHhcCeecC
Confidence 3456788775 46788988999998888888888 9999999999 6666643 499
Q ss_pred ceeeeeeccc---ccccccccccCC
Q psy5139 195 LQILQFQNLS---SDMHMTGLASRF 216 (216)
Q Consensus 195 ~~i~~~Q~v~---ad~~~~~~~~r~ 216 (216)
|||++||+|| |||++++|++|+
T Consensus 270 ~pi~~~Q~vq~~lAdm~~~~e~ar~ 294 (378)
T TIGR03203 270 VPIGSFQVLQHRAADMFVAVEQARS 294 (378)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999998873
No 5
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=99.87 E-value=3.9e-24 Score=174.06 Aligned_cols=195 Identities=21% Similarity=0.345 Sum_probs=142.7
Q ss_pred CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCc-eeeecCC
Q psy5139 2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDL-MGVEIPQ 80 (216)
Q Consensus 2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~-~~~~~~e 80 (216)
+||+++.+|++|||.|+++.+.+++.||+++.+.+.++.... .+....+..+++++|+++|++++.+|+. .+++++|
T Consensus 52 ~G~~gl~vPe~~GG~G~~~~~~~~v~eelg~~~~~~~~~~~~--~~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tE 129 (395)
T TIGR03204 52 KGWGVSHWPKQYGGTGWTSVQHYIFNEELQSAPAPQPLAFGV--SMVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSE 129 (395)
T ss_pred CCCCCCCCCcccCCCCCCHHHHHHHHHHHHhcCCCccchhHh--HhhHHHHHHhCCHHHHHHHHHHHhCCchheEeEecC
Confidence 699999999999999999999999999999999887754332 2344468889999999999999999986 4789999
Q ss_pred CCCCCCccHH-------------------------HHHHHHHHHHhhCC------Cce-eEeeechh-hhHHHH-HhcCC
Q psy5139 81 EYGGPGLSFM-------------------------TDILIVEEIARVDP------SVS-ILVDIQNT-LVNDLI-IKLGT 126 (216)
Q Consensus 81 ~~gG~~~~~~-------------------------~~~~v~e~lar~~~------~~~-~~v~~~~~-~~~~~~-~~~g~ 126 (216)
|.+|++...+ .+.+++ ++++++ +++ |+|+.+.+ +....+ ...+.
T Consensus 130 p~~gsd~~~~~t~a~~~g~~~~LnG~K~~vt~a~~Ad~~lv--~a~~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~~~ 207 (395)
T TIGR03204 130 PGSGSDLASLKTKAEKKGDKWIINGQKTWTTLAQHADWIFC--LCRTDPTAKKQMGISFILVDMKSKGITVRPIQTIDGG 207 (395)
T ss_pred CCCCCChhhceEEEEEcCCEEEEeeEEEeecCCccCCeEEE--EEEeCCCCCCCCCeEEEEEeCCCCCeEecChhhccCC
Confidence 9988876321 133343 555432 233 67776532 222222 22334
Q ss_pred HHHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeee---------cccc
Q psy5139 127 TEQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVS---------CGLS 194 (216)
Q Consensus 127 ~~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~---------~~fg 194 (216)
....+..|+++ .+++++.++.|++.....+...+ ..+++ +|. ++.+++ .+||
T Consensus 208 ~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r----------~g~aa--~g~----a~~~l~~a~~ya~~R~~fg 271 (395)
T TIGR03204 208 VEVNEVFFDDVEVPYENLVGEENKGWDYAKFLLGNER----------TGIAR--VGV----SKERIRRIKDLAAKVESGG 271 (395)
T ss_pred CceeEEEEcceEEcHHHcCCCCCchHHHHHHHHHHHH----------HHHHH--HHH----HHHHHHHHHHHHHHHhhcC
Confidence 45667788874 45778888889888777777776 66654 566 444443 2499
Q ss_pred ceeeeeeccc---ccccccccccCC
Q psy5139 195 LQILQFQNLS---SDMHMTGLASRF 216 (216)
Q Consensus 195 ~~i~~~Q~v~---ad~~~~~~~~r~ 216 (216)
+||++||+|| +||.++++++|+
T Consensus 272 ~~i~~~q~vq~~la~~~~~~~aar~ 296 (395)
T TIGR03204 272 KPVIEDAKFREKLAAVEIELKALEL 296 (395)
T ss_pred CccccCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999874
No 6
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=99.85 E-value=2.8e-23 Score=177.75 Aligned_cols=201 Identities=22% Similarity=0.264 Sum_probs=139.1
Q ss_pred CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhH-HHHHHhcCChhHHHHHHHHHHhCCce-eeecC
Q psy5139 2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLV-NDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIP 79 (216)
Q Consensus 2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~-~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~ 79 (216)
.||+++.+|++|||.|++..+...+.|++++.+.+.+..+..++.+. ...|.++|+++|+++|+|++++|+.+ +++++
T Consensus 120 ~Gl~gl~IPeeyGGlG~s~~~~a~V~eela~~~~s~a~~~~v~~slg~~~lL~~~GTeEQK~~yLP~LAsGe~i~afAlT 199 (774)
T PRK13026 120 EGFFALIIPKEYGGKGFSAYANSTIVSKIATRSVSAAVTVMVPNSLGPGELLTHYGTQEQKDYWLPRLADGTEIPCFALT 199 (774)
T ss_pred CCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHhhhHHHhCCCeEEEEEec
Confidence 59999999999999999999999999999987776554444444344 35788999999999999999999965 78999
Q ss_pred CCCCCCCccHHHHHHHH----------------------------H---HHHh-hC----------CCc-eeEeeechh-
Q psy5139 80 QEYGGPGLSFMTDILIV----------------------------E---EIAR-VD----------PSV-SILVDIQNT- 115 (216)
Q Consensus 80 e~~gG~~~~~~~~~~v~----------------------------e---~lar-~~----------~~~-~~~v~~~~~- 115 (216)
||.+|||...+....++ . ..++ ++ .++ .|+|+.+.+
T Consensus 200 EP~aGSDaasi~Ttav~t~a~~dGd~~~gwvLNG~K~~IT~A~~Ad~~~v~ar~~dpd~~~g~~~~~GiT~fLVp~d~pG 279 (774)
T PRK13026 200 GPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLTWDKRYITLAPVATVLGLAFKLRDPDGLLGDKKELGITCALIPTDHPG 279 (774)
T ss_pred CCCCCCchhcccceeeeeeeeecCCccccEEEEEEEEeecCccccCEEEEEEEeeCccccccCCCCCceEEEEEECCCCC
Confidence 99999986543211100 0 0111 11 122 356665432
Q ss_pred hh-HHHHHhcCCH-HHhhhhchhc---cccccccc---ccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceee
Q psy5139 116 LV-NDLIIKLGTT-EQKEKYLPRL---AQTDVSRT---SRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRW 187 (216)
Q Consensus 116 ~~-~~~~~~~g~~-~~~~~~l~~~---~~~~lg~~---~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~ 187 (216)
+. ......+|.+ .....+|+++ .+++||.+ +.|++.++..++.+| -+.+++.++|. ++.
T Consensus 280 V~ig~~~~~lG~~~~~g~v~fdDV~VP~d~lLG~~~~~G~G~~~l~~~L~~gR---------~i~laA~a~G~----A~~ 346 (774)
T PRK13026 280 VEIGRRHNPLGMAFMNGTTRGKDVFIPLDWIIGGPDYAGRGWRMLVECLSAGR---------GISLPALGTAS----GHM 346 (774)
T ss_pred eEeeccccccccCcccceEEEeeeEccHHHhcCCcccCChHHHHHHHHHHHHH---------HHHHHHHHHHH----HHH
Confidence 21 1223334433 1234566665 46788865 789988877776654 03667777787 555
Q ss_pred eee---------ccccceeeeeeccc---ccccc---cccccC
Q psy5139 188 MVS---------CGLSLQILQFQNLS---SDMHM---TGLASR 215 (216)
Q Consensus 188 ~~~---------~~fg~~i~~~Q~v~---ad~~~---~~~~~r 215 (216)
+++ .+||+||++||+|| |||.+ .+|++|
T Consensus 347 al~~Av~YA~~R~QFG~pIg~fQ~Vq~~LAdma~~~y~lEaaR 389 (774)
T PRK13026 347 ATRTTGAYAYVRRQFGMPIGQFEGVQEALARIAGNTYLLEAAR 389 (774)
T ss_pred HHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 553 35999999999999 99998 677776
No 7
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=99.84 E-value=4.9e-23 Score=176.79 Aligned_cols=198 Identities=20% Similarity=0.321 Sum_probs=137.6
Q ss_pred CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhH-HHHHHhcCChhHHHHHHHHHHhCCce-eeecC
Q psy5139 2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLV-NDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIP 79 (216)
Q Consensus 2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~-~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~ 79 (216)
.||+++.+|++|||.|++..+.+.+.|++++.+.++...+..++.++ ...|.++|+++|+++|+|++++|+.+ +++++
T Consensus 121 ~G~~gl~IPeeyGG~Gls~~~~a~v~eeLg~~~~s~a~~~~v~~slg~~~lL~~~GteeQK~~yLp~La~Ge~i~afAlT 200 (777)
T PRK09463 121 HGFFGMIIPKEYGGLEFSAYAHSRVLQKLASRSGTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLPRLARGEEIPCFALT 200 (777)
T ss_pred CCCCcCCCchhhCCCCCCHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEec
Confidence 69999999999999999999999999999998877655444444444 34688999999999999999999965 78999
Q ss_pred CCCCCCCccHHHHH---------------------------------HHHHHHHhh-C----------CCc-eeEeeech
Q psy5139 80 QEYGGPGLSFMTDI---------------------------------LIVEEIARV-D----------PSV-SILVDIQN 114 (216)
Q Consensus 80 e~~gG~~~~~~~~~---------------------------------~v~e~lar~-~----------~~~-~~~v~~~~ 114 (216)
||.+|||...+.+. +++ ++++ + .++ .|+|+.+.
T Consensus 201 EP~aGSDaa~i~Tta~~~~a~~dGd~~~g~vLNG~K~~IT~a~~Ad~l~V--~ar~~dp~~~~g~~~~~Git~fLVp~d~ 278 (777)
T PRK09463 201 SPEAGSDAGSIPDTGVVCKGEWQGEEVLGMRLTWNKRYITLAPIATVLGL--AFKLYDPDGLLGDKEDLGITCALIPTDT 278 (777)
T ss_pred CCCcCCCcccccccceeeeeeecCCcccceEEEEEEEeeCCCCccCEEEE--EEEecCcccccCCCCCCceEEEEEECCC
Confidence 99999987543211 111 1221 1 112 25565443
Q ss_pred h-h-hHHHHHhcCCH-HHhhhhchhc---cccccccc---ccchhhhhhhhccccCCceeeccceeeeecCcccCCCcce
Q psy5139 115 T-L-VNDLIIKLGTT-EQKEKYLPRL---AQTDVSRT---SRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLK 185 (216)
Q Consensus 115 ~-~-~~~~~~~~g~~-~~~~~~l~~~---~~~~lg~~---~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~ 185 (216)
+ + ......++|.+ .....+|+++ .+++||.+ +.|++.++..++.+| -+.+++.++|. +
T Consensus 279 pGV~ig~~~~~lG~r~~~g~v~fddV~VP~d~lLG~~~~~G~G~~~l~~~L~~gR---------~i~laA~avG~----a 345 (777)
T PRK09463 279 PGVEIGRRHFPLNVPFQNGPTRGKDVFIPLDYIIGGPKMAGQGWRMLMECLSVGR---------GISLPSNSTGG----A 345 (777)
T ss_pred CCeEecccccccCcccccceEEeeeeecCHHHhcccccccChHHHHHHHHHHHHH---------HHHHHHHHHHH----H
Confidence 2 1 11222233433 1223456664 46778764 789988877777654 03677888888 6
Q ss_pred eeeeec---------cccceeeeeeccc---cccccccccc
Q psy5139 186 RWMVSC---------GLSLQILQFQNLS---SDMHMTGLAS 214 (216)
Q Consensus 186 ~~~~~~---------~fg~~i~~~Q~v~---ad~~~~~~~~ 214 (216)
+++++. +||+||++||+|| |||.++++++
T Consensus 346 r~al~~Av~YA~~R~QFG~pIg~fQaVQ~~LAdma~~~~a~ 386 (777)
T PRK09463 346 KLAALATGAYARIRRQFKLPIGKFEGIEEPLARIAGNAYLM 386 (777)
T ss_pred HHHHHHHHHHHHHHHHcCCChhhcHHHHHHHHHHHHHHHHH
Confidence 655533 4999999999999 9999986443
No 8
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=99.83 E-value=1.1e-22 Score=164.48 Aligned_cols=197 Identities=20% Similarity=0.326 Sum_probs=145.2
Q ss_pred CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCc-eeeecCC
Q psy5139 2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDL-MGVEIPQ 80 (216)
Q Consensus 2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~-~~~~~~e 80 (216)
.||+++.+|++|||.|+++.+...+.|++++.+.++++.... ..+....+..+++++|+++|++++.+|+. .+++++|
T Consensus 44 ~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~-~~~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tE 122 (372)
T TIGR03207 44 MGFIGPELPEEHGGLGMGCLAAGVIHEQIARADLSMSYVNLL-ASLNGQILAQHARPEIAKPWLGQLIAGEALFAIALTE 122 (372)
T ss_pred CCCCcccCChhHCCCCCCHHHHHHHHHHHHhhCccHHHHHHh-hhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecC
Confidence 599999999999999999999999999999999998764322 23455567889999999999999999886 4789999
Q ss_pred CCCCCCccHH-------------------------HHHHHHHHHHhhCC------Cce-eEeeechh-hhHHHHHhcCCH
Q psy5139 81 EYGGPGLSFM-------------------------TDILIVEEIARVDP------SVS-ILVDIQNT-LVNDLIIKLGTT 127 (216)
Q Consensus 81 ~~gG~~~~~~-------------------------~~~~v~e~lar~~~------~~~-~~v~~~~~-~~~~~~~~~g~~ 127 (216)
|.+|+|...+ .+++++ +++++. +.. |+|+.+.+ +.......+|.+
T Consensus 123 p~~Gsd~~~~~t~a~~~~~g~~lnG~k~~vs~~~~ad~~lv--~a~~~~~~~~~~~~~~~lVp~~~~gv~~~~~~~~G~r 200 (372)
T TIGR03207 123 PRGGSDAARLRLRAERDGDDYVLNGEKTSISAADQADAAVV--FARTGSEAEGARGISAFLVPMDLPGITRNRFDCHGQR 200 (372)
T ss_pred CCCCcChhhCEEEEEEeCCEEEEEEEEEEEcCCCcCCEEEE--EEEcCCCCCCCCceEEEEEcCCCCCeecCcchhccCC
Confidence 9888775211 123333 455421 123 56776543 222234455555
Q ss_pred H--Hhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------cc
Q psy5139 128 E--QKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GL 193 (216)
Q Consensus 128 ~--~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~f 193 (216)
. ..+..|+++ .++.++.++.|+......++..| ..+++..+|. ++.+++. +|
T Consensus 201 ~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r----------~~~a~~~~G~----a~~al~~a~~~~~~R~~f 266 (372)
T TIGR03207 201 AIGRGSIFFENVRVPADHMLGNEGQGFVQVMQGFDFSR----------ALIGLQVLAV----ARAALDETWRYVAERQAF 266 (372)
T ss_pred CCCeeEEEECceeccHHHcCCCCChhHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHhcccc
Confidence 3 355677764 45678888888887666666666 8888888988 6666543 49
Q ss_pred cceeeeeeccc---ccccccccccC
Q psy5139 194 SLQILQFQNLS---SDMHMTGLASR 215 (216)
Q Consensus 194 g~~i~~~Q~v~---ad~~~~~~~~r 215 (216)
|+||.+||.|| +||++.++++|
T Consensus 267 g~~i~~~q~v~~~la~~~~~~~~ar 291 (372)
T TIGR03207 267 GKPLSAFQGVSHPLADAETQVEAAR 291 (372)
T ss_pred CCchhhhHhHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999887
No 9
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=99.82 E-value=1.7e-22 Score=163.72 Aligned_cols=198 Identities=27% Similarity=0.444 Sum_probs=146.6
Q ss_pred CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139 2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ 80 (216)
Q Consensus 2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e 80 (216)
.||+++.+|++|||.|+++.+...+.|++++.+.++++.+..|...+...|..+++++|+++|++++.+|+++ +++++|
T Consensus 45 ~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sE 124 (376)
T cd01156 45 LGLLGITAPEEYGGSGMGYLAHVIIMEEISRASGSVALSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSE 124 (376)
T ss_pred CCCCcccCCHhhCCCCCCHHHHHHHHHHHhccchhHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecC
Confidence 5999999999999999999999999999999999987765555545556788999999999999999999975 678999
Q ss_pred CCCCCCccHH-------------------------HHHHHHHHHHhhCC-----Cce-eEeeechh-h-hHHHHHhcCCH
Q psy5139 81 EYGGPGLSFM-------------------------TDILIVEEIARVDP-----SVS-ILVDIQNT-L-VNDLIIKLGTT 127 (216)
Q Consensus 81 ~~gG~~~~~~-------------------------~~~~v~e~lar~~~-----~~~-~~v~~~~~-~-~~~~~~~~g~~ 127 (216)
|.+|++.... .+.+++ +++.+. ++. |+++.+.. + ......++|.+
T Consensus 125 p~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv--~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~ 202 (376)
T cd01156 125 PNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGPDADTLVV--YAKTDPSAGAHGITAFIVEKGMPGFSRAQKLDKLGMR 202 (376)
T ss_pred CCCCCChhhCeEEEEEeCCEEEEEEEEEEecCCCcCCEEEE--EEEeCCCCCCCceEEEEEcCCCCCeecCCccccccCC
Confidence 9888774211 122333 444431 233 66766543 2 12223444433
Q ss_pred --HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------cc
Q psy5139 128 --EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GL 193 (216)
Q Consensus 128 --~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~f 193 (216)
...+..|+++ .+..++..+.|+......+...+ ..+++..+|. ++.+++. +|
T Consensus 203 ~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r----------~~~aa~~lG~----a~~al~~~~~~~~~R~~~ 268 (376)
T cd01156 203 GSNTCELVFEDCEVPEENILGGENKGVYVLMSGLDYER----------LVLAGGPIGI----MQAALDVAIPYAHQRKQF 268 (376)
T ss_pred CCCceEEEeCceEecHHHcCCCCCchHHHHHHHHhhHH----------HHHHHHHHHH----HHHHHHHHHHHHHHhHhc
Confidence 3455677764 46678888888887777777776 7788888888 6665543 49
Q ss_pred cceeeeeeccc---ccccccccccC
Q psy5139 194 SLQILQFQNLS---SDMHMTGLASR 215 (216)
Q Consensus 194 g~~i~~~Q~v~---ad~~~~~~~~r 215 (216)
|+||++||.|| +||+++++++|
T Consensus 269 g~~i~~~~~v~~~la~~~~~l~aar 293 (376)
T cd01156 269 GQPIGEFQLVQGKLADMYTRLNASR 293 (376)
T ss_pred CcchHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999886
No 10
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=99.82 E-value=1.7e-22 Score=163.92 Aligned_cols=197 Identities=23% Similarity=0.349 Sum_probs=143.5
Q ss_pred CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139 2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ 80 (216)
Q Consensus 2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e 80 (216)
.||+++.+|++|||.|+++.+...+.|++++.+.++++.+..+ .+....+..+++++|+++|++++.+|..+ +++++|
T Consensus 44 ~G~~~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tE 122 (378)
T cd01157 44 LGLMNTHIPEDCGGLGLGTFDTCLITEELAYGCTGVQTAIEAN-SLGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTE 122 (378)
T ss_pred CCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhhhHHHHHHHhh-hhhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecC
Confidence 5999999999999999999999999999999988876554333 24444567789999999999999999865 688999
Q ss_pred CCCCCCccHH-------------------------HHHHHHHHHHhhCC--------Cc-eeEeeechh-h-hHHHHHhc
Q psy5139 81 EYGGPGLSFM-------------------------TDILIVEEIARVDP--------SV-SILVDIQNT-L-VNDLIIKL 124 (216)
Q Consensus 81 ~~gG~~~~~~-------------------------~~~~v~e~lar~~~--------~~-~~~v~~~~~-~-~~~~~~~~ 124 (216)
|.+|++...+ .+++++ +++++. .+ .|+|+.+.+ + ......++
T Consensus 123 p~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad~~lv--~a~~~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~ 200 (378)
T cd01157 123 PGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFL--LARSDPDPKCPASKAFTGFIVEADTPGIQPGRKELNM 200 (378)
T ss_pred CCCCCchhcCeEEEEEcCCEEEEeeEEEeecCCccCCEEEE--EEEeCCcccCCCCCceEEEEEcCCCCCeeccCccccc
Confidence 9888775311 123333 555432 12 356766542 2 22233445
Q ss_pred CCH--HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec--------
Q psy5139 125 GTT--EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC-------- 191 (216)
Q Consensus 125 g~~--~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~-------- 191 (216)
|.+ ...+..|+++ .++.++.++.|++.....+...| ..+++..+|. ++++++.
T Consensus 201 G~~~~~s~~~~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r----------~~~aa~~lG~----a~~~l~~~~~~~~~R 266 (378)
T cd01157 201 GQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAMGAFDKTR----------PPVAAGAVGL----AQRALDEATKYALER 266 (378)
T ss_pred CCCCCCceEEEeccEEECHHHcCCCCCchHHHHHHHHhhhH----------HHHHHHHHHH----HHHHHHHHHHHHHhc
Confidence 544 3445677774 45678888888887666666666 7778888888 6666543
Q ss_pred -cccceeeeeeccc---ccccccccccC
Q psy5139 192 -GLSLQILQFQNLS---SDMHMTGLASR 215 (216)
Q Consensus 192 -~fg~~i~~~Q~v~---ad~~~~~~~~r 215 (216)
+||+||++||.|| +||.++++++|
T Consensus 267 ~~fg~~i~~~q~vq~~la~~~~~~~aar 294 (378)
T cd01157 267 KTFGKLIAEHQAVSFMLADMAMKVELAR 294 (378)
T ss_pred cccCccHHHhHHHHHHHHHHHHHHHHHH
Confidence 4999999999999 99999999876
No 11
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=99.81 E-value=2.5e-22 Score=162.91 Aligned_cols=197 Identities=18% Similarity=0.197 Sum_probs=144.9
Q ss_pred CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139 2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ 80 (216)
Q Consensus 2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e 80 (216)
.||+++.+|++|||.|+++.+...+.|++++.+.+.+..+..+ .....+..+++++|++++++++.+|+.+ +.+++|
T Consensus 49 ~Gl~~~~vP~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~--~~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE 126 (380)
T PRK03354 49 MGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLGAPTYVLYQLP--GGFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITE 126 (380)
T ss_pred CCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCcchHHHHHhc--ccHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecC
Confidence 5999999999999999999999999999999998876544332 2345688899999999999999999964 789999
Q ss_pred CCCCCCccHH-------------------------HHHHHHHHHHhhCC-----Cce-eEeeechh-hhHHHHHhcCCH-
Q psy5139 81 EYGGPGLSFM-------------------------TDILIVEEIARVDP-----SVS-ILVDIQNT-LVNDLIIKLGTT- 127 (216)
Q Consensus 81 ~~gG~~~~~~-------------------------~~~~v~e~lar~~~-----~~~-~~v~~~~~-~~~~~~~~~g~~- 127 (216)
+..|++...+ .+++++ +++++. .+. |+++.+.. +......++|.+
T Consensus 127 ~~~gs~~~~~~t~a~~~~~g~~lnG~K~fis~~~~ad~~~v--~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~G~r~ 204 (380)
T PRK03354 127 PGAGSDVGSLKTTYTRRNGKVYLNGSKCFITSSAYTPYIVV--MARDGASPDKPVYTEWFVDMSKPGIKVTKLEKLGLRM 204 (380)
T ss_pred CCCCCchhhCEEEEEEeCCEEEEeeEEEEEcCCCcCCEEEE--EEEcCCCCCCCceeEEEEECCCCceEeccccccCCCC
Confidence 9888875311 123333 455421 123 66775433 222345666654
Q ss_pred -HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------ccc
Q psy5139 128 -EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GLS 194 (216)
Q Consensus 128 -~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~fg 194 (216)
...+..|+++ .++.++.++.|+......++..| ..+++..+|. ++.+++. +||
T Consensus 205 ~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~~~~~~~r----------~~~aa~~~G~----a~~al~~a~~~a~~R~~fg 270 (380)
T PRK03354 205 DSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHER----------FLVALTNYGT----AMCAFEDAARYANQRVQFG 270 (380)
T ss_pred CCeEEEEEccEEecHHHcCCCCChHHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHhhhccC
Confidence 4567778775 45678888888876555555555 7788888888 6666543 499
Q ss_pred ceeeeeeccc---ccccccccccCC
Q psy5139 195 LQILQFQNLS---SDMHMTGLASRF 216 (216)
Q Consensus 195 ~~i~~~Q~v~---ad~~~~~~~~r~ 216 (216)
+||.+||.|| +||.+.++++|+
T Consensus 271 ~~i~~~q~vq~~la~~~~~~~aar~ 295 (380)
T PRK03354 271 EAIGRFQLIQEKFAHMAIKLNSMKN 295 (380)
T ss_pred ccHHHhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999998763
No 12
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=99.81 E-value=2.8e-22 Score=164.08 Aligned_cols=198 Identities=17% Similarity=0.314 Sum_probs=143.0
Q ss_pred CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139 2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ 80 (216)
Q Consensus 2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e 80 (216)
.||+++.+|++|||.|+++.+...+.|++++.+.+++..+..|..+....+..+++++|+++|++.+.+|+.+ +++++|
T Consensus 80 ~Gl~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tE 159 (410)
T PTZ00461 80 LGVMGVTVPEADGGAGMDAVAAVIIHHELSKYDPGFCLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSE 159 (410)
T ss_pred CCCCcccCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecC
Confidence 5999999999999999999999999999999987765544444434455678899999999999999999876 679999
Q ss_pred CCCCCCccHH--------------------------HHHHHHHHHHhhCCCc-eeEeeechh--hhHHHHHhcCCH--HH
Q psy5139 81 EYGGPGLSFM--------------------------TDILIVEEIARVDPSV-SILVDIQNT--LVNDLIIKLGTT--EQ 129 (216)
Q Consensus 81 ~~gG~~~~~~--------------------------~~~~v~e~lar~~~~~-~~~v~~~~~--~~~~~~~~~g~~--~~ 129 (216)
|.+|++.... .+++++ .++++.+. .|+|+.+.+ .+.....++|.+ ..
