Query psy5140
Match_columns 120
No_of_seqs 120 out of 1294
Neff 9.7
Searched_HMMs 29240
Date Fri Aug 16 18:22:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5140.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5140hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pfd_A Acyl-COA dehydrogenase; 99.9 1.1E-26 3.8E-31 165.8 13.4 119 1-120 15-202 (393)
2 2d29_A Acyl-COA dehydrogenase; 99.9 1.1E-25 3.8E-30 160.3 16.0 119 1-120 3-195 (387)
3 2vig_A Short-chain specific ac 99.9 1.4E-25 4.8E-30 160.0 15.3 119 1-120 2-190 (391)
4 3p4t_A Putative acyl-COA dehyd 99.9 1.6E-25 5.5E-30 160.3 15.4 118 1-120 22-210 (403)
5 1ukw_A Acyl-COA dehydrogenase; 99.9 7.1E-26 2.4E-30 160.9 13.4 119 1-120 1-188 (379)
6 2jif_A Short/branched chain sp 99.9 2.2E-25 7.5E-30 159.7 14.3 119 1-120 25-212 (404)
7 1buc_A Butyryl-COA dehydrogena 99.9 3.4E-25 1.2E-29 157.5 14.9 119 1-120 1-193 (383)
8 3nf4_A Acyl-COA dehydrogenase; 99.9 3.5E-25 1.2E-29 157.6 14.4 117 1-120 12-197 (387)
9 3ii9_A Glutaryl-COA dehydrogen 99.9 6.7E-26 2.3E-30 161.9 10.3 118 1-120 15-202 (396)
10 1egd_A Medium chain acyl-COA d 99.9 4E-25 1.4E-29 157.9 14.0 119 1-120 12-202 (396)
11 1rx0_A Acyl-COA dehydrogenase 99.9 6.3E-25 2.1E-29 156.8 14.7 118 1-120 15-201 (393)
12 3sf6_A Glutaryl-COA dehydrogen 99.9 7.1E-25 2.4E-29 156.9 14.5 114 1-120 26-209 (403)
13 3r7k_A Probable acyl COA dehyd 99.9 6.6E-25 2.2E-29 157.1 13.9 118 1-120 25-213 (403)
14 2pg0_A Acyl-COA dehydrogenase; 99.9 1.8E-24 6.1E-29 154.0 14.9 119 1-120 5-195 (385)
15 3mpi_A Glutaryl-COA dehydrogen 99.9 3.1E-25 1E-29 158.4 10.7 119 1-120 1-193 (397)
16 4hr3_A Putative acyl-COA dehyd 99.9 1.2E-24 4E-29 156.2 12.6 119 1-120 5-216 (415)
17 3swo_A Glutaryl-COA dehydrogen 99.9 1.5E-24 5E-29 155.1 12.0 114 1-120 22-204 (399)
18 1ivh_A Isovaleryl-COA dehydrog 99.9 3.9E-24 1.3E-28 152.7 13.6 117 3-120 11-201 (394)
19 2ix5_A Acyl-coenzyme A oxidase 99.9 6E-24 2E-28 153.6 13.1 116 1-120 51-235 (436)
20 2eba_A Putative glutaryl-COA d 99.9 4.7E-24 1.6E-28 151.8 12.2 115 1-120 7-192 (385)
21 2dvl_A Acyl-COA dehydrogenase; 99.9 1.6E-23 5.5E-28 148.5 14.1 112 3-120 1-182 (372)
22 1siq_A GCD, glutaryl-COA dehyd 99.9 2.4E-23 8.3E-28 148.4 13.3 115 1-120 10-195 (392)
23 3mkh_A Nitroalkane oxidase; ox 99.9 4.8E-23 1.6E-27 148.7 11.6 118 1-119 3-213 (438)
24 2wbi_A Acyl-COA dehydrogenase 99.9 9.6E-23 3.3E-27 146.9 11.7 119 1-120 19-223 (428)
25 2c12_A Nitroalkane oxidase; ox 99.9 2.9E-22 9.9E-27 144.7 12.7 118 1-119 2-215 (439)
26 3owa_A Acyl-COA dehydrogenase; 99.9 2.9E-22 1E-26 149.5 13.0 113 3-120 31-215 (597)
27 2z1q_A Acyl-COA dehydrogenase; 99.9 9.9E-21 3.4E-25 140.8 13.1 112 4-120 27-210 (577)
