RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5139
(216 letters)
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion,
oxidoreductase, transit peptide, fatty acid metabolism,
FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}
Length = 404
Score = 112 bits (282), Expect = 2e-29
Identities = 39/74 (52%), Positives = 54/74 (72%)
Query: 65 LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
+ L Q LMG+E+ EYGG G SF++ +L++EE+A+VD SV++ +IQNTL+N LI K
Sbjct: 66 IQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKH 125
Query: 125 GTTEQKEKYLPRLA 138
GT EQK YLP+L
Sbjct: 126 GTEEQKATYLPQLT 139
Score = 106 bits (268), Expect = 1e-27
Identities = 36/66 (54%), Positives = 51/66 (77%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
L+G+E+ EYGG G SF++ +L++EE+A+VD SV++ +IQNTL+N LI K GT EQK
Sbjct: 74 LMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKAT 133
Query: 64 YLPRLA 69
YLP+L
Sbjct: 134 YLPQLT 139
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid
metabolism, FAD, polymorphism, flavoprotein,
mitochondrion, disease mutation; HET: FAD COS; 1.9A
{Homo sapiens} PDB: 1jqi_A*
Length = 391
Score = 98.3 bits (246), Expect = 2e-24
Identities = 20/75 (26%), Positives = 43/75 (57%)
Query: 65 LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
+ ++ L+ +++P+E GG GL ++ + +EEI+R S +++ + N+L I+K
Sbjct: 43 VKKMGGLGLLAMDVPEELGGAGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKF 102
Query: 125 GTTEQKEKYLPRLAQ 139
G+ EQK+ ++
Sbjct: 103 GSKEQKQAWVTPFTS 117
Score = 94.1 bits (235), Expect = 6e-23
Identities = 23/72 (31%), Positives = 43/72 (59%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
LL +++P+E GG GL ++ + +EEI+R S +++ + N+L I+K G+ EQK+
Sbjct: 51 LLAMDVPEELGGAGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQA 110
Query: 64 YLPRLAQTDLMG 75
++ D +G
Sbjct: 111 WVTPFTSGDKIG 122
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national
project protein structural and functional analyses; HET:
FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1
PDB: 1ws9_A 2cx9_A*
Length = 387
Score = 96.8 bits (242), Expect = 6e-24
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 65 LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
+ +LA+ + G +P+ YGG GLS +VE IA D ++++ V N+L I+
Sbjct: 44 VRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLA 103
Query: 125 GTTEQKEKYLPRLAQ 139
G+ QKE +LP+LA
Sbjct: 104 GSEAQKEAFLPKLAS 118
Score = 93.0 bits (232), Expect = 2e-22
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
+ G +P+ YGG GLS +VE IA D ++++ V N+L I+ G+ QKE
Sbjct: 52 VFGALVPEAYGGAGLSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEA 111
Query: 64 YLPRLAQTDLMG 75
+LP+LA + +G
Sbjct: 112 FLPKLASGEALG 123
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national
project on protein STR and functional analyses; HET:
FAD; 2.50A {Thermus thermophilus}
Length = 372
Score = 96.4 bits (241), Expect = 8e-24
Identities = 29/75 (38%), Positives = 49/75 (65%)
Query: 65 LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
L LA+ L+G+ P+E+GG GL +T L +EE+A DPSV+++V + + L ++++
Sbjct: 40 LKALAELGLLGMTTPEEWGGVGLDSVTWALALEELAAADPSVAVIVSVTSGLPQYMLLRF 99
Query: 125 GTTEQKEKYLPRLAQ 139
G+ QK +YL LA+
Sbjct: 100 GSEAQKRRYLVPLAR 114
Score = 92.5 bits (231), Expect = 2e-22
Identities = 28/72 (38%), Positives = 48/72 (66%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
LLG+ P+E+GG GL +T L +EE+A DPSV+++V + + L ++++ G+ QK +
Sbjct: 48 LLGMTTPEEWGGVGLDSVTWALALEELAAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRR 107
Query: 64 YLPRLAQTDLMG 75
YL LA+ + +G
Sbjct: 108 YLVPLARGEWIG 119
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain
acyl-COA dehydrogenase, flavoprotein, oxidoreductase;
HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP:
a.29.3.1 e.6.1.1
Length = 383
Score = 92.9 bits (232), Expect = 1e-22
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 65 LPRLAQTDLMGVEIPQEYGGPGLS---FMTDILIVEEIARVDPSVSILVDIQNTLVNDLI 121
+ L + G ++YGG G ++ IL VEE+A+ D V+I + +L + I
Sbjct: 42 IDELLSLGITGAYFEEKYGGSGDDGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPI 101
Query: 122 IKLGTTEQKEKYLPRLAQ 139
+ GT QKEK+L L +