T Consensus 160 p~~Gsd~~~~~t~a~~~~~gg~~L~G~K~~vs~a~~Ad~~lv--~a~~~~~~~~flVp~~~~Gv~v~~~~~~~G~r~~~~ 237 (410)
T PTZ00461 160 PGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITNGTVADVFLI--YAKVDGKITAFVVERGTKGFTQGPKIDKCGMRASHM 237 (410)
T ss_pred CCCCCChHHCeEEEEEcCCCeEEEEeEEEeECCCccCCEEEE--EEEeCCceEEEEEeCCCCCeecCCCCcccCCCCCce
Confidence 9877764211 122333 44544443 366766432 112223344443 33
Q ss_pred hhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------ccccee
Q psy5139 130 KEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GLSLQI 197 (216)
Q Consensus 130 ~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~fg~~i 197 (216)
.+..|+++ .++.++.++.|+......+...+ +.+++..+|. ++.+++. +||+||
T Consensus 238 ~~l~f~~v~Vp~~~~lg~~g~g~~~~~~~~~~~r----------~~~aa~~~G~----a~~al~~a~~ya~~R~~fg~~i 303 (410)
T PTZ00461 238 CQLFFEDVVVPAENLLGEEGKGMVGMMRNLELER----------VTLAAMAVGI----AERSVELMTSYASERKAFGKPI 303 (410)
T ss_pred EEEEEcceecCHHHhCCCCCccHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHhCeecCcCH
Confidence 45667764 45778888888877666666666 7788888888 5555433 499999
Q ss_pred eeeeccc---ccccccccccC
Q psy5139 198 LQFQNLS---SDMHMTGLASR 215 (216)
Q Consensus 198 ~~~Q~v~---ad~~~~~~~~r 215 (216)
++||.|| +||++.++++|
T Consensus 304 ~~~q~vq~~la~~~~~l~aar 324 (410)
T PTZ00461 304 SNFGQIQRYIAEGYADTEAAK 324 (410)
T ss_pred HhhHHHHHHHHHHHHHHHHHH
Confidence 9999999 99999998876
No 13
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=99.81 E-value=4e-22 Score=162.81 Aligned_cols=198 Identities=24% Similarity=0.394 Sum_probs=147.1
Q ss_pred CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139 2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ 80 (216)
Q Consensus 2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e 80 (216)
.||+++.+|++|||.|+++.+.+.+.|++++.+.++++.+..|.......+..+++++|+++|++.+.+|+.. +++++|
T Consensus 71 ~G~~~~~vP~e~GG~g~~~~~~~~v~e~la~~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sE 150 (404)
T PLN02519 71 FNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSE 150 (404)
T ss_pred CCCCcccCChhhCCCCCCHHHHHHHHHHHhhhcccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecC
Confidence 5999999999999999999999999999999999988766655545556788999999999999999999865 678999
Q ss_pred CCCCCCccHH-------------------------HHHHHHHHHHhhCC-----Cce-eEeeechh-h-hHHHHHhcCCH
Q psy5139 81 EYGGPGLSFM-------------------------TDILIVEEIARVDP-----SVS-ILVDIQNT-L-VNDLIIKLGTT 127 (216)
Q Consensus 81 ~~gG~~~~~~-------------------------~~~~v~e~lar~~~-----~~~-~~v~~~~~-~-~~~~~~~~g~~ 127 (216)
+..|++...+ .+.+++ .++.+. ++. |+|+.+.. + ......++|.+
T Consensus 151 p~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~a~~ad~~~v--~a~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~G~r 228 (404)
T PLN02519 151 PNSGSDVVSMKCKAERVDGGYVLNGNKMWCTNGPVAQTLVV--YAKTDVAAGSKGITAFIIEKGMPGFSTAQKLDKLGMR 228 (404)
T ss_pred CCcCCCcccceEEEEEeCCEEEEEeEEEeecCCCcCCEEEE--EEEeCCCCCCCeeEEEEEeCCCCCeeccCcccccCCC
Confidence 9887775211 123333 455432 233 66776432 2 22334555544
Q ss_pred --HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------cc
Q psy5139 128 --EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GL 193 (216)
Q Consensus 128 --~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~f 193 (216)
...+..|+++ .++.++.++.|+......+...+ ..+++..+|. ++.+++. +|
T Consensus 229 gt~s~~v~f~~v~Vp~~~~lg~~~~G~~~~~~~~~~~r----------~~~aa~~lG~----a~~al~~a~~~a~~R~~~ 294 (404)
T PLN02519 229 GSDTCELVFENCFVPEENVLGQEGKGVYVMMSGLDLER----------LVLAAGPLGL----MQACLDVVLPYVRQREQF 294 (404)
T ss_pred CCCeeEEEeCeEEecHHHcCCCCCccHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHhceeC
Confidence 3456677775 46778888888876666666666 7778888888 5655543 39
Q ss_pred cceeeeeeccc---ccccccccccC
Q psy5139 194 SLQILQFQNLS---SDMHMTGLASR 215 (216)
Q Consensus 194 g~~i~~~Q~v~---ad~~~~~~~~r 215 (216)
|+||.+||.|| +||+++++++|
T Consensus 295 g~pl~~~~~v~~~la~~~~~l~aar 319 (404)
T PLN02519 295 GRPIGEFQFIQGKLADMYTSLQSSR 319 (404)
T ss_pred CccHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999887
No 14
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=99.81 E-value=6.5e-22 Score=163.53 Aligned_cols=186 Identities=19% Similarity=0.222 Sum_probs=138.7
Q ss_pred ccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCCC
Q psy5139 3 TLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQE 81 (216)
Q Consensus 3 G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e~ 81 (216)
||+++.+|++|||.|++..+.+++.||+++.+.+.+..+..|..++...+..+|+++|+++|+|++.+|+.+ +++++|
T Consensus 64 Gl~gl~vPeeyGG~Gl~~~~~a~v~Eelgr~~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~Lp~lasGe~i~A~AltE- 142 (520)
T PTZ00457 64 NLYGARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDGTIMMGWATEE- 142 (520)
T ss_pred CccCCCCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCcEEEEEeCC-
Confidence 999999999999999999999999999999876655433345445666788899999999999999999964 778877
Q ss_pred CCCCCccHH-------------------------HHHHHHHHHHhhCC------------Cc-eeEeeechh-hhHHHHH
Q psy5139 82 YGGPGLSFM-------------------------TDILIVEEIARVDP------------SV-SILVDIQNT-LVNDLII 122 (216)
Q Consensus 82 ~gG~~~~~~-------------------------~~~~v~e~lar~~~------------~~-~~~v~~~~~-~~~~~~~ 122 (216)
.+|+|...+ .+.+++ +++++. ++ .|+|+.+.+ +...
T Consensus 143 ~aGSD~a~i~TtA~~~~gg~wvLNG~K~~t~g~~Ad~~lV--~Art~~~~~~~~g~~~~~git~FlV~~dapGVtv~--- 217 (520)
T PTZ00457 143 GCGSDISMNTTKASLTDDGSYVLTGQKRCEFAASATHFLV--LAKTLTQTAAEEGATEVSRNSFFICAKDAKGVSVN--- 217 (520)
T ss_pred CCCCccccceeEEEEcCCCeEEEEEEEEEEcCchhcEEEE--EeecCCcccccccccCcCceEEEEEECCCCceEEe---
Confidence 777775321 122233 455321 12 366665432 1110
Q ss_pred hcCCHHHhhhhchhc-ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeeccccceeeeee
Q psy5139 123 KLGTTEQKEKYLPRL-AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSCGLSLQILQFQ 201 (216)
Q Consensus 123 ~~g~~~~~~~~l~~~-~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~~fg~~i~~~Q 201 (216)
..+.+|+++ .++.+|.++.|++.....++..| ..+++.++|. ++++++.+-. -..+|
T Consensus 218 ------~~eV~FddVP~~~vLG~~g~G~~~a~~~L~~~R----------l~~aA~~vGi----a~~ale~av~--ya~~Q 275 (520)
T PTZ00457 218 ------GDSVVFENTPAADVVGVVGEGFKDAMITLFTEQ----------YLYAASLLGI----MKRVVQELRG--SNAEE 275 (520)
T ss_pred ------cCEEEECCCCHHHhCCCCCchHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHH--HHHhh
Confidence 146788876 46788999999998888888888 9999999999 8888876511 12369
Q ss_pred ccc---ccccccccccCC
Q psy5139 202 NLS---SDMHMTGLASRF 216 (216)
Q Consensus 202 ~v~---ad~~~~~~~~r~ 216 (216)
+|| |||+++++++|.
T Consensus 276 aVq~~LAdma~~ieAars 293 (520)
T PTZ00457 276 GATDTVASFACAMYAMES 293 (520)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999 999999999873
No 15
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=99.80 E-value=7.6e-22 Score=160.42 Aligned_cols=196 Identities=24% Similarity=0.304 Sum_probs=141.4
Q ss_pred CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139 2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ 80 (216)
Q Consensus 2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e 80 (216)
.||+++ +|++|||.|+++.+...+.|++++.+.+.+..+..+...+...+..+++++|++++++.+.+|+++ +++++|
T Consensus 56 ~Gl~~~-vP~~~GG~g~~~~~~~~v~e~l~~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tE 134 (386)
T cd01151 56 LGLLGA-TIKGYGCAGLSSVAYGLIAREVERVDSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTE 134 (386)
T ss_pred CCCCcc-CccccCCCCCCHHHHHHHHHHHHhhChhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecC
Confidence 599999 999999999999999999999999988876555555445556788999999999999999999975 678999
Q ss_pred CCCCCCccHH-------------------------HHHHHHHHHHhhC--CCc-eeEeeechh-h-hHHHHHhcCCH--H
Q psy5139 81 EYGGPGLSFM-------------------------TDILIVEEIARVD--PSV-SILVDIQNT-L-VNDLIIKLGTT--E 128 (216)
Q Consensus 81 ~~gG~~~~~~-------------------------~~~~v~e~lar~~--~~~-~~~v~~~~~-~-~~~~~~~~g~~--~ 128 (216)
+..|++.... .+++++ .+|.+ ..+ .|+|+.+.+ + ......++|.+ .
T Consensus 135 p~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~~~~Ad~~lv--~ar~~~~~~~~~flVp~~~~gv~i~~~~~~~G~~g~~ 212 (386)
T cd01151 135 PNHGSDPGGMETRARKDGGGYKLNGSKTWITNSPIADVFVV--WARNDETGKIRGFILERGMKGLSAPKIQGKFSLRASI 212 (386)
T ss_pred CCCCCChhhCeEEEEEECCEEEEEEEEEeecCCCcCCEEEE--EEEECCCCcEEEEEEcCCCCCeecCCCCCCcCCCCCc
Confidence 9888876321 123333 45544 223 366776532 1 12223445544 3
Q ss_pred Hhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------cccce
Q psy5139 129 QKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GLSLQ 196 (216)
Q Consensus 129 ~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~fg~~ 196 (216)
..+..|+++ .++.++. +.|+......+...| ..+++..+|. ++.+++. +||+|
T Consensus 213 s~~v~f~~v~Vp~~~~l~~-~~g~~~~~~~~~~~r----------~~~aa~~lG~----a~~al~~a~~~a~~R~~~g~~ 277 (386)
T cd01151 213 TGEIVMDNVFVPEENLLPG-AEGLRGPFKCLNNAR----------YGIAWGALGA----AEDCYHTARQYVLDRKQFGRP 277 (386)
T ss_pred eeEEEEccEEeCHHHcCCc-cccHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHhCeecCCc
Confidence 455667764 3456654 457666555555555 7788888888 5655533 49999
Q ss_pred eeeeeccc---ccccccccccC
Q psy5139 197 ILQFQNLS---SDMHMTGLASR 215 (216)
Q Consensus 197 i~~~Q~v~---ad~~~~~~~~r 215 (216)
|++||.|| +||++.++++|
T Consensus 278 i~~~q~vq~~la~~~~~~eaar 299 (386)
T cd01151 278 LAAFQLVQKKLADMLTEIALGL 299 (386)
T ss_pred hhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999887
No 16
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=99.80 E-value=1.2e-21 Score=160.28 Aligned_cols=197 Identities=22% Similarity=0.373 Sum_probs=142.9
Q ss_pred CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139 2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ 80 (216)
Q Consensus 2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e 80 (216)
+||+++.+|++|||.|+++.+...+.|++++ +.+....+..|...+...+..+++++|++++++.+.+|+.+ +++++|
T Consensus 68 ~Gl~~l~vP~~~GG~g~~~~~~~~v~e~l~~-~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE 146 (409)
T cd01161 68 LGLFGLQVPEEYGGLGLNNTQYARLAEIVGM-DLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFALTE 146 (409)
T ss_pred CCCCCCCCChhhCCCCCCHHHHHHHHHHHhh-ChHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEEecC
Confidence 5999999999999999999999999999999 88776655555444445578899999999999999999976 678999
Q ss_pred CCCCCCccHH---------------------------HHHHHHHHHHhhC---------CCce-eEeeechh-h-hHHHH
Q psy5139 81 EYGGPGLSFM---------------------------TDILIVEEIARVD---------PSVS-ILVDIQNT-L-VNDLI 121 (216)
Q Consensus 81 ~~gG~~~~~~---------------------------~~~~v~e~lar~~---------~~~~-~~v~~~~~-~-~~~~~ 121 (216)
+..|++.... .+.+++ .++++ ..+. |+++.+.. + .....
T Consensus 147 p~~Gs~~~~~~t~a~~~~~g~g~~l~G~K~~vs~~~~Ad~~lv--~ar~~~~~~~g~~~~~~~~flvp~~~~gv~~~~~~ 224 (409)
T cd01161 147 PSSGSDAASIRTTAVLSEDGKHYVLNGSKIWITNGGIADIFTV--FAKTEVKDATGSVKDKITAFIVERSFGGVTNGPPE 224 (409)
T ss_pred CCCCCChhhCeeEEEEcCCCCEEEEEeEEEeecCCCcCCEEEE--EEEcCCCCCCCCCCCceEEEEEeCCCCCcccCCcc
Confidence 9877764311 122222 34432 1222 56665432 1 12223
Q ss_pred HhcCCH--HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec-----
Q psy5139 122 IKLGTT--EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC----- 191 (216)
Q Consensus 122 ~~~g~~--~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~----- 191 (216)
.++|.+ ...+..|+++ .++.++.++.|++.....+...| ..+++..+|. ++++++.
T Consensus 225 ~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~g~g~~~~~~~l~~~r----------~~~aa~~lG~----a~~al~~a~~~a 290 (409)
T cd01161 225 KKMGIKGSNTAEVYFEDVKIPVENVLGEVGDGFKVAMNILNNGR----------FGMGAALIGT----MKRCIEKAVDYA 290 (409)
T ss_pred cccCCCCCCceEEEeccEEECHHHcCCCCChHHHHHHHHHHhHH----------HHHHHHHHHH----HHHHHHHHHHHH
Confidence 444443 3455667764 45678888888887777777776 8888888988 6666543
Q ss_pred ----cccceeeeeeccc---ccccccccccC
Q psy5139 192 ----GLSLQILQFQNLS---SDMHMTGLASR 215 (216)
Q Consensus 192 ----~fg~~i~~~Q~v~---ad~~~~~~~~r 215 (216)
+||+||.+||.|| +||.+.++++|
T Consensus 291 ~~R~~fg~~l~~~q~vq~~la~~~~~~~aar 321 (409)
T cd01161 291 NNRKQFGKKIHEFGLIQEKLANMAILQYATE 321 (409)
T ss_pred HhceeCCccHHHhHHHHHHHHHHHHHHHHHH
Confidence 4999999999999 99999998876
No 17
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=99.79 E-value=1e-20 Score=153.52 Aligned_cols=196 Identities=21% Similarity=0.330 Sum_probs=142.2
Q ss_pred CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHH-HHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCc-eeeecC
Q psy5139 2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSIL-VDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDL-MGVEIP 79 (216)
Q Consensus 2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~-~~~~~~ 79 (216)
+||+++.+|++|||.|.++.+.+.+.|++++.+.+.++. ... ......+..+++++|+++|++++.+++. .+++++
T Consensus 47 ~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~~~~~~~~~~~~~~--~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~t 124 (380)
T cd01152 47 AGWAAPGWPKEYGGRGASLMEQLIFREEMAAAGAPVPFNQIGI--DLAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFS 124 (380)
T ss_pred CCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCCCcccchhhH--HHHHHHHHHhCCHHHHHHHhHHHhCCchhheeecC
Confidence 699999999999999999999999999999999888764 322 2345568899999999999999999996 478899
Q ss_pred CCCCCCCccHH-------------------------HHHHHHHHHHhhCC------Cc-eeEeeechh-hh-HHHHHhcC
Q psy5139 80 QEYGGPGLSFM-------------------------TDILIVEEIARVDP------SV-SILVDIQNT-LV-NDLIIKLG 125 (216)
Q Consensus 80 e~~gG~~~~~~-------------------------~~~~v~e~lar~~~------~~-~~~v~~~~~-~~-~~~~~~~g 125 (216)
|+..|++.... .+.+++ .+++++ .+ .|+|+.+.. +. ......+|
T Consensus 125 E~~~gsd~~~~~t~a~~~~~g~~L~G~K~~it~~~~ad~~lv--~a~~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~g 202 (380)
T cd01152 125 EPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAHYADWAWL--LVRTDPEAPKHRGISILLVDMDSPGVTVRPIRSING 202 (380)
T ss_pred CCCCCcchhhCeeeEEEcCCeEEEecEEEEEcCccccCEEEE--EEEeCCCccCcCCeEEEEEeCCCCceEeeehhhccC
Confidence 98888775211 133333 455432 23 367776432 22 12223455
Q ss_pred CHHHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec-----ccccee
Q psy5139 126 TTEQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC-----GLSLQI 197 (216)
Q Consensus 126 ~~~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~-----~fg~~i 197 (216)
.....+..|+++ .++.++.++.|+..+...+...| ..+++...+. .+.++++ .||+||
T Consensus 203 ~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r----------~~~~~~~~~~----~~~a~~~a~~r~~~g~~l 268 (380)
T cd01152 203 GEFFNEVFLDDVRVPDANRVGEVNDGWKVAMTTLNFER----------VSIGGSAATF----FELLLARLLLLTRDGRPL 268 (380)
T ss_pred CCCcceEEecCcCcchhcccCCCCchHHHHHHHHHhcc----------cccchhhhHH----HHHHHHHHHHHHhcCCCc
Confidence 445566677764 46788888889887777666666 6665555555 4444443 399999
Q ss_pred eeeeccc---ccccccccccC
Q psy5139 198 LQFQNLS---SDMHMTGLASR 215 (216)
Q Consensus 198 ~~~Q~v~---ad~~~~~~~~r 215 (216)
.+||.|| +||+++++++|
T Consensus 269 ~~~~~vq~~la~~~~~l~~a~ 289 (380)
T cd01152 269 IDDPLVRQRLARLEAEAEALR 289 (380)
T ss_pred ccCHHHHHHHHHHHHHHHHHH
Confidence 9999999 99999999886
No 18
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=99.79 E-value=1.9e-21 Score=164.87 Aligned_cols=197 Identities=19% Similarity=0.211 Sum_probs=142.4
Q ss_pred CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139 2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ 80 (216)
Q Consensus 2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e 80 (216)
.||+++.+|++|||.|++.....++.|.+.+.+.+.......+ ......|..+|+++||++|+|++.+|++. +++++|
T Consensus 111 ~G~~~l~~Pee~GG~Gl~~~~~~~~~E~~~~a~~~~~~~~~l~-~ga~~~L~~~Gs~eqk~~~Lp~l~sGe~~~t~alTE 189 (622)
T PTZ00456 111 GGWTGISEPEEYGGQALPLSVGFITRELMATANWGFSMYPGLS-IGAANTLMAWGSEEQKEQYLTKLVSGEWSGTMCLTE 189 (622)
T ss_pred cCCCCCCCCcccCCCCcCHHHHHHHHHHHHHhchHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHhcCChhhhhhccC
Confidence 5999999999999999998755555555666666544332222 23456789999999999999999999986 689999
Q ss_pred CCCCCCccHH---------------------H---------HHHHHHHHHhhCC------Cce-eEeeechh--------
Q psy5139 81 EYGGPGLSFM---------------------T---------DILIVEEIARVDP------SVS-ILVDIQNT-------- 115 (216)
Q Consensus 81 ~~gG~~~~~~---------------------~---------~~~v~e~lar~~~------~~~-~~v~~~~~-------- 115 (216)
|.+|+|+..+ + .+.++ ++|+++ +++ |+|+.+..
T Consensus 190 p~aGSD~~~l~T~A~~~gdG~y~L~G~K~fIt~g~~~~~~n~~~lV--lAr~~~~~~g~~GiSlFlVp~~~~~~~G~~~~ 267 (622)
T PTZ00456 190 PQCGTDLGQVKTKAEPSADGSYKITGTKIFISAGDHDLTENIVHIV--LARLPNSLPTTKGLSLFLVPRHVVKPDGSLET 267 (622)
T ss_pred CccCCCcccCeeEEEECCCCcEEEeeEEEEecCCchhhccCcEEEE--EEEecCCCCCCCceEEEEEeCCCCCcCCCccC
Confidence 9999886311 1 11234 677542 244 77875321
Q ss_pred ----hhHHHHHhcCCH--HHhhhhchhcccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeee
Q psy5139 116 ----LVNDLIIKLGTT--EQKEKYLPRLAQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMV 189 (216)
Q Consensus 116 ----~~~~~~~~~g~~--~~~~~~l~~~~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~ 189 (216)
.+.....++|.+ ......|+++...++|+++.|+..+...++..| +.+++..+|. ++.++
T Consensus 268 ~~gv~~~~~~~kmG~~gs~t~~l~fd~~~~~llG~~~~Gl~~~~~~mn~aR----------l~vaa~~lG~----a~~Al 333 (622)
T PTZ00456 268 AKNVKCIGLEKKMGIKGSSTCQLSFENSVGYLIGEPNAGMKQMFTFMNTAR----------VGTALEGVCH----AELAF 333 (622)
T ss_pred CCCeeecCcccccCCCCCceEEEEeeChhHhhcCCCChHHHHHHHHHHHHH----------HHHHHHHHHH----HHHHH
Confidence 112234566755 345668888777889999999998888888888 9999999988 44444
Q ss_pred ec---------c------------ccceeeeeeccc---ccccccccccC
Q psy5139 190 SC---------G------------LSLQILQFQNLS---SDMHMTGLASR 215 (216)
Q Consensus 190 ~~---------~------------fg~~i~~~Q~v~---ad~~~~~~~~r 215 (216)
+. + |++||.+||.|| ++|.+.+|++|
T Consensus 334 ~~Al~YAk~R~Qfr~~~~~~~~~~~~~~I~~~~~Vr~~L~~~~a~~eaar 383 (622)
T PTZ00456 334 QNALRYARERRSMRALSGTKEPEKPADRIICHANVRQNILFAKAVAEGGR 383 (622)
T ss_pred HHHHHHHHhcccCccccccccccCCCCccccCHHHHHHHHHHHHHHHHHH
Confidence 21 2 588999999999 99998888776
No 19
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=99.79 E-value=9.4e-22 Score=160.24 Aligned_cols=199 Identities=18% Similarity=0.248 Sum_probs=140.5
Q ss_pred CccccccCCCCCCCCCCCHHHHHHHHHHHHccC-CChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecC
Q psy5139 2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVD-PSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIP 79 (216)
Q Consensus 2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~-~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~ 79 (216)
+||+++.+|++|||.|+++.+.+.+.|++++.+ .+.+.....+.......+..+++++|+++|++++.+|+.+ +++++
T Consensus 53 ~G~~~l~~P~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~t 132 (394)
T cd01155 53 EGLWNLFLPEVSGLSGLTNLEYAYLAEETGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMT 132 (394)
T ss_pred CCCCCCCCChhhCCCCcCHHHHHHHHHHHhhhcccchheeecccccccHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeC
Confidence 699999999999999999999999999999985 3333222111112334688999999999999999999876 68999
Q ss_pred CCC-CCCCccHH--------------------H-------HHHHHHHHHhhCC-------Cce-eEeeechh--hhHHHH
Q psy5139 80 QEY-GGPGLSFM--------------------T-------DILIVEEIARVDP-------SVS-ILVDIQNT--LVNDLI 121 (216)
Q Consensus 80 e~~-gG~~~~~~--------------------~-------~~~v~e~lar~~~-------~~~-~~v~~~~~--~~~~~~ 121 (216)
|+. +|++...+ + +.+++ +++++. .+. |+|+.+.+ ......
