RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5139
(216 letters)
>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and
eukaryotic short/branched chain acyl-CoA dehydrogenases.
Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a
mitochondrial beta-oxidation enzyme. It catalyzes the
alpha,beta dehydrogenation of the corresponding
trans-enoyl-CoA by FAD, which becomes reduced. The
reduced form of SCAD is reoxidized in the oxidative
half-reaction by electron-transferring flavoprotein
(ETF), from which the electrons are transferred to the
mitochondrial respiratory chain coupled with ATP
synthesis. This subgroup also contains the eukaryotic
short/branched chain acyl-CoA dehydrogenase(SBCAD), the
bacterial butyryl-CoA dehydorgenase(BCAD) and
2-methylbutyryl-CoA dehydrogenase, which is involved in
isoleucine catabolism. These enzymes are homotetramers.
Length = 373
Score = 105 bits (265), Expect = 5e-27
Identities = 37/75 (49%), Positives = 54/75 (72%)
Query: 67 RLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGT 126
+A+ LMG+ IP+EYGG GL F+ + +EE+A+VD SV+++V + N+L + IIK GT
Sbjct: 38 EMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELAKVDASVAVIVSVHNSLGANPIIKFGT 97
Query: 127 TEQKEKYLPRLAQTD 141
EQK+KYLP LA +
Sbjct: 98 EEQKKKYLPPLATGE 112
Score = 105 bits (263), Expect = 7e-27
Identities = 36/72 (50%), Positives = 53/72 (73%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
L+G+ IP+EYGG GL F+ + +EE+A+VD SV+++V + N+L + IIK GT EQK+K
Sbjct: 44 LMGIPIPEEYGGAGLDFLAYAIAIEELAKVDASVAVIVSVHNSLGANPIIKFGTEEQKKK 103
Query: 64 YLPRLAQTDLMG 75
YLP LA + +G
Sbjct: 104 YLPPLATGEKIG 115
>gnl|CDD|217220 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal
domain. The N-terminal domain of Acyl-CoA dehydrogenase
is an all-alpha domain.
Length = 113
Score = 96.0 bits (240), Expect = 1e-25
Identities = 34/74 (45%), Positives = 51/74 (68%)
Query: 65 LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
+L + L+G+ IP+EYGG GL ++ L+ EE+AR D SV + + + ++LV I++
Sbjct: 37 WRKLGELGLLGLTIPEEYGGAGLDYLEYALVAEELARADASVGLALSVHSSLVAPPILRF 96
Query: 125 GTTEQKEKYLPRLA 138
GT EQKEKYLP+LA
Sbjct: 97 GTEEQKEKYLPKLA 110
Score = 94.1 bits (235), Expect = 5e-25
Identities = 34/66 (51%), Positives = 48/66 (72%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
LLG+ IP+EYGG GL ++ L+ EE+AR D SV + + + ++LV I++ GT EQKEK
Sbjct: 45 LLGLTIPEEYGGAGLDYLEYALVAEELARADASVGLALSVHSSLVAPPILRFGTEEQKEK 104
Query: 64 YLPRLA 69
YLP+LA
Sbjct: 105 YLPKLA 110
>gnl|CDD|173840 cd01151, GCD, Glutaryl-CoA dehydrogenase. Glutaryl-CoA
dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase,
which catalyzes the oxidative decarboxylation of
glutaryl-CoA to crotonyl-CoA and carbon dioxide in the
catabolism of lysine, hydroxylysine, and tryptophan. It
uses electron transfer flavoprotein (ETF) as an electron
acceptor. GCD is a homotetramer. GCD deficiency leads to
a severe neurological disorder in humans.
Length = 386
Score = 66.6 bits (163), Expect = 5e-13
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
LLG + YG GLS + LI E+ RVD + +Q++LV I G+ EQK+K
Sbjct: 58 LLGA-TIKGYGCAGLSSVAYGLIAREVERVDSGYRSFMSVQSSLVMLPIYDFGSEEQKQK 116
Query: 64 YLPRLAQTDLMG 75
YLP+LA +L+G
Sbjct: 117 YLPKLASGELIG 128
Score = 65.5 bits (160), Expect = 1e-12
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 63 KYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLII 122
K + + + L+G + YG GLS + LI E+ RVD + +Q++LV I
Sbjct: 48 KIIEEMGELGLLGA-TIKGYGCAGLSSVAYGLIAREVERVDSGYRSFMSVQSSLVMLPIY 106
Query: 123 KLGTTEQKEKYLPRLAQ 139
G+ EQK+KYLP+LA
Sbjct: 107 DFGSEEQKQKYLPKLAS 123
>gnl|CDD|173845 cd01156, IVD, Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA
dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase,
which catalyzes the third step in leucine catabolism,
the conversion of isovaleryl-CoA (3-methylbutyryl-CoA)
into 3-methylcrotonyl-CoA. IVD is a homotetramer and has
the greatest affinity for small branched chain
substrates.
