RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5139
(216 letters)
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains
{Human (Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 39.8 bits (92), Expect = 1e-04
Identities = 24/83 (28%), Positives = 46/83 (55%)
Query: 56 GTTEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNT 115
+ ++ +L ++G+ P +YGG GL ++ +L++EEI+R +V + +
Sbjct: 38 NEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSN 97
Query: 116 LVNDLIIKLGTTEQKEKYLPRLA 138
L + +++ G QKEKYLP+L
Sbjct: 98 LCINQLVRNGNEAQKEKYLPKLI 120
Score = 39.4 bits (91), Expect = 1e-04
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 16 PGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLMG 75
GL ++ +L++EEI+R +V + + L + +++ G QKEKYLP+L + +G
Sbjct: 67 SGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIG 126
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains
1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 267
Score = 33.6 bits (76), Expect = 0.013
Identities = 21/165 (12%), Positives = 49/165 (29%), Gaps = 21/165 (12%)
Query: 67 RLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGT 126
R + ++ G+S +I+ V +D+ + ++ T
Sbjct: 59 RYEVAVKKSATMVKKMREYGISDPEEIM--WFKNSVHRGHPEPLDLHLGMFLPTLLHQAT 116
Query: 127 TEQKEKYLPRL---------AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGC 177
EQ+E++ AQT++ + + +T LN
Sbjct: 117 AEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKWW 176
Query: 178 VGFDGQLKRWMV----------SCGLSLQILQFQNLSSDMHMTGL 212
G G+ + GL ++ + + + + G+
Sbjct: 177 PGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGI 221
Score = 33.2 bits (75), Expect = 0.017
Identities = 12/80 (15%), Positives = 28/80 (35%), Gaps = 2/80 (2%)
Query: 6 GVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYL 65
+ ++ G+S +I+ V +D+ + ++ T EQ+E++
Sbjct: 67 SATMVKKMREYGISDPEEIM--WFKNSVHRGHPEPLDLHLGMFLPTLLHQATAEQQERFF 124
Query: 66 PRLAQTDLMGVEIPQEYGGP 85
++ G E G
Sbjct: 125 MPAWNLEITGTYAQTEMGHG 144
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and
2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 271
Score = 32.4 bits (73), Expect = 0.029
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 41 VDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLMG 75
VD+ + I GT EQ++K+L + ++G
Sbjct: 98 VDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIG 132
Score = 30.9 bits (69), Expect = 0.093
Identities = 12/72 (16%), Positives = 21/72 (29%), Gaps = 5/72 (6%)
Query: 67 RLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGT 126
T + L+ + I + VD+ + I GT
Sbjct: 60 LFKSTLRKCAHAFKRIIELRLNEEEAGRLRHFIDQPAY-----VDLHWGMFVPAIKGQGT 114
Query: 127 TEQKEKYLPRLA 138
EQ++K+L
Sbjct: 115 EEQQKKWLSLAN 126
>d1dk0a_ d.35.1.1 (A:) Heme-binding protein A (HasA) {Serratia
marcescens [TaxId: 615]}
Length = 173
Score = 28.2 bits (63), Expect = 0.46
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 155 HAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVS-CGLSLQILQFQNLSSDMH 208
H YG+ DSL D L SG ++ VS GL+L LQ Q +H
Sbjct: 82 HTLYGQLDSLSFGDGL----SGGDTSPYSIQVPDVSFGGLNLSSLQAQGHDGVVH 132
>d1v7za_ c.125.1.1 (A:) Creatininase {Pseudomonas putida [TaxId:
303]}
Length = 257
Score = 26.3 bits (57), Expect = 2.5
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 12 EYGGPGLSFMTDILIVEEIAR 32
E G + D+L+ + +
Sbjct: 32 EQHGHHMCMNVDVLLPTAVCK 52
Score = 26.3 bits (57), Expect = 2.5
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 81 EYGGPGLSFMTDILIVEEIAR 101
E G + D+L+ + +
Sbjct: 32 EQHGHHMCMNVDVLLPTAVCK 52
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 26.3 bits (57), Expect = 3.4
Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 20/103 (19%)
Query: 28 EEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLMGVEIPQEYGGPG- 86
EI R++ L +I++ D K K+KY+ +L L+G +I ++G
Sbjct: 20 AEIKRIN---KELANIRSKFKGD---KALDGYSKKKYVCKLLFIFLLGHDI--DFGHMEA 71
Query: 87 LSFM--TDI-------LIVEEIARVDPSVSILVDIQNTLVNDL 120
++ + L + + + + L+ N + NDL
Sbjct: 72 VNLLSSNRYTEKQIGYLFISVLVNSNSELIRLI--NNAIKNDL 112
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.138 0.395
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 784,548
Number of extensions: 34761
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 11
Length of query: 216
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 134
Effective length of database: 1,281,736
Effective search space: 171752624
Effective search space used: 171752624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.0 bits)