T Consensus 133 E~~~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~~~~~a~~~~v--~a~~~~~~~~~~~~~~~flVp~~~~Gv~i~~~~ 210 (394)
T cd01155 133 EPDVASSDATNIECSIERDGDDYVINGRKWWSSGAGDPRCKIAIV--MGRTDPDGAPRHRQQSMILVPMDTPGVTIIRPL 210 (394)
T ss_pred CCCCCCCchhhCEEEEEEECCEEEEEEEEEEEcCCCCCCCCEEEE--EEEeCCCcCCCCCceEEEEEeCCCCCeEeeccc
Confidence 986 56664311 1 12233 444321 233 67776532 222334
Q ss_pred HhcCCHH----Hhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---
Q psy5139 122 IKLGTTE----QKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC--- 191 (216)
Q Consensus 122 ~~~g~~~----~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~--- 191 (216)
.++|.+. ..+..|+++ .++.++.++.|++.....+...| ...++..+|. ++++++.
T Consensus 211 ~~~G~r~~~t~s~~v~f~dv~Vp~~~~lg~~~~g~~~~~~~~~~~r----------~~~~a~~lG~----a~~al~~~~~ 276 (394)
T cd01155 211 SVFGYDDAPHGHAEITFDNVRVPASNLILGEGRGFEIAQGRLGPGR----------IHHCMRLIGA----AERALELMCQ 276 (394)
T ss_pred cccCCCCCCCCeeEEEEccEEecHHHcCCCCChHHHHHHHHhhhhH----------HHHHHHHHHH----HHHHHHHHHH
Confidence 5565552 346677774 45678888888887777666666 7778888888 5555532
Q ss_pred ------cccceeeeeeccc---ccccccccccCC
Q psy5139 192 ------GLSLQILQFQNLS---SDMHMTGLASRF 216 (216)
Q Consensus 192 ------~fg~~i~~~Q~v~---ad~~~~~~~~r~ 216 (216)
+||+||++||.|| +||++.++++|+
T Consensus 277 ~~~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~ 310 (394)
T cd01155 277 RAVSREAFGKKLAQHGVVAHWIAKSRIEIEQARL 310 (394)
T ss_pred HHhcCccCCCcHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999 999999998873
No 20
>KOG0137|consensus
Probab=99.78 E-value=1.9e-21 Score=157.00 Aligned_cols=196 Identities=20% Similarity=0.317 Sum_probs=158.6
Q ss_pred CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139 2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ 80 (216)
Q Consensus 2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e 80 (216)
+|++++.+|++|+|.|+.+.+...+.|..+-.+.+++..+..|..++...|..+|+++|+++|+|.+++|+.+ +++++|
T Consensus 121 lG~fgl~v~~e~~G~G~~ntq~arl~e~~~~~D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kYL~~LaSg~~~~A~altE 200 (634)
T KOG0137|consen 121 LGLFGLQVPSEFDGLGFCNTQYARLFEIVSVADLNVGVTLGAHQSIGLKGLLLYGTDEQKQKYLPKLASGKLIAAFALTE 200 (634)
T ss_pred hCceeeccCcccCccccchHHHHHHhhccccccccceeeeccchhhheeeeeecCCHHHHHHHHHhhhcCCccceEEEec
Confidence 6999999999999999999999999999998899988888878777888899999999999999999999997 689999
Q ss_pred CCCCCCccHH---------------------------HHHHHHHHHHhhCC---------C-ceeEeeechh--hhHHHH
Q psy5139 81 EYGGPGLSFM---------------------------TDILIVEEIARVDP---------S-VSILVDIQNT--LVNDLI 121 (216)
Q Consensus 81 ~~gG~~~~~~---------------------------~~~~v~e~lar~~~---------~-~~~~v~~~~~--~~~~~~ 121 (216)
|-+|||.+.. .+++.+ +|++.. . ++|+|+.+.. ....+.
T Consensus 201 ~s~Gsdaas~~~~a~~s~dg~~y~LNG~Kiwisn~g~Adif~V--fAqt~~~~~~g~~k~k~T~Flver~~~Gvt~G~~e 278 (634)
T KOG0137|consen 201 PSSGSDAASGRTTATLSPDGKHYVLNGSKIWISNGGLADIFTV--FAQTEVDPADGEVKRKITAFLVERDFGGVTNGPPE 278 (634)
T ss_pred CCCCcccccceeeeeecCCCCeEEEcCeeEEEecCccceeeee--eeccccCCCCccccCceEEEEEeccccCccCCCch
Confidence 9999987632 244555 777641 1 4588887543 334556
Q ss_pred HhcCCH--HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec-----
Q psy5139 122 IKLGTT--EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC----- 191 (216)
Q Consensus 122 ~~~g~~--~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~----- 191 (216)
.++|.+ .+.+++|+++ .++++|.+++|+++.+..++..| ...++...|. +++++++
T Consensus 279 ~k~GiKgsnt~~v~f~~~ki~~envlG~~G~G~kva~nilnsgR----------~~~aaa~~G~----mkr~I~~~~d~~ 344 (634)
T KOG0137|consen 279 KKMGIKGSNTAEVHFEGVKIPIENVLGKPGDGFKVAMNILNSGR----------FGMAAALLGL----MKRIIEEAADYA 344 (634)
T ss_pred hhhcccccceeeeeeccccccHHHhcCCCCcchHHHHHHHccCC----------cchhHHHHHH----HHHHHHHHHHHh
Confidence 777776 3445677754 57899999999999999999998 8899999998 5555533
Q ss_pred ----cccceeeeeeccc---ccccccccc
Q psy5139 192 ----GLSLQILQFQNLS---SDMHMTGLA 213 (216)
Q Consensus 192 ----~fg~~i~~~Q~v~---ad~~~~~~~ 213 (216)
+||+++.+|-.+| +.|.+.+.+
T Consensus 345 ~~rtQ~g~~L~~~~l~q~k~~~m~~~~Ya 373 (634)
T KOG0137|consen 345 TNRTQFGKKLHDFGLIQEKVAEMASKVYA 373 (634)
T ss_pred hcceecCcchhhhhhHHHHHHHHHHHHHH
Confidence 3999999999999 666655443
No 21
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=99.78 E-value=2.9e-21 Score=156.48 Aligned_cols=197 Identities=22% Similarity=0.332 Sum_probs=143.3
Q ss_pred CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139 2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ 80 (216)
Q Consensus 2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e 80 (216)
.||+++.+|++|||.|.++.+.+.+.|++++.+.+++.++..|. +....+..+++++|+++|++++.+++.+ +++++|
T Consensus 44 ~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE 122 (375)
T cd01162 44 LGFGGIYIRDDVGGSGLSRLDASIIFEALSTGCVSTAAYISIHN-MCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTE 122 (375)
T ss_pred CCCCCcCCCHhhCCCCCCHHHHHHHHHHHHhhchhHHHHHHHhh-hHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecC
Confidence 59999999999999999999999999999999998876665554 4555678899999999999999999965 689999
Q ss_pred CCCCCCccHH-------------------------HHHHHHHHHHhhCC----Cce-eEeeechh-h-hHHHHHhcCCH-
Q psy5139 81 EYGGPGLSFM-------------------------TDILIVEEIARVDP----SVS-ILVDIQNT-L-VNDLIIKLGTT- 127 (216)
Q Consensus 81 ~~gG~~~~~~-------------------------~~~~v~e~lar~~~----~~~-~~v~~~~~-~-~~~~~~~~g~~- 127 (216)
+..|+|...+ .+.+++ +++.+. ... |+|+.+.+ + ......++|.+
T Consensus 123 ~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad~~~v--~a~~~~~~~~~~~~~lv~~~~~gv~v~~~~~~~g~~~ 200 (375)
T cd01162 123 PGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGDSDVYVV--MARTGGEGPKGISCFVVEKGTPGLSFGANEKKMGWNA 200 (375)
T ss_pred CCCCCChhhCEEEEEEeCCEEEEEEEEEEecCCCCCCEEEE--EEEecCCCCCceEEEEEeCCCCCeecCCcccccCCCC
Confidence 9888875311 122333 344321 122 55665432 1 11222333432
Q ss_pred -HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------ccc
Q psy5139 128 -EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GLS 194 (216)
Q Consensus 128 -~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~fg 194 (216)
...+..|+++ .++.++.++.|++.....+...| ..+++..+|. ++++++. +||
T Consensus 201 ~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r----------~~~aa~~lG~----a~~al~~~~~~a~~R~~fg 266 (375)
T cd01162 201 QPTRAVIFEDCRVPVENRLGGEGQGFGIAMAGLNGGR----------LNIASCSLGA----AQAALDLARAYLEERKQFG 266 (375)
T ss_pred CCeeEEEECceEecHHHcCCCCCchHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHhhhccC
Confidence 3455667764 45678888888877666666666 7788888998 6666543 499
Q ss_pred ceeeeeeccc---ccccccccccC
Q psy5139 195 LQILQFQNLS---SDMHMTGLASR 215 (216)
Q Consensus 195 ~~i~~~Q~v~---ad~~~~~~~~r 215 (216)
+||++||.|| +||.++++++|
T Consensus 267 ~~l~~~~~vq~~la~~~~~l~~a~ 290 (375)
T cd01162 267 KPLADFQALQFKLADMATELVASR 290 (375)
T ss_pred ccHHhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999 99999999876
No 22
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=99.78 E-value=4.1e-21 Score=155.49 Aligned_cols=197 Identities=23% Similarity=0.399 Sum_probs=142.5
Q ss_pred CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139 2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ 80 (216)
Q Consensus 2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e 80 (216)
+||+++.+|++|||.|+++.+...+.|++++.+.+ .+.+..|..++...+..+++++|+++|++.+.+|+.+ +++++|
T Consensus 42 ~G~~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~-~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE 120 (372)
T cd01160 42 QGLLGVGFPEEYGGIGGDLLSAAVLWEELARAGGS-GPGLSLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTE 120 (372)
T ss_pred CCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecC
Confidence 59999999999999999999999999999996555 3445445445566788999999999999999999965 689999
Q ss_pred CCCCCCccHH-------------------------HHHHHHHHHHhhCC------Cc-eeEeeechh-h-hHHHHHhcCC
Q psy5139 81 EYGGPGLSFM-------------------------TDILIVEEIARVDP------SV-SILVDIQNT-L-VNDLIIKLGT 126 (216)
Q Consensus 81 ~~gG~~~~~~-------------------------~~~~v~e~lar~~~------~~-~~~v~~~~~-~-~~~~~~~~g~ 126 (216)
+..|++...+ .+.+++ .++++. ++ .|+++.+.. + .......+|.
T Consensus 121 ~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~Ad~~~v--~a~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~ 198 (372)
T cd01160 121 PGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLADVVIV--VARTGGEARGAGGISLFLVERGTPGFSRGRKLKKMGW 198 (372)
T ss_pred CCCCCchhhCeEEEEEeCCEEEEeeEEEEecCCCccCEEEE--EEEeCCCCCCCCceEEEEEeCCCCCeecCCccccccC
Confidence 9888775311 123333 444432 22 266665432 2 2233445553
Q ss_pred H--HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------c
Q psy5139 127 T--EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------G 192 (216)
Q Consensus 127 ~--~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~ 192 (216)
+ ...+..|+++ .+..++.++.|+......+...+ ..+++..+|. ++.+++. +
T Consensus 199 ~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~~----------~~~aa~~lG~----a~~al~~a~~~a~~R~~ 264 (372)
T cd01160 199 KAQDTAELFFDDCRVPAENLLGEENKGFYYLMQNLPQER----------LLIAAGALAA----AEFMLEETRNYVKQRKA 264 (372)
T ss_pred CCCCeEEEEecceEccHHHcCCCCCchHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHhhhc
Confidence 3 3445667764 45678888888877666666666 7778888888 6655543 4
Q ss_pred ccceeeeeeccc---ccccccccccC
Q psy5139 193 LSLQILQFQNLS---SDMHMTGLASR 215 (216)
Q Consensus 193 fg~~i~~~Q~v~---ad~~~~~~~~r 215 (216)
||+||++||.|| +||.++++++|
T Consensus 265 ~g~~i~~~q~vq~~la~~~~~~~~a~ 290 (372)
T cd01160 265 FGKTLAQLQVVRHKIAELATKVAVTR 290 (372)
T ss_pred cCccHHhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999 99999998876
No 23
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=99.78 E-value=3.7e-21 Score=156.16 Aligned_cols=195 Identities=18% Similarity=0.253 Sum_probs=141.7
Q ss_pred CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHH-HhCCc-eeeecC
Q psy5139 2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRL-AQTDL-MGVEIP 79 (216)
Q Consensus 2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l-~~g~~-~~~~~~ 79 (216)
.||+++.+|++|||.|+++.+.+.+.|++++.+.+. ..+ ++......+..+++++|++++++++ .+|+. .+++++
T Consensus 49 ~Gl~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~~-~~~--~~~~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~t 125 (381)
T PRK12341 49 NGISMLGVPEEFGGTPADYVTQMLVLEEVSKCGAPA-FLI--TNGQCIHSMRRFGSAEQLRKTAESTLETGDPAYALALT 125 (381)
T ss_pred CCCCCcCCChhhCCCCcCHHHHHHHHHHHhhcChhH-HHH--hhhhhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEEEec
Confidence 599999999999999999999999999999998874 233 2223445578899999999999998 48885 578999
Q ss_pred CCCCCCCccHH-------------------------HHHHHHHHHHhhCC------Cce-eEeeechh-hhHHHHHhcCC
Q psy5139 80 QEYGGPGLSFM-------------------------TDILIVEEIARVDP------SVS-ILVDIQNT-LVNDLIIKLGT 126 (216)
Q Consensus 80 e~~gG~~~~~~-------------------------~~~~v~e~lar~~~------~~~-~~v~~~~~-~~~~~~~~~g~ 126 (216)
||..|+|...+ .+.+++ .++.+. .++ |+|+.+.+ +...+..++|.
T Consensus 126 Ep~~gsd~~~~~t~a~~~~gg~~lnG~K~~is~~~~Ad~~~v--~a~~~~~~~~~~~~~~~lV~~~~~gv~~~~~~~~G~ 203 (381)
T PRK12341 126 EPGAGSDNNSATTTYTRKNGKVYLNGQKTFITGAKEYPYMLV--LARDPQPKDPKKAFTLWWVDSSKPGIKINPLHKIGW 203 (381)
T ss_pred CCCCCCchhhCeeEEEEeCCEEEEEeEEEEEcCCccCCEEEE--EEEcCCCCCCCCceEEEEEeCCCCceeecccccccC
Confidence 99888875321 122333 444321 123 66776543 21234455554
Q ss_pred H--HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------c
Q psy5139 127 T--EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------G 192 (216)
Q Consensus 127 ~--~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~ 192 (216)
+ ......|+++ .++.++.++.|+......+...| ..+++..+|. ++.+++. +
T Consensus 204 ~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r----------~~~aa~~lG~----a~~al~~~~~~~~~R~~ 269 (381)
T PRK12341 204 HMLSTCEVYLDNVEVEESDLVGEEGMGFLNVMYNFEMER----------LINAARSLGF----AECAFEDAARYANQRIQ 269 (381)
T ss_pred CCCCceEEEECcEEecHHHcCCCCChHHHHHHHHHHhHH----------HHHHHHHHHH----HHHHHHHHHHHHHhhhC
Confidence 4 3445667764 36778888888877665666666 8888899998 5555543 4
Q ss_pred ccceeeeeeccc---ccccccccccC
Q psy5139 193 LSLQILQFQNLS---SDMHMTGLASR 215 (216)
Q Consensus 193 fg~~i~~~Q~v~---ad~~~~~~~~r 215 (216)
||+||.+||.|| ++|.++++++|
T Consensus 270 ~g~~i~~~~~v~~~la~~~~~~~aar 295 (381)
T PRK12341 270 FGKPIGHNQLIQEKLTLMAIKIENMR 295 (381)
T ss_pred CCccHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999 99999999886
No 24
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=99.77 E-value=3.4e-21 Score=156.99 Aligned_cols=199 Identities=30% Similarity=0.468 Sum_probs=152.2
Q ss_pred CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHh---hHHHHHHhcCChhHHHHHHHHHHhCCce-eee
Q psy5139 2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNT---LVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVE 77 (216)
Q Consensus 2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~---~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~ 77 (216)
.||+++.+|++|||.+.+......+.|++++.+.+.......+.. .....+..+++++|++++++++.+|+++ +++
T Consensus 51 ~G~~~~~~p~e~GG~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~~~~~ 130 (393)
T COG1960 51 AGLLGLTIPEEYGGLGLSPLEQAAVLEELARADAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELIGAFA 130 (393)
T ss_pred CCcccCCCChhhCCCCcchhHHHHHHHHHHhhCcchhhhHHHhccccccchHHHHHcCCHHHHHHhchhhhCCchhheee
Confidence 599999999999999999999999999999998876443332221 2333577899999999999999999665 789
Q ss_pred cCCCCCCCCccHHH--------------------------HHHHHHHHHhhCCC------ce-eEeeec--hhhhHHHHH
Q psy5139 78 IPQEYGGPGLSFMT--------------------------DILIVEEIARVDPS------VS-ILVDIQ--NTLVNDLII 122 (216)
Q Consensus 78 ~~e~~gG~~~~~~~--------------------------~~~v~e~lar~~~~------~~-~~v~~~--~~~~~~~~~ 122 (216)
++||.+|+|+.... ++.++ ++|++.. ++ |+|+.+ ..+....+.
T Consensus 131 ~tEp~~Gsd~~~~~~t~a~~~~g~~~lnG~K~~is~~~~ad~~~v--~Ar~~~~~~~~~gis~flV~~~~~~Gv~~~~~~ 208 (393)
T COG1960 131 LTEPGAGSDLASLRTTAAVRDDGDYVLNGQKIWISNAPVADWLLV--LARTDPAPGKHKGISLFLVPKDLTPGVSVGPIL 208 (393)
T ss_pred ccCCCCCcchhcCceeEEEecCCCEEEEeEEEEEcCCCCCCEEEE--EEEcCCcccccCceEEEEEeCCCCCCeeecccc
Confidence 99999999863211 22244 6777553 33 778765 244445555
Q ss_pred hc-CCH--HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec-----
Q psy5139 123 KL-GTT--EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC----- 191 (216)
Q Consensus 123 ~~-g~~--~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~----- 191 (216)
.. |.+ ...+.+|+++ .++++|+++.|++.+...++..| ..+++..+|. ++.+++.
T Consensus 209 ~~~G~r~~~~~~v~f~~v~vp~~~lig~~~~g~~~~~~~l~~~r----------~~~aa~~~G~----a~~al~~~~~ya 274 (393)
T COG1960 209 KKMGLRGSATGEVFFDDVRVPAENLLGEEGDGFKIAMETLNVER----------LGIAAQALGI----AEAALEEAVAYA 274 (393)
T ss_pred CcCCcCCCCeeEEEECCeeccHHHcCCcCCchHHHHHHhhchHH----------HHHHHHHHHH----HHHHHHHHHHHH
Confidence 55 544 5567788874 56789999999999999988888 8888888888 5555533
Q ss_pred ----cccceeeeeeccc---ccccccccccCC
Q psy5139 192 ----GLSLQILQFQNLS---SDMHMTGLASRF 216 (216)
Q Consensus 192 ----~fg~~i~~~Q~v~---ad~~~~~~~~r~ 216 (216)
+||+||++||.|| +||+++++++|+
T Consensus 275 ~~R~~fg~~i~~~~~vq~~la~~~~~~~a~r~ 306 (393)
T COG1960 275 RERKQFGRPIADFQLVQFKLADMAAELEAARL 306 (393)
T ss_pred HHhHhcCCchhhcHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999 999999998873
No 25
>PLN02876 acyl-CoA dehydrogenase
Probab=99.75 E-value=1.5e-20 Score=165.20 Aligned_cols=199 Identities=20% Similarity=0.256 Sum_probs=143.7
Q ss_pred CccccccCCCC------------------------CCCCCCCHHHHHHHHHHHHccCCChhHH-HHHHHhhHHHHHHhcC
Q psy5139 2 TTLLGVEIPQE------------------------YGGPGLSFMTDILIVEEIARVDPSVSIL-VDIQNTLVNDLIIKLG 56 (216)
Q Consensus 2 ~G~~~~~~p~~------------------------~GG~g~~~~~~~~~~ee~~~~~~~~~~~-~~~~~~~~~~~l~~~g 56 (216)
+||+++.+|++ |||.|++..+.+++.|++++.+.+.+.+ ...+.......|..+|
T Consensus 454 ~G~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~G~~~~~~~~~~Eelg~~~~~~~~~~~~~~~~~~~~~l~~~g 533 (822)
T PLN02876 454 EGLWNLWIPLDSAARARKLLFEDNKHMVSGDSADQLLGAGLSNLEYGYLCEIMGRSVWAPQVFNCGAPDTGNMEVLLRYG 533 (822)
T ss_pred cCcccCCCCchhhhhhhhcccccccccccccccccCCCCCCCHHHHHHHHHHHhccchHHHHhcccCcccccHHHHHHhC
Confidence 69999999995 9999999999999999999986543221 1111112334688999
Q ss_pred ChhHHHHHHHHHHhCCce-eeecCCCC-CCCCccHH---------------------------HHHHHHHHHHhhCC---
Q psy5139 57 TTEQKEKYLPRLAQTDLM-GVEIPQEY-GGPGLSFM---------------------------TDILIVEEIARVDP--- 104 (216)
Q Consensus 57 ~~~~~~~~l~~l~~g~~~-~~~~~e~~-gG~~~~~~---------------------------~~~~v~e~lar~~~--- 104 (216)
+++|++++++++.+|+++ +++++|+. +|++...+ .+.+++ ++++++
T Consensus 534 t~eqk~~~L~~l~~G~~~~~~a~tEp~~~gsd~~~~~t~a~~~g~g~vLnG~K~~vtga~~~~ad~~lv--~ar~~~~~~ 611 (822)
T PLN02876 534 NKEQQLEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIRRQGDSYVINGTKWWTSGAMDPRCRVLIV--MGKTDFNAP 611 (822)
T ss_pred CHHHHHHHHHHHhCCCceeEEEecCCCccCcccccceEEEEEcCCEEEEEeEEEEecCCCCCCCCEEEE--EEecCCCCC
Confidence 999999999999999976 78999996 67765311 112233 455432
Q ss_pred ---Cce-eEeeechh-hh-HHHHHhcCCHH----Hhhhhchhc---ccccccccccchhhhhhhhccccCCceeecccee
Q psy5139 105 ---SVS-ILVDIQNT-LV-NDLIIKLGTTE----QKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLS 171 (216)
Q Consensus 105 ---~~~-~~v~~~~~-~~-~~~~~~~g~~~----~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~ 171 (216)
..+ |+|+.+.. +. .....++|.+. ..+..|+++ .++.++.++.|++.+...+...| .
T Consensus 612 ~~~~~s~flV~~~~pGv~i~~~~~~~G~r~~~~~~~~v~fd~V~Vp~~~~lg~~g~g~~~~~~~l~~~r----------~ 681 (822)
T PLN02876 612 KHKQQSMILVDIQTPGVQIKRPLLVFGFDDAPHGHAEISFENVRVPAKNILLGEGRGFEIAQGRLGPGR----------L 681 (822)
T ss_pred CCCcceEEEEeCCCCCceeecccceeccCCCCCCeeEEEEcceeechhheecCCCchHHHHHHHHhhhH----------H
Confidence 233 67776543 22 23445566552 456788874 46788888888888777777777 8
Q ss_pred eeecCcccCCCcceeeeeec---------cccceeeeeeccc---ccccccccccCC
Q psy5139 172 HISSGCVGFDGQLKRWMVSC---------GLSLQILQFQNLS---SDMHMTGLASRF 216 (216)
Q Consensus 172 ~va~~~~g~~~~~~~~~~~~---------~fg~~i~~~Q~v~---ad~~~~~~~~r~ 216 (216)
.+++..+|. ++++++. +||+||++||.|| +||.+.++++|.
T Consensus 682 ~~aa~~vG~----a~~ale~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~leaar~ 734 (822)
T PLN02876 682 HHCMRLIGA----AERGMQLMVQRALSRKAFGKLIAQHGSFLSDLAKCRVELEQTRL 734 (822)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHhhhhcCCchhhCHHHHHHHHHHHHHHHHHHH
Confidence 888889998 6655543 4999999999999 999999998873
No 26
>PLN02526 acyl-coenzyme A oxidase
Probab=99.75 E-value=2.4e-20 Score=152.67 Aligned_cols=196 Identities=23% Similarity=0.298 Sum_probs=138.4
Q ss_pred CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139 2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ 80 (216)
Q Consensus 2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e 80 (216)
+||+++.+ ++|||.|+++.+.+.+.|++++.+.+.+..+..|..++...+..+++++|+++|++++.+++.+ +++++|
T Consensus 72 ~G~~~~~v-~~~GG~G~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE 150 (412)
T PLN02526 72 LGIAGGTI-KGYGCPGLSITASAIATAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTE 150 (412)
T ss_pred CCCCcCcc-cccCCCCcCHHHHHHHHHHHHhhCchHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecC
Confidence 59999999 9999999999999999999999988876555555545555788999999999999999999876 678999
Q ss_pred CCCCCCccHH-------------------------HHHHHHHHHHhhC--CCce-eEeeechh-h-hHHHHHhcCCH--H
Q psy5139 81 EYGGPGLSFM-------------------------TDILIVEEIARVD--PSVS-ILVDIQNT-L-VNDLIIKLGTT--E 128 (216)
Q Consensus 81 ~~gG~~~~~~-------------------------~~~~v~e~lar~~--~~~~-~~v~~~~~-~-~~~~~~~~g~~--~ 128 (216)
+..|++.... .+++++ +++++ ..+. |+|+.+.. + ......++|.+ .