28 1r2j_A Protein FKBI; polyketid 99.8 2.4E-20 8.2E-25 132.0 10.6 102 14-120 2-171 (366)
29 3m9v_A FAD-dependent oxidoredu 99.8 2.7E-20 9.1E-25 134.4 10.8 113 1-120 16-204 (439)
30 2uxw_A VERY-long-chain specifi 99.8 2.4E-19 8.1E-24 134.1 13.0 113 5-120 46-239 (607)
31 2or0_A Hydroxylase; APC7385, r 99.8 1.7E-19 5.8E-24 129.4 9.6 107 2-120 15-190 (414)
32 3mxl_A Nitrososynthase; flavin 99.8 1E-19 3.4E-24 129.6 5.6 113 1-120 5-193 (395)
33 1w07_A Acyl-COA oxidase; oxido 99.7 2E-18 6.7E-23 130.2 6.9 116 2-119 23-208 (659)
34 2rfq_A 3-HSA hydroxylase, oxyg 99.7 4.7E-17 1.6E-21 115.9 10.3 98 11-120 11-174 (394)
35 2jbr_A P-hydroxyphenylacetate 99.7 7.3E-17 2.5E-21 116.0 11.1 99 10-120 38-202 (422)
36 3djl_A Protein AIDB; alpha hel 99.6 4.6E-15 1.6E-19 109.8 8.5 64 50-120 179-243 (541)
37 2ddh_A Acyl-COA oxidase; beta 99.5 1.9E-14 6.5E-19 108.6 6.6 68 50-118 133-208 (661)
38 2yyk_A 4-hydroxyphenylacetate- 99.5 8.7E-14 3E-18 101.7 8.7 68 50-120 139-216 (481)
39 1u8v_A Gamma-aminobutyrate met 99.5 6.3E-14 2.2E-18 102.6 6.9 69 50-120 144-222 (490)
40 3hwc_A Chlorophenol-4-monooxyg 99.4 7.5E-13 2.6E-17 97.3 7.1 67 50-120 148-223 (515)
41 4g5e_A 2,4,6-trichlorophenol 4 98.8 7.4E-09 2.5E-13 76.3 5.8 78 42-120 140-224 (517)
42 2bdr_A Ureidoglycolate hydrola 26.7 1.1E+02 0.0036 19.2 4.1 36 82-119 79-114 (175)
43 1xsq_A Ureidoglycolate hydrola 22.3 92 0.0032 19.3 3.2 36 82-119 77-112 (168)
No 1
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile}
Probab=99.94 E-value=1.1e-26 Score=165.78 Aligned_cols=119 Identities=35% Similarity=0.498 Sum_probs=104.7
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-------------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG------------------------------- 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------- 49 (120)
|+|.++++++++++.+++|+++++.+...+.|+.+.+|.++|+.|++.|
T Consensus 15 m~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~eela~~~ 94 (393)
T 3pfd_A 15 ELFQLPEEHIALREAIRALAEKEIAPYAAEVDEKARFPEEALAALNSSGFSAIHVPEEYGGQGADSVATCIVIEEVARVD 94 (393)
T ss_dssp -------CHHHHHHHHHHHHHHHTGGGHHHHHHTTCCCHHHHHHHHHHTCSCTTSCGGGTCCCCCHHHHHHHHHHHHTTC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhCchHHHHHhhhCCCCHHHHHHHHHCCCCCCCCChhHCCCCCCHHHHHHHHHHHHhhC
Confidence 7899999999999999999998999998889999999999999999998
Q ss_pred --------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCC
Q psy5140 50 --------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 91 (120)
Q Consensus 50 --------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~ 91 (120)
++|++++||.+|||+..++|+|+++++||+|||+|.|+||+.