Sbjct: 102 WQFGTEAQKEKFLVPLVE 119
Score = 88.7 bits (221), Expect = 5e-21
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 4 LLGVEIPQEYGGPGLS---FMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQ 60
+ G ++YGG G ++ IL VEE+A+ D V+I + +L + I + GT Q
Sbjct: 50 ITGAYFEEKYGGSGDDGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQ 109
Query: 61 KEKYLPRLAQTDLMG 75
KEK+L L + +G
Sbjct: 110 KEKFLVPLVEGTKLG 124
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
FDA; 2.10A {Mycobacterium thermoresistibile}
Length = 393
Score = 91.8 bits (229), Expect = 4e-22
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 67 RLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGT 126
L + + +P+EYGG G + +++EE+ARVD S S++ + N L +I G+
Sbjct: 58 ALNSSGFSAIHVPEEYGGQGADSVATCIVIEEVARVDCSASLIPAV-NKLGTMGLILRGS 116
Query: 127 TEQKEKYLPRLAQ 139
E K++ LP +A
Sbjct: 117 EELKKQVLPAVAS 129
Score = 88.7 bits (221), Expect = 5e-21
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
+ +P+EYGG G + +++EE+ARVD S S++ + N L +I G+ E K++
Sbjct: 64 FSAIHVPEEYGGQGADSVATCIVIEEVARVDCSASLIPAV-NKLGTMGLILRGSEELKKQ 122
Query: 64 YLPRLAQTDLMG 75
LP +A + M
Sbjct: 123 VLPAVASGEAMA 134
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron
transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1
e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A*
3mdd_A* 3mde_A*
Length = 396
Score = 91.4 bits (228), Expect = 5e-22
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 67 RLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGT 126
R + LM IP+ GG GL LI EE+A V ++ N+L II G
Sbjct: 55 RAWELGLMNTHIPENCGGLGLGTFDACLISEELAYGCTGVQTAIEG-NSLGQMPIIIAGN 113
Query: 127 TEQKEKYLPRLAQ 139
+QK+KYL R+ +
Sbjct: 114 DQQKKKYLGRMTE 126
Score = 89.9 bits (224), Expect = 2e-21
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
L+ IP+ GG GL LI EE+A V ++ N+L II G +QK+K
Sbjct: 61 LMNTHIPENCGGLGLGTFDACLISEELAYGCTGVQTAIEG-NSLGQMPIIIAGNDQQKKK 119
Query: 64 YLPRLAQTDLMG 75
YL R+ + LM
Sbjct: 120 YLGRMTEEPLMC 131
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening,
optimization, protein crystallization, structural
genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei
1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A
Length = 396
Score = 91.5 bits (228), Expect = 6e-22
Identities = 30/75 (40%), Positives = 47/75 (62%)
Query: 65 LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
+ + L+G IP++YGGPGL +++ LI E+ RVD ++ +Q++LV I +
Sbjct: 56 FREMGEIGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEF 115
Query: 125 GTTEQKEKYLPRLAQ 139
G+ QKEKYLP+LA
Sbjct: 116 GSDAQKEKYLPKLAT 130
Score = 89.2 bits (222), Expect = 4e-21
Identities = 32/72 (44%), Positives = 48/72 (66%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
LLG IP++YGGPGL +++ LI E+ RVD ++ +Q++LV I + G+ QKEK
Sbjct: 64 LLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEK 123
Query: 64 YLPRLAQTDLMG 75
YLP+LA + +G
Sbjct: 124 YLPKLATGEWIG 135
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA
dehydrogenase, long cell EDGE, FAD, inhibitor,
flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium
oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A*
2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*
Length = 439
Score = 91.2 bits (227), Expect = 9e-22
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 67 RLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGT 126
+ L+ ++P GG S + + +I+EE+ V+P+ SI + L +I +
Sbjct: 51 EAVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVA-TALGLMPVILCDS 109
Query: 127 TEQKEKYLPRLAQ 139
+EK+L
Sbjct: 110 PSLQEKFLKPFIS 122
Score = 87.0 bits (216), Expect = 3e-20
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
L+ ++P GG S + + +I+EE+ V+P+ SI + L +I + +EK
Sbjct: 57 LIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEK 115
Query: 64 YLPRLAQ 70
+L
Sbjct: 116 FLKPFIS 122
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD,
STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus
thermophilus}
Length = 385
Score = 90.7 bits (226), Expect = 9e-22
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 65 LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
+PR A+ +G +P EYGG G+S LI E+ RVD + V +Q++LV I
