BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5140
(120 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|B Chain B, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|C Chain C, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|D Chain D, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
Length = 404
Score = 88.6 bits (218), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 63/93 (67%), Gaps = 1/93 (1%)
Query: 15 IIAKLAKETIAPYVQKMESEEKIDETVLKTLFESGAGSFALSEPGSGSDAFAMKTTATKD 74
+ ++ I ++K +EE+ T L L GSF LSE G+GSD+FA+KT A K+
Sbjct: 109 VFCEIQNTLINTLIRKHGTEEQ-KATYLPQLTTEKVGSFCLSEAGAGSDSFALKTRADKE 167
Query: 75 GNHYILNGSKMWISNADIANIFLVMANVDVSKG 107
G++Y+LNGSKMWIS+A+ A +FLVMANVD + G
Sbjct: 168 GDYYVLNGSKMWISSAEHAGLFLVMANVDPTIG 200
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 16 IAKLAKETIAPYVQKMESEEKIDETVLKTLFESG 49
+ K A+E IAP V M+ K++++V++ LF+ G
Sbjct: 40 VKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQG 73
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
pdb|1UKW|B Chain B, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
Length = 379
Score = 72.8 bits (177), Expect = 5e-14, Method: Composition-based stats.
Identities = 44/103 (42%), Positives = 62/103 (60%), Gaps = 6/103 (5%)
Query: 2 DMAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESGA-GSFALSEPGS 60
++AY +G + + + L I P + E+K E L+ L E A +FALSEPG+
Sbjct: 75 ELAYACMGIYTIPMASDLG---ITPVLLAGTEEQK--ERFLRPLTEKPALAAFALSEPGN 129
Query: 61 GSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVD 103
GSDA A+KT A + G+HY+LNG+KMWISN A +V A V+
Sbjct: 130 GSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAEWVVVFATVN 172
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase
pdb|2Z1Q|B Chain B, Crystal Structure Of Acyl Coa Dehydrogenase
Length = 577
Score = 69.7 bits (169), Expect = 4e-13, Method: Composition-based stats.
Identities = 34/55 (61%), Positives = 40/55 (72%), Gaps = 2/55 (3%)
Query: 51 GSFALSEPGSGSDAFAMKTTAT--KDGNHYILNGSKMWISNADIANIFLVMANVD 103
++ L+EPGSGSDA A KT AT +DG HYILNG K WISNA A++F V A VD
Sbjct: 144 AAYCLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNAGFAHLFTVFAKVD 198
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|B Chain B, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|C Chain C, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|D Chain D, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
Length = 394
Score = 68.9 bits (167), Expect = 6e-13, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 45/67 (67%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGKVT 110
G+ A+SEP +GSD +MK A K GNHYILNG+K WI+N A++ +V A D++ +
Sbjct: 131 GALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPAS 190
Query: 111 KGLFSSI 117
+G+ + I
Sbjct: 191 RGITAFI 197
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
Length = 597
Score = 65.1 bits (157), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/55 (52%), Positives = 40/55 (72%), Gaps = 2/55 (3%)
Query: 51 GSFALSEPGSGSDAFAMKTTA--TKDGNHYILNGSKMWISNADIANIFLVMANVD 103
++AL+EPGSGSDA KTTA +G HY+LNG K WI+N+ A++F+V A +D
Sbjct: 149 AAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWITNSAFADVFIVYAKID 203
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|B Chain B, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|C Chain C, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|D Chain D, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|E Chain E, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|F Chain F, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|G Chain G, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|H Chain H, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
Length = 391
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 44 TLFESG--AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMAN 101
T F SG G FALSEPG+GSDA A TTA +G+ ++LNG+K WI+NA A+ +V A+
Sbjct: 113 TPFTSGDKIGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFAS 172
Query: 102 VDVS-KGKVTKGLFSSIPT 119
D + + K +PT
Sbjct: 173 TDRALQNKSISAFLVPMPT 191
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
pdb|1JQI|B Chain B, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
Length = 388
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 42/56 (75%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSK 106
G FALSEPG+GSDA A TTA ++G+ ++LNG+K WI+N+ A+ +V A+ D S+
Sbjct: 126 GCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWEASATVVFASTDRSR 181
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|C Chain C, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPJ|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|E Chain E, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|F Chain F, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|G Chain G, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Length = 397
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGKVT 110
G F ++EP +GSD AM +TA G+H++LNGSK WISNA A++ + A D + G +
Sbjct: 124 GGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAAQADVLIYYAYTDKAAG--S 181
Query: 111 KGL 113
+GL
Sbjct: 182 RGL 184
>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|B Chain B, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|C Chain C, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|D Chain D, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND
Length = 393
Score = 62.0 bits (149), Expect = 8e-11, Method: Composition-based stats.