Length = 376
Score = 65.9 bits (161), Expect = 9e-13
Identities = 28/72 (38%), Positives = 46/72 (63%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
LLG+ P+EYGG G+ ++ ++I+EEI+R SV++ + L + I + G+ QKEK
Sbjct: 47 LLGITAPEEYGGSGMGYLAHVIIMEEISRASGSVALSYGAHSNLCINQIYRNGSAAQKEK 106
Query: 64 YLPRLAQTDLMG 75
YLP+L + +G
Sbjct: 107 YLPKLISGEHIG 118
Score = 62.8 bits (153), Expect = 1e-11
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 61 KEKYLPR-----LAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNT 115
++ PR + + L+G+ P+EYGG G+ ++ ++I+EEI+R SV++ +
Sbjct: 30 RDNEFPRDLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEISRASGSVALSYGAHSN 89
Query: 116 LVNDLIIKLGTTEQKEKYLPRLA 138
L + I + G+ QKEKYLP+L
Sbjct: 90 LCINQIYRNGSAAQKEKYLPKLI 112
>gnl|CDD|224871 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].
Length = 393
Score = 64.4 bits (157), Expect = 3e-12
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 67 RLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDL---IIK 123
LA+ L+G+ IP+EYGG GLS + ++EE+AR D ++ + + + + L I++
Sbjct: 47 ALAEAGLLGLTIPEEYGGLGLSPLEQAAVLEELARADAGGALALGLTHGGLGALAPTILR 106
Query: 124 LGTTEQKEKYLPRLAQ 139
GT EQK +YLPRLA
Sbjct: 107 FGTEEQKRRYLPRLAS 122
Score = 64.4 bits (157), Expect = 3e-12
Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDL---IIKLGTTEQ 60
LLG+ IP+EYGG GLS + ++EE+AR D ++ + + + + L I++ GT EQ
Sbjct: 53 LLGLTIPEEYGGLGLSPLEQAAVLEELARADAGGALALGLTHGGLGALAPTILRFGTEEQ 112
Query: 61 KEKYLPRLAQTDLMG 75
K +YLPRLA +L+G
Sbjct: 113 KRRYLPRLASGELIG 127
>gnl|CDD|178141 PLN02526, PLN02526, acyl-coenzyme A oxidase.
Length = 412
Score = 61.4 bits (149), Expect = 4e-11
Identities = 43/124 (34%), Positives = 63/124 (50%), Gaps = 9/124 (7%)
Query: 65 LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
+P+L + G I + YG PGLS + E+ARVD S S + + ++L I
Sbjct: 66 IPKLGSLGIAGGTI-KGYGCPGLSITASAIATAEVARVDASCSTFILVHSSLAMLTIALC 124
Query: 125 GTTEQKEKYLPRLAQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQL 184
G+ QK+KYLP LAQ D + AL YG +D+ LN + + G + +GQ
Sbjct: 125 GSEAQKQKYLPSLAQLD----TVACWALT-EPDYG-SDASSLNTTATKVEGGWI-LNGQ- 176
Query: 185 KRWM 188
KRW+
Sbjct: 177 KRWI 180
Score = 59.9 bits (145), Expect = 1e-10
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 13 YGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTD 72
YG PGLS + E+ARVD S S + + ++L I G+ QK+KYLP LAQ D
Sbjct: 82 YGCPGLSITASAIATAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLD 141
Query: 73 LMG 75
+
Sbjct: 142 TVA 144
>gnl|CDD|173850 cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase. VLCAD is
an acyl-CoA dehydrogenase (ACAD), which is found in the
mitochondria of eukaryotes and in some bacteria. It
catalyzes the alpha,beta dehydrogenation of the
corresponding trans-enoyl-CoA by FAD, which becomes
reduced. The reduced form of ACAD is reoxidized in the
oxidative half-reaction by electron-transferring
flavoprotein (ETF), from which the electrons are
transferred to the mitochondrial respiratory chain
coupled with ATP synthesis. VLCAD acts as a homodimer.