Sbjct: 48 IPRFAELGFLGPTLPPEYGGAGVSSAAYGLICYELERVDSGLRSFVSVQSSLVMYPIYAY 107
Query: 125 GTTEQKEKYLPRLAQ 139
G+ EQK ++LP+LA+
Sbjct: 108 GSEEQKREFLPKLAR 122
Score = 87.6 bits (218), Expect = 1e-20
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
LG +P EYGG G+S LI E+ RVD + V +Q++LV I G+ EQK +
Sbjct: 56 FLGPTLPPEYGGAGVSSAAYGLICYELERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKRE 115
Query: 64 YLPRLAQTDLMG 75
+LP+LA+ +++G
Sbjct: 116 FLPKLARGEMVG 127
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA
dehydrogenase, , aldehyde dehydrogenase, oxidoreductase;
HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP:
a.29.3.1 e.6.1.1
Length = 366
Score = 89.5 bits (223), Expect = 2e-21
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 65 LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
L RL L+ E+ E+GG GL + + + S+ ++ Q + + +L
Sbjct: 30 LVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTSQG-MAAWTVQRL 88
Query: 125 GTTEQKEKYLPRLAQ 139
G Q+ +L L
Sbjct: 89 GDAGQRATFLKELTS 103
Score = 84.5 bits (210), Expect = 2e-19
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
LL E+ E+GG GL + + + S+ ++ Q + + +LG Q+
Sbjct: 38 LLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTSQG-MAAWTVQRLGDAGQRAT 96
Query: 64 YLPRLAQ 70
+L L
Sbjct: 97 FLKELTS 103
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP:
a.29.3.1 e.6.1.1
Length = 379
Score = 89.5 bits (223), Expect = 2e-21
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 67 RLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGT 126
+L + L+ IP+EYGG GL + ++++ EE+A + + + + L ++ GT
Sbjct: 44 KLHEVGLLNAIIPEEYGGMGLKMLDEVIVGEELAYACMGIYTIP-MASDLGITPVLLAGT 102
Query: 127 TEQKEKYLPRLAQ 139
EQKE++L L +
Sbjct: 103 EEQKERFLRPLTE 115
Score = 87.2 bits (217), Expect = 2e-20
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
LL IP+EYGG GL + ++++ EE+A + + + + L ++ GT EQKE+
Sbjct: 50 LLNAIIPEEYGGMGLKMLDEVIVGEELAYACMGIYTIP-MASDLGITPVLLAGTEEQKER 108
Query: 64 YLPRLAQTDLMG 75
+L L + +
Sbjct: 109 FLRPLTEKPALA 120
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid
metabolism, transit peptide, disease mutation, LI
metabolism, coenzyme A dehydrogenase; HET: FAD TH3;
1.45A {Homo sapiens} PDB: 3b96_A*
Length = 607
Score = 90.5 bits (225), Expect = 2e-21
Identities = 26/77 (33%), Positives = 37/77 (48%)
Query: 62 EKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLI 121
E L + G+++P E GG GL +VE + D V I + ++ I
Sbjct: 82 ETTWQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGI 141
Query: 122 IKLGTTEQKEKYLPRLA 138
+ GT QKEKYLP+LA
Sbjct: 142 LLFGTKAQKEKYLPKLA 158
Score = 89.0 bits (221), Expect = 8e-21
Identities = 24/72 (33%), Positives = 36/72 (50%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
G+++P E GG GL +VE + D V I + ++ I+ GT QKEK
Sbjct: 93 AFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEK 152
Query: 64 YLPRLAQTDLMG 75
YLP+LA + +
Sbjct: 153 YLPKLASGETVA 164
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial;
flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC;
1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Length = 393
Score = 89.5 bits (223), Expect = 3e-21
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 65 LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
+ + AQ GV I + GG GLS + +I E +A S + + I N + +I
Sbjct: 56 MRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATGCTSTTAYISIHN-MCAWMIDSF 114
Query: 125 GTTEQKEKYLPRLAQ 139
G EQ+ K+ P L
Sbjct: 115 GNEEQRHKFCPPLCT 129
Score = 86.0 bits (214), Expect = 5e-20
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
GV I + GG GLS + +I E +A S + + I N + +I G EQ+ K
Sbjct: 64 FGGVYIQTDVGGSGLSRLDTSVIFEALATGCTSTTAYISIHN-MCAWMIDSFGNEEQRHK 122
Query: 64 YLPRLAQTDLMG 75
+ P L +
Sbjct: 123 FCPPLCTMEKFA 134
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for
infectious disease, S FAD, FADH, tuberculosis,
oxidoredu; HET: FAD; 2.35A {Mycobacterium
thermoresistibile}
Length = 387
Score = 88.0 bits (219), Expect = 9e-21
Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 65 LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
+L L+ + P+E+GG G + + ++EEIA SV++ V + ++L + ++