Identities = 28/49 (57%), Positives = 39/49 (79%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVM 99
S+ L+EPGSGSDA ++ T+A K G+HYILNGSK +IS A ++I++VM
Sbjct: 134 ASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDIYVVM 182
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|B Chain B, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|C Chain C, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|D Chain D, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
Length = 399
Score = 61.2 bits (147), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 47/76 (61%)
Query: 28 VQKMESEEKIDETVLKTLFESGAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWI 87
+ + SEE+ +E + + G F L+EP GS+ M+T A +DG+ +ILNG+KMWI
Sbjct: 118 IYRYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMWI 177
Query: 88 SNADIANIFLVMANVD 103
+N ++A++ V A D
Sbjct: 178 TNGNLADVATVWAQTD 193
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|B Chain B, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|C Chain C, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|D Chain D, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
Length = 393
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 63/118 (53%), Gaps = 15/118 (12%)
Query: 5 YKGLGRDRLN---IIAKLAK----ETIAPYVQKM-------ESEEKIDETVLKTLFESGA 50
Y G G D + +I ++A+ ++ P V K+ E++ + VL + A
Sbjct: 73 YGGQGADSVATCIVIEEVARVDCSASLIPAVNKLGTMGLILRGSEELKKQVLPAVASGEA 132
Query: 51 -GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKG 107
S+ALSE +GSDA +M+T A DG+ +ILNGSK WI+N + + VMA D KG
Sbjct: 133 MASYALSEREAGSDAASMRTRAVADGDDWILNGSKCWITNGGKSTWYTVMAVTDPDKG 190
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain
Specificity: Crystal Structure Of Human Very-Long-Chain
Acyl-Coa Dehydrogenase
Length = 587
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Query: 52 SFALSEPGSGSDAFAMKTTATKD--GNHYILNGSKMWISNADIANIFLVMANVDVS 105
+F L+EP SGSDA +++T+A G +Y LNGSK+WISN +A+IF V A V+
Sbjct: 145 AFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVT 200
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa
Dehydrogenase (acadvl)
Length = 607
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Query: 52 SFALSEPGSGSDAFAMKTTATKD--GNHYILNGSKMWISNADIANIFLVMANVDVS 105
+F L+EP SGSDA +++T+A G +Y LNGSK+WISN +A+IF V A V+
Sbjct: 165 AFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVT 220
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
pdb|2PG0|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
Length = 385
Score = 59.7 bits (143), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 50/85 (58%)
Query: 19 LAKETIAPYVQKMESEEKIDETVLKTLFESGAGSFALSEPGSGSDAFAMKTTATKDGNHY 78
L + + PY+ +EE+ + + K + + A++EPG+GSD + TTA KDG++Y
Sbjct: 93 LHNDIVTPYIASYGTEEQKQKWLPKCVTGELITAIAMTEPGAGSDLANISTTAVKDGDYY 152
Query: 79 ILNGSKMWISNADIANIFLVMANVD 103
I+NG K +I+N A++ +V D
Sbjct: 153 IVNGQKTFITNGIHADLIVVACKTD 177
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis
Length = 403
Score = 59.3 bits (142), Expect = 6e-10, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 28 VQKMESEEKIDETVLKTLFESGAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWI 87
+ S+E+ D+ + G F L+EP GSD M+T AT+ G+ +IL G+KMWI
Sbjct: 123 IHAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILTGTKMWI 182
Query: 88 SNADIANIFLVMANVD 103
+N +A++ +V A D
Sbjct: 183 TNGSVADVAVVWARTD 198
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|B Chain B, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|C Chain C, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|D Chain D, Structure Of The Human Mcad:etf E165betaa Complex
Length = 421
Score = 58.5 bits (140), Expect = 9e-10, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 36/52 (69%)
Query: 52 SFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVD 103
++ ++EPG+GSD +KT A K G+ YI+NG KMWI+N AN + ++A D
Sbjct: 157 AYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSD 208
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|B Chain B, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|C Chain C, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|D Chain D, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
Length = 396
Score = 58.5 bits (140), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 36/52 (69%)
Query: 52 SFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVD 103
++ ++EPG+GSD +KT A K G+ YI+NG KMWI+N AN + ++A D
Sbjct: 132 AYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSD 183
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDD|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
Length = 385
Score = 58.2 bits (139), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 36/52 (69%)
Query: 52 SFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVD 103
++ ++EPG+GSD +KT A K G+ YI+NG KMWI+N AN + ++A D
Sbjct: 122 AYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSD 173
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGC|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
Length = 396
Score = 58.2 bits (139), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 36/52 (69%)