Length = 409
Score = 58.2 bits (141), Expect = 3e-10
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 33 VDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTD 92
V P ++ + ND + K+ K L +L + L G+++P+EYGG GL+ T
Sbjct: 35 VGPVEKFFEEVNDPAKNDQLEKI-----PRKTLTQLKELGLFGLQVPEEYGGLGLN-NTQ 88
Query: 93 ILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA 138
+ EI +D S+ + ++ I+ GT QKEKYLP+LA
Sbjct: 89 YARLAEIVGMDLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLA 134
Score = 53.2 bits (128), Expect = 2e-08
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
L G+++P+EYGG GL+ T + EI +D S+ + ++ I+ GT QKEK
Sbjct: 70 LFGLQVPEEYGGLGLN-NTQYARLAEIVGMDLGFSVTLGAHQSIGFKGILLFGTEAQKEK 128
Query: 64 YLPRLA 69
YLP+LA
Sbjct: 129 YLPKLA 134
>gnl|CDD|215284 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase.
Length = 404
Score = 56.8 bits (137), Expect = 1e-09
Identities = 26/65 (40%), Positives = 40/65 (61%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
L G+ P+EYGG GL ++ + +EEI+R SV + + L + +++ GT QKEK
Sbjct: 73 LHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRNGTPAQKEK 132
Query: 64 YLPRL 68
YLP+L
Sbjct: 133 YLPKL 137
Score = 56.4 bits (136), Expect = 2e-09
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 72 DLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKE 131
+L G+ P+EYGG GL ++ + +EEI+R SV + + L + +++ GT QKE
Sbjct: 72 NLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRNGTPAQKE 131
Query: 132 KYLPRL 137
KYLP+L
Sbjct: 132 KYLPKL 137
>gnl|CDD|237277 PRK13026, PRK13026, acyl-CoA dehydrogenase; Reviewed.
Length = 774
Score = 52.7 bits (127), Expect = 3e-08
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 5 LGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTL-VNDLIIKLGTTEQKEK 63
+ IP+EYGG G S + IV +IA S ++ V + N+L +L+ GT EQK+
Sbjct: 123 FALIIPKEYGGKGFSAYANSTIVSKIATRSVSAAVTVMVPNSLGPGELLTHYGTQEQKDY 182
Query: 64 YLPRLAQTDLMGVEIP 79
+LPRLA G EIP
Sbjct: 183 WLPRLAD----GTEIP 194
Score = 48.8 bits (117), Expect = 7e-07
Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 78 IPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTL-VNDLIIKLGTTEQKEKYLPR 136
IP+EYGG G S + IV +IA S ++ V + N+L +L+ GT EQK+ +LPR
Sbjct: 127 IPKEYGGKGFSAYANSTIVSKIATRSVSAAVTVMVPNSLGPGELLTHYGTQEQKDYWLPR 186
Query: 137 LA 138
LA
Sbjct: 187 LA 188
>gnl|CDD|236528 PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed.
Length = 777
Score = 51.4 bits (124), Expect = 9e-08
Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 5 LGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTL-VNDLIIKLGTTEQKEK 63
G+ IP+EYGG S +++++A ++++ V + N+L +L++ GT EQK+
Sbjct: 124 FGMIIPKEYGGLEFSAYAHSRVLQKLASRSGTLAVTVMVPNSLGPGELLLHYGTDEQKDH 183
Query: 64 YLPRLAQTDLMGVEIP 79
YLPRLA+ G EIP
Sbjct: 184 YLPRLAR----GEEIP 195
Score = 46.0 bits (110), Expect = 6e-06
Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 78 IPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTL-VNDLIIKLGTTEQKEKYLPR 136
IP+EYGG S +++++A ++++ V + N+L +L++ GT EQK+ YLPR
Sbjct: 128 IPKEYGGLEFSAYAHSRVLQKLASRSGTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLPR 187
Query: 137 LAQ 139
LA+
Sbjct: 188 LAR 190
>gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase. LCAD is an
acyl-CoA dehydrogenases (ACAD), which is found in the
mitochondria of eukaryotes and in some prokaryotes. It
catalyzes the alpha, beta dehydrogenation of the
corresponding trans-enoyl-CoA by FAD, which becomes
reduced. The reduced form of LCAD is reoxidized in the
oxidative half-reaction by electron-transferring
flavoprotein (ETF), from which the electrons are
transferred to the mitochondrial respiratory chain
coupled with ATP synthesis. LCAD acts as a homodimer.
