Query psy5140
Match_columns 120
No_of_seqs 120 out of 1294
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 18:21:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5140.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5140hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0139|consensus 99.9 3.8E-26 8.2E-31 157.6 9.7 116 4-120 36-220 (398)
2 KOG0141|consensus 99.9 1.7E-25 3.6E-30 152.9 12.7 116 3-119 39-228 (421)
3 KOG0140|consensus 99.9 2.6E-25 5.6E-30 151.8 9.9 117 3-120 26-214 (408)
4 PRK03354 crotonobetainyl-CoA d 99.9 1.4E-23 3.1E-28 150.3 15.6 119 1-120 1-188 (380)
5 PRK12341 putative acyl-CoA deh 99.9 7.5E-23 1.6E-27 146.6 15.7 119 1-120 1-189 (381)
6 cd01151 GCD Glutaryl-CoA dehyd 99.9 1.2E-22 2.6E-27 145.8 15.6 116 1-120 9-193 (386)
7 TIGR03203 pimD_small pimeloyl- 99.9 1.2E-22 2.7E-27 145.5 15.0 118 2-120 1-189 (378)
8 PLN02519 isovaleryl-CoA dehydr 99.9 3.6E-22 7.7E-27 144.1 15.5 118 2-120 23-212 (404)
9 cd01156 IVD Isovaleryl-CoA deh 99.9 1.3E-21 2.8E-26 139.8 15.5 115 5-120 2-186 (376)
10 TIGR03207 cyc_hxne_CoA_dh cycl 99.9 1.1E-21 2.4E-26 140.1 15.0 115 5-120 1-185 (372)
11 cd01157 MCAD Medium chain acyl 99.9 1.6E-21 3.5E-26 139.5 15.0 115 5-120 1-187 (378)
12 cd01162 IBD Isobutyryl-CoA deh 99.9 2.4E-21 5.1E-26 138.6 15.4 114 5-120 1-183 (375)
13 cd01160 LCAD Long chain acyl-C 99.9 2.5E-21 5.4E-26 138.2 15.0 113 7-120 1-183 (372)
14 TIGR03204 pimC_large pimeloyl- 99.9 3.4E-21 7.3E-26 138.8 14.9 118 2-120 1-192 (395)
15 PLN02526 acyl-coenzyme A oxida 99.9 4E-21 8.6E-26 139.1 15.3 116 1-120 25-209 (412)
16 PTZ00461 isovaleryl-CoA dehydr 99.9 4.4E-21 9.4E-26 138.7 14.6 112 3-120 35-217 (410)
17 KOG0138|consensus 99.9 6.3E-21 1.4E-25 130.4 11.4 112 4-119 54-236 (432)
18 cd01161 VLCAD Very long chain 99.9 2.7E-20 5.9E-25 134.5 14.8 117 1-120 23-214 (409)
19 cd01158 SCAD_SBCAD Short chain 99.9 3.1E-20 6.7E-25 132.5 14.6 113 7-120 1-183 (373)
20 COG1960 CaiA Acyl-CoA dehydrog 99.8 6.8E-20 1.5E-24 131.7 13.7 119 1-120 1-197 (393)
21 cd01152 ACAD_fadE6_17_26 Putat 99.8 2.8E-19 6.2E-24 128.1 12.2 113 7-120 1-188 (380)
22 PF02770 Acyl-CoA_dh_M: Acyl-C 99.8 2.2E-19 4.8E-24 94.7 7.0 52 52-103 1-52 (52)
23 PTZ00456 acyl-CoA dehydrogenas 99.8 2.2E-18 4.7E-23 129.9 12.7 110 9-119 60-256 (622)
24 PLN02636 acyl-coenzyme A oxida 99.8 2.1E-18 4.5E-23 131.1 11.6 115 4-119 60-256 (686)
25 cd00567 ACAD Acyl-CoA dehydrog 99.8 1.6E-17 3.5E-22 116.5 15.1 113 7-120 1-140 (327)
26 cd01153 ACAD_fadE5 Putative ac 99.8 5.7E-18 1.2E-22 122.5 13.0 107 13-120 2-193 (407)
27 cd01155 ACAD_FadE2 Acyl-CoA de 99.8 1.3E-17 2.8E-22 120.1 14.8 111 9-120 3-200 (394)
28 cd01154 AidB Proteins involved 99.8 2E-17 4.3E-22 120.1 11.9 69 50-120 148-218 (418)
29 PRK09463 fadE acyl-CoA dehydro 99.7 5.5E-17 1.2E-21 124.3 14.1 113 5-120 79-277 (777)
30 PLN02876 acyl-CoA dehydrogenas 99.7 9.6E-17 2.1E-21 124.6 14.9 70 50-120 551-624 (822)
31 PRK13026 acyl-CoA dehydrogenas 99.7 1.2E-16 2.6E-21 122.3 13.8 70 50-120 193-276 (774)
32 KOG0137|consensus 99.7 8.4E-16 1.8E-20 112.6 12.0 70 50-120 193-268 (634)
33 cd01163 DszC Dibenzothiophene 99.7 8.6E-16 1.9E-20 110.0 12.0 98 16-120 3-168 (377)
34 PLN02312 acyl-CoA oxidase 99.7 1.3E-15 2.7E-20 116.0 10.7 68 50-118 186-261 (680)
35 PRK11561 isovaleryl CoA dehydr 99.6 1.4E-14 3E-19 107.8 9.2 64 50-120 179-243 (538)
36 cd01159 NcnH Naphthocyclinone 99.6 6.4E-15 1.4E-19 105.3 6.5 103 16-120 3-161 (370)
37 PTZ00460 acyl-CoA dehydrogenas 99.5 7.6E-14 1.7E-18 105.9 9.4 68 50-118 128-203 (646)
38 PLN02443 acyl-coenzyme A oxida 99.5 2.9E-13 6.3E-18 103.0 9.7 69 50-119 132-208 (664)
39 cd01150 AXO Peroxisomal acyl-C 99.5 2.7E-13 5.9E-18 102.6 8.7 69 50-119 135-211 (610)
40 KOG1469|consensus 99.4 1.3E-12 2.8E-17 88.9 7.7 70 50-120 114-188 (392)
41 PTZ00457 acyl-CoA dehydrogenas 99.3 2.1E-11 4.5E-16 90.6 9.2 68 50-120 135-210 (520)
42 KOG0135|consensus 98.8 1E-08 2.2E-13 75.7 6.0 68 50-118 157-232 (661)
43 PF02771 Acyl-CoA_dh_N: Acyl-C 98.3 3.1E-07 6.8E-12 55.1 1.5 58 6-63 1-58 (113)
44 TIGR02309 HpaB-1 4-hydroxyphen 98.1 2.7E-06 5.9E-11 63.2 4.1 69 50-120 142-221 (477)
45 KOG0136|consensus 98.1 9.6E-06 2.1E-10 61.3 5.5 78 40-118 130-219 (670)
46 PF11794 HpaB_N: 4-hydroxyphen 96.3 0.11 2.3E-06 36.2 10.0 78 42-120 129-215 (264)
47 COG2368 Aromatic ring hydroxyl 90.9 0.51 1.1E-05 35.5 4.5 83 37-120 129-224 (493)
48 TIGR02310 HpaB-2 4-hydroxyphen 89.9 0.43 9.3E-06 36.4 3.4 70 50-120 151-228 (519)
49 PF04115 Ureidogly_hydro: Urei 60.0 27 0.00057 22.5 4.4 38 82-120 80-117 (165)
50 PF01726 LexA_DNA_bind: LexA D 54.5 33 0.00072 18.4 4.8 46 4-49 3-54 (65)
51 PF13051 DUF3912: Protein of u 45.2 46 0.001 17.6 3.0 25 78-102 2-26 (68)
52 PF05428 CRF-BP: Corticotropin 44.7 7.9 0.00017 27.5 0.2 13 75-87 113-125 (311)
53 KOG1416|consensus 42.3 84 0.0018 23.9 5.0 54 39-92 394-452 (475)
54 PHA02095 hypothetical protein 39.0 25 0.00053 19.5 1.5 16 73-88 24-39 (84)
55 PF09859 Oxygenase-NA: Oxygena 31.7 1.5E+02 0.0033 19.4 6.4 45 5-49 11-58 (173)
56 PF12894 Apc4_WD40: Anaphase-p 28.0 46 0.001 16.6 1.4 9 78-86 38-46 (47)
57 PF15631 Imm-NTF2-2: NTF2 fold 25.1 1.2E+02 0.0025 16.6 2.7 16 70-85 25-40 (66)
58 smart00481 POLIIIAc DNA polyme 24.6 95 0.0021 16.2 2.4 24 36-59 15-38 (67)
59 KOG4234|consensus 24.1 1.4E+02 0.003 20.6 3.4 44 34-81 219-262 (271)
60 PF10115 HlyU: Transcriptional 23.7 55 0.0012 19.1 1.3 25 73-97 35-59 (91)
61 COG2524 Predicted transcriptio 21.7 2.1E+02 0.0047 20.3 4.0 46 4-49 3-53 (294)
62 cd00148 PROF Profilin binds ac 21.5 2E+02 0.0044 17.4 3.9 26 75-103 59-84 (127)
No 1
>KOG0139|consensus
Probab=99.94 E-value=3.8e-26 Score=157.57 Aligned_cols=116 Identities=50% Similarity=0.767 Sum_probs=111.6
Q ss_pred CCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC----------------------------------
Q psy5140 4 AYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG---------------------------------- 49 (120)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G---------------------------------- 49 (120)
.+++.+.++++++++|.++.+.|.+++.|+++.+|..+++.+.++|
T Consensus 36 ~l~E~e~~l~~tvrkfa~~~i~Plv~~mD~~~~~~~~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk~d~sv 115 (398)
T KOG0139|consen 36 ILSETEQMLQKTVRKFAQEEIKPLVREMDRESRYPASVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISKVDASV 115 (398)
T ss_pred hcCcHHHHHHHHHHHHHHHhcchHHHhhhhhccCCHHHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHHhccCccc
Confidence 4788999999999999999999999999999999999999999998
Q ss_pred -----------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCCCCC
Q psy5140 50 -----------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIAN 94 (120)
Q Consensus 50 -----------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~ 94 (120)
++++++|||++|||...+.|+|.++++.|+|||.|.||||+..|+
T Consensus 116 ~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWItN~~~A~ 195 (398)
T KOG0139|consen 116 GVIVDVQNTLYLPLIIQFGTEEQKEKYLPKLTGDLVGSFALSEPGAGSDAFALKTTAKKDGDDYVINGSKMWITNAGEAD 195 (398)
T ss_pred eeEEEecccccchHHHHhCcHHHHhhhcchhhccccceeeecCCCCCcchHHhhhhHhhcCCeEEEecceeeecCCcccc
Confidence 999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 95 IFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 95 ~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
+++|+|..+...+..++++|+ ||+|
T Consensus 196 ~~lVfan~d~~~~~Kgit~fi-V~rd 220 (398)
T KOG0139|consen 196 WFLVFANADPSKGYKGITCFI-VPRD 220 (398)
T ss_pred eEEEEEecChhhccCceeEEE-eeCC
Confidence 999999998778899999999 9986
No 2
>KOG0141|consensus
Probab=99.94 E-value=1.7e-25 Score=152.94 Aligned_cols=116 Identities=32% Similarity=0.509 Sum_probs=108.8
Q ss_pred CCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCc--cHHHHHHHhhcC-------------------------------
Q psy5140 3 MAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKI--DETVLKTLFESG------------------------------- 49 (120)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~l~~~G------------------------------- 49 (120)
|-+++++..+|+++++|+.+++.|.+.++|+...| .+++|+.|.+.|
T Consensus 39 ~g~~~e~~~~r~sv~kF~qeelaP~a~eidk~n~~~~~r~~WkklG~~gllGita~~~~GG~G~~y~~h~ivmEE~sra~ 118 (421)
T KOG0141|consen 39 FGLSDEQDQLRESVRKFFQEELAPHASEIDKANEFKDLREFWKKLGKQGLLGITAPEEYGGSGGGYLSHCIVMEEISRAS 118 (421)
T ss_pred cCCCHHHHHHHHHHHHHHHHhhcchhhhhhhcCCcchHHHHHHHhhhcCcccccchhhhCCCchhHHHHHHHHHHHHhhc
Confidence 34789999999999999999999999999999999 578999999998
Q ss_pred ---------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCC
Q psy5140 50 ---------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNA 90 (120)
Q Consensus 50 ---------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~ 90 (120)
+++++++||.+|||+.++.+.|.+.++.|+|||.|.||||+
T Consensus 119 g~v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalAMsEp~AGSDvv~mK~~Aek~g~~yiLNGsK~witNG 198 (421)
T KOG0141|consen 119 GGVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAMSEPGAGSDVVSMKLKAEKKGDDYILNGSKFWITNG 198 (421)
T ss_pred CCcccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceeeecCCCCCCccceeeeeceecCCcEEecCcEEEEecC
Confidence 89999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCC--CCCcceEEEEEeeC
Q psy5140 91 DIANIFLVMANVDVS--KGKVTKGLFSSIPT 119 (120)
Q Consensus 91 ~~a~~~~v~a~~~~~--~~~~~~~~~~~V~~ 119 (120)
+.||.++|.|+++.. ++..|+++|+ |..