Query: 52 SFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVD 103
++ ++EPG+GSD +KT A K G+ YI+NG KMWI+N AN + ++A D
Sbjct: 132 AYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSD 183
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1T9G|A Chain A, Structure Of The Human Mcad:etf Complex
pdb|1T9G|B Chain B, Structure Of The Human Mcad:etf Complex
pdb|1T9G|C Chain C, Structure Of The Human Mcad:etf Complex
pdb|1T9G|D Chain D, Structure Of The Human Mcad:etf Complex
Length = 396
Score = 58.2 bits (139), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 36/52 (69%)
Query: 52 SFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVD 103
++ ++EPG+GSD +KT A K G+ YI+NG KMWI+N AN + ++A D
Sbjct: 132 AYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSD 183
>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|C Chain C, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|D Chain D, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|E Chain E, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|F Chain F, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|G Chain G, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|H Chain H, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|I Chain I, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
Length = 385
Score = 57.8 bits (138), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 33 SEEKIDETVLKTLFESGAGSFALSEPGSGSDAFA-MKTTATKDGNHYILNGSKMWISNAD 91
SEE+ E + K G F L+EP GSD + MKT A ++G+ ++LNG+KMWI+N +
Sbjct: 109 SEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWITNGN 168
Query: 92 IANIFLVMA 100
+A++ ++ A
Sbjct: 169 LAHLAVIWA 177
>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
pdb|1BUC|B Chain B, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
Length = 383
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 51 GSFALSEPGSGSDAFAMKTTATK-DGNHYILNGSKMWISNADIANIFLVMANVDVSKG 107
G+F L+EP +G+DA +T ATK D Y LNGSK++I+N A+I++V A D SKG
Sbjct: 124 GAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKG 181
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|B Chain B, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|C Chain C, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|D Chain D, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
Length = 395
Score = 56.2 bits (134), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/53 (50%), Positives = 36/53 (67%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVD 103
G F L+EP GSD +M T A K Y L+GSKMWI+N+ IA++F+V A +D
Sbjct: 134 GCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLD 186
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|B Chain B, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|C Chain C, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|D Chain D, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EON|A Chain A, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|B Chain B, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|C Chain C, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|D Chain D, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3II9|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
Length = 396
Score = 56.2 bits (134), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/53 (50%), Positives = 36/53 (67%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVD 103
G F L+EP GSD +M T A K Y L+GSKMWI+N+ IA++F+V A +D
Sbjct: 135 GCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLD 187
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GNC|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
Length = 399
Score = 56.2 bits (134), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/53 (50%), Positives = 36/53 (67%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVD 103
G F L+EP GSD +M T A K Y L+GSKMWI+N+ IA++F+V A +D
Sbjct: 138 GCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLD 190
>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|1WS9|B Chain B, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2CX9|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2D29|A Chain A, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2D29|B Chain B, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
Length = 387
Score = 53.9 bits (128), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 37/53 (69%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVD 103
G++ L+EPGSGSDA A+KT A K + LNG+K +I+ +A +++VMA D
Sbjct: 123 GAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTD 175
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
pdb|2R0N|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 52.0 bits (123), Expect = 8e-08, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGNH--YILNGSKMWISNADIANIFLVMANVD 103
G F L+EP SGSD +M+T A + ++ Y LNG+K WI+N+ +A++F+V A +
Sbjct: 131 GCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE 185
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 52.0 bits (123), Expect = 8e-08, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGNH--YILNGSKMWISNADIANIFLVMANVD 103