T Consensus 151 p~~Gsd~~~~~t~a~~~~gg~~lnG~K~~vs~~~~Ad~~lv--~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~t~ 228 (412)
T PLN02526 151 PDYGSDASSLNTTATKVEGGWILNGQKRWIGNSTFADVLVI--FARNTTTNQINGFIVKKGAPGLKATKIENKIGLRMVQ 228 (412)
T ss_pred CCCCCChhhCeeEEEEECCEEEEEEEEeeecCCCccCEEEE--EEEeCCCCCeEEEEEcCCCCCeEcCCCCCccCcCCCC
Confidence 9877765321 122233 44432 2222 56665432 2 12223345544 3
Q ss_pred Hhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------cccce
Q psy5139 129 QKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GLSLQ 196 (216)
Q Consensus 129 ~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~fg~~ 196 (216)
..+..|+++ .++.++.. .+++.....+...| ..+++..+|. ++.+++. +||+|
T Consensus 229 s~~v~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r----------~~~aa~~lG~----a~~al~~a~~~a~~R~~fg~~ 293 (412)
T PLN02526 229 NGDIVLKDVFVPDEDRLPGV-NSFQDTNKVLAVSR----------VMVAWQPIGI----SMGVYDMCHRYLKERKQFGAP 293 (412)
T ss_pred eeEEEEeeEEECHHHhCCCc-ccHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHhCeeCCCc
Confidence 456677764 24556544 35555555555566 7788888888 5555543 49999
Q ss_pred eeeeeccc---ccccccccccC
Q psy5139 197 ILQFQNLS---SDMHMTGLASR 215 (216)
Q Consensus 197 i~~~Q~v~---ad~~~~~~~~r 215 (216)
|++||.+| +||.++++++|
T Consensus 294 i~~~q~vq~~la~~~~~l~aar 315 (412)
T PLN02526 294 LAAFQINQEKLVRMLGNIQAMF 315 (412)
T ss_pred hhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999886
No 27
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=99.72 E-value=1.2e-19 Score=146.99 Aligned_cols=198 Identities=31% Similarity=0.500 Sum_probs=142.9
Q ss_pred CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139 2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ 80 (216)
Q Consensus 2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e 80 (216)
.||+++.+|++|||.|.++.+.+.+.|++++.+.++++.+..|...+...+..++++++++++++.+.+|+.+ ++.++|
T Consensus 42 ~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se 121 (373)
T cd01158 42 LGLMGIPIPEEYGGAGLDFLAYAIAIEELAKVDASVAVIVSVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSE 121 (373)
T ss_pred CCCCcccCCHHHCCCCCCHHHHHHHHHHHHhhCccHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecC
Confidence 5999999999999999999999999999999999988777666545666788999999999999999999765 678899
Q ss_pred CCCCCCccHH-------------------------HHHHHHHHHHhhCC-----Cce-eEeeechh--hhHHHHHhcCCH
Q psy5139 81 EYGGPGLSFM-------------------------TDILIVEEIARVDP-----SVS-ILVDIQNT--LVNDLIIKLGTT 127 (216)
Q Consensus 81 ~~gG~~~~~~-------------------------~~~~v~e~lar~~~-----~~~-~~v~~~~~--~~~~~~~~~g~~ 127 (216)
+.+|++.... .+.+++ .++.+. .+. |+++.+.+ ........+|.+
T Consensus 122 ~~~gs~~~~~~~~a~~~~~g~~l~G~k~~vsg~~~ad~~lv--~a~~~~~~~~~~~~~~lvp~~~~gv~i~~~~~~~G~~ 199 (373)
T cd01158 122 PGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEADFYIV--FAVTDPSKGYRGITAFIVERDTPGLSVGKKEDKLGIR 199 (373)
T ss_pred CCCCCCHHHCEeEEEEeCCEEEEeeEEEEEcCCCcCCEEEE--EEEcCCCCCCCceEEEEEcCCCCCeecCCcccccccC
Confidence 8877764211 122332 344321 123 56665432 122223334433
Q ss_pred --HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------cc
Q psy5139 128 --EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GL 193 (216)
Q Consensus 128 --~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~f 193 (216)
...+..|+++ .++.++.++.|+......+...+ ...++..+|. ++.+++. .|
T Consensus 200 g~~s~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r----------~~~~a~~lG~----a~~~l~~~~~~~~~R~~~ 265 (373)
T cd01158 200 GSSTTELIFEDVRVPKENILGEEGEGFKIAMQTLDGGR----------IGIAAQALGI----AQAALDAAVDYAKERKQF 265 (373)
T ss_pred CCCceEEEeCcEEecHHHcCCCCCchHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHhCccc
Confidence 3445667764 35678888888877665666666 7778888888 5555533 49
Q ss_pred cceeeeeeccc---ccccccccccC
Q psy5139 194 SLQILQFQNLS---SDMHMTGLASR 215 (216)
Q Consensus 194 g~~i~~~Q~v~---ad~~~~~~~~r 215 (216)
|+||.+||.|| +||.+.++++|
T Consensus 266 g~~~~~~~~v~~~la~~~~~l~aa~ 290 (373)
T cd01158 266 GKPIADFQGIQFKLADMATEIEAAR 290 (373)
T ss_pred CCcHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999998876
No 28
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=99.71 E-value=4.3e-19 Score=145.15 Aligned_cols=196 Identities=19% Similarity=0.229 Sum_probs=140.2
Q ss_pred CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139 2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ 80 (216)
Q Consensus 2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e 80 (216)
.||+++.+|++|||.|.++.+...+.|++++.+.++++.+..+ .....+..+++++|+++|++.+.+|+.+ +++++|
T Consensus 48 ~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~s~~~~~~~~--~~~~~l~~~g~~~~~~~~l~~i~~G~~~~~~a~tE 125 (407)
T cd01153 48 AGWMALGVPEEYGGQGLPITVYSALAEIFSRGDAPLMYASGTQ--GAAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTE 125 (407)
T ss_pred CCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHh--HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecC
Confidence 5999999999999999999999999999999988877655543 3345678899999999999999998865 789999
Q ss_pred CCCCCCccHH---------------------H---------HHHHHHHHHhhCC------Cc-eeEeeech------hh-
Q psy5139 81 EYGGPGLSFM---------------------T---------DILIVEEIARVDP------SV-SILVDIQN------TL- 116 (216)
Q Consensus 81 ~~gG~~~~~~---------------------~---------~~~v~e~lar~~~------~~-~~~v~~~~------~~- 116 (216)
+.+|++...+ + +..++ +++++. ++ .|+|+.+. .+
T Consensus 126 p~~gsd~~~~~t~a~~~~~ggy~l~G~K~~is~~~~a~~~~~~~~v--~a~~~~~~~~~~~~~~flVp~~~~~~~~~gv~ 203 (407)
T cd01153 126 PDAGSDLGALRTKAVYQADGSWRINGVKRFISAGEHDMSENIVHLV--LARSEGAPPGVKGLSLFLVPKFLDDGERNGVT 203 (407)
T ss_pred CCCCCCcccceEEEEECCCCcEEEeeEEEEEeCCCcccccccEEEE--EEeCCCCCCCCCceEEEEEeccCcCCCCCCeE
Confidence 9888764211 0 01122 455331 22 36777652 22
Q ss_pred hHHHHHhcCCH--HHhhhhchhcccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---
Q psy5139 117 VNDLIIKLGTT--EQKEKYLPRLAQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC--- 191 (216)
Q Consensus 117 ~~~~~~~~g~~--~~~~~~l~~~~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~--- 191 (216)
......++|.+ ...+..|+++.-..++.++.|+......+...| ..+++..+|. ++.+++.
T Consensus 204 i~~~~~~~G~r~t~s~~v~f~~v~Vp~lg~~~~g~~~~~~~l~~~r----------~~~aa~~lG~----a~~al~~a~~ 269 (407)
T cd01153 204 VARIEEKMGLHGSPTCELVFDNAKGELIGEEGMGLAQMFAMMNGAR----------LGVGTQGTGL----AEAAYLNALA 269 (407)
T ss_pred eccchhccCCCCCCeEEEEEcCEEEeeeCCCCccHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHH
Confidence 22334455555 345667776543377888888887777777766 8888888888 6666644
Q ss_pred ------cccce--------eeeeeccc---ccccccccccC
Q psy5139 192 ------GLSLQ--------ILQFQNLS---SDMHMTGLASR 215 (216)
Q Consensus 192 ------~fg~~--------i~~~Q~v~---ad~~~~~~~~r 215 (216)
+||+| |.++|.|| +||.++++++|
T Consensus 270 ~a~~R~~fg~~i~~~~~~~~~~~~~iq~~la~~~a~~~a~~ 310 (407)
T cd01153 270 YAKERKQGGDLIKAAPAVTIIHHPDVRRSLMTQKAYAEGSR 310 (407)
T ss_pred HHHhCeecCCcCccccccccccCHHHHHHHHHHHHHHHHHH
Confidence 49999 56666676 99999988776
No 29
>KOG0138|consensus
Probab=99.69 E-value=1.2e-18 Score=130.77 Aligned_cols=197 Identities=23% Similarity=0.298 Sum_probs=131.6
Q ss_pred CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139 2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ 80 (216)
Q Consensus 2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e 80 (216)
+|++|.++ +.||-.|.+.+...++..|+.|.+.+...++++++.++...|..+|+++||++|+|.++++.++ ++.++|
T Consensus 98 mGvlG~ti-kGYGCaG~S~vaygl~~rEveRVDs~yrs~~sVqsSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLTE 176 (432)
T KOG0138|consen 98 MGVLGPTI-KGYGCAGVSSVAYGLLAREVERVDSGYRSAMSVQSSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLTE 176 (432)
T ss_pred cccccCcc-cCcCCCchHHHHHHHHHHHHHHhhhhchhhhhhhhhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEeccC
Confidence 57777777 7799999999999999999999999988888888889999999999999999999999999998 579999
Q ss_pred CCCCCCccHH---------------------------HHHHHHHHHHhh--CCCc-eeEeeechh-hhH-HHHHhcCCHH
Q psy5139 81 EYGGPGLSFM---------------------------TDILIVEEIARV--DPSV-SILVDIQNT-LVN-DLIIKLGTTE 128 (216)
Q Consensus 81 ~~gG~~~~~~---------------------------~~~~v~e~lar~--~~~~-~~~v~~~~~-~~~-~~~~~~g~~~ 128 (216)
|..|||.+.+ .+++++ .||- +..+ .|+++.+.. ... ...-+++-+.
T Consensus 177 Pn~GSdpsgmeT~At~~e~~ktyklNGsKtWI~nsp~aDl~vv--wAr~~t~n~I~GFi~~k~~~GL~apkI~gK~sLRa 254 (432)
T KOG0138|consen 177 PNHGSDPSGMETRATYDESNKTYKLNGSKTWITNSPMADLFVV--WARCETDNKIRGFILEKGMRGLSAPKIEGKFSLRA 254 (432)
T ss_pred CCCCCCcccccceeEEccCCceEEECCeeeeecCCcccceEEE--EEecccCCceeeEEEecCCCCCcCCCcCCeeeeee
Confidence 9999998633 244444 4442 2222 255554321 111 1112222221
Q ss_pred H--hhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCc----ceeeeeec-cccceee
Q psy5139 129 Q--KEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQ----LKRWMVSC-GLSLQIL 198 (216)
Q Consensus 129 ~--~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~----~~~~~~~~-~fg~~i~ 198 (216)
. ....++++ .++++ ....++...... ||-.+..|+-+.+|..+. +.++.+++ +||+|++
T Consensus 255 s~tG~Ilmd~V~VPeE~~L-Pg~~s~qgpf~c----------LnnaR~giAWg~lGase~c~~~arqY~ldRkQFG~PLA 323 (432)
T KOG0138|consen 255 SATGMILMDGVEVPEENLL-PGASSLQGPFGC----------LNNARYGIAWGALGASEFCLHTARQYTLDRKQFGRPLA 323 (432)
T ss_pred cccCceeecCCcCChhhcC-CCccccCCchhh----------hhhhhhheeehhchhHHHHHHHHHHHHHHHHHhCCchh
Confidence 1 11222322 22332 111222222333 344449999999998333 23344433 5999999
Q ss_pred eeeccc---cccccccc
Q psy5139 199 QFQNLS---SDMHMTGL 212 (216)
Q Consensus 199 ~~Q~v~---ad~~~~~~ 212 (216)
.||.+| |||.+++.
T Consensus 324 anQL~Q~Kladmltei~ 340 (432)
T KOG0138|consen 324 ANQLIQKKLADMLTEIT 340 (432)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 999999 99988764
No 30
>KOG0139|consensus
Probab=99.68 E-value=1.8e-16 Score=121.16 Aligned_cols=122 Identities=39% Similarity=0.612 Sum_probs=106.4
Q ss_pred hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139 59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA 138 (216)
Q Consensus 59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~ 138 (216)
..+...++.+.+.|++++.+||++||++.++....+++|++++.|++++..|+.++.+...++..+|+++|++.|+|...
T Consensus 68 ~~~~~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk~d~sv~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~~ 147 (398)
T KOG0139|consen 68 RYPASVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISKVDASVGVIVDVQNTLYLPLIIQFGTEEQKEKYLPKLT 147 (398)
T ss_pred cCCHHHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHHhccCccceeEEEecccccchHHHHhCcHHHHhhhcchhh
Confidence 35566889999999999999999999999999999999999999999998898888888899999999999998888765
Q ss_pred cc-----cccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139 139 QT-----DVSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF 180 (216)
Q Consensus 139 ~~-----~lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~ 180 (216)
.. .+++++.|+|.........+ +++|+|||.|.|++++..+.
T Consensus 148 ~d~vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWItN~~~A~ 195 (398)
T KOG0139|consen 148 GDLVGSFALSEPGAGSDAFALKTTAKKDGDDYVINGSKMWITNAGEAD 195 (398)
T ss_pred ccccceeeecCCCCCcchHHhhhhHhhcCCeEEEecceeeecCCcccc
Confidence 44 36788999998655555544 88999999999999998765
No 31
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=99.67 E-value=9.9e-19 Score=141.83 Aligned_cols=196 Identities=14% Similarity=0.135 Sum_probs=133.3
Q ss_pred CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCceeeecCCC
Q psy5139 2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLMGVEIPQE 81 (216)
Q Consensus 2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~e~ 81 (216)
.||+++.+|++|||.|+++.+...+.|++++.+.+++..+..|. .....+..+++++|++++++.+.++.+++.+++|+
T Consensus 34 ~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~-~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~a~tE~ 112 (377)
T cd01163 34 SGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHF-GFVEALLLAGPEQFRKRWFGRVLNGWIFGNAVSER 112 (377)
T ss_pred CCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH-HHHHHHHhcCcHHHHHHHHHHHhCCCeEEEeecCC
Confidence 59999999999999999999999999999999999887665554 33457888999999999999999999888888887
Q ss_pred CCCCCcc-------------------H-----HHHHHHHHHHHhhCC-Cc-eeEeeechh-h-hHHHHHhcCCH--HHhh
Q psy5139 82 YGGPGLS-------------------F-----MTDILIVEEIARVDP-SV-SILVDIQNT-L-VNDLIIKLGTT--EQKE 131 (216)
Q Consensus 82 ~gG~~~~-------------------~-----~~~~~v~e~lar~~~-~~-~~~v~~~~~-~-~~~~~~~~g~~--~~~~ 131 (216)
..|+... + ..+++++ .++++. .. .|+|+.+.+ + ......++|.+ ...+
T Consensus 113 ~~~~~~~~~~~~~~~~~g~~lnG~K~~is~a~~Ad~~~v--~a~~~~~~~~~~lV~~~~~Gv~i~~~~~~~G~~~~~s~~ 190 (377)
T cd01163 113 GSVRPGTFLTATVRDGGGYVLNGKKFYSTGALFSDWVTV--SALDEEGKLVFAAVPTDRPGITVVDDWDGFGQRLTASGT 190 (377)
T ss_pred CCCCCCCceEEEEecCCEEEEeceEEeecCCccceEEEE--EEEcCCCcEEEEEEeCCCCceeecCCcccccCccCCcce
Confidence 6542100 1 1122333 455432 23 367776542 2 22223445543 3456
Q ss_pred hhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec----------cccc---
Q psy5139 132 KYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC----------GLSL--- 195 (216)
Q Consensus 132 ~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~----------~fg~--- 195 (216)
..|+++ .++.++.++.++. ........+ ..+++..+|. ++.+++. .||+
T Consensus 191 v~f~~v~Vp~~~~lg~~~~g~~-~~~~~~~~~----------l~~aa~~lG~----a~~al~~~~~~~~~R~~~~g~~~~ 255 (377)
T cd01163 191 VTFDNVRVEPDEVLPRPNAPDR-GTLLTAIYQ----------LVLAAVLAGI----ARAALDDAVAYVRSRTRPWIHSGA 255 (377)
T ss_pred EEEeeEEECHHHccCCCccccc-cccccHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHhcCCCCCcCCc
Confidence 677764 4567777776654 111111222 6667778888 5555433 3665
Q ss_pred -eeeeeeccc---ccccccccccC
Q psy5139 196 -QILQFQNLS---SDMHMTGLASR 215 (216)
Q Consensus 196 -~i~~~Q~v~---ad~~~~~~~~r 215 (216)
++.++|.|| +||.++++++|
T Consensus 256 ~~~~~~~~v~~~la~~~~~l~aar 279 (377)
T cd01163 256 ESARDDPYVQQVVGDLAARLHAAE 279 (377)
T ss_pred cccccCcHHHHHHHHHHHHHHHHH
Confidence 468899999 99999999887
No 32
>KOG0141|consensus
Probab=99.65 E-value=8.1e-16 Score=116.09 Aligned_cols=121 Identities=26% Similarity=0.485 Sum_probs=107.5
Q ss_pred HHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhccc
Q psy5139 60 QKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQ 139 (216)
Q Consensus 60 ~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~~ 139 (216)
+-+++|+++.+-+++++..||++||++.++.+.+++.|+++|..+..+.....|...+++-+.+.|+++|++.|+|.+.+
T Consensus 75 ~~r~~WkklG~~gllGita~~~~GG~G~~y~~h~ivmEE~sra~g~v~lsygaHSnlcinqlvrnGseeQkekylPkl~s 154 (421)
T KOG0141|consen 75 DLREFWKKLGKQGLLGITAPEEYGGSGGGYLSHCIVMEEISRASGGVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLIS 154 (421)
T ss_pred hHHHHHHHhhhcCcccccchhhhCCCchhHHHHHHHHHHHHhhcCCcccccccccchHHHHHHhcCCHHHHHhhhhhhhc
Confidence 45679999999999999999999999999999999999999998776665666667888889999999999999999876
Q ss_pred cc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139 140 TD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF 180 (216)
Q Consensus 140 ~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~ 180 (216)
+. ..+++.|++.....+++++ +++|+|||.|.|+++++.++
T Consensus 155 Ge~iGalAMsEp~AGSDvv~mK~~Aek~g~~yiLNGsK~witNG~~ad 202 (421)
T KOG0141|consen 155 GEHIGALAMSEPGAGSDVVSMKLKAEKKGDDYILNGSKFWITNGPDAD 202 (421)
T ss_pred ccccceeeecCCCCCCccceeeeeceecCCcEEecCcEEEEecCCCCc
Confidence 53 3688999999888888888 88999999999999999876
No 33
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=99.65 E-value=2.1e-18 Score=141.35 Aligned_cols=194 Identities=17% Similarity=0.171 Sum_probs=139.0
Q ss_pred CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCC----c-eee
Q psy5139 2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTD----L-MGV 76 (216)
Q Consensus 2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~----~-~~~ 76 (216)
.||+++ +|+++|+.| ........+.++..+......+..+. .+...|..+|+++| +++++++.+++ + .++
T Consensus 77 ~G~~~~-~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~l~~~g~~~~-~~~l~~l~~g~~~~~~~~~~ 151 (418)
T cd01154 77 EGVINI-EDGPAGEGR--RHVHFAAGYLLSDAAAGLLCPLTMTD-AAVYALRKYGPEEL-KQYLPGLLSDRYKTGLLGGT 151 (418)
T ss_pred cCCccC-CchhhCCCc--HHHHHHHHHHHHhcchhccCcHHHHH-HHHHHHHHhCcHHH-HHHHHHHhCCCcccchhhee
Confidence 488888 777777655 34445566666666544433333333 57778999998886 56999999985 4 478
Q ss_pred ecCCCCCCCCccHH-------------------------HHHHHHHHHHhhCC------Cce-eEeeech------hh-h
Q psy5139 77 EIPQEYGGPGLSFM-------------------------TDILIVEEIARVDP------SVS-ILVDIQN------TL-V 117 (216)
Q Consensus 77 ~~~e~~gG~~~~~~-------------------------~~~~v~e~lar~~~------~~~-~~v~~~~------~~-~ 117 (216)
+++||.+|||+..+ .+..++ ++|+++ +++ |+|+.+. .+ +
T Consensus 152 ~~TEp~~GSD~~~~~T~A~~~~g~~~~LnG~K~f~s~a~Ad~~lv--~Art~~~~~~~~gls~flVp~~~~~~~~~Gv~i 229 (418)
T cd01154 152 WMTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAPLADAALV--LARPEGAPAGARGLSLFLVPRLLEDGTRNGYRI 229 (418)
T ss_pred eecCCCcccchhhCeEEEEECCCCcEEEEEEEEEecCcccCEEEE--EEECCCCCCCCCcEEEEEEeccCCCCCCCCeEe
Confidence 99999999987421 122333 667652 234 7787643 12 2
Q ss_pred HHHHHhcCCH--HHhhhhchhcccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec----
Q psy5139 118 NDLIIKLGTT--EQKEKYLPRLAQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---- 191 (216)
Q Consensus 118 ~~~~~~~g~~--~~~~~~l~~~~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---- 191 (216)
.....++|.+ ...+++|+++.++++|.++.|++.+...++..| ..+++..+|. ++++++.
T Consensus 230 ~~~~~~~G~r~~~~~ev~f~dv~~~~lG~~g~G~~~~~~~l~~~R----------~~~aa~~~G~----a~~al~~a~~y 295 (418)
T cd01154 230 RRLKDKLGTRSVATGEVEFDDAEAYLIGDEGKGIYYILEMLNISR----------LDNAVAALGI----MRRALSEAYHY 295 (418)
T ss_pred cccccccCCCCCCeEEEEecCcCccccCCCCccHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHH
Confidence 2344667776 567889999888899999999998888888887 8888888888 5555432
Q ss_pred -----cccceeeeeeccc---ccccccccccCC
Q psy5139 192 -----GLSLQILQFQNLS---SDMHMTGLASRF 216 (216)
Q Consensus 192 -----~fg~~i~~~Q~v~---ad~~~~~~~~r~ 216 (216)
+||+||.+||.|| +||.++++++|+
T Consensus 296 a~~R~~fg~~l~~~~~v~~~La~~~~~~eaar~ 328 (418)
T cd01154 296 ARHRRAFGKPLIDHPLMRRDLAEMEVDVEAATA 328 (418)
T ss_pred HhcCcCCCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999 999999998773
No 34
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=99.63 E-value=5e-18 Score=141.40 Aligned_cols=194 Identities=14% Similarity=0.118 Sum_probs=134.3
Q ss_pred CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCC---------
Q psy5139 2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTD--------- 72 (216)
Q Consensus 2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~--------- 72 (216)
.||.++.++++++ .+..-...+.+-+-....+ ...+..+...++..+.++++++|+++|+|++.+++
T Consensus 98 ~g~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~-g~~cp~~mT~~a~~~l~~~~~e~~~~~lp~l~sg~~~~~~~~~~ 173 (538)
T PRK11561 98 NRVHNLAWEEDAR---SGAFVARAARFMLHAQVEA-GTLCPITMTFAATPLLLQMLPAPFQDWLTPLLSDRYDSHLLPGG 173 (538)
T ss_pred cCCccCCCCCccC---chHHHHHHHHHHHHhhhhH-HhhchHHHHHHHHHHHHhcCHHHHHHHHHHHhCCCcccccccch
Confidence 3677778877765 2222222233333222111 11122222345556777888999999999999985
Q ss_pred ----c-eeeecCCCCCCCCccHH-------------------------HHHHHHHHHHhhCCCce-eEeeechh------
Q psy5139 73 ----L-MGVEIPQEYGGPGLSFM-------------------------TDILIVEEIARVDPSVS-ILVDIQNT------ 115 (216)
Q Consensus 73 ----~-~~~~~~e~~gG~~~~~~-------------------------~~~~v~e~lar~~~~~~-~~v~~~~~------ 115 (216)
+ .+++++||.+|||+..+ .+..++ ++|++.+++ |+|+...+
T Consensus 174 ~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~gg~w~LnG~K~fiSa~~AD~~lV--lArt~~Gls~FlVp~~~p~g~~nG 251 (538)
T PRK11561 174 QKRGLLIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHKWFFSVPQSDAHLV--LAQAKGGLSCFFVPRFLPDGQRNA 251 (538)
T ss_pred hhhhheeEEEecCCCCCCchhhCeeEEEECCCCeEEEEEEEEEEEchhhCEEEE--EEEECCceEEEEEECCCCCCCCCc
Confidence 2 47899999999996321 133444 677766665 78876432
Q ss_pred h-hHHHHHhcCCH--HHhhhhchhcccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec-
Q psy5139 116 L-VNDLIIKLGTT--EQKEKYLPRLAQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC- 191 (216)
Q Consensus 116 ~-~~~~~~~~g~~--~~~~~~l~~~~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~- 191 (216)
+ +.....++|.+ ...++.|+++..+++|+++.|++.+...++.+| ..++..++|. ++.+++.