T Consensus 199 ~~advliVyAkTd~~a~~~~hGIt~Fi-VEk 228 (421)
T KOG0141|consen 199 PDADVLIVYAKTDHSAVPPSHGITAFI-VEK 228 (421)
T ss_pred CCCcEEEEEEecCCCCCCCcCceEEEE-EcC
Confidence 999999999999876 6678999999 974
No 3
>KOG0140|consensus
Probab=99.93 E-value=2.6e-25 Score=151.81 Aligned_cols=117 Identities=28% Similarity=0.489 Sum_probs=111.0
Q ss_pred CCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC---------------------------------
Q psy5140 3 MAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG--------------------------------- 49 (120)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G--------------------------------- 49 (120)
|.++++|.++++.+++|..+++.|...++|+.+.||.++++...++|
T Consensus 26 f~L~e~qke~q~~A~kFa~~e~~P~aae~Dk~ge~P~~iirkA~~lG~~~~~ip~~~GG~Gls~l~t~lI~E~LayGCtg 105 (408)
T KOG0140|consen 26 FGLTEDQKEFQEAARKFAKDEMIPNAAEYDKSGEFPWEIIRKAHELGFMNTYIPEDYGGLGLSRLDTCLIFEALAYGCTG 105 (408)
T ss_pred cCcchHHHHHHHHHHHHHHHhhccchhhhcccCCCcHHHHHHHHHcccCcccCccccCCCCchhHHHHHHHHHHHccchh
Confidence 78899999999999999999999999999999999999999999998
Q ss_pred ------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCCCC
Q psy5140 50 ------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIA 93 (120)
Q Consensus 50 ------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a 93 (120)
+.+.|++||++|||+.++.|+|++.++.|+|||+|.||||+++|
T Consensus 106 ~~~~I~~~~l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEPgAGSDvagikTka~KkGDeYiiNGsKawItg~G~a 185 (408)
T KOG0140|consen 106 IQTAISIHNLAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKKGDEYIINGSKAWITGAGHA 185 (408)
T ss_pred HHHHHhccchhhhhehhcCcHHHHHhhhhhhhcchhhhhhhccCCCCCcchhhhhhhhhhcCCEEEEcCceeeeecCCcc
Confidence 78899999999999999999999999999999999999999999
Q ss_pred CEEEEEEEeCCC---CCCcceEEEEEeeCC
Q psy5140 94 NIFLVMANVDVS---KGKVTKGLFSSIPTG 120 (120)
Q Consensus 94 ~~~~v~a~~~~~---~~~~~~~~~~~V~~~ 120 (120)
+|++|++|++++ ++..+.++|+ |+.|
T Consensus 186 nwyfVlaRtd~~pk~p~~Kaft~fi-Ve~d 214 (408)
T KOG0140|consen 186 NWYFVLARTDPDPKTPAGKAFTAFI-VEGD 214 (408)
T ss_pred ceEEEEEecCCCCCCCCCcceEEEE-EeCC
Confidence 999999999876 5567899999 9864
No 4
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=99.92 E-value=1.4e-23 Score=150.29 Aligned_cols=119 Identities=26% Similarity=0.315 Sum_probs=105.3
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhC-CchhhhhhhhcCccHHHHHHHhhcC------------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETI-APYVQKMESEEKIDETVLKTLFESG------------------------------ 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------ 49 (120)
|+|.++++++++++.+++|+++++ .+...+.|+.+.+|.+.|+.|++.|
T Consensus 1 m~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~la~~ 80 (380)
T PRK03354 1 MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRL 80 (380)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhccCChhHHHHHhhCCCCHHHHHHHHHCCCCccCCChhhCCCCCCHHHHHHHHHHHHhc
Confidence 889999999999999999999875 5666668888899999999999999
Q ss_pred --------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCC
Q psy5140 50 --------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 91 (120)
Q Consensus 50 --------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~ 91 (120)
+++++++||..|++...+.|++++.+|||+|||+|+|+|++.
T Consensus 81 ~~s~~~~~~~~~~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE~~~gs~~~~~~t~a~~~~~g~~lnG~K~fis~~~ 160 (380)
T PRK03354 81 GAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFITSSA 160 (380)
T ss_pred CcchHHHHHhcccHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCEEEEEEeCCEEEEeeEEEEEcCCC
Confidence 678999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 92 IANIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 92 ~a~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
.||+++|.++.+..++..++++|+ ||++
T Consensus 161 ~ad~~~v~a~~~~~~~~~~~~~~l-v~~~ 188 (380)
T PRK03354 161 YTPYIVVMARDGASPDKPVYTEWF-VDMS 188 (380)
T ss_pred cCCEEEEEEEcCCCCCCCceeEEE-EECC
Confidence 999999999975333345678898 9964
No 5
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=99.91 E-value=7.5e-23 Score=146.58 Aligned_cols=119 Identities=27% Similarity=0.364 Sum_probs=105.8
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCC-chhhhhhhhcCccHHHHHHHhhcC------------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIA-PYVQKMESEEKIDETVLKTLFESG------------------------------ 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~l~~~G------------------------------ 49 (120)
|+|.+++++.++++.++.|+.+.+. +...+.|+.+.+|.++|+.|++.|
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~la~~ 80 (381)
T PRK12341 1 MDFSLTEEQELLLASIRELITRNFPEEYFRTCDENGTYPREFMRALADNGISMLGVPEEFGGTPADYVTQMLVLEEVSKC 80 (381)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHHHhCCCCHHHHHHHHHCCCCCcCCChhhCCCCcCHHHHHHHHHHHhhc
Confidence 8999999999999999999998875 466667888899999999999998
Q ss_pred --------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCC
Q psy5140 50 --------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 91 (120)
Q Consensus 50 --------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~ 91 (120)
+.+++++||.+|++...+.+++++++|||+|||+|+|+||+.
T Consensus 81 ~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~gg~~lnG~K~~is~~~ 160 (381)
T PRK12341 81 GAPAFLITNGQCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKTFITGAK 160 (381)
T ss_pred ChhHHHHhhhhhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEEEecCCCCCCchhhCeeEEEEeCCEEEEEeEEEEEcCCc
Confidence 578899999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCCC-CCcceEEEEEeeCC
Q psy5140 92 IANIFLVMANVDVSK-GKVTKGLFSSIPTG 120 (120)
Q Consensus 92 ~a~~~~v~a~~~~~~-~~~~~~~~~~V~~~ 120 (120)
.||+++|.|+.+..+ +..++++|+ ||++
T Consensus 161 ~Ad~~~v~a~~~~~~~~~~~~~~~l-V~~~ 189 (381)
T PRK12341 161 EYPYMLVLARDPQPKDPKKAFTLWW-VDSS 189 (381)
T ss_pred cCCEEEEEEEcCCCCCCCCceEEEE-EeCC
Confidence 999999999976432 235688999 9974
No 6
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=99.90 E-value=1.2e-22 Score=145.78 Aligned_cols=116 Identities=37% Similarity=0.547 Sum_probs=105.6
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-------------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG------------------------------- 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------- 49 (120)
|+|.++++++++++.+++|+++++.+...+.|+.+.+|.++|+.|++.|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~ 88 (386)
T cd01151 9 LDDLLTEEERAIRDTAREFCQEELAPRVLEAYREEKFDRKIIEEMGELGLLGATIKGYGCAGLSSVAYGLIAREVERVDS 88 (386)
T ss_pred cccCCCHHHHHHHHHHHHHHHHhcCccHHHHHHhCCCCHHHHHHHHHCCCCccCccccCCCCCCHHHHHHHHHHHHhhCh
Confidence 6788999999999999999999999988788888889999999999998
Q ss_pred --------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCC
Q psy5140 50 --------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 91 (120)
Q Consensus 50 --------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~ 91 (120)
++|++++||.+|+++..+.++|+++++||+|||+|.|+|++.
T Consensus 89 s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~~~ 168 (386)
T cd01151 89 GYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWITNSP 168 (386)
T ss_pred hHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeEEEEEECCEEEEEEEEEeecCCC
Confidence 678999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 92 IANIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 92 ~a~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
.||+++|.++.++. .++.+|+ ||++
T Consensus 169 ~Ad~~lv~ar~~~~---~~~~~fl-Vp~~ 193 (386)
T cd01151 169 IADVFVVWARNDET---GKIRGFI-LERG 193 (386)
T ss_pred cCCEEEEEEEECCC---CcEEEEE-EcCC
Confidence 99999999998642 4678899 9964
No 7
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=99.90 E-value=1.2e-22 Score=145.48 Aligned_cols=118 Identities=25% Similarity=0.323 Sum_probs=103.7
Q ss_pred CCCCCchHHHHHHHHHHHHHhhCCchhhh--hhhhcCccHHHHHHHhhcC------------------------------
Q psy5140 2 DMAYKGLGRDRLNIIAKLAKETIAPYVQK--MESEEKIDETVLKTLFESG------------------------------ 49 (120)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~l~~~G------------------------------ 49 (120)
+|.++++++++++.+++|+.+.+.+...+ .|+.+.||.++|+.|.+.|
T Consensus 1 ~~~~~~eq~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~e~G~~~l~vPe~~GG~G~~~~~~~~v~eel~~~ 80 (378)
T TIGR03203 1 DFDLSEEQRLLKESVEGLLKTSYDFDSRKKYQKEKGGWSKAVWGKLAEQGLLGLPFSEADGGFGAGSVETMIVMEALGKA 80 (378)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhCCHHHHHHHHhccCCCCHHHHHHHHHCCCcccccchhcCCCCCCHHHHHHHHHHHhCc
Confidence 46789999999999999999888765443 4677889999999999999
Q ss_pred --------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCC
Q psy5140 50 --------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 91 (120)
Q Consensus 50 --------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~ 91 (120)
+.+++++||.+||+...+.|++++.+++|+|||+|.||+++.
T Consensus 81 ~~~~~~~~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~g~~~~l~G~K~~vt~a~ 160 (378)
T TIGR03203 81 LVLEPYLATVVIGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNGE 160 (378)
T ss_pred ccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecCCCCCCCcccceEEEEEcCCEEEEEeEEEEecCCc
Confidence 788999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCC-CCCcceEEEEEeeCC
Q psy5140 92 IANIFLVMANVDVS-KGKVTKGLFSSIPTG 120 (120)
Q Consensus 92 ~a~~~~v~a~~~~~-~~~~~~~~~~~V~~~ 120 (120)
.||+++|.+++++. ++..++++|+ ||++
T Consensus 161 ~Ad~~lv~ar~~~~~~~~~g~~~fl-V~~~ 189 (378)
T TIGR03203 161 TADTLIVTARTKGARRDRTGIGVFL-VPAG 189 (378)
T ss_pred cCCEEEEEEecCCCCCCCCceEEEE-EECC
Confidence 99999999998543 2446789999 9964
No 8
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=99.90 E-value=3.6e-22 Score=144.15 Aligned_cols=118 Identities=30% Similarity=0.506 Sum_probs=105.7
Q ss_pred CCCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHH--HHHHHhhcC------------------------------
Q psy5140 2 DMAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDET--VLKTLFESG------------------------------ 49 (120)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~l~~~G------------------------------ 49 (120)
||.+++++.++++.+++|+++++.+...+.|+.+.+|.+ +|+.|++.|
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~~~l~~~G~~~~~vP~e~GG~g~~~~~~~~v~e~la~~ 102 (404)
T PLN02519 23 SLLFDDTQLQFKESVQQFAQENIAPHAAAIDATNSFPKDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISRA 102 (404)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcchHHHHhcCCCCchHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHhhh
Confidence 688999999999999999999999988888888888876 699999998
Q ss_pred ----------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeC
Q psy5140 50 ----------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISN 89 (120)
Q Consensus 50 ----------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~ 89 (120)
++|++++||.+|++...+.+++++++|||+|||+|.|+++
T Consensus 103 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sEp~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~ 182 (404)
T PLN02519 103 SGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCTN 182 (404)
T ss_pred cccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCcCCCcccceEEEEEeCCEEEEEeEEEeecC
Confidence 6789999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 90 ADIANIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 90 ~~~a~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
+..||+++|.++.++.++..++++|+ ||++
T Consensus 183 a~~ad~~~v~a~~~~~~~~~~~~~~l-Vp~~ 212 (404)
T PLN02519 183 GPVAQTLVVYAKTDVAAGSKGITAFI-IEKG 212 (404)
T ss_pred CCcCCEEEEEEEeCCCCCCCeeEEEE-EeCC
Confidence 99999999999986544456788999 9963
No 9
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=99.89 E-value=1.3e-21 Score=139.82 Aligned_cols=115 Identities=32% Similarity=0.530 Sum_probs=103.4
Q ss_pred CCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-----------------------------------
Q psy5140 5 YKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG----------------------------------- 49 (120)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G----------------------------------- 49 (120)
++++++++++.+++|+++.+.+...+.|+.+.+|.+.|+.|++.|
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~~~~ 81 (376)
T cd01156 2 LDDEIEMLRQSVREFAQKEIAPLAAKIDRDNEFPRDLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEISRASGSVA 81 (376)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHhCCCCcccCCHhhCCCCCCHHHHHHHHHHHhccchhHH
Confidence 578899999999999999999988778888889999999999998
Q ss_pred -----------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCCCCC
Q psy5140 50 -----------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIAN 94 (120)
Q Consensus 50 -----------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~ 94 (120)
+++++++||.+|++...++++++++++||+|||+|.|++++..||
T Consensus 82 ~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~ 161 (376)
T cd01156 82 LSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGPDAD 161 (376)
T ss_pred HHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhCeEEEEEeCCEEEEEEEEEEecCCCcCC
Confidence 568999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 95 IFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 95 ~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
+++|.++.++.++..++++|+ ||++
T Consensus 162 ~~lv~a~~~~~~~~~~~~~~l-v~~~ 186 (376)
T cd01156 162 TLVVYAKTDPSAGAHGITAFI-VEKG 186 (376)
T ss_pred EEEEEEEeCCCCCCCceEEEE-EcCC
Confidence 999999976544446788999 9964
No 10
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=99.89 E-value=1.1e-21 Score=140.13 Aligned_cols=115 Identities=30% Similarity=0.435 Sum_probs=103.1
Q ss_pred CCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-----------------------------------
Q psy5140 5 YKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG----------------------------------- 49 (120)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G----------------------------------- 49 (120)