Length = 372
Score = 50.6 bits (121), Expect = 2e-07
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
LLGV P+EYGG G ++ ++ EE+AR + + +V+ I + G+ EQKE+
Sbjct: 44 LLGVGFPEEYGGIGGDLLSAAVLWEELARAG-GSGPGLSLHTDIVSPYITRAGSPEQKER 102
Query: 64 YLPRLAQTDLMGVEIPQEYGG 84
LP++ +G E G
Sbjct: 103 VLPQMVAGKKIGAIAMTEPGA 123
Score = 48.3 bits (115), Expect = 9e-07
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 60 QKEKYLPR-----LAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQN 114
+K +PR + L+GV P+EYGG G ++ ++ EE+AR + +
Sbjct: 26 EKAGEVPREVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELARAG-GSGPGLSLHT 84
Query: 115 TLVNDLIIKLGTTEQKEKYLPRLA 138
+V+ I + G+ EQKE+ LP++
Sbjct: 85 DIVSPYITRAGSPEQKERVLPQMV 108
>gnl|CDD|173841 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar
to fadE6, fadE17, and fadE26. Putative acyl-CoA
dehydrogenases (ACAD). Mitochondrial acyl-CoA
dehydrogenases (ACAD) catalyze the alpha, beta
dehydrogenation of the corresponding trans-enoyl-CoA by
FAD, which becomes reduced. The reduced form of ACAD is
reoxidized in the oxidative half-reaction by
electron-transferring flavoprotein (ETF), from which the
electrons are transferred to the mitochondrial
respiratory chain coupled with ATP synthesis. The ACD
family includes the eukaryotic beta-oxidation, as well
as amino acid catabolism enzymes. These enzymes share
high sequence similarity, but differ in their substrate
specificities. The mitochondrial ACD's are generally
homotetramers and have an active site glutamate at a
conserved position.
Length = 380
Score = 48.5 bits (116), Expect = 7e-07
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 56 GTTEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNT 115
E + ++ LA P+EYGG G S M ++ EE+A V +
Sbjct: 32 EGREDRRRWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREEMAAAGAPVPFNQIGIDL 91
Query: 116 LVNDLIIKLGTTEQKEKYLPRLA 138
I+ GT EQK ++LP +
Sbjct: 92 AGP-TILAYGTDEQKRRFLPPIL 113
Score = 47.3 bits (113), Expect = 2e-06
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
P+EYGG G S M ++ EE+A V + I+ GT EQK +
Sbjct: 49 WAAPGWPKEYGGRGASLMEQLIFREEMAAAGAPVPFNQIGIDLAGP-TILAYGTDEQKRR 107
Query: 64 YLPRLAQTDLM 74
+LP + + +
Sbjct: 108 FLPPILSGEEI 118
>gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase. MCADs are
mitochondrial beta-oxidation enzymes, which catalyze the
alpha,beta dehydrogenation of the corresponding medium
chain acyl-CoA by FAD, which becomes reduced. The
reduced form of MCAD is reoxidized in the oxidative
half-reaction by electron-transferring flavoprotein
(ETF), from which the electrons are transferred to the
mitochondrial respiratory chain coupled with ATP
synthesis. MCAD is a homotetramer.
Length = 378
Score = 47.6 bits (113), Expect = 1e-06
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
L+ IP++ GG GL LI EE+A V ++ N+L +I G EQK+K
Sbjct: 46 LMNTHIPEDCGGLGLGTFDTCLITEELAYGCTGVQTAIE-ANSLGQMPVIISGNDEQKKK 104
Query: 64 YLPRLAQTDLM 74
YL R+ + LM
Sbjct: 105 YLGRMTEEPLM 115
Score = 47.6 bits (113), Expect = 2e-06
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 73 LMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 132
LM IP++ GG GL LI EE+A V ++ N+L +I G EQK+K
Sbjct: 46 LMNTHIPEDCGGLGLGTFDTCLITEELAYGCTGVQTAIE-ANSLGQMPVIISGNDEQKKK 104
Query: 133 YLPRLAQ 139
YL R+ +
Sbjct: 105 YLGRMTE 111
>gnl|CDD|173851 cd01162, IBD, Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA
dehydrogenase (IBD) catalyzes the alpha, beta-
dehydrogenation of short branched chain acyl-CoA
intermediates in valine catabolism. It is predicted to
be a homotetramer.