T Consensus 252 v~i~rl~~klG~r~~~t~ev~f~dv~~~llG~~g~G~~~i~~~l~~~R----------l~~a~~a~G~----a~~Al~~A 317 (538)
T PRK11561 252 IRLERLKDKLGNRSNASSEVEFQDAIGWLLGEEGEGIRLILKMGGMTR----------FDCALGSHGL----MRRAFSVA 317 (538)
T ss_pred eEEecccccccCCCCceeEEEECCHHHHHCCCCCchHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHH
Confidence 2 23456788877 356788999888899999999999888888887 8888888998 6665533
Q ss_pred --------cccceeeeeeccc---ccccccccccC
Q psy5139 192 --------GLSLQILQFQNLS---SDMHMTGLASR 215 (216)
Q Consensus 192 --------~fg~~i~~~Q~v~---ad~~~~~~~~r 215 (216)
+||+||.+||.|| +||.+++|++|
T Consensus 318 ~~yA~~R~~FG~~L~~~q~vq~~LAdm~~~ieaar 352 (538)
T PRK11561 318 IYHAHQRQVFGKPLIEQPLMRQVLSRMALQLEGQT 352 (538)
T ss_pred HHHHHhCccCCCccccCHHHHHHHHHHHHHHHHHH
Confidence 4999999999999 99999999876
No 35
>KOG0140|consensus
Probab=99.59 E-value=2.8e-15 Score=113.14 Aligned_cols=125 Identities=26% Similarity=0.301 Sum_probs=107.0
Q ss_pred cCChhHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhc
Q psy5139 55 LGTTEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYL 134 (216)
Q Consensus 55 ~g~~~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l 134 (216)
.-+.|+|.+++++..+.|+.+..+||.+||++++..+..++.|+++..+.++...+..+ .+...++..+|+++|++.|+
T Consensus 55 Dk~ge~P~~iirkA~~lG~~~~~ip~~~GG~Gls~l~t~lI~E~LayGCtg~~~~I~~~-~l~~~pi~~~gneeqKkk~l 133 (408)
T KOG0140|consen 55 DKSGEFPWEIIRKAHELGFMNTYIPEDYGGLGLSRLDTCLIFEALAYGCTGIQTAISIH-NLAAWPIILSGNEEQKKKYL 133 (408)
T ss_pred cccCCCcHHHHHHHHHcccCcccCccccCCCCchhHHHHHHHHHHHccchhHHHHHhcc-chhhhhehhcCcHHHHHhhh
Confidence 34679999999999999999999999999999999999999999999988866544444 46778889999999999999
Q ss_pred hhcc------cccccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139 135 PRLA------QTDVSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF 180 (216)
Q Consensus 135 ~~~~------~~~lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~ 180 (216)
+++. +..+.+|+.|+++..-....++ +|.|+|||+|.||+++..+.
T Consensus 134 g~l~~~p~~asYcvTEPgAGSDvagikTka~KkGDeYiiNGsKawItg~G~an 186 (408)
T KOG0140|consen 134 GRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKKGDEYIINGSKAWITGAGHAN 186 (408)
T ss_pred hhhhcchhhhhhhccCCCCCcchhhhhhhhhhcCCEEEEcCceeeeecCCccc
Confidence 8764 3457899999998666666666 99999999999999998754
No 36
>PLN02636 acyl-coenzyme A oxidase
Probab=99.54 E-value=8.6e-17 Score=137.96 Aligned_cols=196 Identities=19% Similarity=0.250 Sum_probs=138.6
Q ss_pred CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139 2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ 80 (216)
Q Consensus 2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e 80 (216)
.|++++.+|++ ++.+...+.|++++.+.+++..+..|..+....|..+|+++|+++|+|.+.+++.+ +++++|
T Consensus 108 ~g~~~~~~~~~------~~~~~~~~~e~l~~~d~s~~~~~~vh~~l~~~~I~~~GTeeQk~~~L~~~~~ge~ig~fA~TE 181 (686)
T PLN02636 108 AGIRPMKYLVE------DPAKYFAITEAVGSVDMSLGIKLGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYPGCFAMTE 181 (686)
T ss_pred cCccccccccC------CHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCChhhhhhccC
Confidence 47788888876 78889999999999888776656667667788899999999999999999999986 689999
Q ss_pred CCCCCCccHHH---------------------------------HHHHHHHHHhhC-----------CCce-eEeeech-
Q psy5139 81 EYGGPGLSFMT---------------------------------DILIVEEIARVD-----------PSVS-ILVDIQN- 114 (216)
Q Consensus 81 ~~gG~~~~~~~---------------------------------~~~v~e~lar~~-----------~~~~-~~v~~~~- 114 (216)
+.+|||+..++ +..++ +||++ .++. |+|+...
T Consensus 182 pghGSdv~~leTtA~~d~~~defVLntP~~~g~K~wI~na~~~ad~~vV--~Arl~~~~~~~~~~~~~Gi~~FlVp~r~~ 259 (686)
T PLN02636 182 LHHGSNVQGLQTTATFDPLTDEFVINTPNDGAIKWWIGNAAVHGKFATV--FARLKLPTHDSKGVSDMGVHAFIVPIRDM 259 (686)
T ss_pred CCcccCcccCeeEEEEcCCCCeEEECCCCCCeEEEeecCCcccCCEEEE--EEEecCCCCCccCCCCCCeeEEEEecCcc
Confidence 99999874211 12233 56543 1233 7787541
Q ss_pred -------hh-hHHHHHhcCCH--HHhhhhchhc---ccccccc----------------cccchhhhhhhhccccCCcee
Q psy5139 115 -------TL-VNDLIIKLGTT--EQKEKYLPRL---AQTDVSR----------------TSRGYKALEWHAFYGRTDSLP 165 (216)
Q Consensus 115 -------~~-~~~~~~~~g~~--~~~~~~l~~~---~~~~lg~----------------~~~g~~~~~~~~~~~~~~~~~ 165 (216)
++ +.....++|.+ ......|+++ .+++|+. ++.|+......+..+|
T Consensus 260 ~~~~~~PGV~v~~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~g~v~~~G~y~~~~~~~~~gf~~~~~~l~~~R----- 334 (686)
T PLN02636 260 KTHQVLPGVEIRDCGHKVGLNGVDNGALRFRSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGR----- 334 (686)
T ss_pred ccCCCCCCeEeccCCCccCCCCCcceEEEEeeEEECHHHhccccccccCCCcccccCCCcchHHHHHHHHHHHHH-----
Confidence 11 22334566654 3445677765 4566642 2457777777777777
Q ss_pred eccceeeeecCcccCCCcceeee-----eeccccce------eeeeeccc---ccccccccccC
Q psy5139 166 LNDHLSHISSGCVGFDGQLKRWM-----VSCGLSLQ------ILQFQNLS---SDMHMTGLASR 215 (216)
Q Consensus 166 l~g~k~~va~~~~g~~~~~~~~~-----~~~~fg~~------i~~~Q~v~---ad~~~~~~~~r 215 (216)
+.+++.++|....+...+ .+.+||+| |.+||.+| ++|.+.++++|
T Consensus 335 -----~~iaa~a~g~a~~Al~iAvrYa~~R~qFg~p~~~e~~I~d~q~vQ~~La~~la~~~a~~ 393 (686)
T PLN02636 335 -----VGLAYGSVGVLKASNTIAIRYSLLRQQFGPPKQPEISILDYQSQQHKLMPMLASTYAFH 393 (686)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHcCEeCCCCCCCCCcccccHHHHHHHHHHHHHHHHHH
Confidence 999999988833322111 24469999 99999999 99998888754
No 37
>PLN02312 acyl-CoA oxidase
Probab=99.50 E-value=3e-16 Score=134.37 Aligned_cols=199 Identities=15% Similarity=0.173 Sum_probs=136.2
Q ss_pred CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139 2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ 80 (216)
Q Consensus 2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e 80 (216)
.|+++..+|++ |.+ +....+++.|++++.+.++...+..|..+....|..+|+++|+++|++.+.+++.+ +++++|
T Consensus 117 ~g~~~~~~pe~--g~~-~~~~~~~~~Eel~~~d~s~~~~~~vh~~l~~~~I~~~GTeeqk~~~L~~~~~ge~ig~fA~TE 193 (680)
T PLN02312 117 RGVFRGWLTET--GPE-AELRKLALLEVIGIYDHSLAIKLGVHFFLWGGAIKFLGTKRHHDKWLKDTEDYVVKGCFAMTE 193 (680)
T ss_pred hhhcCCCCCCC--CCc-cHHHHHHHHHHHHHhcchHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEeeecC
Confidence 47888889985 333 67788999999999887765556666667778899999999999999999999986 689999
Q ss_pred CCCCCCccHHH---------------------------------HHHHHHHHHhhCC-----Cce-eEeee---c---hh
Q psy5139 81 EYGGPGLSFMT---------------------------------DILIVEEIARVDP-----SVS-ILVDI---Q---NT 115 (216)
Q Consensus 81 ~~gG~~~~~~~---------------------------------~~~v~e~lar~~~-----~~~-~~v~~---~---~~ 115 (216)
+.+||++..++ +..++ +||+.. ++. |+|+. + .+
T Consensus 194 pghGSdv~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~~~vV--~Arl~~~~~~~Gv~~FlV~ird~~~~~~P 271 (680)
T PLN02312 194 LGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIV--FSQLHINGKNEGVHAFIAQIRDQDGNICP 271 (680)
T ss_pred CCcCcchhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccCCEEEE--EEEECCCCCCCCeEEEEEeecCCCCCCCC
Confidence 99999864211 12223 455421 233 66652 1 11
Q ss_pred --hhHHHHHhcCCH--HHhhhhchhc---ccccccc----------------cccchhhhhhhhccccCCceeeccceee
Q psy5139 116 --LVNDLIIKLGTT--EQKEKYLPRL---AQTDVSR----------------TSRGYKALEWHAFYGRTDSLPLNDHLSH 172 (216)
Q Consensus 116 --~~~~~~~~~g~~--~~~~~~l~~~---~~~~lg~----------------~~~g~~~~~~~~~~~~~~~~~l~g~k~~ 172 (216)
.+.....++|.+ +.....|+++ .+++|+. ++.|+..+...+...| +.
T Consensus 272 GV~ig~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~~~V~~~G~y~~~~~~~~~gf~~~~~~l~~~R----------~~ 341 (680)
T PLN02312 272 NIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKYVSAIKDPDQRFGAFLAPLTSGR----------VT 341 (680)
T ss_pred CEEeccCCCcccccCCCceEEEEccEEECHHHhCCccceeCCCCceecCCCCccchHHHHHHHHHHHH----------HH
Confidence 122334566644 3445677775 4666663 4567777667777777 99
Q ss_pred eecCcccCCCcceeee-----eeccccc----e---eeeeeccc---ccccccccccC
Q psy5139 173 ISSGCVGFDGQLKRWM-----VSCGLSL----Q---ILQFQNLS---SDMHMTGLASR 215 (216)
Q Consensus 173 va~~~~g~~~~~~~~~-----~~~~fg~----~---i~~~Q~v~---ad~~~~~~~~r 215 (216)
+++.++|....+...+ .+.+||+ | |.+||.+| ++|.+++++++
T Consensus 342 iaa~a~g~a~~Al~iAvrYa~~R~QFg~~~~~~E~~I~dyq~~Q~rLa~~la~~~a~~ 399 (680)
T PLN02312 342 IAVSAIYSSKVGLAIAIRYSLSRRAFSVTPNGPEVLLLDYPSHQRRLLPLLAKTYAMS 399 (680)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCeecCCCCCCccchHhhhHHHHHHHHHHHHHHHHHH
Confidence 9999998833322112 2445995 4 99999999 88888887643
No 38
>KOG1469|consensus
Probab=99.38 E-value=7.5e-16 Score=114.29 Aligned_cols=202 Identities=17% Similarity=0.223 Sum_probs=144.2
Q ss_pred CccccccCCCCC--CCCCCCHHHHHHHHHHHHccCCChhHHHHHHH--hhHHHHHHhcCChhHHHHHHHHHHhCCce-ee
Q psy5139 2 TTLLGVEIPQEY--GGPGLSFMTDILIVEEIARVDPSVSILVDIQN--TLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GV 76 (216)
Q Consensus 2 ~G~~~~~~p~~~--GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~--~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~ 76 (216)
.|+|.+.+|+.- =|.|++.++...++|.++++-.. |-++..+. ..-...|.+||++||+.+|+-++.+|... ++
T Consensus 39 eGlWNLFlp~~~qkyg~GLtnveYa~icElmGrs~~A-PeVfNC~APDTGNMEvl~rYGseeQks~WL~PLLeG~irScF 117 (392)
T KOG1469|consen 39 EGLWNLFLPAVSQKYGAGLTNVEYAHICELMGRSFFA-PEVFNCQAPDTGNMEVLHRYGSEEQKSQWLIPLLEGNIRSCF 117 (392)
T ss_pred cchHHhhhHHHHHhhccCccchhHHHHHHHhcccccc-chhccCCCCCCCCeeehhhhCCHHHHhhHhHHHhcCCceeeE
Confidence 588999998542 25899999999999999987544 34443211 12233689999999999999999999986 78
Q ss_pred ecCCCC-CCCCccHHH---------------------------HHHHHHHHHhhCCC-------ce-eEeeechh--hhH
Q psy5139 77 EIPQEY-GGPGLSFMT---------------------------DILIVEEIARVDPS-------VS-ILVDIQNT--LVN 118 (216)
Q Consensus 77 ~~~e~~-gG~~~~~~~---------------------------~~~v~e~lar~~~~-------~~-~~v~~~~~--~~~ 118 (216)
+++||. ..||..+++ .+.++ +.+++.. .+ ++|+.+++ ...
T Consensus 118 aMTEP~VASSDATNIe~SI~r~~~~YvINg~KWw~sga~~PkCrv~i~--mGkt~~~~~~rhkQqSmiLVpM~TpGvkii 195 (392)
T KOG1469|consen 118 AMTEPDVASSDATNIECSIRRDGDSYVINGKKWWISGAGDPKCRIAIF--MGKTDNTSASRHKQQSMILVPMNTPGVKII 195 (392)
T ss_pred eecCCcccccccccceEEEEEcCCEEEEecceeeecCCCCCceEEEEE--ecccCCCccchhhcccEEEEecCCCCeeEe
Confidence 999997 667776544 11222 5555543 23 57777654 345
Q ss_pred HHHHhcCCHH----Hhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCccee----e
Q psy5139 119 DLIIKLGTTE----QKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKR----W 187 (216)
Q Consensus 119 ~~~~~~g~~~----~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~----~ 187 (216)
+++..+|..+ ..+..|+++ +.|.+-.++.||.+.+-.+-.+| +.-+...+|.+++..+ +
T Consensus 196 RpltVfG~~DapgGH~Ei~F~~VrVP~~NmlLGeGrGFEIaQGRLGPGR----------iHHcMRliG~aERal~lm~~R 265 (392)
T KOG1469|consen 196 RPLTVFGYTDAPGGHFEIHFENVRVPATNMLLGEGRGFEIAQGRLGPGR----------IHHCMRLIGLAERALQLMKER 265 (392)
T ss_pred eeeeeeccccCCCCcceEEEEEEEeeccceeecCCCcceeeccccCCcH----------HHHHHHHhhHHHHHHHHHHHH
Confidence 6666677653 234556654 56778888999999888888887 8888888888444222 2
Q ss_pred ee-eccccceeeeeeccc---ccccccccccCC
Q psy5139 188 MV-SCGLSLQILQFQNLS---SDMHMTGLASRF 216 (216)
Q Consensus 188 ~~-~~~fg~~i~~~Q~v~---ad~~~~~~~~r~ 216 (216)
++ +.+|||+|.+|-.+. |...+++|.+||
T Consensus 266 ~~sRiaFgk~l~q~~s~~~diA~sRveiEqaRL 298 (392)
T KOG1469|consen 266 ALSRIAFGKKLVQHGSVAHDIAESRVEIEQARL 298 (392)
T ss_pred HHHHHHhcchhhhcchHHHHHHHHHhHhhhhhh
Confidence 22 346999999999998 888899998886
No 39
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
Probab=99.36 E-value=8.9e-13 Score=88.80 Aligned_cols=71 Identities=44% Similarity=0.748 Sum_probs=63.7
Q ss_pred CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCC
Q psy5139 2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTD 72 (216)
Q Consensus 2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~ 72 (216)
.||+++.+|+++||.++++.+.+.+.|++++.+.+++..+..+..++...|.++++++|+++|+|++.+|+
T Consensus 43 ~G~~~~~~p~~~GG~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~l~~~~i~~~gs~eq~~~~lp~~~~Ge 113 (113)
T PF02771_consen 43 AGLLGLAVPEEYGGLGLSPLELAIVLEELARADASLAFALGVHQSLGAPPIAKFGSEEQKEKWLPRLASGE 113 (113)
T ss_dssp TTTTSTTSCGGGTSEB-THHHHHHHHHHHHHHTHHHHHHHHHHHHCHHHHHHHHSHHHHHHHHHHHHHTTS
T ss_pred HHHhhhhccccccCcchhhhhHHHHHHhhhhhcccccchhhhhhHHHHHHHHHHCCHHHHHHHhHHHhCCC
Confidence 59999999999999999999999999999999988877677666677788999999999999999999875
No 40
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=99.31 E-value=1.3e-14 Score=117.56 Aligned_cols=195 Identities=14% Similarity=0.091 Sum_probs=117.4
Q ss_pred CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-e-eec-
Q psy5139 2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-G-VEI- 78 (216)
Q Consensus 2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~-~~~- 78 (216)
.||+++.+|++|||.|+++.+.+.+.|++++.+++++++...+. .....+..++++++++.|++.. + +.. + ...
T Consensus 34 ~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~~~ 110 (370)
T cd01159 34 IGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVA-THSRMLAAFPPEAQEEVWGDGP-D-TLLAGSYAPG 110 (370)
T ss_pred CChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHH-HHHHHHHhCCHHHHHHHhCCCC-C-ceEEeeecCC
Confidence 59999999999999999999999999999999998876544332 4445566778888877666542 1 111 1 111
Q ss_pred ---CCCCCCCCcc----H-----HHHHHHHHHHHhhCC-----Cce-eEeeechhhhHHHHHhcCCH--HHhhhhchhc-
Q psy5139 79 ---PQEYGGPGLS----F-----MTDILIVEEIARVDP-----SVS-ILVDIQNTLVNDLIIKLGTT--EQKEKYLPRL- 137 (216)
Q Consensus 79 ---~e~~gG~~~~----~-----~~~~~v~e~lar~~~-----~~~-~~v~~~~~~~~~~~~~~g~~--~~~~~~l~~~- 137 (216)
....+|.-++ + ..+++++ +++++. +++ |+|+.+..........+|.+ ...+..|+++
T Consensus 111 t~A~~~~~gy~lnG~K~~it~~~~ad~~~v--~a~~~~~~~~~~~~~~lV~~~Gv~~~~~~~~~G~r~~~s~~v~f~~v~ 188 (370)
T cd01159 111 GRAERVDGGYRVSGTWPFASGCDHADWILV--GAIVEDDDGGPLPRAFVVPRAEYEIVDTWHVVGLRGTGSNTVVVDDVF 188 (370)
T ss_pred ceeEEeCCeEEEeccccCccCCCcCceeEe--eeECCCCCCCCcceEEEEEhHHCEEecccccccccccCCCcEEEcceE
Confidence 1111221111 1 1234444 666431 233 67776522222334556655 3456778775
Q ss_pred --ccccccccc------cchh---hhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeecc---------c---c
Q psy5139 138 --AQTDVSRTS------RGYK---ALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSCG---------L---S 194 (216)
Q Consensus 138 --~~~~lg~~~------~g~~---~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~~---------f---g 194 (216)
.+++++..+ .|++ .........+ ..+++..+|. ++++++.+ | |
T Consensus 189 Vp~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~----------~~~aa~~lG~----a~~~l~~~~~~~~~R~~~~~~g 254 (370)
T cd01159 189 VPEHRTLTAGDMMAGDGPGGSTPVYRMPLRQVFP----------LSFAAVSLGA----AEGALAEFLELAGKRVRQYGAA 254 (370)
T ss_pred cCccceecccccccCCCCCCCCccccCchHHHHH----------HHHHHHHHHH----HHHHHHHHHHHhccCcccCCCc
Confidence 456665432 1211 0011111222 5677788888 55554332 3 7
Q ss_pred ceeeeeeccc---ccccccccccC
Q psy5139 195 LQILQFQNLS---SDMHMTGLASR 215 (216)
Q Consensus 195 ~~i~~~Q~v~---ad~~~~~~~~r 215 (216)
+||++||.|| +||.+.++++|
T Consensus 255 ~~i~~~~~v~~~la~~~~~l~~a~ 278 (370)
T cd01159 255 VKMAEAPITQLRLAEAAAELDAAR 278 (370)
T ss_pred cccccCHHHHHHHHHHHHHHHHHH
Confidence 8999999999 99999999876
No 41
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=99.30 E-value=3.3e-12 Score=104.07 Aligned_cols=121 Identities=26% Similarity=0.397 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139 59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA 138 (216)
Q Consensus 59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~ 138 (216)
+++.++++++.+.|++++ +|+++||.+.+..+...+++++++.+.++++.+..+.......+..++++++++.|++++.
T Consensus 44 ~~~~~~~~~l~~~Gl~~~-vP~~~GG~g~~~~~~~~v~e~l~~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~ 122 (386)
T cd01151 44 KFDRKIIEEMGELGLLGA-TIKGYGCAGLSSVAYGLIAREVERVDSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLA 122 (386)
T ss_pred CCCHHHHHHHHHCCCCcc-CccccCCCCCCHHHHHHHHHHHHhhChhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHh
Confidence 467889999999999999 9999999999999999999999998887543333333344456778999999999999887
Q ss_pred ccc-c-----cccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139 139 QTD-V-----SRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF 180 (216)
Q Consensus 139 ~~~-l-----g~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~ 180 (216)
++. + .+++.|.+......+..+ +++|+|||+|.|++++..++
T Consensus 123 ~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~~~~Ad 171 (386)
T cd01151 123 SGELIGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWITNSPIAD 171 (386)
T ss_pred CCCeEEEEEecCCCCCCChhhCeEEEEEECCEEEEEEEEEeecCCCcCC
Confidence 664 2 455566665433334444 78999999999999887543
No 42
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=99.25 E-value=7.4e-12 Score=108.49 Aligned_cols=123 Identities=23% Similarity=0.355 Sum_probs=94.1
Q ss_pred hhHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhh-HHHHHhcCCHHHhhhhchh
Q psy5139 58 TEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLV-NDLIIKLGTTEQKEKYLPR 136 (216)
Q Consensus 58 ~~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~-~~~~~~~g~~~~~~~~l~~ 136 (216)
.+++.++|+.+.+.|++++.+||++||.+.+..+...+++++++.+.+++..+..++... ...+..+|+++|++.|++.
T Consensus 108 ~~~P~e~w~~L~e~G~~gl~IPeeyGG~Gls~~~~a~v~eeLg~~~~s~a~~~~v~~slg~~~lL~~~GteeQK~~yLp~ 187 (777)
T PRK09463 108 ADLPPEVWQFIKEHGFFGMIIPKEYGGLEFSAYAHSRVLQKLASRSGTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLPR 187 (777)
T ss_pred cCCCHHHHHHHHHCCCCcCCCchhhCCCCCCHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 467788999999999999999999999999999999999999988776543222332232 3467889999999999999
Q ss_pred ccccc------ccccccchhhhh--hhh---cccc-CC---ceeeccceeeeecCcccC
Q psy5139 137 LAQTD------VSRTSRGYKALE--WHA---FYGR-TD---SLPLNDHLSHISSGCVGF 180 (216)
Q Consensus 137 ~~~~~------lg~~~~g~~~~~--~~~---~~~~-~~---~~~l~g~k~~va~~~~g~ 180 (216)
+.++. +.+++.|++... ++. ...+ ++ +|+|||+|.|++++..++
T Consensus 188 La~Ge~i~afAlTEP~aGSDaa~i~Tta~~~~a~~dGd~~~g~vLNG~K~~IT~a~~Ad 246 (777)
T PRK09463 188 LARGEEIPCFALTSPEAGSDAGSIPDTGVVCKGEWQGEEVLGMRLTWNKRYITLAPIAT 246 (777)
T ss_pred HhCCCceeEEEecCCCcCCCcccccccceeeeeeecCCcccceEEEEEEEeeCCCCccC
Confidence 87664 357777877532 211 2222 34 599999999999998765
No 43
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=99.25 E-value=1.3e-11 Score=100.29 Aligned_cols=122 Identities=13% Similarity=0.183 Sum_probs=92.4
Q ss_pred ChhHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchh
Q psy5139 57 TTEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPR 136 (216)
Q Consensus 57 ~~~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~ 136 (216)
..+++.++|+.+.+.|++++.+||++||.+.+..+...+.|++++.+....+ +.. .......+..+|++++++.|++.
T Consensus 35 ~~~~~~~~~~~l~e~G~~~l~vPe~~GG~G~~~~~~~~v~eel~~~~~~~~~-~~~-~~~~~~~l~~~g~~~qk~~~L~~ 112 (378)
T TIGR03203 35 KGGWSKAVWGKLAEQGLLGLPFSEADGGFGAGSVETMIVMEALGKALVLEPY-LAT-VVIGGGFLRHAGSAAQKAAHLPG 112 (378)
T ss_pred cCCCCHHHHHHHHHCCCcccccchhcCCCCCCHHHHHHHHHHHhCcccchHH-HHH-HHHHHHHHHHcCCHHHHHHHHHH
Confidence 3457788999999999999999999999999999999999999986543221 111 11233456778999999999999
Q ss_pred ccccc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139 137 LAQTD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF 180 (216)
Q Consensus 137 ~~~~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~ 180 (216)
+.++. +.+++.|++.....++..+ +++|+|||+|.||+++..++
T Consensus 113 l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~g~~~~l~G~K~~vt~a~~Ad 163 (378)
T TIGR03203 113 IIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNGETAD 163 (378)
T ss_pred HhCCChhheeeecCCCCCCCcccceEEEEEcCCEEEEEeEEEEecCCccCC
Confidence 87663 2466677665433344444 77899999999999987655
No 44
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=99.25 E-value=1.5e-11 Score=100.76 Aligned_cols=118 Identities=28% Similarity=0.466 Sum_probs=91.2
Q ss_pred HHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhccccc-
Q psy5139 63 KYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTD- 141 (216)
Q Consensus 63 ~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~- 141 (216)
++++.+.+.|++++.+|+++||.+.+..+...+.+++++.+.++++....+.......+..++++++++.|++.+.++.