+++++.++++.+++|+.+.+.|...+.|+.+.+|.++|+.|.+.|
T Consensus 1 ~t~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~ 80 (372)
T TIGR03207 1 LNEDLQALADTARRFARERIAPGFKERDKTRVLDRELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQIARADLSMS 80 (372)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHHCCCCcccCChhHCCCCCCHHHHHHHHHHHHhhCccHH
Confidence 467889999999999999999988888888899999999999998
Q ss_pred ----------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCCCCCE
Q psy5140 50 ----------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANI 95 (120)
Q Consensus 50 ----------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~ 95 (120)
+.+++++||.+|++...+.++++++++||+|||+|.|||++..||+
T Consensus 81 ~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~k~~vs~~~~ad~ 160 (372)
T TIGR03207 81 YVNLLASLNGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISAADQADA 160 (372)
T ss_pred HHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCcChhhCEEEEEEeCCEEEEEEEEEEEcCCCcCCE
Confidence 7889999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCC-CCCcceEEEEEeeCC
Q psy5140 96 FLVMANVDVS-KGKVTKGLFSSIPTG 120 (120)
Q Consensus 96 ~~v~a~~~~~-~~~~~~~~~~~V~~~ 120 (120)
++|.++.+++ ++..++.+|+ ||++
T Consensus 161 ~lv~a~~~~~~~~~~~~~~~l-Vp~~ 185 (372)
T TIGR03207 161 AVVFARTGSEAEGARGISAFL-VPMD 185 (372)
T ss_pred EEEEEEcCCCCCCCCceEEEE-EcCC
Confidence 9999997543 2345688999 9964
No 11
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=99.88 E-value=1.6e-21 Score=139.45 Aligned_cols=115 Identities=29% Similarity=0.501 Sum_probs=102.5
Q ss_pred CCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-----------------------------------
Q psy5140 5 YKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG----------------------------------- 49 (120)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G----------------------------------- 49 (120)
+++++.++++.+++|+++.+.+...+.|+.+.+|.++|+.|++.|
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~~~~ 80 (378)
T cd01157 1 LTEQQKEFQETARKFAREEIIPVAAEYDKSGEYPWPLIKRAWELGLMNTHIPEDCGGLGLGTFDTCLITEELAYGCTGVQ 80 (378)
T ss_pred CCHHHHHHHHHHHHHHHHhcccchHHHHhhCCCCHHHHHHHHhCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhhhHHH
Confidence 467899999999999999999888888888899999999999998
Q ss_pred ----------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCCCCCE
Q psy5140 50 ----------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANI 95 (120)
Q Consensus 50 ----------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~ 95 (120)
+.+++++||..|++...+.++++++++||+|||+|.|+|++..||+
T Consensus 81 ~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad~ 160 (378)
T cd01157 81 TAIEANSLGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANW 160 (378)
T ss_pred HHHHhhhhhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhcCeEEEEEcCCEEEEeeEEEeecCCccCCE
Confidence 6789999999999998899999999999999999999999999999
Q ss_pred EEEEEEeCCCC---CCcceEEEEEeeCC
Q psy5140 96 FLVMANVDVSK---GKVTKGLFSSIPTG 120 (120)
Q Consensus 96 ~~v~a~~~~~~---~~~~~~~~~~V~~~ 120 (120)
++|.+++++++ +..++++|+ ||++
T Consensus 161 ~lv~a~~~~~~~~~~~~~~~~~l-v~~~ 187 (378)
T cd01157 161 YFLLARSDPDPKCPASKAFTGFI-VEAD 187 (378)
T ss_pred EEEEEEeCCcccCCCCCceEEEE-EcCC
Confidence 99999975432 235688999 9964
No 12
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=99.88 E-value=2.4e-21 Score=138.58 Aligned_cols=114 Identities=33% Similarity=0.546 Sum_probs=102.5
Q ss_pred CCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-----------------------------------
Q psy5140 5 YKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG----------------------------------- 49 (120)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G----------------------------------- 49 (120)
++++++++++.+++|+.+++.+...+.|..+.+|.++|+.|++.|
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l~~~~~~~~ 80 (375)
T cd01162 1 LNEEQRAIQEVARAFAAKEMAPHAADWDQKKHFPVDVLRKAAELGFGGIYIRDDVGGSGLSRLDASIIFEALSTGCVSTA 80 (375)
T ss_pred CCHHHHHHHHHHHHHHHHhCCcchhhHHhhCCCCHHHHHHHHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHHHhhchhHH
Confidence 467889999999999999999988888888999999999999998
Q ss_pred ----------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCCCCCE
Q psy5140 50 ----------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANI 95 (120)
Q Consensus 50 ----------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~ 95 (120)
+.+++++||.+|++...+.++++++++||+|||+|+|++++..||+
T Consensus 81 ~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad~ 160 (375)
T cd01162 81 AYISIHNMCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGDSDV 160 (375)
T ss_pred HHHHHhhhHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCCCChhhCEEEEEEeCCEEEEEEEEEEecCCCCCCE
Confidence 6789999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 96 FLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 96 ~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
++|.++.++. +..++++|+ ||++
T Consensus 161 ~~v~a~~~~~-~~~~~~~~l-v~~~ 183 (375)
T cd01162 161 YVVMARTGGE-GPKGISCFV-VEKG 183 (375)
T ss_pred EEEEEEecCC-CCCceEEEE-EeCC
Confidence 9999997542 235678899 9864
No 13
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=99.88 E-value=2.5e-21 Score=138.18 Aligned_cols=113 Identities=32% Similarity=0.567 Sum_probs=101.3
Q ss_pred chHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-------------------------------------
Q psy5140 7 GLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG------------------------------------- 49 (120)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------------- 49 (120)
+++.++++.+++|+.+.+.+...+.|+++.+|.++|+.|++.|
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~ 80 (372)
T cd01160 1 EEHDAFRDVVRRFFAKEVAPFHHEWEKAGEVPREVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELARAGGSGPGL 80 (372)
T ss_pred ChHHHHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHhcchHHHH
Confidence 4678999999999999998888888888899999999999998
Q ss_pred --------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCCCCCEEE
Q psy5140 50 --------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFL 97 (120)
Q Consensus 50 --------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~~~ 97 (120)
++|++++||.+|++...+.++++++++||+|||+|.|++++..||+++
T Consensus 81 ~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~Ad~~~ 160 (372)
T cd01160 81 SLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLADVVI 160 (372)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCeEEEEEeCCEEEEeeEEEEecCCCccCEEE
Confidence 578999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCC-CCCcceEEEEEeeCC
Q psy5140 98 VMANVDVS-KGKVTKGLFSSIPTG 120 (120)
Q Consensus 98 v~a~~~~~-~~~~~~~~~~~V~~~ 120 (120)
|.++++++ ++..++++|+ ||++
T Consensus 161 v~a~~~~~~~~~~~~~~~l-v~~~ 183 (372)
T cd01160 161 VVARTGGEARGAGGISLFL-VERG 183 (372)
T ss_pred EEEEeCCCCCCCCceEEEE-EeCC
Confidence 99998654 2345788999 9864
No 14
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=99.88 E-value=3.4e-21 Score=138.78 Aligned_cols=118 Identities=24% Similarity=0.381 Sum_probs=100.4
Q ss_pred CCCCCchHHHHHHHHHHHHHhhCCchhhhh-hhhcCccH----HHHHHHhhcC---------------------------
Q psy5140 2 DMAYKGLGRDRLNIIAKLAKETIAPYVQKM-ESEEKIDE----TVLKTLFESG--------------------------- 49 (120)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~----~~~~~l~~~G--------------------------- 49 (120)
||.+++++.+|++++++|+.+++.+...+. .+...+|. ++|+.|.++|
T Consensus 1 ~~~lteeq~~l~~~~r~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~e~G~~gl~vPe~~GG~G~~~~~~~~v~eel 80 (395)
T TIGR03204 1 DLAFSKEEQAFRDEVRSFFKDNVPADTRQKLVEGRHLTKDEMVTWWRILNKKGWGVSHWPKQYGGTGWTSVQHYIFNEEL 80 (395)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCChhhhhhhhccCCCChHHHHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHHHH
Confidence 578999999999999999998888766542 23345553 8999999999
Q ss_pred -----------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeee
Q psy5140 50 -----------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWIS 88 (120)
Q Consensus 50 -----------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~ 88 (120)
+.+++++||.+||+...+.|++++.+++|+|||+|.||+
T Consensus 81 g~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~g~~~~LnG~K~~vt 160 (395)
T TIGR03204 81 QSAPAPQPLAFGVSMVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTWTT 160 (395)
T ss_pred HhcCCCccchhHhHhhHHHHHHhCCHHHHHHHHHHHhCCchheEeEecCCCCCCChhhceEEEEEcCCEEEEeeEEEeec
Confidence 688999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCC-CCCcceEEEEEeeCC
Q psy5140 89 NADIANIFLVMANVDVS-KGKVTKGLFSSIPTG 120 (120)
Q Consensus 89 ~~~~a~~~~v~a~~~~~-~~~~~~~~~~~V~~~ 120 (120)
++..||+++|.+++++. ++..++++|+ ||.+
T Consensus 161 ~a~~Ad~~lv~a~~~~~~~~~~g~~~fl-V~~~ 192 (395)
T TIGR03204 161 LAQHADWIFCLCRTDPTAKKQMGISFIL-VDMK 192 (395)
T ss_pred CCccCCeEEEEEEeCCCCCCCCCeEEEE-EeCC
Confidence 99999999999997532 2345789999 9864
No 15
>PLN02526 acyl-coenzyme A oxidase
Probab=99.88 E-value=4e-21 Score=139.05 Aligned_cols=116 Identities=26% Similarity=0.389 Sum_probs=102.6
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-------------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG------------------------------- 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------- 49 (120)
|+..+++++.++++.+++|+.+++.+...+.++...+|.++|++|.++|
T Consensus 25 ~~~~~t~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~v~~~GG~G~~~~~~~~~~e~la~~~~ 104 (412)
T PLN02526 25 FDDLLTPEEQALRKRVRECMEKEVAPIMTEYWEKAEFPFHIIPKLGSLGIAGGTIKGYGCPGLSITASAIATAEVARVDA 104 (412)
T ss_pred cccCCCHHHHHHHHHHHHHHHHhcccchHHHHHhCCCCHHHHHHHHHCCCCcCcccccCCCCcCHHHHHHHHHHHHhhCc
Confidence 5666889999999999999998898887776777789999999999988
Q ss_pred --------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCC
Q psy5140 50 --------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 91 (120)
Q Consensus 50 --------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~ 91 (120)
+.+++++||.+|++...+.+++++.++||+|||+|.|++++.
T Consensus 105 s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~gg~~lnG~K~~vs~~~ 184 (412)
T PLN02526 105 SCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTTATKVEGGWILNGQKRWIGNST 184 (412)
T ss_pred hHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEEEEeeecCCC
Confidence 677899999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 92 IANIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 92 ~a~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
.||+++|.++.+.. .++++|+ ||++
T Consensus 185 ~Ad~~lv~a~~~~~---~~~~~fl-V~~~ 209 (412)
T PLN02526 185 FADVLVIFARNTTT---NQINGFI-VKKG 209 (412)
T ss_pred ccCEEEEEEEeCCC---CCeEEEE-EcCC
Confidence 99999999997532 4578898 9863
No 16
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=99.87 E-value=4.4e-21 Score=138.74 Aligned_cols=112 Identities=32% Similarity=0.580 Sum_probs=101.0
Q ss_pred CCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC---------------------------------
Q psy5140 3 MAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG--------------------------------- 49 (120)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G--------------------------------- 49 (120)
|.++++++++++.+++|+.+.+.+...+.|+...+|.++|+.|++.|
T Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s 114 (410)
T PTZ00461 35 YNPTPEHAALRETVAKFSREVVDKHAREDDINMHFNRDLFKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHHELSKYDPG 114 (410)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCccHHHHhhhCCCCHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHHhhCch
Confidence 57889999999999999998999988888888899999999999998
Q ss_pred -------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeC-CEEEEEeEeeeeeCCC
Q psy5140 50 -------------------------------------AGSFALSEPGSGSDAFAMKTTATKDG-NHYILNGSKMWISNAD 91 (120)
Q Consensus 50 -------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~-~g~~l~G~k~~v~~~~ 91 (120)
+++++++||.+|++...+.|++++.+ |||+|||+|.||||+.
T Consensus 115 ~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~gg~~L~G~K~~vs~a~ 194 (410)
T PTZ00461 115 FCLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITNGT 194 (410)
T ss_pred HHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChHHCeEEEEEcCCCeEEEEeEEEeECCCc
Confidence 67899999999999999999999875 5799999999999999
Q ss_pred CCCEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 92 IANIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 92 ~a~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
.||+++|.++++ .++++|+ ||++
T Consensus 195 ~Ad~~lv~a~~~-----~~~~~fl-Vp~~ 217 (410)
T PTZ00461 195 VADVFLIYAKVD-----GKITAFV-VERG 217 (410)
T ss_pred cCCEEEEEEEeC-----CceEEEE-EeCC
Confidence 999999999964 3478899 9964
No 17
>KOG0138|consensus
Probab=99.86 E-value=6.3e-21 Score=130.39 Aligned_cols=112 Identities=29% Similarity=0.469 Sum_probs=101.4
Q ss_pred CCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC----------------------------------
Q psy5140 4 AYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG---------------------------------- 49 (120)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G---------------------------------- 49 (120)
+++++...+|+++|+++++.+.|+..+..++..||.+++.+|.+.|
T Consensus 54 qLT~dE~air~~~Reycq~~l~Prvtea~r~e~F~~~i~pemGsmGvlG~tikGYGCaG~S~vaygl~~rEveRVDs~yr 133 (432)
T KOG0138|consen 54 QLTEDEIAIRDTFREYCQERLMPRVTEANRNEVFDREIIPEMGSMGVLGPTIKGYGCAGVSSVAYGLLAREVERVDSGYR 133 (432)
T ss_pred hcCHHHHHHHHHHHHHHHHHhhhHHHHHhhhccCChhhhhhhhccccccCcccCcCCCchHHHHHHHHHHHHHHhhhhch
Confidence 5678889999999999999999999999999999999999999998
Q ss_pred -----------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCE--EEEEeEeeeeeCCCC
Q psy5140 50 -----------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNH--YILNGSKMWISNADI 92 (120)
Q Consensus 50 -----------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g--~~l~G~k~~v~~~~~ 92 (120)
++||+++||.+|||+..+.|+|+.+.++ |.|||+|.||+|+..