Length = 375
Score = 47.1 bits (112), Expect = 2e-06
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 69 AQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTE 128
A+ G+ I + GG GLS + +I E ++ S + + I N + +I G E
Sbjct: 42 AELGFGGIYIRDDVGGSGLSRLDASIIFEALSTGCVSTAAYISIHN-MCAWMIDSFGNDE 100
Query: 129 QKEKYLPRLAQTDV 142
Q+E++LP L +
Sbjct: 101 QRERFLPDLCTMEK 114
Score = 46.7 bits (111), Expect = 3e-06
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
G+ I + GG GLS + +I E ++ S + + I N + +I G EQ+E+
Sbjct: 46 FGGIYIRDDVGGSGLSRLDASIIFEALSTGCVSTAAYISIHN-MCAWMIDSFGNDEQRER 104
Query: 64 YLPRLAQTDLMG 75
+LP L + +
Sbjct: 105 FLPDLCTMEKLA 116
>gnl|CDD|173852 cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C.
DszC is a flavin reductase dependent enzyme, which
catalyzes the first two steps of DBT desulfurization in
mesophilic bacteria. DszC converts DBT to DBT-sulfoxide,
which is then converted to DBT-sulfone. Bacteria with
this enzyme are candidates for the removal of organic
sulfur compounds from fossil fuels, which pollute the
environment. An equivalent enzyme tdsC, is found in
thermophilic bacteria. This alignment also contains a
closely related uncharacterized subgroup.
Length = 377
Score = 43.5 bits (103), Expect = 4e-05
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
L + +P+EYGG G S +V E+A D +++ + V L++ G + +++
Sbjct: 36 LGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHFGFVEALLL-AGPEQFRKR 94
Query: 64 YLPRLAQTDLMG 75
+ R+ + G
Sbjct: 95 WFGRVLNGWIFG 106
Score = 41.9 bits (99), Expect = 1e-04
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 67 RLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGT 126
L Q+ L + +P+EYGG G S +V E+A D +++ + V L++ G
Sbjct: 30 LLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHFGFVEALLL-AGP 88
Query: 127 TEQKEKYLPRLAQ 139
+ ++++ R+
Sbjct: 89 EQFRKRWFGRVLN 101
>gnl|CDD|188537 TIGR04022, sulfur_SfnB, sulfur acquisition oxidoreductase, SfnB
family. Members of this protein family belong to the
greater family of acyl-CoA dehydrogenases. This family
includes the sulfate starvation induced protein SfnB of
Pseudomonas putida strain DS1, which is both encoded
nearby to and phylogenetically closely correlated with
the dimethyl sulphone monooxygenase SfnG. This family
shows considerable sequence similarity to the
Rhodococcus dibenzothiophene desulfurization enzyme
DszC, although that enzyme falls outside of the scope of
this family [Central intermediary metabolism, Sulfur
metabolism].
Length = 391
Score = 41.5 bits (98), Expect = 2e-04
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 62 EKYLP-----RLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTL 116
E+ LP +Q+ L G+ +P+ YGG G+S+ T ++ I+ DPS+ + QN
Sbjct: 31 ERRLPWAELDAFSQSGLWGITVPRAYGGAGVSYATLAEVIAIISAADPSLGQIP--QNHF 88
Query: 117 -VNDLIIKLGTTEQKEKY 133
+++ G+ EQK +
Sbjct: 89 YALEVLRLTGSEEQKRFF 106
Score = 39.2 bits (92), Expect = 9e-04
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTL-VNDLIIKLGTTEQKE 62
L G+ +P+ YGG G+S+ T ++ I+ DPS+ + QN +++ G+ EQK
Sbjct: 47 LWGITVPRAYGGAGVSYATLAEVIAIISAADPSLGQIP--QNHFYALEVLRLTGSEEQKR 104
Query: 63 KY 64
+
Sbjct: 105 FF 106
>gnl|CDD|132248 TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit.
Members of this protein family are the PimC proteins of
species such as Rhodopseudomonas palustris and
Bradyrhizobium japonicum. The pimFABCDE operon encodes
proteins for the metabolism of straight chain
dicarboxylates of seven to fourteen carbons. Especially
relevant is pimeloyl-CoA, basis of the gene symbol, as
it is a catabolite of benzoyl-CoA degradation, which
occurs in Rhodopseudomonas palustris.