T Consensus 63 ~~~~~l~~~G~~~~~vP~e~GG~g~~~~~~~~v~e~la~~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~ 142 (404)
T PLN02519 63 NLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEH 142 (404)
T ss_pred HHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHhhhcccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCe
Confidence 3789999999999999999999999999999999999999988765433333333456777899999999999887653
Q ss_pred -----ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139 142 -----VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF 180 (216)
Q Consensus 142 -----lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~ 180 (216)
+.+++.|.+......+..+ +++|+|||+|.|+++...++
T Consensus 143 ~~~~a~sEp~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~a~~ad 187 (404)
T PLN02519 143 VGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCTNGPVAQ 187 (404)
T ss_pred eEEEEecCCCcCCCcccceEEEEEeCCEEEEEeEEEeecCCCcCC
Confidence 2456666554333333444 78999999999999877654
No 45
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=99.24 E-value=8.8e-12 Score=107.76 Aligned_cols=124 Identities=27% Similarity=0.334 Sum_probs=94.0
Q ss_pred ChhHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhh-HHHHHhcCCHHHhhhhch
Q psy5139 57 TTEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLV-NDLIIKLGTTEQKEKYLP 135 (216)
Q Consensus 57 ~~~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~-~~~~~~~g~~~~~~~~l~ 135 (216)
..++++++|+.+.+.|++++.+||++||.+.+..+...+++++++.+.+.++.+..++... ...+..+|+++|++.|++
T Consensus 106 ~~~~P~evw~~Lae~Gl~gl~IPeeyGGlG~s~~~~a~V~eela~~~~s~a~~~~v~~slg~~~lL~~~GTeEQK~~yLP 185 (774)
T PRK13026 106 RKDLPPEVWDYLKKEGFFALIIPKEYGGKGFSAYANSTIVSKIATRSVSAAVTVMVPNSLGPGELLTHYGTQEQKDYWLP 185 (774)
T ss_pred hcCCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHhhhH
Confidence 3467889999999999999999999999999999999999999887766543222222222 346788999999999999
Q ss_pred hccccc------ccccccchhhhh--hhh---cccc-CC---ceeeccceeeeecCcccC
Q psy5139 136 RLAQTD------VSRTSRGYKALE--WHA---FYGR-TD---SLPLNDHLSHISSGCVGF 180 (216)
Q Consensus 136 ~~~~~~------lg~~~~g~~~~~--~~~---~~~~-~~---~~~l~g~k~~va~~~~g~ 180 (216)
.+.++. +.+++.|++... ++. ...+ ++ +|+|||+|.||+++..++
T Consensus 186 ~LAsGe~i~afAlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvLNG~K~~IT~A~~Ad 245 (774)
T PRK13026 186 RLADGTEIPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLTWDKRYITLAPVAT 245 (774)
T ss_pred HHhCCCeEEEEEecCCCCCCchhcccceeeeeeeeecCCccccEEEEEEEEeecCccccC
Confidence 987764 357777877532 221 1223 44 599999999999988765
No 46
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=99.23 E-value=2.8e-11 Score=98.84 Aligned_cols=116 Identities=20% Similarity=0.336 Sum_probs=90.0
Q ss_pred HHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhccccc-
Q psy5139 63 KYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTD- 141 (216)
Q Consensus 63 ~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~- 141 (216)
++|+.+.+.|++++.+||++||.+.+..+...+.|++++.+.+..+.... ......+..+|++++++.|++.+.++.
T Consensus 44 ~~w~~l~e~G~~gl~vPe~~GG~G~~~~~~~~v~eelg~~~~~~~~~~~~--~~~~~~l~~~g~~~q~~~~L~~i~~G~~ 121 (395)
T TIGR03204 44 TWWRILNKKGWGVSHWPKQYGGTGWTSVQHYIFNEELQSAPAPQPLAFGV--SMVGPVIYTFGNEEQKKRFLPRIANVDD 121 (395)
T ss_pred HHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHHHHHhcCCCccchhHh--HhhHHHHHHhCCHHHHHHHHHHHhCCch
Confidence 79999999999999999999999999999999999999988775543221 122345677899999999999877653
Q ss_pred -----ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139 142 -----VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF 180 (216)
Q Consensus 142 -----lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~ 180 (216)
+.+++.|++......+..+ +++|+|||+|.|++++..++
T Consensus 122 ~~~~a~tEp~~gsd~~~~~t~a~~~g~~~~LnG~K~~vt~a~~Ad 166 (395)
T TIGR03204 122 WWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTWTTLAQHAD 166 (395)
T ss_pred heEeEecCCCCCCChhhceEEEEEcCCEEEEeeEEEeecCCccCC
Confidence 3466667665333333334 77899999999999887765
No 47
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=99.23 E-value=1e-11 Score=100.91 Aligned_cols=122 Identities=28% Similarity=0.488 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139 59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA 138 (216)
Q Consensus 59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~ 138 (216)
..+.++++.+.+.|++++.+|+++||.+.+..+...+.+++++.+.++++.+..+.......+..++++++++.|++++.
T Consensus 33 ~~~~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~ 112 (376)
T cd01156 33 EFPRDLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEISRASGSVALSYGAHSNLCINQIYRNGSAAQKEKYLPKLI 112 (376)
T ss_pred CCCHHHHHHHHhCCCCcccCCHhhCCCCCCHHHHHHHHHHHhccchhHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHh
Confidence 35678999999999999999999999999999999999999999888665333332333456778899999999999876
Q ss_pred ccc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139 139 QTD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF 180 (216)
Q Consensus 139 ~~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~ 180 (216)
++. +.++..|.+......+..+ +++|+|||+|.|+++...++
T Consensus 113 ~G~~~~~~a~sEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~ 161 (376)
T cd01156 113 SGEHIGALAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGPDAD 161 (376)
T ss_pred CCCeeEEEEecCCCCCCChhhCeEEEEEeCCEEEEEEEEEEecCCCcCC
Confidence 653 2355556554433344444 78999999999999987654
No 48
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=99.23 E-value=1.3e-11 Score=100.19 Aligned_cols=122 Identities=22% Similarity=0.316 Sum_probs=93.9
Q ss_pred hhHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhc
Q psy5139 58 TEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRL 137 (216)
Q Consensus 58 ~~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~ 137 (216)
...+.+.++.+.+.|++++.+||++||.+.++.+...+.+++++.+.+++++...+ ......+..+|++++++.|++++
T Consensus 31 ~~~~~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~-~~~~~~l~~~g~~~~~~~~l~~~ 109 (372)
T TIGR03207 31 RVLDRELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQIARADLSMSYVNLLA-SLNGQILAQHARPEIAKPWLGQL 109 (372)
T ss_pred CCCCHHHHHHHHHCCCCcccCChhHCCCCCCHHHHHHHHHHHHhhCccHHHHHHhh-hHHHHHHHHhCCHHHHHHHHHHH
Confidence 34677899999999999999999999999999999999999999988765432211 23334566789999999999988
Q ss_pred cccc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139 138 AQTD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF 180 (216)
Q Consensus 138 ~~~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~ 180 (216)
.++. +.+++.|.+.....++..+ +++|+|||+|.|+++...++
T Consensus 110 ~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~k~~vs~~~~ad 159 (372)
T TIGR03207 110 IAGEALFAIALTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISAADQAD 159 (372)
T ss_pred hCCCeeEEEEecCCCCCcChhhCEEEEEEeCCEEEEEEEEEEEcCCCcCC
Confidence 6653 2456666665444444445 77899999999999887654
No 49
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=99.22 E-value=1.6e-11 Score=99.84 Aligned_cols=120 Identities=21% Similarity=0.268 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139 59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA 138 (216)
Q Consensus 59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~ 138 (216)
.++.++++.+.+.|++++.+|+++||.+.+..+...+.+++++.+.++.++...+ .....+..++++++++.|++.+.
T Consensus 37 ~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~--~~~~~l~~~g~~e~~~~~l~~~~ 114 (380)
T PRK03354 37 VYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLGAPTYVLYQLP--GGFNTFLREGTQEQIDKIMAFRG 114 (380)
T ss_pred CCCHHHHHHHHHCCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCcchHHHHHhc--ccHHHHHHhCCHHHHHHHHHHHh
Confidence 4677899999999999999999999999999999999999999988754322221 12345677899999999999876
Q ss_pred ccc-c-----cccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139 139 QTD-V-----SRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF 180 (216)
Q Consensus 139 ~~~-l-----g~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~ 180 (216)
++. + .+++.|.+......+..+ +++|+|||+|.|+++...++
T Consensus 115 ~g~~~~~~a~tE~~~gs~~~~~~t~a~~~~~g~~lnG~K~fis~~~~ad 163 (380)
T PRK03354 115 TGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFITSSAYTP 163 (380)
T ss_pred CCCeeEEEEecCCCCCCchhhCEEEEEEeCCEEEEeeEEEEEcCCCcCC
Confidence 654 2 455666555333333334 78899999999999987643
No 50
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=99.20 E-value=1.6e-11 Score=99.86 Aligned_cols=121 Identities=26% Similarity=0.328 Sum_probs=91.1
Q ss_pred hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139 59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA 138 (216)
Q Consensus 59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~ 138 (216)
.++.+.++.+.+.|++++.+||++||.+.+..+...+.|++++.+.++.+.+..+ ......+..++++++++.|++.+.
T Consensus 32 ~~p~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~ 110 (378)
T cd01157 32 EYPWPLIKRAWELGLMNTHIPEDCGGLGLGTFDTCLITEELAYGCTGVQTAIEAN-SLGQMPVIISGNDEQKKKYLGRMT 110 (378)
T ss_pred CCCHHHHHHHHhCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhhhHHHHHHHhh-hhhHHHHHHhCCHHHHHHHHHHHh
Confidence 4667899999999999999999999999999999999999999887754333222 222334566799999999999876
Q ss_pred ccc-c-----cccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139 139 QTD-V-----SRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF 180 (216)
Q Consensus 139 ~~~-l-----g~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~ 180 (216)
++. + .+++.|.+......+..+ +++|+|||+|.|+++...++
T Consensus 111 ~G~~~~~~a~tEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad 159 (378)
T cd01157 111 EEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKAN 159 (378)
T ss_pred CCCeeEEEEecCCCCCCchhcCeEEEEEcCCEEEEeeEEEeecCCccCC
Confidence 653 2 355566555333334444 77899999999999887654
No 51
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=99.20 E-value=8.3e-11 Score=95.68 Aligned_cols=122 Identities=25% Similarity=0.332 Sum_probs=93.5
Q ss_pred hhHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhc
Q psy5139 58 TEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRL 137 (216)
Q Consensus 58 ~~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~ 137 (216)
.+++.++++.+.+.|++++.+|+++||.+.+..+...+.+++++.+.++.+.+... ......+..+|++++++.|++++
T Consensus 34 ~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~~~~~~~~~~~~~~-~~~~~~l~~~g~~~~~~~~l~~~ 112 (380)
T cd01152 34 REDRRRWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREEMAAAGAPVPFNQIGI-DLAGPTILAYGTDEQKRRFLPPI 112 (380)
T ss_pred chHHHHHHHHHHhCCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCCCcccchhhH-HHHHHHHHHhCCHHHHHHHhHHH
Confidence 45788999999999999999999999999999999999999999988766541111 23345677889999999999998
Q ss_pred cccc-c-----cccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139 138 AQTD-V-----SRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF 180 (216)
Q Consensus 138 ~~~~-l-----g~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~ 180 (216)
.++. + .+++.|.+........++ +++|+|||+|.|+++...++
T Consensus 113 ~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~L~G~K~~it~~~~ad 162 (380)
T cd01152 113 LSGEEIWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAHYAD 162 (380)
T ss_pred hCCchhheeecCCCCCCcchhhCeeeEEEcCCeEEEecEEEEEcCccccC
Confidence 7654 2 244555554333334444 77999999999999876654
No 52
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=99.19 E-value=2.1e-11 Score=99.00 Aligned_cols=121 Identities=25% Similarity=0.330 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139 59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA 138 (216)
Q Consensus 59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~ 138 (216)
..+.++++.+.+.|++++.+|+++||.+.+..+...+.+++++.+.++++++..+. .....+..++++++++.|++++.
T Consensus 32 ~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~l~ 110 (375)
T cd01162 32 HFPVDVLRKAAELGFGGIYIRDDVGGSGLSRLDASIIFEALSTGCVSTAAYISIHN-MCAWMIDSFGNDEQRERFLPDLC 110 (375)
T ss_pred CCCHHHHHHHHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHHHhhchhHHHHHHHhh-hHHHHHHHhCCHHHHHHHHHHHh
Confidence 35677999999999999999999999999999999999999998887654443332 33445677899999999999886
Q ss_pred ccc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139 139 QTD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF 180 (216)
Q Consensus 139 ~~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~ 180 (216)
++. +.+++.|.+......+..+ +++|+|||+|.|+++...++
T Consensus 111 ~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad 159 (375)
T cd01162 111 TMEKLASYCLTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGDSD 159 (375)
T ss_pred CCCceeEEEecCCCCCCChhhCEEEEEEeCCEEEEEEEEEEecCCCCCC
Confidence 653 2456666655443344444 77899999999999887654
No 53
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=99.19 E-value=9.8e-11 Score=95.70 Aligned_cols=121 Identities=18% Similarity=0.174 Sum_probs=87.2
Q ss_pred hhHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCC-ceeEeeechhhhHHHHHhcCCHHHhhhhchh
Q psy5139 58 TEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPS-VSILVDIQNTLVNDLIIKLGTTEQKEKYLPR 136 (216)
Q Consensus 58 ~~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~-~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~ 136 (216)
++..+++++.+.+.|++++.+|+++||.+.+..+...+.|++++.+.. ..+.+..........+..++++++++.|++.
T Consensus 40 ~~~~~~~~~~~~~~G~~~l~~P~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~ 119 (394)
T cd01155 40 PPIIEKLKAKAKAEGLWNLFLPEVSGLSGLTNLEYAYLAEETGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEP 119 (394)
T ss_pred chhHHHHHHHHHhCCCCCCCCChhhCCCCcCHHHHHHHHHHHhhhcccchheeecccccccHHHHHHhCCHHHHHHHHHH
Confidence 445568888888999999999999999999999999999999997532 2232222111233467788999999999998
Q ss_pred cccccc------cccc-cchhhhhhhhcccc-CCceeeccceeeeecCcc
Q psy5139 137 LAQTDV------SRTS-RGYKALEWHAFYGR-TDSLPLNDHLSHISSGCV 178 (216)
Q Consensus 137 ~~~~~l------g~~~-~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~ 178 (216)
+.++.+ .+++ .|.+......+..+ +++|+|||+|.|+++...
T Consensus 120 l~~G~~~~~~a~tE~~~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~~~ 169 (394)
T cd01155 120 LLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRKWWSSGAGD 169 (394)
T ss_pred HhCCCeEEEEEeCCCCCCCCchhhCEEEEEEECCEEEEEEEEEEEcCCCC
Confidence 766532 3443 34444332333444 788999999999998754
No 54
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=99.19 E-value=2.2e-11 Score=98.72 Aligned_cols=121 Identities=25% Similarity=0.415 Sum_probs=90.9
Q ss_pred hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139 59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA 138 (216)
Q Consensus 59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~ 138 (216)
..+.++++.+.+.|++++.+||++||.+.+..+...+.+++++.+.. ++.+..+.......+..++++++++.|++.+.
T Consensus 30 ~~~~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~-~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~ 108 (372)
T cd01160 30 EVPREVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELARAGGS-GPGLSLHTDIVSPYITRAGSPEQKERVLPQMV 108 (372)
T ss_pred CCCHHHHHHHHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 46678999999999999999999999999999999999999995443 33333332234456777899999999999876
Q ss_pred ccc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139 139 QTD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF 180 (216)
Q Consensus 139 ~~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~ 180 (216)
++. +.+++.|.+.........+ +++|+|||+|.|+++...++
T Consensus 109 ~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~Ad 157 (372)
T cd01160 109 AGKKIGAIAMTEPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLAD 157 (372)
T ss_pred CCCeeEEEEecCCCCCCchhhCeEEEEEeCCEEEEeeEEEEecCCCccC
Confidence 553 2456666655333334444 77999999999999887644
No 55
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=99.18 E-value=2.8e-11 Score=99.35 Aligned_cols=122 Identities=20% Similarity=0.374 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139 59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA 138 (216)
Q Consensus 59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~ 138 (216)
..++++++.+.+.|++++.+|+++||.+.+..+...+.+++++.++++.+.+..+.......+..++++++++.|++++.
T Consensus 68 ~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~ 147 (410)
T PTZ00461 68 HFNRDLFKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHHELSKYDPGFCLAYLAHSMLFVNNFYYSASPAQRARWLPKVL 147 (410)
T ss_pred CCCHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHh
Confidence 46678999999999999999999999999999999999999998876443222222233445667899999999999876
Q ss_pred ccc------ccccccchhhhhhhhcccc-C-CceeeccceeeeecCcccC
Q psy5139 139 QTD------VSRTSRGYKALEWHAFYGR-T-DSLPLNDHLSHISSGCVGF 180 (216)
Q Consensus 139 ~~~------lg~~~~g~~~~~~~~~~~~-~-~~~~l~g~k~~va~~~~g~ 180 (216)
++. +.+++.|.+.....++.++ + ++|+|||+|.|++++..++
T Consensus 148 ~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~gg~~L~G~K~~vs~a~~Ad 197 (410)
T PTZ00461 148 TGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITNGTVAD 197 (410)
T ss_pred CCCeeEEEEecCCCCCCChHHCeEEEEEcCCCeEEEEeEEEeECCCccCC
Confidence 553 2456667665444444444 3 4799999999999987644
No 56
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=99.18 E-value=2.4e-11 Score=98.71 Aligned_cols=121 Identities=17% Similarity=0.180 Sum_probs=90.5
Q ss_pred hhHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhc
Q psy5139 58 TEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRL 137 (216)
Q Consensus 58 ~~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~ 137 (216)
..++.++++.+.+.|++++.+||++||.+.+..+...+++++++.+.++++++..+.. ....+..+|++++++.|++.+
T Consensus 21 ~~~p~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~~-~~~~l~~~g~~~~~~~~l~~~ 99 (377)
T cd01163 21 RGLPYEEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHFG-FVEALLLAGPEQFRKRWFGRV 99 (377)
T ss_pred CCCCHHHHHHHHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH-HHHHHHhcCcHHHHHHHHHHH
Confidence 3467889999999999999999999999999999999999999998887654433322 235667789999999999887
Q ss_pred cccc-----ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139 138 AQTD-----VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF 180 (216)
Q Consensus 138 ~~~~-----lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~ 180 (216)
.++. +.+++.|. .........+ +++|+|||+|.|++++..++
T Consensus 100 ~~g~~~~~a~tE~~~~~-~~~~~~~~~~~~~g~~lnG~K~~is~a~~Ad 147 (377)
T cd01163 100 LNGWIFGNAVSERGSVR-PGTFLTATVRDGGGYVLNGKKFYSTGALFSD 147 (377)
T ss_pred hCCCeEEEeecCCCCCC-CCCceEEEEecCCEEEEeceEEeecCCccce
Confidence 6553 23444332 1111222333 67899999999999887654
No 57
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=99.17 E-value=5.2e-11 Score=96.91 Aligned_cols=120 Identities=19% Similarity=0.328 Sum_probs=91.3
Q ss_pred hhHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhc
Q psy5139 58 TEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRL 137 (216)
Q Consensus 58 ~~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~ 137 (216)
..++.++++.+.+.|++.+.+|+++||.+.+..+...+.+++++.+.+. +++. .......+..+|++++++.+++.+
T Consensus 36 ~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~~-~~~~--~~~~~~~l~~~g~~~q~~~~l~~~ 112 (381)
T PRK12341 36 GTYPREFMRALADNGISMLGVPEEFGGTPADYVTQMLVLEEVSKCGAPA-FLIT--NGQCIHSMRRFGSAEQLRKTAEST 112 (381)
T ss_pred CCCCHHHHHHHHHCCCCCcCCChhhCCCCcCHHHHHHHHHHHhhcChhH-HHHh--hhhhHHHHHHhCCHHHHHHHhHHH
Confidence 3467789999999999999999999999999999999999999987762 2221 123334567789999999999876
Q ss_pred -cccc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139 138 -AQTD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF 180 (216)
Q Consensus 138 -~~~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~ 180 (216)
.++. +.+++.|.+.........+ +++|+|||+|.|+++...++
T Consensus 113 ~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~gg~~lnG~K~~is~~~~Ad 163 (381)
T PRK12341 113 LETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKTFITGAKEYP 163 (381)
T ss_pred hhCCCeEEEEEecCCCCCCchhhCeeEEEEeCCEEEEEeEEEEEcCCccCC
Confidence 3543 2456667665443333334 78899999999999887644
No 58
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=99.16 E-value=2.7e-13 Score=115.74 Aligned_cols=184 Identities=16% Similarity=0.155 Sum_probs=120.0
Q ss_pred CHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCCCCCCCCccHHH------
Q psy5139 19 SFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQEYGGPGLSFMT------ 91 (216)
Q Consensus 19 ~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e~~gG~~~~~~~------ 91 (216)
++.+...+.|++++.+.+.+..+..|..+....|..+|+++|+++|++.+.+++.+ +++++|+..|+++..++
T Consensus 80 ~~~~~~~~~e~l~~~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d 159 (610)
T cd01150 80 DPEKMLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYD 159 (610)
T ss_pred CHHHHHHHHHHHhccCccccceeeehHHHHHHHHHHhCCHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEEC
Confidence 56788889999999887765445556667777899999999999999999999876 68999999999864221
Q ss_pred ---------------------------HHHHHHHHHhhC-----CCc-eeEeeech--------hh-hHHHHHhcCCHH-
Q psy5139 92 ---------------------------DILIVEEIARVD-----PSV-SILVDIQN--------TL-VNDLIIKLGTTE- 128 (216)
Q Consensus 92 ---------------------------~~~v~e~lar~~-----~~~-~~~v~~~~--------~~-~~~~~~~~g~~~- 128 (216)
+..++ +||.. .++ .|+|+... ++ +.....++|.+.
T Consensus 160 ~~t~efvLntp~~~g~K~wi~~~~~~a~~~vV--~Arl~~~g~~~Gv~~FlVp~rd~~~~~~~pGV~i~~~~~k~G~~g~ 237 (610)
T cd01150 160 PLTQEFVINTPDFTATKWWPGNLGKTATHAVV--FAQLITPGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMGLNGV 237 (610)
T ss_pred CCCCeEEECCCCCCceEECccCcccCCCEEEE--EEEeccCCCCCCeEEEEEeccccccCCCCCCeEEeecccccCCCCC
Confidence 11222 44431 123 36776421 11 222334555442
Q ss_pred -Hhhhhchhc---ccccccc----------------cccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeee
Q psy5139 129 -QKEKYLPRL---AQTDVSR----------------TSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWM 188 (216)
Q Consensus 129 -~~~~~l~~~---~~~~lg~----------------~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~ 188 (216)
.....|+++ .+++++. ++.|+..+...+..+| +.+++.++|....+...+
T Consensus 238 dng~l~Fd~vrVP~~nlL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~~~~gR----------l~ia~~a~g~~~~al~iA 307 (610)
T cd01150 238 DNGFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGR----------VGLIYDAAMSLKKAATIA 307 (610)
T ss_pred CeEEEEEeeeEecHHHhcccccccCCCCceecCCCchhhHHHHHHHHHHhhH----------HHHHHHHHHHHHHHHHHH
Confidence 334566654 3555654 4455655655556566 888888888732222212
Q ss_pred -----eeccccce-------eeeeeccc---cccccccccc
Q psy5139 189 -----VSCGLSLQ-------ILQFQNLS---SDMHMTGLAS 214 (216)
Q Consensus 189 -----~~~~fg~~-------i~~~Q~v~---ad~~~~~~~~ 214 (216)
.+.+||+| |.+||.+| ++|.+.+++.