T Consensus 134 s~~sVqsSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLTEPn~GSdpsgmeT~At~~e~~ktyklNGsKtWI~nsp~ 213 (432)
T KOG0138|consen 134 SAMSVQSSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLTEPNHGSDPSGMETRATYDESNKTYKLNGSKTWITNSPM 213 (432)
T ss_pred hhhhhhhhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEeccCCCCCCCcccccceeEEccCCceEEECCeeeeecCCcc
Confidence 9999999999999999999999988777 999999999999999
Q ss_pred CCEEEEEEEeCCCCCCcceEEEEEeeC
Q psy5140 93 ANIFLVMANVDVSKGKVTKGLFSSIPT 119 (120)
Q Consensus 93 a~~~~v~a~~~~~~~~~~~~~~~~V~~ 119 (120)
||+++|+||...+ ..+.=|+ |.+
T Consensus 214 aDl~vvwAr~~t~---n~I~GFi-~~k 236 (432)
T KOG0138|consen 214 ADLFVVWARCETD---NKIRGFI-LEK 236 (432)
T ss_pred cceEEEEEecccC---CceeeEE-Eec
Confidence 9999999998632 3355566 654
No 18
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=99.86 E-value=2.7e-20 Score=134.52 Aligned_cols=117 Identities=38% Similarity=0.553 Sum_probs=100.5
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-------------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG------------------------------- 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------- 49 (120)
|++.+++++.++++.+++|+++.+.+. +.++.+.+|.++|+.|++.|
T Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~v~e~l~~~~ 100 (409)
T cd01161 23 LTEEQTEELNMLVGPVEKFFEEVNDPA--KNDQLEKIPRKTLTQLKELGLFGLQVPEEYGGLGLNNTQYARLAEIVGMDL 100 (409)
T ss_pred cCccCCHHHHHHHHHHHHHHHHhCCch--hhccccCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHhhCh
Confidence 678889999999999999999888875 35667789999999999999
Q ss_pred --------------------------------------ceEEEeeCCCCCCCCCcceeEEEEe--CCEEEEEeEeeeeeC
Q psy5140 50 --------------------------------------AGSFALSEPGSGSDAFAMKTTATKD--GNHYILNGSKMWISN 89 (120)
Q Consensus 50 --------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~--~~g~~l~G~k~~v~~ 89 (120)
+.+++++||.+|++...+.++++++ ++||+|||+|.|+||
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gs~~~~~~t~a~~~~~g~g~~l~G~K~~vs~ 180 (409)
T cd01161 101 GFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTTAVLSEDGKHYVLNGSKIWITN 180 (409)
T ss_pred HHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEEecCCCCCCChhhCeeEEEEcCCCCEEEEEeEEEeecC
Confidence 7889999999999999999999984 457999999999999
Q ss_pred CCCCCEEEEEEEeCC--CCC--CcceEEEEEeeCC
Q psy5140 90 ADIANIFLVMANVDV--SKG--KVTKGLFSSIPTG 120 (120)
Q Consensus 90 ~~~a~~~~v~a~~~~--~~~--~~~~~~~~~V~~~ 120 (120)
+..||+++|.++.+. .++ ..+.++|+ ||++
T Consensus 181 ~~~Ad~~lv~ar~~~~~~~g~~~~~~~~fl-vp~~ 214 (409)
T cd01161 181 GGIADIFTVFAKTEVKDATGSVKDKITAFI-VERS 214 (409)
T ss_pred CCcCCEEEEEEEcCCCCCCCCCCCceEEEE-EeCC
Confidence 999999999999752 111 25688999 9864
No 19
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=99.85 E-value=3.1e-20 Score=132.48 Aligned_cols=113 Identities=42% Similarity=0.641 Sum_probs=100.1
Q ss_pred chHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-------------------------------------
Q psy5140 7 GLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG------------------------------------- 49 (120)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------------- 49 (120)
+++.++++.+++|+.+.+.+...+.|+.+.+|.+.|+.|++.|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~~~~~s~~~~ 80 (373)
T cd01158 1 EEHQMIRKTVRDFAEKEIAPLAAEMDEKGEFPREVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELAKVDASVAVI 80 (373)
T ss_pred ChHHHHHHHHHHHHHHhcccchHHHhhcCCCCHHHHHHHHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHHhhCccHHHH
Confidence 3678899999999998888888778888889999999999998
Q ss_pred ---------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCCCCCEE
Q psy5140 50 ---------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIF 96 (120)
Q Consensus 50 ---------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~~ 96 (120)
+++++++|+.+|++...+.++++++++||+|||+|.|++++..||++
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs~~~~~~~~a~~~~~g~~l~G~k~~vsg~~~ad~~ 160 (373)
T cd01158 81 VSVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEADFY 160 (373)
T ss_pred HHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCHHHCEeEEEEeCCEEEEeeEEEEEcCCCcCCEE
Confidence 67889999999998888999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 97 LVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 97 ~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
+|.++.+.+++..++++|+ ||++
T Consensus 161 lv~a~~~~~~~~~~~~~~l-vp~~ 183 (373)
T cd01158 161 IVFAVTDPSKGYRGITAFI-VERD 183 (373)
T ss_pred EEEEEcCCCCCCCceEEEE-EcCC
Confidence 9999875444446788999 9864
No 20
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=99.84 E-value=6.8e-20 Score=131.69 Aligned_cols=119 Identities=35% Similarity=0.633 Sum_probs=103.5
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhhhhhh---hcCccHHHHHHHhhcC----------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQKMES---EEKIDETVLKTLFESG---------------------------- 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~l~~~G---------------------------- 49 (120)
|.+.+++++.++++.+++|+++.+.+...+.++ ...+|.+.|+.+++.|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e~l~ 80 (393)
T COG1960 1 MDFDLSEEQEALRAEVREFAEEELAPEAAEIDRRIEDERFPRELLRALAEAGLLGLTIPEEYGGLGLSPLEQAAVLEELA 80 (393)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhcCcchhhhhhhcccccCHHHHHHHHHhCCcccCCCChhhCCCCcchhHHHHHHHHHH
Confidence 566777888999999999999888877777665 6888999999999998
Q ss_pred ---------------------------------------------ceEEEeeCCCCCCCCCcce-eEEEEeCCEEEEEeE
Q psy5140 50 ---------------------------------------------AGSFALSEPGSGSDAFAMK-TTATKDGNHYILNGS 83 (120)
Q Consensus 50 ---------------------------------------------~~~~~~~e~~~g~~~~~~~-~~a~~~~~g~~l~G~ 83 (120)
++|++++||.+||+..++. |++++.+|+|+|||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~~g~~~lnG~ 160 (393)
T COG1960 81 RADAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQ 160 (393)
T ss_pred hhCcchhhhHHHhccccccchHHHHHcCCHHHHHHhchhhhCCchhheeeccCCCCCcchhcCceeEEEecCCCEEEEeE
Confidence 6799999999999999987 666666666999999
Q ss_pred eeeeeCCCCCCEEEEEEEeCCC-CCCcceEEEEEeeCC
Q psy5140 84 KMWISNADIANIFLVMANVDVS-KGKVTKGLFSSIPTG 120 (120)
Q Consensus 84 k~~v~~~~~a~~~~v~a~~~~~-~~~~~~~~~~~V~~~ 120 (120)
|+|+||+..||+++|.|++++. ++..++++|+ ||.+
T Consensus 161 K~~is~~~~ad~~~v~Ar~~~~~~~~~gis~fl-V~~~ 197 (393)
T COG1960 161 KIWISNAPVADWLLVLARTDPAPGKHKGISLFL-VPKD 197 (393)
T ss_pred EEEEcCCCCCCEEEEEEEcCCcccccCceEEEE-EeCC
Confidence 9999999999999999999765 4567899999 9964
No 21
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=99.82 E-value=2.8e-19 Score=128.11 Aligned_cols=113 Identities=19% Similarity=0.317 Sum_probs=96.2
Q ss_pred chHHHHHHHHHHHHHhhCCchhhhh-----hhhcCccHHHHHHHhhcC--------------------------------
Q psy5140 7 GLGRDRLNIIAKLAKETIAPYVQKM-----ESEEKIDETVLKTLFESG-------------------------------- 49 (120)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~~l~~~G-------------------------------- 49 (120)
+++.++++.+++|+.+++.|..... ++.+.+|.+.|+.|++.|
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~~~~~ 80 (380)
T cd01152 1 PSEEAFRAEVRAWLAAHLPPELREESALGYREGREDRRRWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREEMAAAGA 80 (380)
T ss_pred CcHHHHHHHHHHHHHhcCCccccccccccccccchHHHHHHHHHHhCCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCC
Confidence 4677999999999999888766432 345678999999999998
Q ss_pred -------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCCC
Q psy5140 50 -------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 92 (120)
Q Consensus 50 -------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~ 92 (120)
+.+++++|+.+|++...+.++++++++||+|||+|.|+|++..
T Consensus 81 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~L~G~K~~it~~~~ 160 (380)
T cd01152 81 PVPFNQIGIDLAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAHY 160 (380)
T ss_pred CcccchhhHHHHHHHHHHhCCHHHHHHHhHHHhCCchhheeecCCCCCCcchhhCeeeEEEcCCeEEEecEEEEEcCccc
Confidence 5788999999999999999999999999999999999999999
Q ss_pred CCEEEEEEEeCCC-CCCcceEEEEEeeCC
Q psy5140 93 ANIFLVMANVDVS-KGKVTKGLFSSIPTG 120 (120)
Q Consensus 93 a~~~~v~a~~~~~-~~~~~~~~~~~V~~~ 120 (120)
||+++|.++.+++ ++..++++|+ ||++
T Consensus 161 ad~~lv~a~~~~~~~~~~~~~~~l-Vp~~ 188 (380)
T cd01152 161 ADWAWLLVRTDPEAPKHRGISILL-VDMD 188 (380)
T ss_pred cCEEEEEEEeCCCccCcCCeEEEE-EeCC
Confidence 9999999997543 2235688999 9964
No 22
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=99.80 E-value=2.2e-19 Score=94.68 Aligned_cols=52 Identities=56% Similarity=0.871 Sum_probs=47.1
Q ss_pred EEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCCCCCEEEEEEEeC
Q psy5140 52 SFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVD 103 (120)
Q Consensus 52 ~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~~~v~a~~~ 103 (120)
|++++||.+|+++..+++++++.+++|+|||+|.||+++..||+++|+||++
T Consensus 1 ~~a~tE~~~g~d~~~~~t~a~~~~~~~~L~G~K~~v~~~~~a~~~~v~ar~d 52 (52)
T PF02770_consen 1 AFALTEPGAGSDLAAVETTARRDGDGYVLNGEKRFVSNAPDADWFLVFARTD 52 (52)
T ss_dssp EEE--BTTBSSSGGG-SSEEEEETTEEEEEEEEEEEETTTTESEEEEEEEES
T ss_pred CEEEcCCCCCCCcccCEEEeecccceEEEeeEEEEECCcCccCEEEEEEEEC
Confidence 6899999999999999999999999999999999999999999999999973
No 23
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=99.79 E-value=2.2e-18 Score=129.93 Aligned_cols=110 Identities=28% Similarity=0.439 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHhhCCchhhhhhhhcCc---------c---HHHHHHHhhcC---------------------------
Q psy5140 9 GRDRLNIIAKLAKETIAPYVQKMESEEKI---------D---ETVLKTLFESG--------------------------- 49 (120)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------~---~~~~~~l~~~G--------------------------- 49 (120)
..++++.+++|+++.+.|...+.|+++.+ | .+.|+.+.+.|
T Consensus 60 ~~~il~~a~~fa~~~~~p~~~~~D~~~~~~~~~g~v~~p~g~~e~~~~l~e~G~~~l~~Pee~GG~Gl~~~~~~~~~E~~ 139 (622)
T PTZ00456 60 MDSLLEEASKLATQTLLPLYESSDSEGCVLLKDGNVTTPKGFKEAYQALKAGGWTGISEPEEYGGQALPLSVGFITRELM 139 (622)
T ss_pred HHHHHHHHHHHHHHhcccchhhHhhccCccccCCcccCChhHHHHHHHHHHcCCCCCCCCcccCCCCcCHHHHHHHHHHH
Confidence 46789999999999999988777766533 5 58999999998
Q ss_pred ------------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCC-EEEEEeEeee
Q psy5140 50 ------------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGN-HYILNGSKMW 86 (120)
Q Consensus 50 ------------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~-g~~l~G~k~~ 86 (120)
+++++++||++||++..+.|+|+++++ +|+|||+|.|
T Consensus 140 ~~a~~~~~~~~~l~~ga~~~L~~~Gs~eqk~~~Lp~l~sGe~~~t~alTEp~aGSD~~~l~T~A~~~gdG~y~L~G~K~f 219 (622)
T PTZ00456 140 ATANWGFSMYPGLSIGAANTLMAWGSEEQKEQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKITGTKIF 219 (622)
T ss_pred HHhchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCChhhhhhccCCccCCCcccCeeEEEECCCCcEEEeeEEEE
Confidence 678999999999999999999999876 5999999999
Q ss_pred eeCCCCC----CEEEEEEEeCCC-CCCcceEEEEEeeC
Q psy5140 87 ISNADIA----NIFLVMANVDVS-KGKVTKGLFSSIPT 119 (120)
Q Consensus 87 v~~~~~a----~~~~v~a~~~~~-~~~~~~~~~~~V~~ 119 (120)
||++.++ ++++|+||+++. ++..++++|+ ||+
T Consensus 220 It~g~~~~~~n~~~lVlAr~~~~~~g~~GiSlFl-Vp~ 256 (622)
T PTZ00456 220 ISAGDHDLTENIVHIVLARLPNSLPTTKGLSLFL-VPR 256 (622)
T ss_pred ecCCchhhccCcEEEEEEEecCCCCCCCceEEEE-EeC
Confidence 9999873 678999998754 4567899999 996
No 24
>PLN02636 acyl-coenzyme A oxidase
Probab=99.78 E-value=2.1e-18 Score=131.14 Aligned_cols=115 Identities=24% Similarity=0.392 Sum_probs=94.0
Q ss_pred CCCchHHHHHHHHHHHHHhhC---CchhhhhhhhcCcc-HHHHHHHhhcC------------------------------
Q psy5140 4 AYKGLGRDRLNIIAKLAKETI---APYVQKMESEEKID-ETVLKTLFESG------------------------------ 49 (120)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~-~~~~~~l~~~G------------------------------ 49 (120)
.+++++.++++.+++|+++.. .+....+++.+.++ .++++.+++.|
T Consensus 60 ~l~~~~~~~r~~v~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~e~l~~~d~s~~~ 139 (686)
T PLN02636 60 YMRGKHRDIQEKIYEFFNSRPDLQTPVEISKDEHRELCMRQLTGLVREAGIRPMKYLVEDPAKYFAITEAVGSVDMSLGI 139 (686)
T ss_pred hcCCcHHHHHHHHHHHHHhCccccCCchhhHHHhhhhHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHhhchhhHH
Confidence 356777889999999998663 55555566666777 67777766655
Q ss_pred ----------------------------------ceEEEeeCCCCCCCCCcceeEEEEe--CCEEEEE-----eEeeeee
Q psy5140 50 ----------------------------------AGSFALSEPGSGSDAFAMKTTATKD--GNHYILN-----GSKMWIS 88 (120)
Q Consensus 50 ----------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~--~~g~~l~-----G~k~~v~ 88 (120)
++|+++||+++|||+..++|+|+++ +++|+|| |+|+||+
T Consensus 140 ~~~vh~~l~~~~I~~~GTeeQk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~~defVLntP~~~g~K~wI~ 219 (686)
T PLN02636 140 KLGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDPLTDEFVINTPNDGAIKWWIG 219 (686)
T ss_pred HHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCChhhhhhccCCCcccCcccCeeEEEEcCCCCeEEECCCCCCeEEEeec
Confidence 7899999999999999999999987 6889999 9999999
Q ss_pred CCCC-CCEEEEEEEeCCC------CCCcceEEEEEeeC
Q psy5140 89 NADI-ANIFLVMANVDVS------KGKVTKGLFSSIPT 119 (120)
Q Consensus 89 ~~~~-a~~~~v~a~~~~~------~~~~~~~~~~~V~~ 119 (120)
|++. ||+++|+|++... ++..|+++|+ ||.