Length = 395
Score = 41.2 bits (96), Expect = 2e-04
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 10 PQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA 69
P++YGG G + + + EE+ + + ++V +I G EQK+++LPR+A
Sbjct: 60 PKQYGGTGWTSVQHYIFNEELQSAPAPQPLAFGV--SMVGPVIYTFGNEEQKKRFLPRIA 117
Query: 70 QTD 72
D
Sbjct: 118 NVD 120
Score = 41.2 bits (96), Expect = 2e-04
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 79 PQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA 138
P++YGG G + + + EE+ + + ++V +I G EQK+++LPR+A
Sbjct: 60 PKQYGGTGWTSVQHYIFNEELQSAPAPQPLAFGV--SMVGPVIYTFGNEEQKKRFLPRIA 117
Query: 139 QTD 141
D
Sbjct: 118 NVD 120
>gnl|CDD|185640 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional.
Length = 410
Score = 38.8 bits (90), Expect = 0.001
Identities = 16/73 (21%), Positives = 36/73 (49%)
Query: 65 LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
+L +MGV +P+ GG G+ + ++I E+++ DP + + L +
Sbjct: 74 FKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHHELSKYDPGFCLAYLAHSMLFVNNFYYS 133
Query: 125 GTTEQKEKYLPRL 137
+ Q+ ++LP++
Sbjct: 134 ASPAQRARWLPKV 146
Score = 38.0 bits (88), Expect = 0.002
Identities = 23/100 (23%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
++GV +P+ GG G+ + ++I E+++ DP + + L + + Q+ +
Sbjct: 82 VMGVTVPEADGGAGMDAVAAVIIHHELSKYDPGFCLAYLAHSMLFVNNFYYSASPAQRAR 141
Query: 64 YLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVD 103
+LP++ + +G E PG TD+L + A+ D
Sbjct: 142 WLPKVLTGEHVGAMGMSE---PGAG--TDVLGMRTTAKKD 176
>gnl|CDD|173842 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to
fadE5. Putative acyl-CoA dehydrogenase (ACAD).
Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze
the alpha,beta dehydrogenation of the corresponding
trans-enoyl-CoA by FAD, which becomes reduced. The
reduced form of ACAD is reoxidized in the oxidative
half-reaction by electron-transferring flavoprotein
(ETF), from which the electrons are transferred to the
mitochondrial respiratory chain coupled with ATP
synthesis. The ACD family includes the eukaryotic
beta-oxidation, as well as amino acid catabolism
enzymes. These enzymes share high sequence similarity,
but differ in their substrate specificities. The
mitochondrial ACD's are generally homotetramers and have
an active site glutamate at a conserved position.
Length = 407
Score = 38.1 bits (89), Expect = 0.002
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 73 LMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 132
M + +P+EYGG GL + E +R D + Q ++ GT Q+EK
Sbjct: 50 WMALGVPEEYGGQGLPITVYSALAEIFSRGDAPLMYASGTQGAA--ATLLAHGTEAQREK 107
Query: 133 YLPRLA 138
++PRLA
Sbjct: 108 WIPRLA 113
Score = 35.8 bits (83), Expect = 0.011
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
+ + +P+EYGG GL + E +R D + Q ++ GT Q+EK
Sbjct: 50 WMALGVPEEYGGQGLPITVYSALAEIFSRGDAPLMYASGTQGAA--ATLLAHGTEAQREK 107
Query: 64 YLPRLA 69
++PRLA
Sbjct: 108 WIPRLA 113
>gnl|CDD|132251 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-CoA dehydrogenase.
Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the
anaerobic degradation of benzoyl-CoA derived from
varioius aromatic compounds, in Rhodopseudomonas
palustris but not Thauera aromatica. The aliphatic
compound cyclohexanecarboxylate, can be converted to the
same intermediate in two steps. The first step is its
ligation to coenzyme A. The second is the action of this
enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Length = 372
Score = 37.6 bits (87), Expect = 0.003
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
+G E+P+E+GG G+ + +I E+IAR D S+S V++ +L ++ + E +
Sbjct: 46 FIGPELPEEHGGLGMGCLAAGVIHEQIARADLSMS-YVNLLASLNGQILAQHARPEIAKP 104
Query: 64 YLPRL 68
+L +L
Sbjct: 105 WLGQL 109
Score = 37.6 bits (87), Expect = 0.003
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 58 TEQKEKYLPR-LAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTL 116
T ++ L R + + +G E+P+E+GG G+ + +I E+IAR D S+S V++ +L
Sbjct: 30 TRVLDRELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQIARADLSMS-YVNLLASL 88
Query: 117 VNDLIIKLGTTEQKEKYLPRL 137
++ + E + +L +L
Sbjct: 89 NGQILAQHARPEIAKPWLGQL 109
>gnl|CDD|185635 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional.