T Consensus 308 i~Ya~~R~qfg~~~~~~e~~I~~~q~~q~rL~~~la~~~a~ 348 (610)
T cd01150 308 IRYSAVRRQFGPKPSDPEVQILDYQLQQYRLFPQLAAAYAF 348 (610)
T ss_pred HHHHHeeeecCCCCCCCcchhhccHhHHHHHHHHHHHHHHH
Confidence 24469999 99999999 7777777654
No 59
>KOG0138|consensus
Probab=99.16 E-value=7.5e-11 Score=89.31 Aligned_cols=132 Identities=25% Similarity=0.389 Sum_probs=104.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCH
Q psy5139 48 VNDLIIKLGTTEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTT 127 (216)
Q Consensus 48 ~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~ 127 (216)
...+...+..++++.+++|++.+.|.++..+. -||-.+++.+.+.++..++.|.|.+..-.+..+...+..++..+|++
T Consensus 75 ~Prvtea~r~e~F~~~i~pemGsmGvlG~tik-GYGCaG~S~vaygl~~rEveRVDs~yrs~~sVqsSL~m~~Iy~~GSE 153 (432)
T KOG0138|consen 75 MPRVTEANRNEVFDREIIPEMGSMGVLGPTIK-GYGCAGVSSVAYGLLAREVERVDSGYRSAMSVQSSLVMGPIYAYGSE 153 (432)
T ss_pred hhHHHHHhhhccCChhhhhhhhccccccCccc-CcCCCchHHHHHHHHHHHHHHhhhhchhhhhhhhhhhhhhHhhcCCH
Confidence 33445566778888899999988888775553 47778888889999999999999986655555666788899999999
Q ss_pred HHhhhhchhccccc------ccccccchhh--hhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139 128 EQKEKYLPRLAQTD------VSRTSRGYKA--LEWHAFYGR-TDSLPLNDHLSHISSGCVGF 180 (216)
Q Consensus 128 ~~~~~~l~~~~~~~------lg~~~~g~~~--~~~~~~~~~-~~~~~l~g~k~~va~~~~g~ 180 (216)
+|++.|+|.++.+. +.++++|++. +.+.+.+.. +..|.|||+|.|+++..+++
T Consensus 154 ~QkqkYlPslA~g~~igcfgLTEPn~GSdpsgmeT~At~~e~~ktyklNGsKtWI~nsp~aD 215 (432)
T KOG0138|consen 154 EQKQKYLPSLAKGKLIGCFGLTEPNHGSDPSGMETRATYDESNKTYKLNGSKTWITNSPMAD 215 (432)
T ss_pred HHHhhhhhhhhcCceeeEEeccCCCCCCCcccccceeEEccCCceEEECCeeeeecCCcccc
Confidence 99999999987653 3577888886 455555543 44599999999999999987
No 60
>PLN02526 acyl-coenzyme A oxidase
Probab=99.14 E-value=6.3e-11 Score=97.34 Aligned_cols=121 Identities=30% Similarity=0.414 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139 59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA 138 (216)
Q Consensus 59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~ 138 (216)
++++++++++.+.|++++.+ |++||.+.+..+...+++++++.+.++..++..+.......+..++++++++.|++.+.
T Consensus 60 ~~p~~~~~~l~~~G~~~~~v-~~~GG~G~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~ 138 (412)
T PLN02526 60 EFPFHIIPKLGSLGIAGGTI-KGYGCPGLSITASAIATAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLA 138 (412)
T ss_pred CCCHHHHHHHHHCCCCcCcc-cccCCCCcCHHHHHHHHHHHHhhCchHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHh
Confidence 46678999999999999888 88999999999999999999998877542222232334446778899999999999886
Q ss_pred ccc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139 139 QTD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF 180 (216)
Q Consensus 139 ~~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~ 180 (216)
++. +.+++.|.+......+..+ +++|+|||+|.|+++...++
T Consensus 139 ~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~gg~~lnG~K~~vs~~~~Ad 187 (412)
T PLN02526 139 QLDTVACWALTEPDYGSDASSLNTTATKVEGGWILNGQKRWIGNSTFAD 187 (412)
T ss_pred CCCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEEEEeeecCCCccC
Confidence 653 2355556554443444444 78999999999999887654
No 61
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=99.09 E-value=1.1e-10 Score=95.95 Aligned_cols=121 Identities=29% Similarity=0.424 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139 59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA 138 (216)
Q Consensus 59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~ 138 (216)
..+.++++.+.+.|++++.+|+++||.+.+..+...++|++++ +.++++.+..+.......+..++++++++.|++.+.
T Consensus 56 ~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~v~e~l~~-~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~ 134 (409)
T cd01161 56 KIPRKTLTQLKELGLFGLQVPEEYGGLGLNNTQYARLAEIVGM-DLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLA 134 (409)
T ss_pred CCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHhh-ChHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHh
Confidence 4667899999999999999999999999999999999999999 776554333332232334667899999999999876
Q ss_pred ccc------ccccccchhhh--hhhhcccc-CCceeeccceeeeecCcccC
Q psy5139 139 QTD------VSRTSRGYKAL--EWHAFYGR-TDSLPLNDHLSHISSGCVGF 180 (216)
Q Consensus 139 ~~~------lg~~~~g~~~~--~~~~~~~~-~~~~~l~g~k~~va~~~~g~ 180 (216)
++. +.+++.|.+.. .+...... +++|+|||+|.|+++...++
T Consensus 135 ~G~~~~~~a~tEp~~Gs~~~~~~t~a~~~~~g~g~~l~G~K~~vs~~~~Ad 185 (409)
T cd01161 135 SGEWIAAFALTEPSSGSDAASIRTTAVLSEDGKHYVLNGSKIWITNGGIAD 185 (409)
T ss_pred CCCeeEEEEecCCCCCCChhhCeeEEEEcCCCCEEEEEeEEEeecCCCcCC
Confidence 653 24565665543 23333322 45799999999999987644
No 62
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=99.09 E-value=1.3e-10 Score=94.35 Aligned_cols=122 Identities=38% Similarity=0.601 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139 59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA 138 (216)
Q Consensus 59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~ 138 (216)
..+.+.++.+.+.|++++.+|+++||.+.+..+...+.+++++.+.++.+....+.......+..++++++++.|++++.
T Consensus 30 ~~~~~~~~~l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~ 109 (373)
T cd01158 30 EFPREVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELAKVDASVAVIVSVHNSLGANPIIKFGTEEQKKKYLPPLA 109 (373)
T ss_pred CCCHHHHHHHHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHHhhCccHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHh
Confidence 35678999999999999999999999999999999999999999988765443333234456678899999999998876
Q ss_pred ccc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139 139 QTD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF 180 (216)
Q Consensus 139 ~~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~ 180 (216)
++. +.+++.|.+.........+ +++|+|||+|.|+++...++
T Consensus 110 ~G~~~~~~a~se~~~gs~~~~~~~~a~~~~~g~~l~G~k~~vsg~~~ad 158 (373)
T cd01158 110 TGEKIGAFALSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEAD 158 (373)
T ss_pred CCCeEEEEEecCCCCCCCHHHCEeEEEEeCCEEEEeeEEEEEcCCCcCC
Confidence 652 2344555544322333334 77999999999999886644
No 63
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=99.03 E-value=9.6e-10 Score=89.88 Aligned_cols=124 Identities=31% Similarity=0.450 Sum_probs=94.8
Q ss_pred ChhHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeec---hhhhHHHHHhcCCHHHhhhh
Q psy5139 57 TTEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQ---NTLVNDLIIKLGTTEQKEKY 133 (216)
Q Consensus 57 ~~~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~---~~~~~~~~~~~g~~~~~~~~ 133 (216)
.++.+.++++.+.+.|++++.+|+++||.+.+......+.+++++.+....+....+ .......+..+|++++++.|
T Consensus 37 ~~~~p~~~~~~l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~ 116 (393)
T COG1960 37 DERFPRELLRALAEAGLLGLTIPEEYGGLGLSPLEQAAVLEELARADAGGALALGLTHGGLGALAPTILRFGTEEQKRRY 116 (393)
T ss_pred cccCHHHHHHHHHhCCcccCCCChhhCCCCcchhHHHHHHHHHHhhCcchhhhHHHhccccccchHHHHHcCCHHHHHHh
Confidence 456667899999999999999999999999999999999999999988654322111 12333456678999999999
Q ss_pred chhcccc-c-----ccccccchhhhhhh-hcccc-CCceeeccceeeeecCcccC
Q psy5139 134 LPRLAQT-D-----VSRTSRGYKALEWH-AFYGR-TDSLPLNDHLSHISSGCVGF 180 (216)
Q Consensus 134 l~~~~~~-~-----lg~~~~g~~~~~~~-~~~~~-~~~~~l~g~k~~va~~~~g~ 180 (216)
++.+..+ . ++++..|++..... ....+ +++|+|||+|.|++++..++
T Consensus 117 l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~~g~~~lnG~K~~is~~~~ad 171 (393)
T COG1960 117 LPRLASGELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQKIWISNAPVAD 171 (393)
T ss_pred chhhhCCchhheeeccCCCCCcchhcCceeEEEecCCCEEEEeEEEEEcCCCCCC
Confidence 9988765 2 46777788765433 34444 55599999999999998765
No 64
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=99.02 E-value=4.2e-10 Score=96.27 Aligned_cols=116 Identities=22% Similarity=0.319 Sum_probs=83.4
Q ss_pred HHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhccccc
Q psy5139 62 EKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTD 141 (216)
Q Consensus 62 ~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~ 141 (216)
++.++.+.+.|++++.+||++||.+++......+.|.+++.+.++...... .......+..+|+++|++.|++++.++.
T Consensus 102 ~e~~~~l~e~G~~~l~~Pee~GG~Gl~~~~~~~~~E~~~~a~~~~~~~~~l-~~ga~~~L~~~Gs~eqk~~~Lp~l~sGe 180 (622)
T PTZ00456 102 KEAYQALKAGGWTGISEPEEYGGQALPLSVGFITRELMATANWGFSMYPGL-SIGAANTLMAWGSEEQKEQYLTKLVSGE 180 (622)
T ss_pred HHHHHHHHHcCCCCCCCCcccCCCCcCHHHHHHHHHHHHHhchHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHhcCC
Confidence 468999999999999999999999998775555555566666543221111 1123456788999999999999987764
Q ss_pred ------ccccccchhhhhhhhcccc-CC-ceeeccceeeeecCcc
Q psy5139 142 ------VSRTSRGYKALEWHAFYGR-TD-SLPLNDHLSHISSGCV 178 (216)
Q Consensus 142 ------lg~~~~g~~~~~~~~~~~~-~~-~~~l~g~k~~va~~~~ 178 (216)
+.+++.|++.....++..+ ++ +|+|||+|.||+++..
T Consensus 181 ~~~t~alTEp~aGSD~~~l~T~A~~~gdG~y~L~G~K~fIt~g~~ 225 (622)
T PTZ00456 181 WSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKITGTKIFISAGDH 225 (622)
T ss_pred hhhhhhccCCccCCCcccCeeEEEECCCCcEEEeeEEEEecCCch
Confidence 3567777775333333333 44 5999999999998765
No 65
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=99.02 E-value=7.9e-10 Score=92.25 Aligned_cols=108 Identities=22% Similarity=0.254 Sum_probs=77.7
Q ss_pred CceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcccccc-----cccc
Q psy5139 72 DLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDV-----SRTS 146 (216)
Q Consensus 72 ~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l-----g~~~ 146 (216)
|++++.+||++||.+++..+...+.|++++.+.+..+.+..+......++..+|++++++.|++.+.++.+ -+++
T Consensus 64 Gl~gl~vPeeyGG~Gl~~~~~a~v~Eelgr~~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~Lp~lasGe~i~A~AltE~ 143 (520)
T PTZ00457 64 NLYGARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDGTIMMGWATEEG 143 (520)
T ss_pred CccCCCCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 88899999999999999999999999999977654322212323444567778999999999999877642 1346
Q ss_pred cchhhhhhhhcccc--CCceeeccceeeeecCcccC
Q psy5139 147 RGYKALEWHAFYGR--TDSLPLNDHLSHISSGCVGF 180 (216)
Q Consensus 147 ~g~~~~~~~~~~~~--~~~~~l~g~k~~va~~~~g~ 180 (216)
.|++.....++..+ +++|+|||+|.++ ++..++
T Consensus 144 aGSD~a~i~TtA~~~~gg~wvLNG~K~~t-~g~~Ad 178 (520)
T PTZ00457 144 CGSDISMNTTKASLTDDGSYVLTGQKRCE-FAASAT 178 (520)
T ss_pred CCCccccceeEEEEcCCCeEEEEEEEEEE-cCchhc
Confidence 67665433333333 4579999999966 555544
No 66
>KOG0137|consensus
Probab=99.00 E-value=8.2e-10 Score=90.47 Aligned_cols=122 Identities=26% Similarity=0.358 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139 59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA 138 (216)
Q Consensus 59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~ 138 (216)
..++..+..+.+.|++++.+|++++|.+..+.+...+.|...-.|.+..+.+..|..+....+..+|+++|++.|+++++
T Consensus 109 ~~~~~t~e~l~elG~fgl~v~~e~~G~G~~ntq~arl~e~~~~~D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kYL~~La 188 (634)
T KOG0137|consen 109 KIEETTLEALRELGLFGLQVPSEFDGLGFCNTQYARLFEIVSVADLNVGVTLGAHQSIGLKGLLLYGTDEQKQKYLPKLA 188 (634)
T ss_pred ccchhHHHHHHHhCceeeccCcccCccccchHHHHHHhhccccccccceeeeccchhhheeeeeecCCHHHHHHHHHhhh
Confidence 34567788899999999999999999999999999888877665776655555555566777888999999999999987
Q ss_pred ccc------ccccccchhh--hhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139 139 QTD------VSRTSRGYKA--LEWHAFYGR-TDSLPLNDHLSHISSGCVGF 180 (216)
Q Consensus 139 ~~~------lg~~~~g~~~--~~~~~~~~~-~~~~~l~g~k~~va~~~~g~ 180 (216)
++. +.++..|++. ...+....+ +++|+|||.|+|++++..+.
T Consensus 189 Sg~~~~A~altE~s~Gsdaas~~~~a~~s~dg~~y~LNG~Kiwisn~g~Ad 239 (634)
T KOG0137|consen 189 SGKLIAAFALTEPSSGSDAASGRTTATLSPDGKHYVLNGSKIWISNGGLAD 239 (634)
T ss_pred cCCccceEEEecCCCCcccccceeeeeecCCCCeEEEcCeeEEEecCccce
Confidence 764 4567777665 344444444 67899999999999998765
No 67
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=99.00 E-value=6.1e-10 Score=91.41 Aligned_cols=116 Identities=25% Similarity=0.352 Sum_probs=87.7
Q ss_pred HHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhccccc
Q psy5139 62 EKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTD 141 (216)
Q Consensus 62 ~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~ 141 (216)
.++++.+.+.|++++.+|+++||.+.+..+...+.+++++.+.++.++...+ .....+..++++++++.|++++.++.
T Consensus 39 ~e~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~s~~~~~~~~--~~~~~l~~~g~~~~~~~~l~~i~~G~ 116 (407)
T cd01153 39 KEALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIFSRGDAPLMYASGTQ--GAAATLLAHGTEAQREKWIPRLAEGE 116 (407)
T ss_pred HHHHHHHHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHh--HHHHHHHHhCCHHHHHHHHHHHhCCC
Confidence 6779999999999999999999999999999999999999887754332222 22345677899999999999887663
Q ss_pred ------ccccccchhhhhhhhcccc--CCceeeccceeeeecCccc
Q psy5139 142 ------VSRTSRGYKALEWHAFYGR--TDSLPLNDHLSHISSGCVG 179 (216)
Q Consensus 142 ------lg~~~~g~~~~~~~~~~~~--~~~~~l~g~k~~va~~~~g 179 (216)
+.+++.|.+......+..+ +++|+|||+|.|++++..+
T Consensus 117 ~~~~~a~tEp~~gsd~~~~~t~a~~~~~ggy~l~G~K~~is~~~~a 162 (407)
T cd01153 117 WTGTMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFISAGEHD 162 (407)
T ss_pred eeEEEEecCCCCCCCcccceEEEEECCCCcEEEeeEEEEEeCCCcc
Confidence 2466666654333333333 4579999999999987654
No 68
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=98.94 E-value=3.1e-12 Score=109.53 Aligned_cols=158 Identities=18% Similarity=0.208 Sum_probs=103.1
Q ss_pred HHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCCCCCCCCccHHH-----------------------------
Q psy5139 42 DIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQEYGGPGLSFMT----------------------------- 91 (216)
Q Consensus 42 ~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e~~gG~~~~~~~----------------------------- 91 (216)
..|..+....|..+|+++|+++|+|.+.+++.+ +++++|+.+|+|+..++
T Consensus 96 ~vh~~~~~~~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~defvLntPt~~g~K~wi~~~ 175 (646)
T PTZ00460 96 TVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEAVKFWPGEL 175 (646)
T ss_pred EeeHhhHHHHHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEEEcCCCCEEEECCCCCCeEEEccCCC
Confidence 345556667788999999999999999999976 68999999999864221
Q ss_pred ----HHHHHHHHHhhC-----CCce-eEeeec--------hhh-hHHHHHhcCCH--HHhhhhchhc---ccccccc---
Q psy5139 92 ----DILIVEEIARVD-----PSVS-ILVDIQ--------NTL-VNDLIIKLGTT--EQKEKYLPRL---AQTDVSR--- 144 (216)
Q Consensus 92 ----~~~v~e~lar~~-----~~~~-~~v~~~--------~~~-~~~~~~~~g~~--~~~~~~l~~~---~~~~lg~--- 144 (216)
+..++ +||+. .++. |+|+.. .++ +.....++|.+ +.....|+++ .+++|+.
T Consensus 176 g~~A~~~vV--~Arl~~~~~~~Gi~~FlV~ird~~~~~~~pGV~vg~~~~k~G~~~~dng~l~Fd~VrVP~~nlLg~~~~ 253 (646)
T PTZ00460 176 GFLCNFALV--YAKLIVNGKNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMGYAVKDNGFLSFDHYRIPLDSLLARYIK 253 (646)
T ss_pred CCCCCEEEE--EEEECcCCCCCceEEEEEeccccCCCCCCCCeEEeccccccCcCCCCceEEEeceEEECHHHhCCcccc
Confidence 12223 45542 1233 777621 112 22344666654 3345677765 4667764
Q ss_pred ---ccc----c-hhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeee---------eccccc------eeeeee
Q psy5139 145 ---TSR----G-YKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMV---------SCGLSL------QILQFQ 201 (216)
Q Consensus 145 ---~~~----g-~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~---------~~~fg~------~i~~~Q 201 (216)
++. | ++.....+...| ..+++.++|. ++.++ +.+||+ ||++||
T Consensus 254 v~~~G~~~~~g~~~~~~~~l~~~R----------~~iaa~~~g~----a~~Al~iAvrYa~~R~QFg~~~~~E~pI~~yQ 319 (646)
T PTZ00460 254 VSEDGQVERQGNPKVSYASMMYMR----------NLIIDQYPRF----AAQALTVAIRYSIYRQQFTNDNKQENSVLEYQ 319 (646)
T ss_pred cCCCCccccCCcHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHccccCCCCCCCCCcHhhhH
Confidence 231 3 444444444455 7777777776 33333 446998 999999
Q ss_pred ccc---ccccccccccC
Q psy5139 202 NLS---SDMHMTGLASR 215 (216)
Q Consensus 202 ~v~---ad~~~~~~~~r 215 (216)
.+| ++|.+.++++|
T Consensus 320 ~~Q~rLa~~la~~~A~r 336 (646)
T PTZ00460 320 TQQQKLLPLLAEFYACI 336 (646)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 999 99999988876
No 69
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=98.86 E-value=2.2e-09 Score=87.02 Aligned_cols=116 Identities=14% Similarity=0.111 Sum_probs=83.1
Q ss_pred ChhHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchh
Q psy5139 57 TTEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPR 136 (216)
Q Consensus 57 ~~~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~ 136 (216)
..+++.++++.+.+.|++++.+|+++||.+.+..+...+.+++++.+.++++++.... .....+..++++.+++.|++.
T Consensus 20 ~~~~p~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 98 (370)
T cd01159 20 ARRLPDEVVRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVA-THSRMLAAFPPEAQEEVWGDG 98 (370)
T ss_pred cCCCCHHHHHHHHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHH-HHHHHHHhCCHHHHHHHhCCC
Confidence 3457888999999999999999999999999999999999999999888665433221 223345566777888777764
Q ss_pred cccccccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139 137 LAQTDVSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF 180 (216)
Q Consensus 137 ~~~~~lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~ 180 (216)
.. +.+. |.... .....+ +++|+|||+|.|++++..++
T Consensus 99 ~~-~~~~----g~~~~--~t~A~~~~~gy~lnG~K~~it~~~~ad 136 (370)
T cd01159 99 PD-TLLA----GSYAP--GGRAERVDGGYRVSGTWPFASGCDHAD 136 (370)
T ss_pred CC-ceEE----eeecC--CceeEEeCCeEEEeccccCccCCCcCc
Confidence 32 1111 11111 123333 77899999999999887654
No 70
>PLN02876 acyl-CoA dehydrogenase
Probab=98.83 E-value=6.5e-09 Score=92.30 Aligned_cols=116 Identities=22% Similarity=0.214 Sum_probs=82.9
Q ss_pred HHHHHHHH-hCCceeeecCCC------------------------CCCCCccHHHHHHHHHHHHhhCCCc-eeEeeechh
Q psy5139 62 EKYLPRLA-QTDLMGVEIPQE------------------------YGGPGLSFMTDILIVEEIARVDPSV-SILVDIQNT 115 (216)
Q Consensus 62 ~~~l~~l~-~g~~~~~~~~e~------------------------~gG~~~~~~~~~~v~e~lar~~~~~-~~~v~~~~~ 115 (216)
.+.|+++. +.|++++.+||+ +||.+.+..+...+.|++++.+.+. .+.+..+..
T Consensus 444 ~~~~~~~~~~~G~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~G~~~~~~~~~~Eelg~~~~~~~~~~~~~~~~ 523 (822)
T PLN02876 444 EERLKELAKKEGLWNLWIPLDSAARARKLLFEDNKHMVSGDSADQLLGAGLSNLEYGYLCEIMGRSVWAPQVFNCGAPDT 523 (822)
T ss_pred hHHHHHHHHHcCcccCCCCchhhhhhhhcccccccccccccccccCCCCCCCHHHHHHHHHHHhccchHHHHhcccCccc
Confidence 35677765 899999999995 8999999999999999999975432 121211111
Q ss_pred hhHHHHHhcCCHHHhhhhchhccccc------ccccc-cchhhhhhhhcccc-CCceeeccceeeeecCc
Q psy5139 116 LVNDLIIKLGTTEQKEKYLPRLAQTD------VSRTS-RGYKALEWHAFYGR-TDSLPLNDHLSHISSGC 177 (216)
Q Consensus 116 ~~~~~~~~~g~~~~~~~~l~~~~~~~------lg~~~-~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~ 177 (216)
.....+..+|+++|++.|++.+.++. +.+++ .|++.....++..+ +++|+|||+|.+++++.
T Consensus 524 ~~~~~l~~~gt~eqk~~~L~~l~~G~~~~~~a~tEp~~~gsd~~~~~t~a~~~g~g~vLnG~K~~vtga~ 593 (822)
T PLN02876 524 GNMEVLLRYGNKEQQLEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIRRQGDSYVINGTKWWTSGAM 593 (822)
T ss_pred ccHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCccCcccccceEEEEEcCCEEEEEeEEEEecCCC
Confidence 23356778899999999999987663 23443 44554333334444 77899999999999874
No 71
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
Probab=98.64 E-value=6.4e-09 Score=69.85 Aligned_cols=82 Identities=38% Similarity=0.644 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139 59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA 138 (216)
Q Consensus 59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~ 138 (216)
..++++++.+.+.|++++.+|+++||.+.+..+...+.+++++.+.++.+....+.......+.++|++++++.|++++.
T Consensus 31 ~~p~~~~~~l~~~G~~~~~~p~~~GG~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~l~~~~i~~~gs~eq~~~~lp~~~ 110 (113)
T PF02771_consen 31 RFPREVWRALGEAGLLGLAVPEEYGGLGLSPLELAIVLEELARADASLAFALGVHQSLGAPPIAKFGSEEQKEKWLPRLA 110 (113)
T ss_dssp SCHHHHHHHHHHTTTTSTTSCGGGTSEB-THHHHHHHHHHHHHHTHHHHHHHHHHHHCHHHHHHHHSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhhccccccCcchhhhhHHHHHHhhhhhcccccchhhhhhHHHHHHHHHHCCHHHHHHHhHHHh
Confidence 57788999999999999999999999999999999999999999887655444443455578899999999999999876
Q ss_pred cc
Q psy5139 139 QT 140 (216)
Q Consensus 139 ~~ 140 (216)
+|
T Consensus 111 ~G 112 (113)
T PF02771_consen 111 SG 112 (113)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 72
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=98.57 E-value=3.8e-10 Score=89.93 Aligned_cols=153 Identities=25% Similarity=0.369 Sum_probs=99.5
Q ss_pred hHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCCCCCCCCccHH-------------------------HHHHHHHHHH
Q psy5139 47 LVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQEYGGPGLSFM-------------------------TDILIVEEIA 100 (216)
Q Consensus 47 ~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e~~gG~~~~~~-------------------------~~~~v~e~la 100 (216)
++...|..+++++|++++++.+.+++.+ +++++|+..|++.... .+.+++ .+
T Consensus 43 ~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv--~a 120 (327)
T cd00567 43 LGAALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADLFIV--LA 120 (327)
T ss_pred hchHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEeCCEEEEEEEEEEecCCccCCEEEE--EE
Confidence 3556788899999999999999998865 7889998877654211 122232 34
Q ss_pred hhCC------Cc-eeEeeechh-h-hHHHHHhcCCH--HHhhhhchhc---ccccccccccchhhhhhhhccccCCceee
Q psy5139 101 RVDP------SV-SILVDIQNT-L-VNDLIIKLGTT--EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPL 166 (216)
Q Consensus 101 r~~~------~~-~~~v~~~~~-~-~~~~~~~~g~~--~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l 166 (216)
+.+. .. .|+++.+.. + .......+|.+ ......|+++ .+..++.++.|+......+...+
T Consensus 121 ~~~~~~~~~~~~~~~lvp~~~~Gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~------ 194 (327)
T cd00567 121 RTDEEGPGHRGISAFLVPADTPGVTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGGFELAMKGLNVGR------ 194 (327)
T ss_pred EeCCCCCCCCceEEEEEeCCCCCeEeccccccccCCCCceEEEEECCEEecHHHcCCCCCchHHHHHHHHHHHH------
Confidence 4321 22 256665432 1 11222223333 2344566664 34567777777765555556665
Q ss_pred ccceeeeecCcccCCCcceeeeeec---------cccceeeeeeccc---ccccccccccC
Q psy5139 167 NDHLSHISSGCVGFDGQLKRWMVSC---------GLSLQILQFQNLS---SDMHMTGLASR 215 (216)
Q Consensus 167 ~g~k~~va~~~~g~~~~~~~~~~~~---------~fg~~i~~~Q~v~---ad~~~~~~~~r 215 (216)
..+++..+|. ++.+++. +||+||.+||.|| ++|.+.++++|
T Consensus 195 ----~~~aa~~~G~----a~~al~~~~~~~~~r~~~g~~~~~~~~vq~~la~~~~~~~~~~ 247 (327)
T cd00567 195 ----LLLAAVALGA----ARAALDEAVEYAKQRKQFGKPLAEFQAVQFKLADMAAELEAAR 247 (327)
T ss_pred ----HHHHHHHHHH----HHHHHHHHHHHHHhccccCCccccchHHHHHHHHHHHHHHHHH
Confidence 7778888888 6655533 4999999999999 99999888776
No 73
>PLN02636 acyl-coenzyme A oxidase
Probab=98.54 E-value=2.1e-07 Score=80.74 Aligned_cols=114 Identities=22% Similarity=0.298 Sum_probs=83.2
Q ss_pred hHH-HHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhc
Q psy5139 59 EQK-EKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRL 137 (216)
Q Consensus 59 ~~~-~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~ 137 (216)
+++ +++++.+.+.+++++.+|++ +......+.|++++.+.+.++.+..+..+....+..+|+++|++.|++.+
T Consensus 95 e~~~~~l~~~~~~~g~~~~~~~~~------~~~~~~~~~e~l~~~d~s~~~~~~vh~~l~~~~I~~~GTeeQk~~~L~~~ 168 (686)
T PLN02636 95 ELCMRQLTGLVREAGIRPMKYLVE------DPAKYFAITEAVGSVDMSLGIKLGVQYSLWGGSVINLGTKKHRDKYFDGI 168 (686)
T ss_pred hhHHHHHHHHHHhcCccccccccC------CHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHH
Confidence 444 55666777888888877865 55667778888998877654434444445567788899999999999998
Q ss_pred cccc------ccccccchhh--hhhhhcccc-CCceeec-----cceeeeecCcc
Q psy5139 138 AQTD------VSRTSRGYKA--LEWHAFYGR-TDSLPLN-----DHLSHISSGCV 178 (216)
Q Consensus 138 ~~~~------lg~~~~g~~~--~~~~~~~~~-~~~~~l~-----g~k~~va~~~~ 178 (216)
.++. +.++++|++. +.+++.+.+ ++.|+|| |+|+|++++..