T Consensus 220 na~~~ad~~vV~Arl~~~~~~~~~~~~~Gi~~Fl-Vp~ 256 (686)
T PLN02636 220 NAAVHGKFATVFARLKLPTHDSKGVSDMGVHAFI-VPI 256 (686)
T ss_pred CCcccCCEEEEEEEecCCCCCccCCCCCCeeEEE-Eec
Confidence 9976 9999999998621 1256899999 985
No 25
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=99.78 E-value=1.6e-17 Score=116.50 Aligned_cols=113 Identities=35% Similarity=0.544 Sum_probs=94.8
Q ss_pred chHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhc-C-------------------------ceEEEeeCCCC
Q psy5140 7 GLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFES-G-------------------------AGSFALSEPGS 60 (120)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~-G-------------------------~~~~~~~e~~~ 60 (120)
+++.++++.+++|+.+++.+.....++....+.+.++.++.. . +++++++|+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~ 80 (327)
T cd00567 1 EEQRELRDSAREFAAEELEPYARERRETPEEPWELLAELGLLLGAALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGA 80 (327)
T ss_pred ChHHHHHHHHHHHHHHhccccHHhHHhhCCCCHHHHHHHHHHhchHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCC
Confidence 357789999999999998888777666666676666666652 1 78999999999
Q ss_pred CCCCCcceeEEEEeCCEEEEEeEeeeeeCCCCCCEEEEEEEeCCCC-CCcceEEEEEeeCC
Q psy5140 61 GSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSK-GKVTKGLFSSIPTG 120 (120)
Q Consensus 61 g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~~~v~a~~~~~~-~~~~~~~~~~V~~~ 120 (120)
|++...+.+++++.++||+|||+|+|++++..||+++|.++.+..+ +..+..+|+ ||++
T Consensus 81 gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~~~~~~~~~~~~~~l-vp~~ 140 (327)
T cd00567 81 GSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADLFIVLARTDEEGPGHRGISAFL-VPAD 140 (327)
T ss_pred CCchhhCEeEEEEeCCEEEEEEEEEEecCCccCCEEEEEEEeCCCCCCCCceEEEE-EeCC
Confidence 9999999999999999999999999999999999999999986432 345688899 9964
No 26
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=99.78 E-value=5.7e-18 Score=122.47 Aligned_cols=107 Identities=30% Similarity=0.471 Sum_probs=90.3
Q ss_pred HHHHHHHHHhhCCchhhhhhhhcC--------cc---HHHHHHHhhcC--------------------------------
Q psy5140 13 LNIIAKLAKETIAPYVQKMESEEK--------ID---ETVLKTLFESG-------------------------------- 49 (120)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~d~~~~--------~~---~~~~~~l~~~G-------------------------------- 49 (120)
++.+++|+.+.+.|.+.+.|++.. || .++|++|++.|
T Consensus 2 ~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~p~~~~e~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~ 81 (407)
T cd01153 2 LEEVARLAENVLAPLNADGDREGPVFDDGRVVVPPPFKEALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIFSRGDA 81 (407)
T ss_pred hHHHHHHHHHHhhhhHHhHhccCCcccCCceEcChhHHHHHHHHHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhH
Confidence 678999999889988877776653 88 67899999998
Q ss_pred ------------------------------------ceEEEeeCCCCCCCCCcceeEEEEe-CCEEEEEeEeeeeeCCCC
Q psy5140 50 ------------------------------------AGSFALSEPGSGSDAFAMKTTATKD-GNHYILNGSKMWISNADI 92 (120)
Q Consensus 50 ------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~-~~g~~l~G~k~~v~~~~~ 92 (120)
+.|+++|||.+||+...+.++++++ +|||+|||+|.|+|++..
T Consensus 82 s~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~ggy~l~G~K~~is~~~~ 161 (407)
T cd01153 82 PLMYASGTQGAAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFISAGEH 161 (407)
T ss_pred HHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCCcccceEEEEECCCCcEEEeeEEEEEeCCCc
Confidence 7899999999999999999999998 578999999999999988
Q ss_pred C----CEEEEEEEeCCC-CCCcceEEEEEeeCC
Q psy5140 93 A----NIFLVMANVDVS-KGKVTKGLFSSIPTG 120 (120)
Q Consensus 93 a----~~~~v~a~~~~~-~~~~~~~~~~~V~~~ 120 (120)
| ++++|.+++++. ++..++++|+ ||++
T Consensus 162 a~~~~~~~~v~a~~~~~~~~~~~~~~fl-Vp~~ 193 (407)
T cd01153 162 DMSENIVHLVLARSEGAPPGVKGLSLFL-VPKF 193 (407)
T ss_pred ccccccEEEEEEeCCCCCCCCCceEEEE-Eecc
Confidence 6 588899987542 2345788999 9964
No 27
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=99.78 E-value=1.3e-17 Score=120.08 Aligned_cols=111 Identities=24% Similarity=0.415 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHhhCCchhhhhhhh-----------cCccHHHHHHHhhcC----------------------------
Q psy5140 9 GRDRLNIIAKLAKETIAPYVQKMESE-----------EKIDETVLKTLFESG---------------------------- 49 (120)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~d~~-----------~~~~~~~~~~l~~~G---------------------------- 49 (120)
.+++++.+|+|+++++.|...+.|+. ..+++++|+.++++|
T Consensus 3 ~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~P~~~GG~g~~~~~~~~v~e~l~ 82 (394)
T cd01155 3 AQELRARVKAFMEEHVYPAEQEFLEYYAEGGDRWWTPPPIIEKLKAKAKAEGLWNLFLPEVSGLSGLTNLEYAYLAEETG 82 (394)
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHhhcccccccccCCchhHHHHHHHHHhCCCCCCCCChhhCCCCcCHHHHHHHHHHHh
Confidence 56799999999999999877666542 223468999999998
Q ss_pred -------------------------------------------ceEEEeeCCC-CCCCCCcceeEEEEeCCEEEEEeEee
Q psy5140 50 -------------------------------------------AGSFALSEPG-SGSDAFAMKTTATKDGNHYILNGSKM 85 (120)
Q Consensus 50 -------------------------------------------~~~~~~~e~~-~g~~~~~~~~~a~~~~~g~~l~G~k~ 85 (120)
+++++++||. .|++...+.++++++++||+|||+|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE~~~~gsd~~~~~t~a~~~~~g~~LnG~k~ 162 (394)
T cd01155 83 RSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRKW 162 (394)
T ss_pred hhcccchheeecccccccHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCCCchhhCEEEEEEECCEEEEEEEEE
Confidence 6789999997 67888889999999999999999999
Q ss_pred eeeCCCC--CCEEEEEEEeCCC--CCCcceEEEEEeeCC
Q psy5140 86 WISNADI--ANIFLVMANVDVS--KGKVTKGLFSSIPTG 120 (120)
Q Consensus 86 ~v~~~~~--a~~~~v~a~~~~~--~~~~~~~~~~~V~~~ 120 (120)
|+|++.+ +++++|.++++.+ ++..++++|+ ||++
T Consensus 163 ~vs~~~~~~a~~~~v~a~~~~~~~~~~~~~~~fl-Vp~~ 200 (394)
T cd01155 163 WSSGAGDPRCKIAIVMGRTDPDGAPRHRQQSMIL-VPMD 200 (394)
T ss_pred EEcCCCCCCCCEEEEEEEeCCCcCCCCCceEEEE-EeCC
Confidence 9999955 8899999987543 2235788999 9974
No 28
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=99.75 E-value=2e-17 Score=120.08 Aligned_cols=69 Identities=35% Similarity=0.433 Sum_probs=62.5
Q ss_pred ceEEEeeCCCCCCCCCcceeEEEEe-CCEEEEEeEeeeeeCCCCCCEEEEEEEeCCC-CCCcceEEEEEeeCC
Q psy5140 50 AGSFALSEPGSGSDAFAMKTTATKD-GNHYILNGSKMWISNADIANIFLVMANVDVS-KGKVTKGLFSSIPTG 120 (120)
Q Consensus 50 ~~~~~~~e~~~g~~~~~~~~~a~~~-~~g~~l~G~k~~v~~~~~a~~~~v~a~~~~~-~~~~~~~~~~~V~~~ 120 (120)
++|+++|||++|||+.++.|+|+++ +++|+|||+|+|+|++ .||+++|+|++++. ++..++++|+ ||++
T Consensus 148 ~~~~~~TEp~~GSD~~~~~T~A~~~~g~~~~LnG~K~f~s~a-~Ad~~lv~Art~~~~~~~~gls~fl-Vp~~ 218 (418)
T cd01154 148 LGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAP-LADAALVLARPEGAPAGARGLSLFL-VPRL 218 (418)
T ss_pred hheeeecCCCcccchhhCeEEEEECCCCcEEEEEEEEEecCc-ccCEEEEEEECCCCCCCCCcEEEEE-Eecc
Confidence 5789999999999999999999999 8899999999999999 99999999998754 4457899999 9963
No 29
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=99.75 E-value=5.5e-17 Score=124.34 Aligned_cols=113 Identities=24% Similarity=0.254 Sum_probs=87.5
Q ss_pred CCchHHHHHHH-HHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC----------------------------------
Q psy5140 5 YKGLGRDRLNI-IAKLAKETIAPYVQKMESEEKIDETVLKTLFESG---------------------------------- 49 (120)
Q Consensus 5 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G---------------------------------- 49 (120)
++++++.+++. +++|++. .. .....++.+.+|.++|+.|++.|
T Consensus 79 Ls~ee~~~~d~~v~~l~~~-~~-~~~~~~~~~~~P~e~w~~L~e~G~~gl~IPeeyGG~Gls~~~~a~v~eeLg~~~~s~ 156 (777)
T PRK09463 79 LTAEEQAFLDGPVEELCRM-VN-DWQITHELADLPPEVWQFIKEHGFFGMIIPKEYGGLEFSAYAHSRVLQKLASRSGTL 156 (777)
T ss_pred CCHHHHHHHHHHHHHHHHH-HH-HHHHhccccCCCHHHHHHHHHCCCCcCCCchhhCCCCCCHHHHHHHHHHHHhhCcch
Confidence 67888888886 7777652 21 11222334789999999999998
Q ss_pred -------------------------------------ceEEEeeCCCCCCCCCcceeEE-----EEeCC---EEEEEeEe
Q psy5140 50 -------------------------------------AGSFALSEPGSGSDAFAMKTTA-----TKDGN---HYILNGSK 84 (120)
Q Consensus 50 -------------------------------------~~~~~~~e~~~g~~~~~~~~~a-----~~~~~---g~~l~G~k 84 (120)
++|++++||.+|||...+.+++ .++++ ||+|||+|
T Consensus 157 a~~~~v~~slg~~~lL~~~GteeQK~~yLp~La~Ge~i~afAlTEP~aGSDaa~i~Tta~~~~a~~dGd~~~g~vLNG~K 236 (777)
T PRK09463 157 AVTVMVPNSLGPGELLLHYGTDEQKDHYLPRLARGEEIPCFALTSPEAGSDAGSIPDTGVVCKGEWQGEEVLGMRLTWNK 236 (777)
T ss_pred hHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCcCCCcccccccceeeeeeecCCcccceEEEEEE
Confidence 8899999999999998887654 34444 69999999
Q ss_pred eeeeCCCCCCEEEEEEEe-CCC-----CCCcceEEEEEeeCC
Q psy5140 85 MWISNADIANIFLVMANV-DVS-----KGKVTKGLFSSIPTG 120 (120)
Q Consensus 85 ~~v~~~~~a~~~~v~a~~-~~~-----~~~~~~~~~~~V~~~ 120 (120)
.|||++..||+++|.+++ +++ ++..++++|+ ||++
T Consensus 237 ~~IT~a~~Ad~l~V~ar~~dp~~~~g~~~~~Git~fL-Vp~d 277 (777)
T PRK09463 237 RYITLAPIATVLGLAFKLYDPDGLLGDKEDLGITCAL-IPTD 277 (777)
T ss_pred EeeCCCCccCEEEEEEEecCcccccCCCCCCceEEEE-EECC
Confidence 999999999999999986 321 2346799999 9964
No 30
>PLN02876 acyl-CoA dehydrogenase
Probab=99.74 E-value=9.6e-17 Score=124.57 Aligned_cols=70 Identities=26% Similarity=0.556 Sum_probs=59.9
Q ss_pred ceEEEeeCCC-CCCCCCcceeEEEEeCCEEEEEeEeeeeeCC--CCCCEEEEEEEeCCC-CCCcceEEEEEeeCC
Q psy5140 50 AGSFALSEPG-SGSDAFAMKTTATKDGNHYILNGSKMWISNA--DIANIFLVMANVDVS-KGKVTKGLFSSIPTG 120 (120)
Q Consensus 50 ~~~~~~~e~~-~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~--~~a~~~~v~a~~~~~-~~~~~~~~~~~V~~~ 120 (120)
++|++++||+ +||+..++.|+++++++||+|||+|+|+|++ ..||+++|.++++++ ++..++++|+ ||.+
T Consensus 551 ~~~~a~tEp~~~gsd~~~~~t~a~~~g~g~vLnG~K~~vtga~~~~ad~~lv~ar~~~~~~~~~~~s~fl-V~~~ 624 (822)
T PLN02876 551 RSGFAMTEPQVASSDATNIECSIRRQGDSYVINGTKWWTSGAMDPRCRVLIVMGKTDFNAPKHKQQSMIL-VDIQ 624 (822)
T ss_pred eeEEEecCCCccCcccccceEEEEEcCCEEEEEeEEEEecCCCCCCCCEEEEEEecCCCCCCCCcceEEE-EeCC
Confidence 6799999997 7889999999999999999999999999999 469999999997533 2345688999 9864
No 31