Length = 622
Score = 37.2 bits (86), Expect = 0.005
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 6 GVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYL 65
G+ P+EYGG L + E +A + S+ + N L+ G+ EQKE+YL
Sbjct: 115 GISEPEEYGGQALPLSVGFITRELMATANWGFSMYPGLSIGAANTLMA-WGSEEQKEQYL 173
Query: 66 PRLAQTDLMG 75
+L + G
Sbjct: 174 TKLVSGEWSG 183
Score = 36.8 bits (85), Expect = 0.007
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 75 GVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYL 134
G+ P+EYGG L + E +A + S+ + N L+ G+ EQKE+YL
Sbjct: 115 GISEPEEYGGQALPLSVGFITRELMATANWGFSMYPGLSIGAANTLMA-WGSEEQKEQYL 173
Query: 135 PRLAQTDVSRT 145
+L + S T
Sbjct: 174 TKLVSGEWSGT 184
>gnl|CDD|183454 PRK12341, PRK12341, putative acyl-CoA dehydrogenase; Provisional.
Length = 381
Score = 35.9 bits (83), Expect = 0.012
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
+LGV P+E+GG ++T +L++EE+++ ++ + Q + + G+ EQ K
Sbjct: 53 MLGV--PEEFGGTPADYVTQMLVLEEVSKCGAPAFLITNGQCI---HSMRRFGSAEQLRK 107
Score = 34.7 bits (80), Expect = 0.028
Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 78 IPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 132
+P+E+GG ++T +L++EE+++ ++ + Q + + G+ EQ K
Sbjct: 56 VPEEFGGTPADYVTQMLVLEEVSKCGAPAFLITNGQCI---HSMRRFGSAEQLRK 107
>gnl|CDD|179566 PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated.
Length = 380
Score = 34.4 bits (79), Expect = 0.036
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 58 TEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLV 117
+ E+++ LA + + IP+E+GG F+T + E+ R+ +L +
Sbjct: 36 SVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLGAPTYVLYQLPGGF- 94
Query: 118 NDLIIKLGTTEQKEKYL 134
+ ++ GT EQ +K +
Sbjct: 95 -NTFLREGTQEQIDKIM 110
Score = 32.1 bits (73), Expect = 0.20
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 9 IPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYL 65
IP+E+GG F+T + E+ R+ +L + + ++ GT EQ +K +
Sbjct: 56 IPEEHGGLDAGFVTLAAVWMELGRLGAPTYVLYQLPGGF--NTFLREGTQEQIDKIM 110
>gnl|CDD|215342 PLN02636, PLN02636, acyl-coenzyme A oxidase.
Length = 686
Score = 32.9 bits (75), Expect = 0.10
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 26 IVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLMG 75
I E + VD S+ I + +Q +L +I LGT + ++KY + D G
Sbjct: 126 ITEAVGSVDMSLGIKLGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYPG 175
Score = 32.1 bits (73), Expect = 0.19
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 95 IVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYL 134
I E + VD S+ I + +Q +L +I LGT + ++KY
Sbjct: 126 ITEAVGSVDMSLGIKLGVQYSLWGGSVINLGTKKHRDKYF 165
>gnl|CDD|185636 PTZ00457, PTZ00457, acyl-CoA dehydrogenase; Provisional.