Sbjct: 53 FEQLGAAGLLSLPQPEEWGGGGQPYEVYLQVLEEIAARWASVAVAVSV-HSLSSHPLLVF 111
Query: 125 GTTEQKEKYLPRLAQ 139
GT EQK+++LP +
Sbjct: 112 GTEEQKKRWLPGMLS 126
Score = 85.3 bits (212), Expect = 1e-19
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
LL + P+E+GG G + + ++EEIA SV++ V + ++L + ++ GT EQK++
Sbjct: 61 LLSLPQPEEWGGGGQPYEVYLQVLEEIAARWASVAVAVSV-HSLSSHPLLVFGTEEQKKR 119
Query: 64 YLPRLAQTDLMG 75
+LP + + +G
Sbjct: 120 WLPGMLSGEQIG 131
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA
dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A
{Podospora anserina}
Length = 438
Score = 87.7 bits (218), Expect = 2e-20
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 65 LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
++ +I +GG G + + ++VEE V+PS ++ + L I L
Sbjct: 51 YAAAVSAGILKGQISPAHGGTGGTLIESAILVEECYSVEPSAALTIFA-TGLGLTPIN-L 108
Query: 125 GTTEQKEKYLPRLA 138
Q ++L
Sbjct: 109 AAGPQHAEFLAPFL 122
Score = 83.1 bits (206), Expect = 7e-19
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
+L +I +GG G + + ++VEE V+PS ++ + L I L Q +
Sbjct: 59 ILKGQISPAHGGTGGTLIESAILVEECYSVEPSAALTIFA-TGLGLTPIN-LAAGPQHAE 116
Query: 64 YLPRLA 69
+L
Sbjct: 117 FLAPFL 122
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA
dehydrogenase, flavoprotein, isovaleric acidemia; HET:
FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Length = 394
Score = 86.8 bits (216), Expect = 3e-20
Identities = 24/75 (32%), Positives = 43/75 (57%)
Query: 65 LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
+L ++G+ P +YGG GL ++ +L++EEI+R +V + + L + +++
Sbjct: 52 WKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRN 111
Query: 125 GTTEQKEKYLPRLAQ 139
G QKEKYLP+L
Sbjct: 112 GNEAQKEKYLPKLIS 126
Score = 84.9 bits (211), Expect = 1e-19
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
+LG+ P +YGG GL ++ +L++EEI+R +V + + L + +++ G QKEK
Sbjct: 60 VLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEK 119
Query: 64 YLPRLAQTDLMG 75
YLP+L + +G
Sbjct: 120 YLPKLISGEYIG 131
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin,
peroxisome, glyoxysome, fatty acid metabo lipid
metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A
{Arabidopsis thaliana} PDB: 2ix6_A*
Length = 436
Score = 86.5 bits (215), Expect = 3e-20
Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 65 LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
P+L + G I YG PGLS + + EIARVD S S + + ++L I
Sbjct: 92 TPKLGAMGVAGGSIK-GYGCPGLSITANAIATAEIARVDASCSTFILVHSSLGMLTIALC 150
Query: 125 GTTEQKEKYLPRLAQ 139
G+ QKEKYLP LAQ
Sbjct: 151 GSEAQKEKYLPSLAQ 165
Score = 83.5 bits (207), Expect = 6e-19
Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
+ G I YG PGLS + + EIARVD S S + + ++L I G+ QKEK
Sbjct: 100 VAGGSIK-GYGCPGLSITANAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEK 158
Query: 64 YLPRLAQTDLMG 75
YLP LAQ + +
Sbjct: 159 YLPSLAQLNTVA 170
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na
project on protein structural and functional analyses;
HET: FAD; 2.30A {Thermus thermophilus}
Length = 577
Score = 86.6 bits (215), Expect = 5e-20
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 59 EQKEKYLPR-----LAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQ 113
E E L + L+ +++P+EYGG L + ++ EE++ S+
Sbjct: 55 EHGELELNVPLMRKAGELGLLAIDVPEEYGGLDLPKVISTVVAEELSG-SGGFSVTYGAH 113
Query: 114 NTLVNDLIIKLGTTEQKEKYLPRLA 138
++ ++ GT EQK KYLP+LA
Sbjct: 114 TSIGTLPLVYFGTEEQKRKYLPKLA 138
Score = 82.8 bits (205), Expect = 1e-18
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
LL +++P+EYGG L + ++ EE++ S+ ++ ++ GT EQK K
Sbjct: 74 LLAIDVPEEYGGLDLPKVISTVVAEELSG-SGGFSVTYGAHTSIGTLPLVYFGTEEQKRK 132
Query: 64 YLPRLAQTDLMG 75
YLP+LA + +
Sbjct: 133 YLPKLASGEWIA 144
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase,
mycobacerium smegmatis, S genomics; HET: FDA; 1.45A
{Mycobacterium smegmatis}
Length = 399
Score = 85.3 bits (212), Expect = 8e-20
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 65 LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
++G+ + YG G + ++ L E+ D V +Q +L I +
Sbjct: 63 AKEFGNLGVLGMHLQ-GYGCAGTNAVSYGLACMELEAGDSGFRSFVSVQGSLSMFSIYRY 121
Query: 125 GTTEQKEKYLPRLAQ 139
G+ EQK ++LPRLA
Sbjct: 122 GSEEQKNEWLPRLAA 136