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=99.73 E-value=1.2e-16 Score=122.26 Aligned_cols=70 Identities=30% Similarity=0.342 Sum_probs=57.4
Q ss_pred ceEEEeeCCCCCCCCCcceeEEE-----EeCC---EEEEEeEeeeeeCCCCCCEEEEEEEe-CCC-----CCCcceEEEE
Q psy5140 50 AGSFALSEPGSGSDAFAMKTTAT-----KDGN---HYILNGSKMWISNADIANIFLVMANV-DVS-----KGKVTKGLFS 115 (120)
Q Consensus 50 ~~~~~~~e~~~g~~~~~~~~~a~-----~~~~---g~~l~G~k~~v~~~~~a~~~~v~a~~-~~~-----~~~~~~~~~~ 115 (120)
++|++++||.+|||..++.++++ ++++ ||+|||+|.|||++..||+++|.++. +++ ++..++++|+
T Consensus 193 i~afAlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvLNG~K~~IT~A~~Ad~~~v~ar~~dpd~~~g~~~~~GiT~fL 272 (774)
T PRK13026 193 IPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLTWDKRYITLAPVATVLGLAFKLRDPDGLLGDKKELGITCAL 272 (774)
T ss_pred EEEEEecCCCCCCchhcccceeeeeeeeecCCccccEEEEEEEEeecCccccCEEEEEEEeeCccccccCCCCCceEEEE
Confidence 89999999999999988886654 4555 69999999999999999999888764 322 2346899999
Q ss_pred EeeCC
Q psy5140 116 SIPTG 120 (120)
Q Consensus 116 ~V~~~ 120 (120)
||++
T Consensus 273 -Vp~d 276 (774)
T PRK13026 273 -IPTD 276 (774)
T ss_pred -EECC
Confidence 9974
No 32
>KOG0137|consensus
Probab=99.68 E-value=8.4e-16 Score=112.57 Aligned_cols=70 Identities=49% Similarity=0.745 Sum_probs=61.2
Q ss_pred ceEEEeeCCCCCCCCCcceeEEEEe--CCEEEEEeEeeeeeCCCCCCEEEEEEEeCCC--C--CCcceEEEEEeeCC
Q psy5140 50 AGSFALSEPGSGSDAFAMKTTATKD--GNHYILNGSKMWISNADIANIFLVMANVDVS--K--GKVTKGLFSSIPTG 120 (120)
Q Consensus 50 ~~~~~~~e~~~g~~~~~~~~~a~~~--~~g~~l~G~k~~v~~~~~a~~~~v~a~~~~~--~--~~~~~~~~~~V~~~ 120 (120)
+.+++++||..|||.....|+++.. ++.|+|||.|.||+|++.||+++|+|++..+ + ..+++++|+ |+++
T Consensus 193 ~~A~altE~s~Gsdaas~~~~a~~s~dg~~y~LNG~Kiwisn~g~Adif~VfAqt~~~~~~g~~k~k~T~Fl-ver~ 268 (634)
T KOG0137|consen 193 IAAFALTEPSSGSDAASGRTTATLSPDGKHYVLNGSKIWISNGGLADIFTVFAQTEVDPADGEVKRKITAFL-VERD 268 (634)
T ss_pred cceEEEecCCCCcccccceeeeeecCCCCeEEEcCeeEEEecCccceeeeeeeccccCCCCccccCceEEEE-Eecc
Confidence 8999999999999999999999865 4559999999999999999999999999733 2 246799999 9875
No 33
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=99.68 E-value=8.6e-16 Score=110.01 Aligned_cols=98 Identities=26% Similarity=0.253 Sum_probs=81.0
Q ss_pred HHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC----------------------------------------------
Q psy5140 16 IAKLAKETIAPYVQKMESEEKIDETVLKTLFESG---------------------------------------------- 49 (120)
Q Consensus 16 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G---------------------------------------------- 49 (120)
++.+.+ .+.+...+.|+.+.+|.+.|+.|++.|
T Consensus 3 ~~~~~~-~~~~~a~~~d~~~~~p~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~ 81 (377)
T cd01163 3 ARPLAA-RIAEGAAERDRQRGLPYEEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHFGFVE 81 (377)
T ss_pred HHHHHH-HHhhhhhhhhhcCCCCHHHHHHHHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 556665 577778888999999999999999998
Q ss_pred ----------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCCCCCEEEEEEEeCCCCC
Q psy5140 50 ----------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKG 107 (120)
Q Consensus 50 ----------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~~~v~a~~~~~~~ 107 (120)
+.+.+++|+++++ ...+.+++.++++||+|||+|.|+|++..||+++|.+++++
T Consensus 82 ~l~~~g~~~~~~~~l~~~~~g~~~~~a~tE~~~~~-~~~~~~~~~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~~--- 157 (377)
T cd01163 82 ALLLAGPEQFRKRWFGRVLNGWIFGNAVSERGSVR-PGTFLTATVRDGGGYVLNGKKFYSTGALFSDWVTVSALDEE--- 157 (377)
T ss_pred HHHhcCcHHHHHHHHHHHhCCCeEEEeecCCCCCC-CCCceEEEEecCCEEEEeceEEeecCCccceEEEEEEEcCC---
Confidence 5667899998765 55666777788899999999999999999999999998642
Q ss_pred CcceEEEEEeeCC
Q psy5140 108 KVTKGLFSSIPTG 120 (120)
Q Consensus 108 ~~~~~~~~~V~~~ 120 (120)
.++.+|+ ||.+
T Consensus 158 -~~~~~~l-V~~~ 168 (377)
T cd01163 158 -GKLVFAA-VPTD 168 (377)
T ss_pred -CcEEEEE-EeCC
Confidence 3467888 9864
No 34
>PLN02312 acyl-CoA oxidase
Probab=99.65 E-value=1.3e-15 Score=115.97 Aligned_cols=68 Identities=26% Similarity=0.481 Sum_probs=61.5
Q ss_pred ceEEEeeCCCCCCCCCcceeEEEEe--CCEEEEE-----eEeeeeeCC-CCCCEEEEEEEeCCCCCCcceEEEEEee
Q psy5140 50 AGSFALSEPGSGSDAFAMKTTATKD--GNHYILN-----GSKMWISNA-DIANIFLVMANVDVSKGKVTKGLFSSIP 118 (120)
Q Consensus 50 ~~~~~~~e~~~g~~~~~~~~~a~~~--~~g~~l~-----G~k~~v~~~-~~a~~~~v~a~~~~~~~~~~~~~~~~V~ 118 (120)
++|+++||+++|||+.+++|+|+++ +++|+|| |+|+|++|+ ..|++++|+|++...++..|+++|+ ||
T Consensus 186 ig~fA~TEpghGSdv~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~~~vV~Arl~~~~~~~Gv~~Fl-V~ 261 (680)
T PLN02312 186 KGCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQLHINGKNEGVHAFI-AQ 261 (680)
T ss_pred eeEeeecCCCcCcchhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccCCEEEEEEEECCCCCCCCeEEEE-Ee
Confidence 8999999999999999999999987 4779999 799999999 6899999999987544567899999 98
No 35
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=99.57 E-value=1.4e-14 Score=107.80 Aligned_cols=64 Identities=25% Similarity=0.314 Sum_probs=57.8
Q ss_pred ceEEEeeCCCCCCCCCcceeEEEEe-CCEEEEEeEeeeeeCCCCCCEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 50 AGSFALSEPGSGSDAFAMKTTATKD-GNHYILNGSKMWISNADIANIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 50 ~~~~~~~e~~~g~~~~~~~~~a~~~-~~g~~l~G~k~~v~~~~~a~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
++++++|||++|||+..++|+|++. +|+|+|||+|+|+| +..||+++|.|+++ .|+++|+ ||++
T Consensus 179 ~~~~a~TEp~~GSDv~~~~T~A~~~~gg~w~LnG~K~fiS-a~~AD~~lVlArt~-----~Gls~Fl-Vp~~ 243 (538)
T PRK11561 179 LIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHKWFFS-VPQSDAHLVLAQAK-----GGLSCFF-VPRF 243 (538)
T ss_pred eeEEEecCCCCCCchhhCeeEEEECCCCeEEEEEEEEEEE-chhhCEEEEEEEEC-----CceEEEE-EECC
Confidence 4689999999999999999999994 67799999999999 68899999999985 4799999 9974
No 36
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=99.56 E-value=6.4e-15 Score=105.34 Aligned_cols=103 Identities=22% Similarity=0.243 Sum_probs=76.4
Q ss_pred HHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC----------------------------------------------
Q psy5140 16 IAKLAKETIAPYVQKMESEEKIDETVLKTLFESG---------------------------------------------- 49 (120)
Q Consensus 16 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G---------------------------------------------- 49 (120)
++.+.+ .+++.+.+.|+++.+|.+.|+.|++.|
T Consensus 3 ~~~~~~-~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~~~~~ 81 (370)
T cd01159 3 AEDLAP-LIRERAPEAERARRLPDEVVRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVATHSR 81 (370)
T ss_pred HHHHHH-HHHHhHHHHHHcCCCCHHHHHHHHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence 445555 577888889999999999999999998
Q ss_pred -c--e------EEEeeCCC-CCCCCCcceeEEEEeCCEEEEEeEeeeeeCCCCCCEEEEEEEeCCCCCCcceEEEEEeeC
Q psy5140 50 -A--G------SFALSEPG-SGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGKVTKGLFSSIPT 119 (120)
Q Consensus 50 -~--~------~~~~~e~~-~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~~~v~a~~~~~~~~~~~~~~~~V~~ 119 (120)
+ . .....++. ..++...+.++|+++++||+|||+|.|||++..+|+++|.+++++.++..++++|+ ||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~t~A~~~~~gy~lnG~K~~it~~~~ad~~~v~a~~~~~~~~~~~~~~l-V~~ 160 (370)
T cd01159 82 MLAAFPPEAQEEVWGDGPDTLLAGSYAPGGRAERVDGGYRVSGTWPFASGCDHADWILVGAIVEDDDGGPLPRAFV-VPR 160 (370)
T ss_pred HHHhCCHHHHHHHhCCCCCceEEeeecCCceeEEeCCeEEEeccccCccCCCcCceeEeeeECCCCCCCCcceEEE-EEh
Confidence 0 0 00012221 11122346678889999999999999999999999999999976443456789999 996
Q ss_pred C
Q psy5140 120 G 120 (120)
Q Consensus 120 ~ 120 (120)
+
T Consensus 161 ~ 161 (370)
T cd01159 161 A 161 (370)
T ss_pred H
Confidence 3
No 37
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=99.52 E-value=7.6e-14 Score=105.89 Aligned_cols=68 Identities=31% Similarity=0.463 Sum_probs=61.0
Q ss_pred ceEEEeeCCCCCCCCCcceeEEEEe--CCEEEEE-----eEeeeeeC-CCCCCEEEEEEEeCCCCCCcceEEEEEee
Q psy5140 50 AGSFALSEPGSGSDAFAMKTTATKD--GNHYILN-----GSKMWISN-ADIANIFLVMANVDVSKGKVTKGLFSSIP 118 (120)
Q Consensus 50 ~~~~~~~e~~~g~~~~~~~~~a~~~--~~g~~l~-----G~k~~v~~-~~~a~~~~v~a~~~~~~~~~~~~~~~~V~ 118 (120)
++|++++||++|||+.+++|+|+.+ +++|+|| |+|+|++| +..|++++|+|++...++..|+++|+ ||
T Consensus 128 ig~~A~TEpghGSdv~~leTtAt~d~~~defvLntPt~~g~K~wi~~~g~~A~~~vV~Arl~~~~~~~Gi~~Fl-V~ 203 (646)
T PTZ00460 128 VGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEAVKFWPGELGFLCNFALVYAKLIVNGKNKGVHPFM-VR 203 (646)
T ss_pred heeeeecCCCccCCcccceEEEEEcCCCCEEEECCCCCCeEEEccCCCCCCCCEEEEEEEECcCCCCCceEEEE-Ee
Confidence 8999999999999999999999974 6789998 99999998 57899999999986544557899999 98
No 38
>PLN02443 acyl-coenzyme A oxidase
Probab=99.48 E-value=2.9e-13 Score=103.00 Aligned_cols=69 Identities=25% Similarity=0.370 Sum_probs=61.6
Q ss_pred ceEEEeeCCCCCCCCCcceeEEEEe--CCEEEEE-----eEeeeeeCC-CCCCEEEEEEEeCCCCCCcceEEEEEeeC
Q psy5140 50 AGSFALSEPGSGSDAFAMKTTATKD--GNHYILN-----GSKMWISNA-DIANIFLVMANVDVSKGKVTKGLFSSIPT 119 (120)
Q Consensus 50 ~~~~~~~e~~~g~~~~~~~~~a~~~--~~g~~l~-----G~k~~v~~~-~~a~~~~v~a~~~~~~~~~~~~~~~~V~~ 119 (120)
++|++++|+++|||+..++|+|+.+ +++|+|| |+|+|++|+ ..|++++|+|+....++..|+++|+ ||.
T Consensus 132 ig~fA~TE~ghGSdv~~leTtAt~d~~~~efvIntP~~~g~K~wig~~~~~A~~~vV~Arl~~~~~~~Gv~~Fl-Vp~ 208 (664)
T PLN02443 132 IGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITNGKDHGIHGFI-VQL 208 (664)
T ss_pred heEEEecCCCcccchhhCeEEEEEeCCCCEEEECCCCCCEEEEeecCCcccCCEEEEEEEECCCCCCCCeEEEE-Eec
Confidence 8999999999999999999999987 6789998 999999997 5799999999986544557899999 994
No 39
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=99.47 E-value=2.7e-13 Score=102.56 Aligned_cols=69 Identities=30% Similarity=0.441 Sum_probs=61.8
Q ss_pred ceEEEeeCCCCCCCCCcceeEEEEeC--CEEEEE-----eEeeeeeCCCC-CCEEEEEEEeCCCCCCcceEEEEEeeC
Q psy5140 50 AGSFALSEPGSGSDAFAMKTTATKDG--NHYILN-----GSKMWISNADI-ANIFLVMANVDVSKGKVTKGLFSSIPT 119 (120)
Q Consensus 50 ~~~~~~~e~~~g~~~~~~~~~a~~~~--~g~~l~-----G~k~~v~~~~~-a~~~~v~a~~~~~~~~~~~~~~~~V~~ 119 (120)
++|++++|+++|||+..++|+|+.++ ++|+|| |+|+|++|++. |++++|+|+....++..|+++|+ ||.