Length = 520
Score = 32.9 bits (75), Expect = 0.11
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 1 MTTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQ 60
+ L G I EYGG GL LI EE+ S + + L+ +G+ E
Sbjct: 62 LGNLYGARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKEL 121
Query: 61 KEKYLPRLAQ-TDLMGVEIPQEYGGPGLSFMT 91
K KYL ++ T +MG +E G +S T
Sbjct: 122 KGKYLTAMSDGTIMMGWAT-EEGCGSDISMNT 152
Score = 31.8 bits (72), Expect = 0.28
Identities = 21/64 (32%), Positives = 28/64 (43%)
Query: 71 TDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQK 130
+L G I EYGG GL LI EE+ S + + L+ +G+ E K
Sbjct: 63 GNLYGARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELK 122
Query: 131 EKYL 134
KYL
Sbjct: 123 GKYL 126
>gnl|CDD|173838 cd00567, ACAD, Acyl-CoA dehydrogenase. Both mitochondrial
acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA
oxidases (AXO) catalyze the alpha,beta dehydrogenation
of the corresponding trans-enoyl-CoA by FAD, which
becomes reduced. The reduced form of ACAD is reoxidized
in the oxidative half-reaction by electron-transferring
flavoprotein (ETF), from which the electrons are
transferred to the mitochondrial respiratory chain
coupled with ATP synthesis. In contrast, AXO catalyzes
a different oxidative half-reaction, in which the
reduced FAD is reoxidized by molecular oxygen. The ACAD
family includes the eukaryotic beta-oxidation enzymes,
short (SCAD), medium (MCAD), long (LCAD) and very-long
(VLCAD) chain acyl-CoA dehydrogenases. These enzymes
all share high sequence similarity, but differ in their
substrate specificities. The ACAD family also includes
amino acid catabolism enzymes such as Isovaleryl-CoA
dehydrogenase (IVD), short/branched chain acyl-CoA
dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase
(IBDH), glutaryl-CoA deydrogenase (GCD) and
Crotonobetainyl-CoA dehydrogenase. The mitochondrial
ACAD's are generally homotetramers, except for VLCAD,
which is a homodimer. Related enzymes include the SOS
adaptive reponse proten aidB, Naphthocyclinone
hydroxylase (NcnH), and and Dibenzothiophene (DBT)
desulfurization enzyme C (DszC).
Length = 327
Score = 32.6 bits (75), Expect = 0.13
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 51 LIIKLGTTEQKEKYLPRLAQTDLMG 75
L++ GT EQKE+YLP LA + +
Sbjct: 47 LLLAYGTEEQKERYLPPLASGEAIA 71
Score = 32.3 bits (74), Expect = 0.14
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 120 LIIKLGTTEQKEKYLPRLAQ 139
L++ GT EQKE+YLP LA
Sbjct: 47 LLLAYGTEEQKERYLPPLAS 66
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 31.2 bits (70), Expect = 0.51
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 64 YLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIK 123
Y ++A+ D M IP Y PG S ++++ P + +LVD DL++
Sbjct: 1104 YNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKE----PYIVVLVD----EFADLMMT 1155
Query: 124 LGTTEQKEKYLPRLAQ 139
+G ++ E+ + RLAQ
Sbjct: 1156 VG--KKVEELIARLAQ 1169
>gnl|CDD|177858 PLN02208, PLN02208, glycosyltransferase family protein.
Length = 442
Score = 30.0 bits (67), Expect = 0.94
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 10/54 (18%)
Query: 163 SLPLNDHLSHISSGCVGFDGQLKRWMVSCGLSLQIL----QFQNLSSDMHMTGL 212
S PL + SH SG + +V C L QI+ QFQ L M +TGL
Sbjct: 234 SKPLEEQWSHFLSGFP------PKSVVFCSLGSQIILEKDQFQELCLGMELTGL 281
>gnl|CDD|173848 cd01159, NcnH, Naphthocyclinone hydroxylase. Naphthocyclinone is
an aromatic polyketide and an antibiotic, which is
active against Gram-positive bacteria. Polyketides are
secondary metabolites, which have important biological
functions such as antitumor, immunosupressive or
antibiotic activities. NcnH is a hydroxylase involved
in the biosynthesis of naphthocyclinone and possibly
other polyketides.
Length = 370
Score = 27.7 bits (62), Expect = 5.1
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 10 PQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNT 46
P+ YGG F + +A S + + I T
Sbjct: 42 PKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVAT 78
Score = 27.7 bits (62), Expect = 5.1
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 79 PQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNT 115
P+ YGG F + +A S + + I T
Sbjct: 42 PKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVAT 78
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.138 0.395
Gapped
Lambda K H
0.267 0.0838 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,099,848
Number of extensions: 1054383
Number of successful extensions: 741
Number of sequences better than 10.0: 1
Number of HSP's gapped: 719
Number of HSP's successfully gapped: 60
Length of query: 216
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 123
Effective length of database: 6,812,680
Effective search space: 837959640
Effective search space used: 837959640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.5 bits)