T Consensus 169 ~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~~defVLntP~~~g~K~wI~na~~ 223 (686)
T PLN02636 169 DNLDYPGCFAMTELHHGSNVQGLQTTATFDPLTDEFVINTPNDGAIKWWIGNAAV 223 (686)
T ss_pred hCCChhhhhhccCCCcccCcccCeeEEEEcCCCCeEEECCCCCCeEEEeecCCcc
Confidence 6653 3577888876 455555544 6789999 99999998864
No 74
>KOG1469|consensus
Probab=98.54 E-value=9.9e-08 Score=71.62 Aligned_cols=127 Identities=19% Similarity=0.139 Sum_probs=87.3
Q ss_pred hcCChhHHHHHHHHHHhCCceeeecCCCC--CCCCccHHHHHHHHHHHHhhCCC-ceeEeeechhhhHHHHHhcCCHHHh
Q psy5139 54 KLGTTEQKEKYLPRLAQTDLMGVEIPQEY--GGPGLSFMTDILIVEEIARVDPS-VSILVDIQNTLVNDLIIKLGTTEQK 130 (216)
Q Consensus 54 ~~g~~~~~~~~l~~l~~g~~~~~~~~e~~--gG~~~~~~~~~~v~e~lar~~~~-~~~~v~~~~~~~~~~~~~~g~~~~~ 130 (216)
++..+.+.+++-+.....|++++.+|+.. -|.+++.+++..++|.+.|.-.. -.|-+...+.-....+.++|+++|+
T Consensus 22 rWt~~p~iekLKE~aK~eGlWNLFlp~~~qkyg~GLtnveYa~icElmGrs~~APeVfNC~APDTGNMEvl~rYGseeQk 101 (392)
T KOG1469|consen 22 RWTKPPVIEKLKEMAKVEGLWNLFLPAVSQKYGAGLTNVEYAHICELMGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQK 101 (392)
T ss_pred cCCCCchHHHHHHHHHhcchHHhhhHHHHHhhccCccchhHHHHHHHhccccccchhccCCCCCCCCeeehhhhCCHHHH
Confidence 45555555555555556677788777653 57788999999999998876332 2344433333455677899999999
Q ss_pred hhhchhcccccc------cccc-cchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139 131 EKYLPRLAQTDV------SRTS-RGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF 180 (216)
Q Consensus 131 ~~~l~~~~~~~l------g~~~-~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~ 180 (216)
..|+.++.++.+ .++. ..++..+-.....| ++.|+|||+|+|++++.--.
T Consensus 102 s~WL~PLLeG~irScFaMTEP~VASSDATNIe~SI~r~~~~YvINg~KWw~sga~~Pk 159 (392)
T KOG1469|consen 102 SQWLIPLLEGNIRSCFAMTEPDVASSDATNIECSIRRDGDSYVINGKKWWISGAGDPK 159 (392)
T ss_pred hhHhHHHhcCCceeeEeecCCcccccccccceEEEEEcCCEEEEecceeeecCCCCCc
Confidence 999998876654 2332 23344444445556 77899999999999987655
No 75
>PLN02312 acyl-CoA oxidase
Probab=98.38 E-value=9.5e-07 Score=76.62 Aligned_cols=115 Identities=19% Similarity=0.229 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139 59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA 138 (216)
Q Consensus 59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~ 138 (216)
+...+.+.++.+.++....+||.+ .+ +......+.|++++.+.++.+.+..+..+....+..+|+++|++.|++.+.
T Consensus 105 ~~~~~~~~~l~~~g~~~~~~pe~g--~~-~~~~~~~~~Eel~~~d~s~~~~~~vh~~l~~~~I~~~GTeeqk~~~L~~~~ 181 (680)
T PLN02312 105 EITMKRILYLLERGVFRGWLTETG--PE-AELRKLALLEVIGIYDHSLAIKLGVHFFLWGGAIKFLGTKRHHDKWLKDTE 181 (680)
T ss_pred HhHHHHHHHHHHhhhcCCCCCCCC--Cc-cHHHHHHHHHHHHHhcchHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHh
Confidence 344566777888888888888853 22 466677888899988776543333443455667888999999999999887
Q ss_pred ccc------ccccccchhh--hhhhhcccc-CCceeec-----cceeeeecC
Q psy5139 139 QTD------VSRTSRGYKA--LEWHAFYGR-TDSLPLN-----DHLSHISSG 176 (216)
Q Consensus 139 ~~~------lg~~~~g~~~--~~~~~~~~~-~~~~~l~-----g~k~~va~~ 176 (216)
++. +.++++|++. +.+++.+.. ++.|+|| |+|+|++++
T Consensus 182 ~ge~ig~fA~TEpghGSdv~~leTtAt~D~~~defVLNtPt~~g~K~wig~a 233 (680)
T PLN02312 182 DYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGA 233 (680)
T ss_pred CCCeeeEeeecCCCcCcchhcCeEEEEEeCCCCEEEECCCCCCeEEECccCC
Confidence 653 3577888775 455555543 5689999 799999987
No 76
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=98.37 E-value=1.9e-06 Score=71.10 Aligned_cols=112 Identities=16% Similarity=0.132 Sum_probs=73.8
Q ss_pred HHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeee-chhhhHHHHHhcCCHHHhhhhchhcccc
Q psy5139 62 EKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDI-QNTLVNDLIIKLGTTEQKEKYLPRLAQT 140 (216)
Q Consensus 62 ~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~-~~~~~~~~~~~~g~~~~~~~~l~~~~~~ 140 (216)
+++++.+.+.|+.++ +++++++.+ ......+.+.++..+... .++. ........+..+|+++++ .|++.+.++
T Consensus 68 ~~~~~~~~~~G~~~~-~~~~~~~~g--~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~l~~~g~~~~~-~~l~~l~~g 141 (418)
T cd01154 68 HALMRRLIEEGVINI-EDGPAGEGR--RHVHFAAGYLLSDAAAGL--LCPLTMTDAAVYALRKYGPEELK-QYLPGLLSD 141 (418)
T ss_pred HHHHHHHHHcCCccC-CchhhCCCc--HHHHHHHHHHHHhcchhc--cCcHHHHHHHHHHHHHhCcHHHH-HHHHHHhCC
Confidence 678889999999988 777766544 233334444465554332 2221 123456778888988764 588887655
Q ss_pred -----c-----ccccccchhhhhhhhcccc--CCceeeccceeeeecCcccC
Q psy5139 141 -----D-----VSRTSRGYKALEWHAFYGR--TDSLPLNDHLSHISSGCVGF 180 (216)
Q Consensus 141 -----~-----lg~~~~g~~~~~~~~~~~~--~~~~~l~g~k~~va~~~~g~ 180 (216)
. +.+++.|++.....++..+ +++|+|||+|.|+++. .++
T Consensus 142 ~~~~~~~~~~~~TEp~~GSD~~~~~T~A~~~~g~~~~LnG~K~f~s~a-~Ad 192 (418)
T cd01154 142 RYKTGLLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAP-LAD 192 (418)
T ss_pred CcccchhheeeecCCCcccchhhCeEEEEECCCCcEEEEEEEEEecCc-ccC
Confidence 2 3577788877554444444 4689999999999988 654
No 77
>PLN02443 acyl-coenzyme A oxidase
Probab=98.34 E-value=2.1e-09 Score=92.50 Aligned_cols=46 Identities=20% Similarity=0.246 Sum_probs=39.2
Q ss_pred HHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCCCCCCCCcc
Q psy5139 43 IQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQEYGGPGLS 88 (216)
Q Consensus 43 ~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e~~gG~~~~ 88 (216)
.|..+....|..+|+++|+++|+|.+.+++.+ +++++|+.+|+++.
T Consensus 101 ~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~ 147 (664)
T PLN02443 101 LHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQ 147 (664)
T ss_pred ehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccchh
Confidence 34446667788999999999999999999976 68999999999864
No 78
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=97.47 E-value=0.00012 Score=41.65 Aligned_cols=39 Identities=15% Similarity=0.078 Sum_probs=28.0
Q ss_pred ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139 142 VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF 180 (216)
Q Consensus 142 lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~ 180 (216)
+.|++.|.+.........+ +++|+|||+|.+++++..+.
T Consensus 4 ~tE~~~g~d~~~~~t~a~~~~~~~~L~G~K~~v~~~~~a~ 43 (52)
T PF02770_consen 4 LTEPGAGSDLAAVETTARRDGDGYVLNGEKRFVSNAPDAD 43 (52)
T ss_dssp --BTTBSSSGGG-SSEEEEETTEEEEEEEEEEEETTTTES
T ss_pred EcCCCCCCCcccCEEEeecccceEEEeeEEEEECCcCccC
Confidence 3466677776555556655 88899999999999987655
No 79
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=97.43 E-value=0.00051 Score=58.34 Aligned_cols=112 Identities=15% Similarity=0.124 Sum_probs=62.8
Q ss_pred HHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHH-HhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhccccc
Q psy5139 63 KYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEI-ARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTD 141 (216)
Q Consensus 63 ~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~l-ar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~ 141 (216)
++...+.+.++.+..++++.+ ... .+.. .+.+-+ +..+.. ..++........++...+++++++.|++.+.++.
T Consensus 90 ~~~~~~~~~g~~~~~~~~~~~-~~~-~~~~-~~~~~l~~~~~~g--~~cp~~mT~~a~~~l~~~~~e~~~~~lp~l~sg~ 164 (538)
T PRK11561 90 LLMQGLCANRVHNLAWEEDAR-SGA-FVAR-AARFMLHAQVEAG--TLCPITMTFAATPLLLQMLPAPFQDWLTPLLSDR 164 (538)
T ss_pred HHHHHHHHcCCccCCCCCccC-chH-HHHH-HHHHHHHhhhhHH--hhchHHHHHHHHHHHHhcCHHHHHHHHHHHhCCC
Confidence 455666777887777765443 111 1111 111112 222221 2333322233345556688889999999876542
Q ss_pred -------------------ccccccchhhhhhhhcccc--CCceeeccceeeeecCcccC
Q psy5139 142 -------------------VSRTSRGYKALEWHAFYGR--TDSLPLNDHLSHISSGCVGF 180 (216)
Q Consensus 142 -------------------lg~~~~g~~~~~~~~~~~~--~~~~~l~g~k~~va~~~~g~ 180 (216)
+.+++.|++.....+...+ +++|+|||+|+|+++ ..++
T Consensus 165 ~~~~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~gg~w~LnG~K~fiSa-~~AD 223 (538)
T PRK11561 165 YDSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHKWFFSV-PQSD 223 (538)
T ss_pred cccccccchhhhhheeEEEecCCCCCCchhhCeeEEEECCCCeEEEEEEEEEEEc-hhhC
Confidence 3466778876555445544 467999999999994 4433
No 80
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=97.39 E-value=0.00047 Score=59.66 Aligned_cols=89 Identities=18% Similarity=0.209 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhccccc-c-----cccccchhh--hhhhhcccc
Q psy5139 89 FMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTD-V-----SRTSRGYKA--LEWHAFYGR 160 (216)
Q Consensus 89 ~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~-l-----g~~~~g~~~--~~~~~~~~~ 160 (216)
..+...+.|++++.|.+..+.+..+..+....+..+|++++++.|++.+.++. + .++++|++. +.+++.+..
T Consensus 81 ~~~~~~~~e~l~~~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d~ 160 (610)
T cd01150 81 PEKMLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYDP 160 (610)
T ss_pred HHHHHHHHHHHhccCccccceeeehHHHHHHHHHHhCCHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEECC
Confidence 34555667788887776544344444456677888999999999999886653 3 467788775 445554433
Q ss_pred -CCceeec-----cceeeeecCc
Q psy5139 161 -TDSLPLN-----DHLSHISSGC 177 (216)
Q Consensus 161 -~~~~~l~-----g~k~~va~~~ 177 (216)
.++|+|| |+|+|+++..
T Consensus 161 ~t~efvLntp~~~g~K~wi~~~~ 183 (610)
T cd01150 161 LTQEFVINTPDFTATKWWPGNLG 183 (610)
T ss_pred CCCeEEECCCCCCceEECccCcc
Confidence 3789999 9999999764
No 81
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=96.56 E-value=0.0035 Score=54.62 Aligned_cols=61 Identities=23% Similarity=0.291 Sum_probs=46.4
Q ss_pred hhhHHHHHhcCCHHHhhhhchhccccc------ccccccchhh--hhhhhcccc-CCceeec-----cceeeeec
Q psy5139 115 TLVNDLIIKLGTTEQKEKYLPRLAQTD------VSRTSRGYKA--LEWHAFYGR-TDSLPLN-----DHLSHISS 175 (216)
Q Consensus 115 ~~~~~~~~~~g~~~~~~~~l~~~~~~~------lg~~~~g~~~--~~~~~~~~~-~~~~~l~-----g~k~~va~ 175 (216)
.+....+..+|+++|++.|++.+.++. +.++++|++. +.+++.+.+ +++|+|| |+|.|+++
T Consensus 100 ~~~~~~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~defvLntPt~~g~K~wi~~ 174 (646)
T PTZ00460 100 AMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEAVKFWPGE 174 (646)
T ss_pred hhHHHHHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEEEcCCCCEEEECCCCCCeEEEccCC
Confidence 344566788899999999999987653 3477888775 455555543 6789998 99999996
No 82
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=96.47 E-value=0.003 Score=50.32 Aligned_cols=64 Identities=30% Similarity=0.376 Sum_probs=44.8
Q ss_pred hHHHHHhcCCHHHhhhhchhccccc-c-----cccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139 117 VNDLIIKLGTTEQKEKYLPRLAQTD-V-----SRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF 180 (216)
Q Consensus 117 ~~~~~~~~g~~~~~~~~l~~~~~~~-l-----g~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~ 180 (216)
....+..+|++++++.+++.+.++. + .+++.|.+.........+ +++|+|||+|.|+++...++
T Consensus 44 ~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad 114 (327)
T cd00567 44 GAALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDAD 114 (327)
T ss_pred chHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEeCCEEEEEEEEEEecCCccCC
Confidence 3456677899999999999887642 2 345555544433334444 78999999999999887544
No 83
>PLN02443 acyl-coenzyme A oxidase
Probab=96.23 E-value=0.0078 Score=52.67 Aligned_cols=65 Identities=22% Similarity=0.227 Sum_probs=48.4
Q ss_pred echhhhHHHHHhcCCHHHhhhhchhccccc------ccccccchhh--hhhhhcccc-CCceeec-----cceeeeecC
Q psy5139 112 IQNTLVNDLIIKLGTTEQKEKYLPRLAQTD------VSRTSRGYKA--LEWHAFYGR-TDSLPLN-----DHLSHISSG 176 (216)
Q Consensus 112 ~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~------lg~~~~g~~~--~~~~~~~~~-~~~~~l~-----g~k~~va~~ 176 (216)
.+..+....+..+|+++|++.|++.+.++. +.++++|++. +.+++++.+ +++|+|| |+|+|+++.
T Consensus 101 ~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~efvIntP~~~g~K~wig~~ 179 (664)
T PLN02443 101 LHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPGGL 179 (664)
T ss_pred ehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccchhhCeEEEEEeCCCCEEEECCCCCCEEEEeecCC
Confidence 333455667888899999999999886543 2467888775 455555554 6789998 999999876
No 84
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....
Probab=94.83 E-value=0.00022 Score=50.03 Aligned_cols=56 Identities=16% Similarity=0.127 Sum_probs=45.6
Q ss_pred ccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------cccceeeeeeccc---ccccccccc
Q psy5139 146 SRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GLSLQILQFQNLS---SDMHMTGLA 213 (216)
Q Consensus 146 ~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~fg~~i~~~Q~v~---ad~~~~~~~ 213 (216)
++|++.+...+..+| ..+++..+|. ++.+++. .||+|+.+||.++ +|+..++++
T Consensus 1 g~G~~~~~~~l~~~R----------~~~~~~~~g~----~~~~l~~a~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~a 66 (150)
T PF00441_consen 1 GQGWAVALDTLNHER----------LMIAAMALGI----ARRALDEAIEYARRRRQFGKPLAEHPAVRRRLADMAARLEA 66 (150)
T ss_dssp TBHHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHHTEETTEEGGGSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHhcccccCcccchhhhHHHHHhhccchhh
Confidence 468888888888888 8888888888 6666543 3999999999999 999888877
Q ss_pred cC
Q psy5139 214 SR 215 (216)
Q Consensus 214 ~r 215 (216)
+|
T Consensus 67 ~~ 68 (150)
T PF00441_consen 67 MR 68 (150)
T ss_dssp HH
T ss_pred hh
Confidence 65
No 85
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A.
Probab=90.54 E-value=0.51 Score=32.01 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=26.3
Q ss_pred HHHHhhHHHHHHhcCChhHHHHHHHHHHhCCc
Q psy5139 42 DIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDL 73 (216)
Q Consensus 42 ~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~ 73 (216)
..|..+..+.|...|++||.++|+|...+...
T Consensus 93 ~lH~~mFip~I~~qgt~EQ~~~Wlp~a~~~~I 124 (125)
T PF14749_consen 93 GLHFGMFIPTIMGQGTEEQQAKWLPKAENYEI 124 (125)
T ss_dssp HHHHHTHHHHHHHHS-HHHHHHHHHHHHTTSS
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHCCcc
Confidence 35778899999999999999999999876543
No 86
>KOG0135|consensus
Probab=77.31 E-value=6.5 Score=33.69 Aligned_cols=68 Identities=13% Similarity=0.252 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCCCCCCCCccH
Q psy5139 21 MTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQEYGGPGLSF 89 (216)
Q Consensus 21 ~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e~~gG~~~~~ 89 (216)
.....+.|.++-.+.++..=+..|..+....+...|++..++ |+++..+-+.. +++++|=..||+...
T Consensus 105 ~k~~al~E~lg~yd~sls~K~~lh~~lfg~AV~~~GT~rH~~-yi~~~~n~ev~gcfamTEl~HGSNt~~ 173 (661)
T KOG0135|consen 105 LKKFALTEALGIYDQSLSAKLGLHFLLFGNAVKSMGTKRHHD-YIQKTENYEVKGCFAMTELGHGSNTKG 173 (661)
T ss_pred HHHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHhhccHHHHH-HHhhhhcceeeeeEEEeeecCCccccc
Confidence 457788999999999987777778778888899999998877 99999998887 679999999998753
No 87
>KOG0136|consensus
Probab=66.87 E-value=6 Score=34.45 Aligned_cols=53 Identities=21% Similarity=0.278 Sum_probs=43.0
Q ss_pred hHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCcee-eecCCCCCCCCccHH
Q psy5139 38 SILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLMG-VEIPQEYGGPGLSFM 90 (216)
Q Consensus 38 ~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~-~~~~e~~gG~~~~~~ 90 (216)
+..+..|..+..+.|..-+++||.++|+++.....+++ ++-+|-..|+.+...
T Consensus 108 ~~pl~lH~~MFvp~l~~q~t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~L 161 (670)
T KOG0136|consen 108 GHPLALHYGMFVPTLKGQGTDEQQEKWLSRALNMEIIGTYAQTELGHGTNLRGL 161 (670)
T ss_pred CchhhhhhhhhhhHhhcCCCHHHHHHHHHhcccceEEEeehhhhhccccccccc
Confidence 34455677788999999999999999999988888875 688888888877543
No 88
>KOG0135|consensus
Probab=63.24 E-value=7.2 Score=33.42 Aligned_cols=89 Identities=16% Similarity=0.292 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhccccc------ccccccchh--hhhhhhcccc-C
Q psy5139 91 TDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTD------VSRTSRGYK--ALEWHAFYGR-T 161 (216)
Q Consensus 91 ~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~------lg~~~~g~~--~~~~~~~~~~-~ 161 (216)
....+.|.++-.|.+++.=+..+..+....+..+|++...+ |+++..+.. +.+.++|+. .+++++++.+ .
T Consensus 106 k~~al~E~lg~yd~sls~K~~lh~~lfg~AV~~~GT~rH~~-yi~~~~n~ev~gcfamTEl~HGSNt~~I~TtatyDP~t 184 (661)
T KOG0135|consen 106 KKFALTEALGIYDQSLSAKLGLHFLLFGNAVKSMGTKRHHD-YIQKTENYEVKGCFAMTELGHGSNTKGIQTTATYDPTT 184 (661)
T ss_pred HHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHhhccHHHHH-HHhhhhcceeeeeEEEeeecCCccccceeeeeeecCCC
Confidence 45667777887788776433334445667888999998877 888765433 245566654 4777777776 6
Q ss_pred Cceeec-----cceeeeecCcccC
Q psy5139 162 DSLPLN-----DHLSHISSGCVGF 180 (216)
Q Consensus 162 ~~~~l~-----g~k~~va~~~~g~ 180 (216)
+-|+|| ..|.|+.+...-.
T Consensus 185 ~EfVinTP~~~A~K~WiGn~a~~a 208 (661)
T KOG0135|consen 185 EEFVINTPDFSAIKCWIGNAAKHA 208 (661)
T ss_pred CeeEecCCcHHHHHHHhccccccc
Confidence 678876 5788888776544
No 89
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=42.96 E-value=3.1 Score=35.32 Aligned_cols=26 Identities=12% Similarity=0.057 Sum_probs=23.3
Q ss_pred eccccceeeeeeccc---ccccccccccC
Q psy5139 190 SCGLSLQILQFQNLS---SDMHMTGLASR 215 (216)
Q Consensus 190 ~~~fg~~i~~~Q~v~---ad~~~~~~~~r 215 (216)
..+|+++|.+||.|| +||.+.+|++|
T Consensus 310 ~~a~~~gi~~~q~VQ~kLAEm~~~~Ea~r 338 (477)
T TIGR02309 310 LMAEGIGADGFQHVQEKIAEIIVYLEAMK 338 (477)
T ss_pred HHHHhhCcccchHHHHHHHHHHHHHHHHH
Confidence 356999999999999 99999999876
No 90
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=33.10 E-value=15 Score=31.25 Aligned_cols=19 Identities=0% Similarity=-0.120 Sum_probs=16.5
Q ss_pred CCceeeccceeeeecCcccC
Q psy5139 161 TDSLPLNDHLSHISSGCVGF 180 (216)
Q Consensus 161 ~~~~~l~g~k~~va~~~~g~ 180 (216)
++||+|||.|.+++++ .++
T Consensus 175 ~dGiVV~GaK~~~T~~-~ad 193 (477)
T TIGR02309 175 DKGVIVRGARMTATFP-IAD 193 (477)
T ss_pred CCCEEEeCHHHhhhhc-ccc
Confidence 8899999999999995 544
No 91
>PHA02095 hypothetical protein
Probab=21.25 E-value=1e+02 Score=18.56 Aligned_cols=36 Identities=6% Similarity=0.033 Sum_probs=24.4
Q ss_pred CCceeeccceeeeecCcccCCCcceeeeeeccccceeeeeeccc
Q psy5139 161 TDSLPLNDHLSHISSGCVGFDGQLKRWMVSCGLSLQILQFQNLS 204 (216)
Q Consensus 161 ~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~~fg~~i~~~Q~v~ 204 (216)
..+|++||.|-+.-.. .-.+++-.-..|.-+||.|-
T Consensus 26 q~~yv~ng~wefsrvd--------gilciegd~~~pm~~f~~ii 61 (84)
T PHA02095 26 QNGYVENGSWEFSRVD--------GILCIEGDKEHPMPDFEHIV 61 (84)
T ss_pred eeeEEecCcEEEEecc--------EEEEecCCCCCCchhheeee
Confidence 5579999988775322 23455556667888888775
Done!