T Consensus 135 ig~~a~TE~ghGSdv~~leTtAt~d~~t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl~~~g~~~Gv~~Fl-Vp~ 211 (610)
T cd01150 135 IGCFAQTELGHGSNLQGLETTATYDPLTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITPGKNHGLHAFI-VPI 211 (610)
T ss_pred heeeeccccCcCcCcccceeEEEECCCCCeEEECCCCCCceEECccCcccCCCEEEEEEEeccCCCCCCeEEEE-Eec
Confidence 89999999999999999999999887 889999 99999999865 99999999986444457899999 993
No 40
>KOG1469|consensus
Probab=99.40 E-value=1.3e-12 Score=88.86 Aligned_cols=70 Identities=30% Similarity=0.600 Sum_probs=62.5
Q ss_pred ceEEEeeCCC-CCCCCCcceeEEEEeCCEEEEEeEeeeeeCCCC--CCEEEEEEEeCCC--CCCcceEEEEEeeCC
Q psy5140 50 AGSFALSEPG-SGSDAFAMKTTATKDGNHYILNGSKMWISNADI--ANIFLVMANVDVS--KGKVTKGLFSSIPTG 120 (120)
Q Consensus 50 ~~~~~~~e~~-~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~--a~~~~v~a~~~~~--~~~~~~~~~~~V~~~ 120 (120)
..||+++||+ +.||..+++++.+++++.|+|||+|||+||+.+ |.+.+++.+++.. +.+..+++++ ||.+
T Consensus 114 rScFaMTEP~VASSDATNIe~SI~r~~~~YvINg~KWw~sga~~PkCrv~i~mGkt~~~~~~rhkQqSmiL-VpM~ 188 (392)
T KOG1469|consen 114 RSCFAMTEPDVASSDATNIECSIRRDGDSYVINGKKWWISGAGDPKCRIAIFMGKTDNTSASRHKQQSMIL-VPMN 188 (392)
T ss_pred eeeEeecCCcccccccccceEEEEEcCCEEEEecceeeecCCCCCceEEEEEecccCCCccchhhcccEEE-EecC
Confidence 7999999999 888999999999999999999999999999965 8999999999865 3456789999 9964
No 41
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=99.30 E-value=2.1e-11 Score=90.61 Aligned_cols=68 Identities=29% Similarity=0.346 Sum_probs=56.5
Q ss_pred ceEEEeeCCCCCCCCCcceeEEEEe-CCEEEEEeEeeeeeCCCCCCEEEEEEEeCCC----CC---CcceEEEEEeeCC
Q psy5140 50 AGSFALSEPGSGSDAFAMKTTATKD-GNHYILNGSKMWISNADIANIFLVMANVDVS----KG---KVTKGLFSSIPTG 120 (120)
Q Consensus 50 ~~~~~~~e~~~g~~~~~~~~~a~~~-~~g~~l~G~k~~v~~~~~a~~~~v~a~~~~~----~~---~~~~~~~~~V~~~ 120 (120)
+.+++++| .+|||+..+.|++++. +|+|+|||+|.|+ ++..||+++|+|++++. .+ ..++++|+ ||++
T Consensus 135 i~A~AltE-~aGSD~a~i~TtA~~~~gg~wvLNG~K~~t-~g~~Ad~~lV~Art~~~~~~~~g~~~~~git~Fl-V~~d 210 (520)
T PTZ00457 135 MMGWATEE-GCGSDISMNTTKASLTDDGSYVLTGQKRCE-FAASATHFLVLAKTLTQTAAEEGATEVSRNSFFI-CAKD 210 (520)
T ss_pred EEEEEeCC-CCCCccccceeEEEEcCCCeEEEEEEEEEE-cCchhcEEEEEeecCCcccccccccCcCceEEEE-EECC
Confidence 78999988 8999999999999986 5579999999965 89999999999997531 11 24689999 9964
No 42
>KOG0135|consensus
Probab=98.81 E-value=1e-08 Score=75.66 Aligned_cols=68 Identities=35% Similarity=0.503 Sum_probs=59.9
Q ss_pred ceEEEeeCCCCCCCCCcceeEEEEe--CCEEEEE-----eEeeeeeCCCC-CCEEEEEEEeCCCCCCcceEEEEEee
Q psy5140 50 AGSFALSEPGSGSDAFAMKTTATKD--GNHYILN-----GSKMWISNADI-ANIFLVMANVDVSKGKVTKGLFSSIP 118 (120)
Q Consensus 50 ~~~~~~~e~~~g~~~~~~~~~a~~~--~~g~~l~-----G~k~~v~~~~~-a~~~~v~a~~~~~~~~~~~~~~~~V~ 118 (120)
.+||+++|.+|||+...++|||+-+ .+.|+|| ..|+||.|++. |++.+|+|+....+...|+.-|+ ||
T Consensus 157 ~gcfamTEl~HGSNt~~I~TtatyDP~t~EfVinTP~~~A~K~WiGn~a~~athavvfa~L~~~g~n~G~H~Fi-iq 232 (661)
T KOG0135|consen 157 KGCFAMTELGHGSNTKGIQTTATYDPTTEEFVINTPDFSAIKCWIGNAAKHATHAVVFAQLHVPGQNHGLHGFI-IQ 232 (661)
T ss_pred eeeEEEeeecCCccccceeeeeeecCCCCeeEecCCcHHHHHHHhccccccceEEEEEEEeeecCccCceeeEE-EE
Confidence 8999999999999999999999854 6779996 78999999965 99999999986555567889999 87
No 43
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
Probab=98.29 E-value=3.1e-07 Score=55.08 Aligned_cols=58 Identities=21% Similarity=0.237 Sum_probs=50.7
Q ss_pred CchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcCceEEEeeCCCCCCC
Q psy5140 6 KGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESGAGSFALSEPGSGSD 63 (120)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~~~e~~~g~~ 63 (120)
|+++++|++.+++|+++++.|...+.|+++.+|.++|+.|++.|+....+.+.-+|.+
T Consensus 1 t~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~~p~~~GG~~ 58 (113)
T PF02771_consen 1 TEEQQALREEAREFAEEEIAPHAAEWDEDGRFPREVWRALGEAGLLGLAVPEEYGGLG 58 (113)
T ss_dssp SHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCHHHHHHHHHHTTTTSTTSCGGGTSEB
T ss_pred CHHHHHHHHHHHHHHHHHchHHHHHHHHhCCCCHHHHHHHHHHHHhhhhccccccCcc
Confidence 5788999999999999999999999988889999999999999988877776656544
No 44
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=98.14 E-value=2.7e-06 Score=63.19 Aligned_cols=69 Identities=22% Similarity=0.262 Sum_probs=47.3
Q ss_pred ceEEEeeCCCCCCCC-----Ccce--eEE-EEeCCEEEEEeEeeeeeCCCCCCEEEEEEEeCCCCCC-cc--eEEEEEee
Q psy5140 50 AGSFALSEPGSGSDA-----FAMK--TTA-TKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGK-VT--KGLFSSIP 118 (120)
Q Consensus 50 ~~~~~~~e~~~g~~~-----~~~~--~~a-~~~~~g~~l~G~k~~v~~~~~a~~~~v~a~~~~~~~~-~~--~~~~~~V~ 118 (120)
..+-+++.|...-.. ..+. ... .++++||+|||.|.|+|++ .||.++|++++...++. .+ .++|+ ||
T Consensus 142 ~~~~a~~dp~~dRs~~~~~~~d~~~~~~Vve~~~dGiVV~GaK~~~T~~-~ad~~~V~~~~~~~~~~~~~~ya~~F~-VP 219 (477)
T TIGR02309 142 ALTHALTNPQVNRAKPPSEQPDPYIALGVVEQTDKGVIVRGARMTATFP-IADEILIFPSTVLKAGAEKDPYALAFA-IP 219 (477)
T ss_pred eeeccccCCCCCCCCChhhcCCCCcceeEEEEcCCCEEEeCHHHhhhhc-ccceEEEeccCCCCCccCCCCeEEEEE-ee
Confidence 566677777522121 1122 233 4678999999999999997 99999999987653222 23 68888 99
Q ss_pred CC
Q psy5140 119 TG 120 (120)
Q Consensus 119 ~~ 120 (120)
.|
T Consensus 220 ~d 221 (477)
T TIGR02309 220 TN 221 (477)
T ss_pred CC
Confidence 75
No 45
>KOG0136|consensus
Probab=98.06 E-value=9.6e-06 Score=61.27 Aligned_cols=78 Identities=24% Similarity=0.301 Sum_probs=62.9
Q ss_pred HHHHHHhhcC----ceEEEeeCCCCCCCCCcceeEEEEe--CCEEEE-----EeEeeeeeCCCC-CCEEEEEEEeCCCCC
Q psy5140 40 TVLKTLFESG----AGSFALSEPGSGSDAFAMKTTATKD--GNHYIL-----NGSKMWISNADI-ANIFLVMANVDVSKG 107 (120)
Q Consensus 40 ~~~~~l~~~G----~~~~~~~e~~~g~~~~~~~~~a~~~--~~g~~l-----~G~k~~v~~~~~-a~~~~v~a~~~~~~~ 107 (120)
+.-++|...+ ++|.+-+|.+||++++.++|+|+-+ -+.|+| +..|||..+-+. |++.+|.|+....+.
T Consensus 130 Q~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~LET~AtyD~~T~eFVl~TPt~ta~KWWPGgLG~ssnhAvV~AqL~~~gk 209 (670)
T KOG0136|consen 130 QQEKWLSRALNMEIIGTYAQTELGHGTNLRGLETTATYDPKTQEFVLNTPTLTATKWWPGGLGKSSNHAVVVAQLITKGK 209 (670)
T ss_pred HHHHHHHhcccceEEEeehhhhhcccccccccceeeeecCCcceEEecCCCcceecccCCccccccchheeeeeeeeccc
Confidence 3444444444 8999999999999999999999844 456887 589999888765 899999999976666
Q ss_pred CcceEEEEEee
Q psy5140 108 KVTKGLFSSIP 118 (120)
Q Consensus 108 ~~~~~~~~~V~ 118 (120)
..|+..|+ ||
T Consensus 210 ~~G~h~Fi-V~ 219 (670)
T KOG0136|consen 210 CYGPHPFI-VQ 219 (670)
T ss_pred ccccceeE-EE
Confidence 78889999 98
No 46
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=96.33 E-value=0.11 Score=36.16 Aligned_cols=78 Identities=17% Similarity=0.267 Sum_probs=44.8
Q ss_pred HHHHhhcC-ceEEEeeCCCCCCCCCc------ceeEE-EEeCCEEEEEeEeeeeeCCCCCCEEEEEEEeCCCCCCcc-eE
Q psy5140 42 LKTLFESG-AGSFALSEPGSGSDAFA------MKTTA-TKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGKVT-KG 112 (120)
Q Consensus 42 ~~~l~~~G-~~~~~~~e~~~g~~~~~------~~~~a-~~~~~g~~l~G~k~~v~~~~~a~~~~v~a~~~~~~~~~~-~~ 112 (120)
++.+.+.. ..+.++..|...-.... +.... .+.++|.+|+|-|...|+++.+|.++|+-...-.++.+. -.