G F L+EP SGSD +M+T A + ++ Y LNG+K WI+N+ +A++F+V A +
Sbjct: 131 GCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE 185
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
Length = 392
Score = 52.0 bits (123), Expect = 9e-08, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGNH--YILNGSKMWISNADIANIFLVMANVD 103
G F L+EP SGSD +M+T A + ++ Y LNG+K WI+N+ +A++F+V A +
Sbjct: 129 GCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE 183
>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3OIB|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3P4T|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
pdb|3P4T|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
Length = 403
Score = 51.6 bits (122), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 26 PYVQKMESEEKIDETVLKTLFESGAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKM 85
P++ + ID V TL G+ A++EPG GSD ++T A DG+HY++NG+K
Sbjct: 118 PHMIASGDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVINGAKT 177
Query: 86 WISNADIANIFLVMA 100
+I++ A+ + A
Sbjct: 178 YITSGVRADYVVTAA 192
>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
pdb|2DVL|B Chain B, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
Length = 372
Score = 50.1 bits (118), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVD--VSKGK 108
G+F L+EP +GSDA +++ A + ++LNG K WI++A A++++VMA + +S
Sbjct: 119 GAFCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHAHLYVVMARTEKGISAFL 178
Query: 109 VTKG 112
V KG
Sbjct: 179 VEKG 182
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
pdb|3NF4|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
Length = 387
Score = 49.3 bits (116), Expect = 6e-07, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 34/50 (68%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMA 100
G+++LSEP +GSDA A++ AT Y++NGSK WI++ A+ + + A
Sbjct: 131 GAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGGKADFYTLFA 180
>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|B Chain B, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|C Chain C, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|D Chain D, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 403
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 15 IIAKLAKETIA-PYVQKMESEEKIDETVLKTLFESGAGSFALSEPGSGSDAFAMKTTATK 73
+ A L IA P++ S+ I+ V TL GS ++EPG+GSD ++T A +
Sbjct: 109 VCAALFTHGIALPHIAANGSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVR 168
Query: 74 DGNHYILNGSKMWISNA 90
+G+ Y++NG+K +I++
Sbjct: 169 EGDTYVVNGAKTFITSG 185
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|E Chain E, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|F Chain F, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
Length = 449
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 52 SFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMAN 101
+AL+EP +GSDA + TTATK + +NG K WI N+ A++ ++ A
Sbjct: 171 CWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFAR 220
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
Length = 436
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 52 SFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMAN 101
+AL+EP +GSDA + TTATK + +NG K WI N+ A++ ++ A
Sbjct: 171 CWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFAR 220
>pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of
Fk520 Polyketide Immunosuppresant
Length = 366
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 34/70 (48%)
Query: 40 TVLKTLFESGAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVM 99
T LK L + SE +GSD AM+T DG+ +++G K+W + A A+ +V
Sbjct: 96 TFLKELTSGKLAAVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVF 155
Query: 100 ANVDVSKGKV 109
+ G V
Sbjct: 156 GLQEDGSGAV 165
>pdb|3MKH|A Chain A, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|B Chain B, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|C Chain C, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|D Chain D, Podospora Anserina Nitroalkane Oxidase
Length = 438
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 9/53 (16%)
Query: 46 FESGAGS----FALSEPGSGSDAF-----AMKTTATKDGNHYILNGSKMWISN 89
F SG GS SEPG ++A +TTA +G+ +++NG KMW +N
Sbjct: 121 FLSGEGSPLASLVFSEPGGVANALEKGAPGFQTTARLEGDEWVINGEKMWATN 173
>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
pdb|2WBI|B Chain B, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
Length = 428
Score = 33.1 bits (74), Expect = 0.040, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 25 APYVQKME------SEEKIDETVLKTLFESGAGSFALSEPG-SGSDAFAMKTTATKDGNH 77
AP ME SEE+ + + L + F ++EP + SDA ++ + +D +
Sbjct: 118 APDTGNMEVLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDEDS 177
Query: 78 YILNGSKMWISNA 90
Y++NG K W S A
Sbjct: 178 YVINGKKWWSSGA 190
>pdb|2C0U|A Chain A, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|B Chain B, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|C Chain C, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|D Chain D, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
Length = 439