Score = 82.6 bits (205), Expect = 7e-19
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
+LG+ + YG G + ++ L E+ D V +Q +L I + G+ EQK +
Sbjct: 71 VLGMHLQ-GYGCAGTNAVSYGLACMELEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQKNE 129
Query: 64 YLPRLAQTDLMG 75
+LPRLA D +G
Sbjct: 130 WLPRLAAGDAIG 141
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET:
FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*
Length = 397
Score = 85.3 bits (212), Expect = 8e-20
Identities = 20/77 (25%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 65 LPRLAQTDLMGVEIPQEYGGPGL--SFMTDILIVEEIARVDPSVSILVDIQNTLVNDLII 122
+ + + G IP+EYGG G+ ++ +++ EEIAR ++ + ++++ I+
Sbjct: 43 VRPMGELGFFGTVIPEEYGGEGMDQGWLAAMIVTEEIARGSSALRVQLNMEVLGCAYTIL 102
Query: 123 KLGTTEQKEKYLPRLAQ 139
G+ K+KY+P+L+
Sbjct: 103 TYGSEALKKKYVPKLSS 119
Score = 82.6 bits (205), Expect = 9e-19
Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 4 LLGVEIPQEYGGPGL--SFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQK 61
G IP+EYGG G+ ++ +++ EEIAR ++ + ++++ I+ G+ K
Sbjct: 51 FFGTVIPEEYGGEGMDQGWLAAMIVTEEIARGSSALRVQLNMEVLGCAYTILTYGSEALK 110
Query: 62 EKYLPRLAQTDLMG 75
+KY+P+L+ + +G
Sbjct: 111 KKYVPKLSSAEFLG 124
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; HET: FDA; 1.70A
{Mycobacterium smegmatis}
Length = 403
Score = 85.3 bits (212), Expect = 9e-20
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 65 LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
L + L+G+ + YG G+S + L E+ D + LV +Q +L I
Sbjct: 68 AVELGELGLLGMHLK-GYGCAGMSAVAYGLACLELEAGDSGIRSLVSVQGSLAMYAIHAF 126
Query: 125 GTTEQKEKYLPRLAQ 139
G+ EQK+++LP +A
Sbjct: 127 GSDEQKDQWLPDMAS 141
Score = 82.6 bits (205), Expect = 9e-19
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
LLG+ + YG G+S + L E+ D + LV +Q +L I G+ EQK++
Sbjct: 76 LLGMHLK-GYGCAGMSAVAYGLACLELEAGDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQ 134
Query: 64 YLPRLAQTDLMG 75
+LP +A +G
Sbjct: 135 WLPDMASGHRIG 146
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-structure,
beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus
anthracis}
Length = 597
Score = 85.5 bits (212), Expect = 1e-19
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 59 EQKEKYLPR-----LAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQ 113
EQ E + L+G ++P+EYGG GL ++ LI E+ +R +I
Sbjct: 60 EQHEFDRSVRLLKEAGELGLLGADVPEEYGGIGLDKVSSALIAEKFSRAG-GFAITHGAH 118
Query: 114 NTLVNDLIIKLGTTEQKEKYLPRLA 138
+ + I+ G EQK+KYLP LA
Sbjct: 119 VGIGSLPIVLFGNEEQKKKYLPLLA 143
Score = 82.4 bits (204), Expect = 2e-18
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
LLG ++P+EYGG GL ++ LI E+ +R +I + + I+ G EQK+K
Sbjct: 79 LLGADVPEEYGGIGLDKVSSALIAEKFSRAG-GFAITHGAHVGIGSLPIVLFGNEEQKKK 137
Query: 64 YLPRLAQTDLMG 75
YLP LA + +
Sbjct: 138 YLPLLATGEKLA 149
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase,
decarboxylation, flavin protein, oxidoreductase; HET:
FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB:
2r0n_A* 1sir_A* 2r0m_A*
Length = 392
Score = 82.2 bits (204), Expect = 1e-18
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 65 LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
+ + + ++G I YG G+S + L+ E+ RVD + +Q++LV I
Sbjct: 51 ISEMGELGVLGPTIK-GYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAY 109
Query: 125 GTTEQKEKYLPRLAQ 139
G+ EQ++KYLP+LA+
Sbjct: 110 GSEEQRQKYLPQLAK 124
Score = 79.6 bits (197), Expect = 1e-17
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
+LG I YG G+S + L+ E+ RVD + +Q++LV I G+ EQ++K
Sbjct: 59 VLGPTIK-GYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQK 117
Query: 64 YLPRLAQTDLMG 75
YLP+LA+ +L+G
Sbjct: 118 YLPQLAKGELLG 129
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA
structural genomics, PSI, protein structure initiative;
HET: FAD; 1.80A {Geobacillus kaustophilus}
Length = 385
Score = 80.6 bits (200), Expect = 3e-18
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
L + ++YGG F ++I EE+ +V S + + + N +V I GT EQK+K
Sbjct: 55 FLCPWVDEKYGGLNADFAYSVVINEELEKVGSS-LVGIGLHNDIVTPYIASYGTEEQKQK 113
Query: 64 YLPRLAQTDLMG 75
+LP+ +L+
Sbjct: 114 WLPKCVTGELIT 125
Score = 79.5 bits (197), Expect = 9e-18