T Consensus 129 ~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee~~dGIvVrGAK~~~T~a~~adei~V~p~~~~~~~d~dyAv 208 (264)
T PF11794_consen 129 YEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEETDDGIVVRGAKMLATGAPYADEILVFPTRAMRPGDEDYAV 208 (264)
T ss_dssp HHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE-SSEEEEEEEEEEEETGCCSSEEEE--SSSSTTCCGGG-E
T ss_pred HHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEEcCCCEEEeChhhhhcCCcccccEEEeeccCCCCCCCceEE
Confidence 34444444 67788888862211111 23333 367899999999999999999999999865442222233 45
Q ss_pred EEEEeeCC
Q psy5140 113 LFSSIPTG 120 (120)
Q Consensus 113 ~~~~V~~~ 120 (120)
.|. ||.+
T Consensus 209 ~Fa-vP~~ 215 (264)
T PF11794_consen 209 AFA-VPMN 215 (264)
T ss_dssp EEE-EETT
T ss_pred EEE-ccCC
Confidence 566 8864
No 47
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.92 E-value=0.51 Score=35.49 Aligned_cols=83 Identities=14% Similarity=0.237 Sum_probs=49.1
Q ss_pred ccHHHHHHHhh---cC-ceEEEeeCCCCCCCC-----C--cceeEE-EEeCCEEEEEeEeeeeeCCCCCCEEEEEEEeCC
Q psy5140 37 IDETVLKTLFE---SG-AGSFALSEPGSGSDA-----F--AMKTTA-TKDGNHYILNGSKMWISNADIANIFLVMANVDV 104 (120)
Q Consensus 37 ~~~~~~~~l~~---~G-~~~~~~~e~~~g~~~-----~--~~~~~a-~~~~~g~~l~G~k~~v~~~~~a~~~~v~a~~~~ 104 (120)
|.....+.+++ .+ ..+-+++.|...-+- . .+.... .++++|.+++|-|..+|+++.+|..+|+-...-
T Consensus 129 y~~n~~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVvee~~dGIVVrGAK~~aT~~a~tdei~V~Pt~~~ 208 (493)
T COG2368 129 YHENAREYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVEETEDGIVVRGAKALATGSALTDEIFVLPTRSM 208 (493)
T ss_pred HHHHHHHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEEEecCceEEEChHHHhccccccceEEEeecccc
Confidence 44444444443 34 456667776522111 1 122233 367899999999999999999999999833322
Q ss_pred CCC-CcceEEEEEeeCC
Q psy5140 105 SKG-KVTKGLFSSIPTG 120 (120)
Q Consensus 105 ~~~-~~~~~~~~~V~~~ 120 (120)
..+ .+=-..|. ||.|
T Consensus 209 ~~~d~dfAv~Fa-iP~d 224 (493)
T COG2368 209 QEDDKDFAVAFA-IPMD 224 (493)
T ss_pred CCCCCceEEEEE-cccC
Confidence 212 22245566 8864
No 48
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=89.90 E-value=0.43 Score=36.39 Aligned_cols=70 Identities=10% Similarity=0.170 Sum_probs=42.4
Q ss_pred ceEEEeeCCCCCCCCC-----cceeEE-EEeCCEEEEEeEeeeeeCCCCCCEEEE-EEEeCCCCCCcce-EEEEEeeCC
Q psy5140 50 AGSFALSEPGSGSDAF-----AMKTTA-TKDGNHYILNGSKMWISNADIANIFLV-MANVDVSKGKVTK-GLFSSIPTG 120 (120)
Q Consensus 50 ~~~~~~~e~~~g~~~~-----~~~~~a-~~~~~g~~l~G~k~~v~~~~~a~~~~v-~a~~~~~~~~~~~-~~~~~V~~~ 120 (120)
..+-++..|...-+.. .+-... .++++|.+|+|-|...|+++.+|.++| +....-.++.... ..|. ||.|
T Consensus 151 ~~~hA~~dPk~DRsk~p~e~~D~~v~VVee~~dGIVVrGAK~~aT~a~~a~ei~V~~~~~~~~~~d~dyAvaFa-vP~d 228 (519)
T TIGR02310 151 YFNHAIVNPPIDRNKPIDQVKDVYIKIEEERDDGIVVSGAKVVATNSALTHYNFIGFGSAQIIGDNDDFALMFI-APMD 228 (519)
T ss_pred eeecceeCCCCCCCCccccCCCCceEEEEEcCCcEEEeCHHHHhcccchhcceeeccCcccccCCCCCeEEEEE-eEcC
Confidence 5666777765221111 122233 367899999999999999999999998 4433111112333 4455 8864
No 49
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=60.01 E-value=27 Score=22.54 Aligned_cols=38 Identities=24% Similarity=0.203 Sum_probs=24.2
Q ss_pred eEeeeeeCCCCCCEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 82 GSKMWISNADIANIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 82 G~k~~v~~~~~a~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
++-.|++.....++++|.|..++.+..+.+.+|+ ++.+
T Consensus 80 tsQ~fiPl~~~~~~lvvVA~~~~~Pd~~~lrAF~-~~~g 117 (165)
T PF04115_consen 80 TSQAFIPLDGSPWYLVVVAPDDDGPDPETLRAFL-APGG 117 (165)
T ss_dssp B-EEEEESBS---EEEEEEESSSS-ECCCEEEEE-E-SS
T ss_pred eeEEEEECCCCccEEEEEcCCCCCCCccceEEEE-EcCC
Confidence 6667888777555888999866555567789999 8753
No 50
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=54.54 E-value=33 Score=18.43 Aligned_cols=46 Identities=20% Similarity=0.257 Sum_probs=28.3
Q ss_pred CCCchHHHHHHHHHHHHHhhC-CchhhhhhhhcCc-----cHHHHHHHhhcC
Q psy5140 4 AYKGLGRDRLNIIAKLAKETI-APYVQKMESEEKI-----DETVLKTLFESG 49 (120)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~-----~~~~~~~l~~~G 49 (120)
.+++.|..+.+.++++..++- .|..++.-+.=.+ -...++.|.+.|
T Consensus 3 ~LT~rQ~~vL~~I~~~~~~~G~~Pt~rEIa~~~g~~S~~tv~~~L~~Le~kG 54 (65)
T PF01726_consen 3 ELTERQKEVLEFIREYIEENGYPPTVREIAEALGLKSTSTVQRHLKALERKG 54 (65)
T ss_dssp ---HHHHHHHHHHHHHHHHHSS---HHHHHHHHTSSSHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCChHHHHHHHHHHHHCc
Confidence 478999999999999998765 5666664443222 245677777766
No 51
>PF13051 DUF3912: Protein of unknown function (DUF3912)
Probab=45.23 E-value=46 Score=17.56 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=18.3
Q ss_pred EEEEeEeeeeeCCCCCCEEEEEEEe
Q psy5140 78 YILNGSKMWISNADIANIFLVMANV 102 (120)
Q Consensus 78 ~~l~G~k~~v~~~~~a~~~~v~a~~ 102 (120)
|-+.|+|.|+-.+++-+.+-+.-+.
T Consensus 2 fdi~gqkayikdgp~rnrigivk~~ 26 (68)
T PF13051_consen 2 FDIVGQKAYIKDGPYRNRIGIVKKN 26 (68)
T ss_pred ccccccEeeeccCCccceeEEEecc
Confidence 3477999999999887766655443
No 52
>PF05428 CRF-BP: Corticotropin-releasing factor binding protein (CRF-BP); InterPro: IPR008435 This family consists of several eukaryotic corticotropin-releasing factor binding proteins (CRF-BP or CRH-BP). Corticotropin-releasing hormone (CRH) plays multiple roles in vertebrate species. In mammals, it is the major hypothalamic releasing factor for pituitary adrenocorticotropin secretion, and is a neurotransmitter or neuromodulator at other sites in the central nervous system. In non-mammalian vertebrates, CRH not only acts as a neurotransmitter and hypophysiotropin, it also acts as a potent thyrotropin-releasing factor, allowing CRH to regulate both the adrenal and thyroid axes, especially in development. CRH-BP is thought to play an inhibitory role in which it binds CRH and other CRH-like ligands and prevents the activation of CRH receptors. There is however evidence that CRH-BP may also exhibit diverse extra and intracellular roles in a cell specific fashion and at specific times in development [].
Probab=44.67 E-value=7.9 Score=27.55 Aligned_cols=13 Identities=31% Similarity=0.248 Sum_probs=10.1
Q ss_pred CCEEEEEeEeeee
Q psy5140 75 GNHYILNGSKMWI 87 (120)
Q Consensus 75 ~~g~~l~G~k~~v 87 (120)
=+||.|||+|.-.
T Consensus 113 ~DGW~LnGe~FPs 125 (311)
T PF05428_consen 113 FDGWELNGEKFPS 125 (311)
T ss_pred EeceEECccCCcC
Confidence 3789999999543
No 53
>KOG1416|consensus
Probab=42.32 E-value=84 Score=23.95 Aligned_cols=54 Identities=17% Similarity=0.333 Sum_probs=34.4
Q ss_pred HHHHHHHhhcC-ceEEEeeCCCCC-CCCCccee---EEEEeCCEEEEEeEeeeeeCCCC
Q psy5140 39 ETVLKTLFESG-AGSFALSEPGSG-SDAFAMKT---TATKDGNHYILNGSKMWISNADI 92 (120)
Q Consensus 39 ~~~~~~l~~~G-~~~~~~~e~~~g-~~~~~~~~---~a~~~~~g~~l~G~k~~v~~~~~ 92 (120)
.+.+.+|.+.| ++.+-++|.-.. +.+.+-++ ...+.+|||+|+|.|.-+++...
T Consensus 394 ~e~~~~L~~~~~vinL~ite~wlR~YQVLP~RtHP~M~msg~gGylLsGikv~~~~~~~ 452 (475)
T KOG1416|consen 394 QECYHKLYQRGKVINLSITETWLRPYQVLPDRTHPLMTMSGGGGYLLSGIKVITAPEPL 452 (475)
T ss_pred HHHHHHHhhcCceEeeeechhhccceeecCCCCCcceEeecCCceEEeeeEEecCccch
Confidence 45666666665 788888886422 22222222 34577899999999977665543
No 54
>PHA02095 hypothetical protein
Probab=39.03 E-value=25 Score=19.52 Aligned_cols=16 Identities=31% Similarity=0.266 Sum_probs=12.2
Q ss_pred EeCCEEEEEeEeeeee
Q psy5140 73 KDGNHYILNGSKMWIS 88 (120)
Q Consensus 73 ~~~~g~~l~G~k~~v~ 88 (120)
....+|++||.+.|.-
T Consensus 24 ~iq~~yv~ng~wefsr 39 (84)
T PHA02095 24 VIQNGYVENGSWEFSR 39 (84)
T ss_pred eeeeeEEecCcEEEEe
Confidence 3457899999998853
No 55
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=31.72 E-value=1.5e+02 Score=19.41 Aligned_cols=45 Identities=7% Similarity=0.036 Sum_probs=24.8
Q ss_pred CCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHH---HHHHHhhcC
Q psy5140 5 YKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDET---VLKTLFESG 49 (120)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~l~~~G 49 (120)
+++-.+.+++.+..-+...-..|.........||.+ .++.+.+.|
T Consensus 11 LP~~~~~lR~~lY~~LapiAnrW~~~L~~~~~yP~~~~~fl~~ch~aG 58 (173)
T PF09859_consen 11 LPEPLQALREALYPRLAPIANRWNERLGIDARYPATLAEFLARCHAAG 58 (173)
T ss_pred CCHHHHHHHHHHhHHhHHHHHHHHHHhCCCCCCCccHHHHHHHHHhcc
Confidence 445556677666654442222333334456778854 466666777
No 56
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=27.99 E-value=46 Score=16.61 Aligned_cols=9 Identities=44% Similarity=1.065 Sum_probs=7.2
Q ss_pred EEEEeEeee
Q psy5140 78 YILNGSKMW 86 (120)
Q Consensus 78 ~~l~G~k~~ 86 (120)
|++||+|.|
T Consensus 38 ~Rl~~qriw 46 (47)
T PF12894_consen 38 YRLNWQRIW 46 (47)
T ss_pred EECCCcCcc
Confidence 778888866
No 57
>PF15631 Imm-NTF2-2: NTF2 fold immunity protein
Probab=25.07 E-value=1.2e+02 Score=16.57 Aligned_cols=16 Identities=31% Similarity=0.584 Sum_probs=11.0
Q ss_pred EEEEeCCEEEEEeEee
Q psy5140 70 TATKDGNHYILNGSKM 85 (120)
Q Consensus 70 ~a~~~~~g~~l~G~k~ 85 (120)
.+...++-|.++|+..
T Consensus 25 ~v~~~~~~WiV~Gtl~ 40 (66)
T PF15631_consen 25 RVTLDGDSWIVEGTLP 40 (66)
T ss_pred EEecCCCeEEEEeecC
Confidence 3444566699999974
No 58
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=24.61 E-value=95 Score=16.17 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=20.7
Q ss_pred CccHHHHHHHhhcCceEEEeeCCC
Q psy5140 36 KIDETVLKTLFESGAGSFALSEPG 59 (120)
Q Consensus 36 ~~~~~~~~~l~~~G~~~~~~~e~~ 59 (120)
..|.++++.+++.|+-++++++-.
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeCC
Confidence 447899999999999999999854
No 59
>KOG4234|consensus
Probab=24.06 E-value=1.4e+02 Score=20.61 Aligned_cols=44 Identities=18% Similarity=0.266 Sum_probs=23.6
Q ss_pred hcCccHHHHHHHhhcCceEEEeeCCCCCCCCCcceeEEEEeCCEEEEE
Q psy5140 34 EEKIDETVLKTLFESGAGSFALSEPGSGSDAFAMKTTATKDGNHYILN 81 (120)
Q Consensus 34 ~~~~~~~~~~~l~~~G~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~ 81 (120)
+..+-.+.+..|+++|-+++.-. |....+.+..-.+.-|+|-||
T Consensus 219 nEkmKee~m~kLKdlGN~iL~pF----GlStdnFqmvqd~nTGsySi~ 262 (271)
T KOG4234|consen 219 NEKMKEEMMEKLKDLGNFILSPF----GLSTDNFQMVQDPNTGSYSIN 262 (271)
T ss_pred HHHHHHHHHHHHHHhhhhhcccc----cccccceeeeeCCCCCceeEE
Confidence 34555788999999994433221 112222233333334668886
No 60
>PF10115 HlyU: Transcriptional activator HlyU; InterPro: IPR018772 This is a family of hypothetical prokaryotic proteins, with no known function. One of the proteins in this entry corresponds to the transcriptional activator HlyU, indicating a possible similar role in other members.
Probab=23.67 E-value=55 Score=19.07 Aligned_cols=25 Identities=8% Similarity=0.149 Sum_probs=14.2
Q ss_pred EeCCEEEEEeEeeeeeCCCCCCEEE
Q psy5140 73 KDGNHYILNGSKMWISNADIANIFL 97 (120)
Q Consensus 73 ~~~~g~~l~G~k~~v~~~~~a~~~~ 97 (120)
+.+|.|+|+|+=.=-.++..-.+-+
T Consensus 35 ~egGQfRvag~I~K~~~ge~k~H~F 59 (91)
T PF10115_consen 35 SEGGQFRVAGRIEKEIDGETKTHRF 59 (91)
T ss_pred ccCCceeEEEEEEeccCCcEEEEEE
Confidence 4566699988754434444433333
No 61
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=21.74 E-value=2.1e+02 Score=20.33 Aligned_cols=46 Identities=11% Similarity=0.179 Sum_probs=33.6
Q ss_pred CCCchHHHHHHHHHHHHHhhCCchhhh-----hhhhcCccHHHHHHHhhcC
Q psy5140 4 AYKGLGRDRLNIIAKLAKETIAPYVQK-----MESEEKIDETVLKTLFESG 49 (120)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~~~~~~~~~~l~~~G 49 (120)
.+++.|.+++..+-.+-.++-++.-.+ ..++.+.-+..++.|+.+|
T Consensus 3 ~LT~~QkeIL~aLi~LY~~~~r~IKgeeIA~~l~rnpGTVRNqmq~LkaLg 53 (294)
T COG2524 3 ELTSSQKEILQALINLYRRKKRPIKGEEIAEVLNRNPGTVRNQMQSLKALG 53 (294)
T ss_pred cccHHHHHHHHHHHHHHHhcCCCcchHHHHHHHccCcchHHHHHHHHHhcC
Confidence 578888888777777776665543322 4566677788999999998
No 62
>cd00148 PROF Profilin binds actin monomers, membrane polyphosphoinositides such as PI(4,5)P2, and poly-L-proline. Profilin can inhibit actin polymerization into F-actin by binding to monomeric actin (G-actin) and terminal F-actin subunits, but - as a regulator of the cytoskeleton - it may also promote actin polymerization. It plays a role in the assembly of branched actin filament networks, by activating WASP via binding to WASP's proline rich domain. Profilin may link the cytoskeleton with major signalling pathways by interacting with components of the phosphatidylinositol cycle and Ras pathway.
Probab=21.51 E-value=2e+02 Score=17.44 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=18.0
Q ss_pred CCEEEEEeEeeeeeCCCCCCEEEEEEEeC
Q psy5140 75 GNHYILNGSKMWISNADIANIFLVMANVD 103 (120)
Q Consensus 75 ~~g~~l~G~k~~v~~~~~a~~~~v~a~~~ 103 (120)
..|..|+|+|.++..+.. -.+.+|..
T Consensus 59 ~~Gi~l~G~KY~~l~~d~---~~i~~kk~ 84 (127)
T cd00148 59 STGLTLGGQKYMVIRADD---RSIYGKKG 84 (127)
T ss_pred cCCEEECCeEEEEEecCc---cEEEeeeC
Confidence 467889999999886653 44455543
Done!