Score = 32.7 bits (73), Expect = 0.050, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 10/63 (15%)
Query: 37 IDETVLKTLFESGAG----SFALSEPGSGSDAF-----AMKTTATKDGNHYILNGSKMWI 87
+ E LK F SG G S SEP ++ ++TTA K GN ++++G K+W
Sbjct: 112 LQEKFLKP-FISGEGEPLASLXHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWP 170
Query: 88 SNA 90
SN+
Sbjct: 171 SNS 173
>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From
Mycobacterium Abscessus
Length = 415
Score = 32.7 bits (73), Expect = 0.057, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 28 VQKMESEEKIDETVLKTLFESGAGS-FALSEPG-SGSDAFAMKTTATKDGNHYILNGSKM 85
+ + S+E+ E L+ L E S F ++EP + SDA M TA +G+ ++NG K
Sbjct: 121 LHRYGSQEQ-KEVWLEPLLEGDIRSAFCMTEPDVASSDATNMAATAVVEGDEVVINGRKW 179
Query: 86 W 86
W
Sbjct: 180 W 180
>pdb|3D9G|A Chain A, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|B Chain B, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|C Chain C, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|D Chain D, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
Length = 438
Score = 32.3 bits (72), Expect = 0.064, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 10/63 (15%)
Query: 37 IDETVLKTLFESGAG----SFALSEPGSGSDAF-----AMKTTATKDGNHYILNGSKMWI 87
+ E LK F SG G S SEP ++ ++TTA K GN ++++G K+W
Sbjct: 111 LQEKFLKP-FISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWP 169
Query: 88 SNA 90
SN+
Sbjct: 170 SNS 172
>pdb|3D9F|A Chain A, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|B Chain B, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|C Chain C, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|D Chain D, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
Length = 438
Score = 32.3 bits (72), Expect = 0.064, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 10/63 (15%)
Query: 37 IDETVLKTLFESGAG----SFALSEPGSGSDAF-----AMKTTATKDGNHYILNGSKMWI 87
+ E LK F SG G S SEP ++ ++TTA K GN ++++G K+W
Sbjct: 111 LQEKFLKP-FISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWP 169
Query: 88 SNA 90
SN+
Sbjct: 170 SNS 172
>pdb|3D9D|A Chain A, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|B Chain B, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|C Chain C, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|D Chain D, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9E|A Chain A, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|B Chain B, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|C Chain C, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|D Chain D, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3FCJ|A Chain A, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|B Chain B, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|C Chain C, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|D Chain D, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
Length = 438
Score = 32.3 bits (72), Expect = 0.064, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 10/63 (15%)
Query: 37 IDETVLKTLFESGAG----SFALSEPGSGSDAF-----AMKTTATKDGNHYILNGSKMWI 87
+ E LK F SG G S SEP ++ ++TTA K GN ++++G K+W
Sbjct: 111 LQEKFLKP-FISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWP 169
Query: 88 SNA 90
SN+
Sbjct: 170 SNS 172
>pdb|2REH|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|B Chain B, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|C Chain C, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|D Chain D, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
Length = 439
Score = 32.3 bits (72), Expect = 0.065, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 10/63 (15%)
Query: 37 IDETVLKTLFESGAG----SFALSEPGSGSDAF-----AMKTTATKDGNHYILNGSKMWI 87
+ E LK F SG G S SEP ++ ++TTA K GN ++++G K+W
Sbjct: 112 LQEKFLKP-FISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWP 170
Query: 88 SNA 90
SN+
Sbjct: 171 SNS 173
>pdb|2C12|A Chain A, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|B Chain B, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|C Chain C, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|D Chain D, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|E Chain E, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|F Chain F, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
Length = 439
Score = 32.3 bits (72), Expect = 0.065, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 10/63 (15%)
Query: 37 IDETVLKTLFESGAG----SFALSEPGSGSDAF-----AMKTTATKDGNHYILNGSKMWI 87
+ E LK F SG G S SEP ++ ++TTA K GN ++++G K+W
Sbjct: 112 LQEKFLKP-FISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWP 170
Query: 88 SNA 90
SN+
Sbjct: 171 SNS 173
>pdb|2ZAF|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|B Chain B, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|C Chain C, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|D Chain D, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
Length = 439
Score = 32.3 bits (72), Expect = 0.068, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 10/63 (15%)
Query: 37 IDETVLKTLFESGAG----SFALSEPGSGSDAF-----AMKTTATKDGNHYILNGSKMWI 87
+ E LK F SG G S SEP ++ ++TTA K GN ++++G K+W