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 61 KEKYLPR-----LAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNT 115
K +PR + + + + ++YGG F ++I EE+ +V S + + + N
Sbjct: 38 KRGIIPRSFWAKMGENGFLCPWVDEKYGGLNADFAYSVVINEELEKVGSS-LVGIGLHND 96
Query: 116 LVNDLIIKLGTTEQKEKYLPRLA 138
+V I GT EQK+K+LP+
Sbjct: 97 IVTPYIASYGTEEQKQKWLPKCV 119
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
oxidoreductase; HET: FAO; 1.70A {Mycobacterium
smegmatis} PDB: 3oib_A*
Length = 403
Score = 80.3 bits (199), Expect = 6e-18
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVS-ILVDIQNTLVNDLIIKLGTTEQKE 62
LLG P++ GG G ++I EE+ + +I G +
Sbjct: 71 LLGAGFPEDAGGSGGDGADPVVICEEMHYAGSPGGVYASLFTCGIAVPHMIASGDQRLID 130
Query: 63 KYLPRLAQTDLMG 75
Y+ + + +G
Sbjct: 131 TYVRPTLRGEKIG 143
Score = 79.9 bits (198), Expect = 7e-18
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 6/84 (7%)
Query: 61 KEKYLPR-----LAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVS-ILVDIQN 114
+ +PR A+ L+G P++ GG G ++I EE+
Sbjct: 54 RAGEIPRELHRKAAELGLLGAGFPEDAGGSGGDGADPVVICEEMHYAGSPGGVYASLFTC 113
Query: 115 TLVNDLIIKLGTTEQKEKYLPRLA 138
+ +I G + Y+
Sbjct: 114 GIAVPHMIASGDQRLIDTYVRPTL 137
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
oxidoreductase; HET: FDA; 2.50A {Mycobacterium
abscessus}
Length = 403
Score = 79.1 bits (196), Expect = 2e-17
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDI-QNTLVNDLIIKLGTTEQKE 62
LLG+ P+E GG G + + L+ E I S + + + + I G+ E
Sbjct: 74 LLGIGFPEEVGGSGGNAIDSALVTEAILAAGGSTGVCAALFTHGIALPHIAANGSDALIE 133
Query: 63 KYLPRLAQTDLMG 75
+Y+ ++G
Sbjct: 134 RYVRPTLAGKMIG 146
Score = 78.7 bits (195), Expect = 2e-17
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
Query: 61 KEKYLPR-----LAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDI-QN 114
+PR A+ L+G+ P+E GG G + + L+ E I S + + +
Sbjct: 57 HVGEIPRDLHLNAAEVGLLGIGFPEEVGGSGGNAIDSALVTEAILAAGGSTGVCAALFTH 116
Query: 115 TLVNDLIIKLGTTEQKEKYLPRLA 138
+ I G+ E+Y+
Sbjct: 117 GIALPHIAANGSDALIERYVRPTL 140
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase
family, kijanose, kijani FAD, flavoprotein; HET: TYD;
2.05A {Actinomadura kijaniata}
Length = 439
Score = 77.3 bits (191), Expect = 7e-17
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 65 LPRLAQTDLMGVEIPQEYGGPGLSFMTD-ILIVEEIARVDPSVSILVDIQNTLVNDLIIK 123
L + LMG +P E GG G+ + D + + +AR D S ++ + +Q + L +
Sbjct: 56 FDALRKDGLMGATVPAELGGLGVDRLYDVAVALLAVARADASTALALHMQLSRGLTLGYE 115
Query: 124 LGTTEQKEKYLPRLA 138
+++ + L
Sbjct: 116 WRHGDERARTLAERI 130
Score = 76.2 bits (188), Expect = 2e-16
Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 4 LLGVEIPQEYGGPGLSFMTD-ILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKE 62
L+G +P E GG G+ + D + + +AR D S ++ + +Q + L + +++
Sbjct: 64 LMGATVPAELGGLGVDRLYDVAVALLAVARADASTALALHMQLSRGLTLGYEWRHGDERA 123
Query: 63 KYLPRLAQTDLMG 75
+ L ++
Sbjct: 124 RTLAERILRGMVA 136
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas
oxidoreductase; 3.15A {Micromonospora carbonacea}
Length = 395
Score = 76.9 bits (190), Expect = 8e-17
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 65 LPRLAQTDLMGVEIPQEYGGPGLSFMTD-ILIVEEIARVDPSVSILVDIQNT--LVNDLI 121
+ A+ LMG +P E GG GL+ + D + +A D S ++ +Q + L
Sbjct: 45 FEQFAKLGLMGATVPAELGGLGLTRLYDVATALMRLAEADASTALAWHVQLSRGLTLTYE 104
Query: 122 IKLGTT---EQKEKYLPRLAQ 139
+ GT E+ L +A+
Sbjct: 105 WQHGTPPVRAMAERLLRAMAE 125
Score = 73.4 bits (181), Expect = 1e-15
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 4 LLGVEIPQEYGGPGLSFMTD-ILIVEEIARVDPSVSILVDIQNT--LVNDLIIKLGTT-- 58
L+G +P E GG GL+ + D + +A D S ++ +Q + L + GT
Sbjct: 53 LMGATVPAELGGLGLTRLYDVATALMRLAEADASTALAWHVQLSRGLTLTYEWQHGTPPV 112
Query: 59 -EQKEKYLPRLAQTDLMG 75
E+ L +A+ +
Sbjct: 113 RAMAERLLRAMAEGEAAV 130
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme
hydroxylase, oxidoreductase; 2.3A {Acinetobacter
baumannii} PDB: 2jbs_A* 2jbt_A*
Length = 422
Score = 54.4 bits (131), Expect = 4e-09
Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
Query: 67 RLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGT 126
L + L P+ YGG +S + +A + + T + I
Sbjct: 71 LLKEIGLHRAFQPKVYGGLEMSLPDFANCIVTLAGACAGTAWAFSLLCTHSH-QIAMFSK 129
Query: 127 TEQKEKYLP 135
Q E +L
Sbjct: 130 QLQDEIWLK 138
Score = 51.3 bits (123), Expect = 6e-08
Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
L P+ YGG +S + +A + + T + I Q E
Sbjct: 77 LHRAFQPKVYGGLEMSLPDFANCIVTLAGACAGTAWAFSLLCTHSH-QIAMFSKQLQDEI 135
Query: 64 YLP 66
+L
Sbjct: 136 WLK 138
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural
genomics protein structure initiative, midwest center
for structural genomics, MCSG; HET: 1PS; 1.65A
{Rhodococcus SP} PDB: 3aff_A 3afe_A
Length = 394
Score = 49.7 bits (119), Expect = 2e-07
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 67 RLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGT 126
L +T + P+++GG + V +IA S + I + N +
Sbjct: 43 ALQETGFFRLLQPEQWGGYQADPVLFYSAVRKIASACGSTGWVSSIIG-VHNWHLALFSQ 101
Query: 127 TEQKEKY 133
Q++ +
Sbjct: 102 QAQEDVW 108
Score = 47.7 bits (114), Expect = 9e-07
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
+ P+++GG + V +IA S + I + N + Q++
Sbjct: 49 FFRLLQPEQWGGYQADPVLFYSAVRKIASACGSTGWVSSIIG-VHNWHLALFSQQAQEDV 107
Query: 64 Y 64
+
Sbjct: 108 W 108
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics,
PSI-2, protein structure initiative, midwest CENT
structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus
SP}
Length = 414
Score = 47.1 bits (112), Expect = 1e-06
Identities = 8/40 (20%), Positives = 16/40 (40%)
Query: 67 RLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSV 106
L + + + P+ YGG + V +A +D +
Sbjct: 56 LLRDSGAIRLLQPRLYGGYEVHPREFAETVMGVAALDGAS 95
Score = 45.1 bits (107), Expect = 5e-06
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSV 37
+ + P+ YGG + V +A +D +
Sbjct: 62 AIRLLQPRLYGGYEVHPREFAETVMGVAALDGAS 95
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 7e-06
Identities = 42/236 (17%), Positives = 77/236 (32%), Gaps = 83/236 (35%)
Query: 18 LSFMTDILIVEEIARVDPSVSILV-----------DIQNTLVNDLIIKLGTTEQKEKYLP 66
L +++ ++ ++ + D +++ + DI + L L+ + TT K K L
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI-HALAAKLLQENDTTLVKTKELI 123
Query: 67 R--LAQTDLMGVEIPQE-------------------YGGPGLS---FMTDILIVEEIARV 102
+ + + ++ +GG G + F EE
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF-------EE---- 172
Query: 103 DPSVSILVDIQNT---LVNDLIIKLGTTEQKEKYLPRLAQTDVSRT---SRGYKALEWHA 156
L D+ T LV DLI T L L +T + ++G LEW
Sbjct: 173 ------LRDLYQTYHVLVGDLIKFSAET------LSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 157 FYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSCGLSLQILQFQNLSSDMHMTGL 212
+ P D+L I +SC L + ++Q + + G
Sbjct: 221 ---NPSNTPDKDYLLSIP--------------ISCPL-IGVIQLAHYVVTAKLLGF 258
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle,
oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus}
SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
Length = 661
Score = 43.7 bits (103), Expect = 2e-05
Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 10/99 (10%)
Query: 7 VEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLP 66
V+ +EYG I+ V +D+ + ++ T EQ+E++
Sbjct: 71 VKKMREYGISD-----PEEIMWFKNSVHRGHPEPLDLHLGMFLPTLLHQATAEQQERFFM 125
Query: 67 RLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPS 105
++ G Y + T + +E A DP
Sbjct: 126 PAWNLEITGT-----YAQTEMGHGTHLRGLETTATYDPK 159
Score = 41.0 bits (96), Expect = 2e-04
Identities = 13/83 (15%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 60 QKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVND 119
+ ++Y + ++ M V+ +EYG I+ V +D+ +
Sbjct: 56 RSQRYEVAVKKSATM-VKKMREYGISD-----PEEIMWFKNSVHRGHPEPLDLHLGMFLP 109
Query: 120 LIIKLGTTEQKEKYLPRLAQTDV 142
++ T EQ+E++ ++
Sbjct: 110 TLLHQATAEQQERFFMPAWNLEI 132
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD
cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP:
a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*
Length = 659
Score = 36.1 bits (83), Expect = 0.007
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 36 SVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILI 95
VD+ + I GT EQ++K+L + ++G Y L +++
Sbjct: 94 DQPAYVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGC-----YAQTELGHGSNVQG 148
Query: 96 VEEIARVDPS 105
+E A +DP
Sbjct: 149 LETTATLDPK 158
Score = 33.0 bits (75), Expect = 0.066