Sbjct: 112 LQEKFLKP-FISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWP 170
Query: 88 SNA 90
SN+
Sbjct: 171 SNS 173
>pdb|2IU8|A Chain A, Chlamydia Trachomatis Lpxd With 25mm Udpglcnac (Complex I)
pdb|2IU8|B Chain B, Chlamydia Trachomatis Lpxd With 25mm Udpglcnac (Complex I)
pdb|2IU8|C Chain C, Chlamydia Trachomatis Lpxd With 25mm Udpglcnac (Complex I)
pdb|2IU9|A Chain A, Chlamydia Trachomatis Lpxd With 100mm Udpglcnac (complex
Ii)
pdb|2IU9|B Chain B, Chlamydia Trachomatis Lpxd With 100mm Udpglcnac (complex
Ii)
pdb|2IU9|C Chain C, Chlamydia Trachomatis Lpxd With 100mm Udpglcnac (complex
Ii)
pdb|2IUA|A Chain A, C. Trachomatis Lpxd
pdb|2IUA|B Chain B, C. Trachomatis Lpxd
pdb|2IUA|C Chain C, C. Trachomatis Lpxd
Length = 374
Score = 30.4 bits (67), Expect = 0.27, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 71 ATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGKVTKGLFSSIP 118
+TK GNH I+ G + IA+ ++MA V+K + G++ P
Sbjct: 286 STKIGNHVIIGGQAGITGHICIADHVIMMAQTGVTKSITSPGIYGGAP 333
>pdb|4DOY|A Chain A, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|B Chain B, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|C Chain C, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|D Chain D, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|E Chain E, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|F Chain F, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|G Chain G, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|H Chain H, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
Length = 437
Score = 30.0 bits (66), Expect = 0.31, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 23 TIAPYVQKMESEEKIDETVLKTLFESGAGSFALSEPGSGSDAFAMKTTATKDGNHYILNG 82
T AP ++ + S+E+ + + + A SE S + + T T+DG Y+LNG
Sbjct: 119 TNAPMIELIGSQEQEEHLYTQIAQNNWWTGNASSENNSHVLDWKVSATPTEDGG-YVLNG 177
Query: 83 SKMWISNADIANIFLVMANVDVSKGKVTKGLFSSIPT 119
+K + S A +++ V V + + ++IPT
Sbjct: 178 TKHFCSGAKGSDLLFVFGVVQDDSPQQGAIIAAAIPT 214
>pdb|1R4M|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|C Chain C, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|E Chain E, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|G Chain G, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|C Chain C, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|E Chain E, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|G Chain G, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 529
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 12/67 (17%)
Query: 41 VLKTLFESGAGSFALSEPG--SGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLV 98
+LK L G GSF + + SG DA GN++ L S + + A+ A FL
Sbjct: 45 ILKNLVLPGIGSFTIIDGNQVSGEDA----------GNNFFLQRSSIGKNRAEAAMEFLQ 94
Query: 99 MANVDVS 105
N DVS
Sbjct: 95 ELNSDVS 101
>pdb|1TT5|A Chain A, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|C Chain C, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|3DBH|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBL|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBR|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 531
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 12/67 (17%)
Query: 41 VLKTLFESGAGSFALSEPG--SGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLV 98
+LK L G GSF + + SG DA GN++ L S + + A+ A FL
Sbjct: 47 ILKNLVLPGIGSFTIIDGNQVSGEDA----------GNNFFLQRSSIGKNRAEAAMEFLQ 96
Query: 99 MANVDVS 105
N DVS
Sbjct: 97 ELNSDVS 103
>pdb|3GZN|A Chain A, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|C Chain C, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 534
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 12/67 (17%)
Query: 41 VLKTLFESGAGSFALSEPG--SGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLV 98
+LK L G GSF + + SG DA GN++ L S + + A+ A FL
Sbjct: 45 ILKNLVLPGIGSFTIIDGNQVSGEDA----------GNNFFLQRSSIGKNRAEAAMEFLQ 94
Query: 99 MANVDVS 105
N DVS
Sbjct: 95 ELNSDVS 101
>pdb|1YOV|A Chain A, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
pdb|1YOV|C Chain C, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
Length = 537
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 12/67 (17%)
Query: 41 VLKTLFESGAGSFALSEPG--SGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLV 98
+LK L G GSF + + SG DA GN++ L S + + A+ A FL
Sbjct: 48 ILKNLVLPGIGSFTIIDGNQVSGEDA----------GNNFFLQRSSIGKNRAEAAMEFLQ 97
Query: 99 MANVDVS 105
N DVS
Sbjct: 98 ELNSDVS 104
>pdb|2NVU|A Chain A, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 536
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 12/67 (17%)
Query: 41 VLKTLFESGAGSFALSEPG--SGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLV 98
+LK L G GSF + + SG DA GN++ L S + + A+ A FL
Sbjct: 47 ILKNLVLPGIGSFTIIDGNQVSGEDA----------GNNFFLQRSSIGKNRAEAAMEFLQ 96
Query: 99 MANVDVS 105
N DVS
Sbjct: 97 ELNSDVS 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,293,086
Number of Sequences: 62578
Number of extensions: 120857
Number of successful extensions: 269
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 211
Number of HSP's gapped (non-prelim): 57
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)