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 105 SVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDV 142
VD+ + I GT EQ++K+L + +
Sbjct: 94 DQPAYVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQI 131
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.016
Identities = 28/187 (14%), Positives = 58/187 (31%), Gaps = 46/187 (24%)
Query: 8 EIPQE--YGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYL 65
++P+E P + I + +A D + D T++ + L E ++ +
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 66 PRLA--QTDLMGVEIPQEYGGPGLSFMTDILIV--EEIARVDPSVSILVDIQNTLVNDLI 121
RL+ IP T +L + ++ + D + N L +
Sbjct: 377 -RLSVFPPS---AHIP-----------TILLSLIWFDVIKSDVM-----VVVNKLHKYSL 416
Query: 122 IKLGTTEQKEKYLPRLAQTDVSRTSRGYKALEWHA----FYGRTDSLPLND--------- 168
++ E +P + ++ AL H Y + +D
Sbjct: 417 VEKQPKEST-ISIPSI-YLELKVKLENEYAL--HRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 169 ---HLSH 172
H+ H
Sbjct: 473 FYSHIGH 479
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein,
oxidoreducta; HET: FAD; 2.80A {Homo sapiens}
Length = 428
Score = 28.8 bits (65), Expect = 1.2
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 14 GGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVND-----LIIKLGTTEQKEKYLPRL 68
GLS + LI EE + + + N D ++ G+ EQK+++L L
Sbjct: 88 AVSGLSHVDYALIAEETGKCFFAPDVF----NCQAPDTGNMEVLHLYGSEEQKKQWLEPL 143
Query: 69 AQ 70
Q
Sbjct: 144 LQ 145
Score = 28.8 bits (65), Expect = 1.2
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 83 GGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVND-----LIIKLGTTEQKEKYLPRL 137
GLS + LI EE + + + N D ++ G+ EQK+++L L
Sbjct: 88 AVSGLSHVDYALIAEETGKCFFAPDVF----NCQAPDTGNMEVLHLYGSEEQKKQWLEPL 143
Query: 138 AQ 139
Q
Sbjct: 144 LQ 145
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase,
ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus
horikoshii}
Length = 348
Score = 27.2 bits (60), Expect = 4.9
Identities = 9/66 (13%), Positives = 24/66 (36%), Gaps = 19/66 (28%)
Query: 47 LVNDLI-IKLGTTEQKEKYLPRL-----AQTDLMGVEIPQEYGGPGLSFMTDIL----IV 96
+ L ++L + ++ L ++ ++ P +F DI+ I+
Sbjct: 289 YIRKLSGLEL-NDGEIKELLEKMMYEVEISRGRAKLKYP--------AFRDDIMHARDIL 339
Query: 97 EEIARV 102
E++
Sbjct: 340 EDVLIA 345
>3mol_A Heme acquisition protein hasap; hemophore, heme transport, H32A
mutation, holo protein, heme protein, transport protein;
HET: HEM; 1.20A {Pseudomonas aeruginosa} PDB: 3mom_A*
3mok_A 3ell_A
Length = 184
Score = 26.2 bits (57), Expect = 6.8
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 155 HAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVS-CGLSLQILQFQNLSSDMH 208
H +G+ DS+ L D L+ +S L VS L L Q +H
Sbjct: 83 HTLWGKLDSIALGDTLTGGAS---SGGYALDSQEVSFSNLGLDSPIAQGRDGTVH 134
>1dk0_A HASA, heme-binding protein A; protein-heme complex, two heme
insertions, transport protein; HET: HEM; 1.77A {Serratia
marcescens} SCOP: d.35.1.1 PDB: 1b2v_A* 1dkh_A* 3csl_C*
3csn_C 3ddr_C* 2uyd_X* 1ybj_A 2cn4_A*
Length = 188
Score = 26.3 bits (57), Expect = 7.2
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 155 HAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVS-CGLSLQILQFQNLSSDMH 208
H YG+ DSL D LS + ++ VS GL+L LQ Q +H
Sbjct: 83 HTLYGQLDSLSFGDGLSGGDTS----PYSIQVPDVSFGGLNLSSLQAQGHDGVVH 133
>3igz_B Cofactor-independent phosphoglycerate mutase; glycolysis, cobalt,
isomerase; HET: 3PG 2PG; 1.90A {Leishmania mexicana}
PDB: 3igy_B* 3nvl_A
Length = 561
Score = 26.4 bits (59), Expect = 7.8
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 7/30 (23%)
Query: 72 DLMGVEIPQEYGGPGLSFMTDILIVEEIAR 101
+L+G E P++Y ++ VE++
Sbjct: 534 NLLGFEAPEDYEP-------SLIYVEKLEH 556
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.395
Gapped
Lambda K H
0.267 0.0794 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,291,152
Number of extensions: 194107
Number of successful extensions: 474
Number of sequences better than 10.0: 1
Number of HSP's gapped: 437
Number of HSP's successfully gapped: 79
Length of query: 216
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 126
Effective length of database: 4,188,903
Effective search space: 527801778
Effective search space used: 527801778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.8 bits)