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~ 174 (393)
T 3pfd_A 95 CSASLIPAVNKLGTMGLILRGSEELKKQVLPAVASGEAMASYALSEREAGSDAASMRTRAVADGDDWILNGSKCWITNGG 174 (393)
T ss_dssp HHHHHHHHHHHHTTHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTT
T ss_pred chHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCCCCCcccCeeEEEEcCCEEEEeeEEEEecCCc
Confidence 789999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 92 IANIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 92 ~a~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
.||+++|.+++++.++..++++|+ ||++
T Consensus 175 ~Ad~~~v~a~~~~~~~~~g~~~fl-V~~~ 202 (393)
T 3pfd_A 175 KSTWYTVMAVTDPDKGANGISAFM-VHKD 202 (393)
T ss_dssp TCSEEEEEEESCGGGGGGGEEEEE-EETT
T ss_pred ccCEEEEEEEeCCCCCCCceEEEE-EECC
Confidence 999999999987554557899999 9974
No 2
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A*
Probab=99.94 E-value=1.1e-25 Score=160.30 Aligned_cols=119 Identities=29% Similarity=0.402 Sum_probs=109.4
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-------------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG------------------------------- 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------- 49 (120)
|+|.+++++.++++.+++|+++.+.+...+.|+.+.+|.++|+.|++.|
T Consensus 3 m~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~ 82 (387)
T 2d29_A 3 LWFEEGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYYD 82 (387)
T ss_dssp CTTSCCHHHHHHHHHHHHHHHHHTGGGHHHHHHHCCCCHHHHHHHHTTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcchhHHHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHhhC
Confidence 7899999999999999999988899988888888999999999999998
Q ss_pred ---------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCC
Q psy5140 50 ---------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNA 90 (120)
Q Consensus 50 ---------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~ 90 (120)
++|++++||.+|||+..+.|+|+++++||+|||+|.|+||+
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~ 162 (387)
T 2d29_A 83 GALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQG 162 (387)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTSSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEeCCCCCCCCHhhCceEEEEeCCEEEEEeEEeccCCC
Confidence 78999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCCC----CCcceEEEEEeeCC
Q psy5140 91 DIANIFLVMANVDVSK----GKVTKGLFSSIPTG 120 (120)
Q Consensus 91 ~~a~~~~v~a~~~~~~----~~~~~~~~~~V~~~ 120 (120)
..||+++|.|++++++ +..++++|+ ||++
T Consensus 163 ~~Ad~~~v~a~~~~~~~~~~~~~g~~~fl-V~~~ 195 (387)
T 2d29_A 163 SVAGVYVVMARTDPPPSPERKHQGISAFA-FFRP 195 (387)
T ss_dssp TTCSEEEEEEECSCCSCGGGTTTTEEEEE-EECC
T ss_pred CcCCEEEEEEEeCCccccCCCCCCeEEEE-EeCC
Confidence 9999999999986432 445799999 9974
No 3
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A*
Probab=99.94 E-value=1.4e-25 Score=159.99 Aligned_cols=119 Identities=31% Similarity=0.450 Sum_probs=106.1
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-------------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG------------------------------- 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------- 49 (120)
|+|.+++++.++++.+++|+++.+.+...+.|+.+.+|.++|+.|++.|
T Consensus 2 ~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~ 81 (391)
T 2vig_A 2 QSVELPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFPAAQVKKMGGLGLLAMDVPEELGGAGLDYLAYAIAMEEISRGC 81 (391)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCHHHHHHHHHHTTTSTTSCGGGTSCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCcccHHHHHhcCCCCHHHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHHHHhhc
Confidence 7899999999999999999998899888888889999999999999998
Q ss_pred ---------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCC
Q psy5140 50 ---------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNA 90 (120)
Q Consensus 50 ---------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~ 90 (120)
++|++++||.+|||+..+.|+|+++++||+|||+|.|+||+
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~ 161 (391)
T 2vig_A 82 ASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNA 161 (391)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHCCHHHHHHHTGGGSSSSCCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCCcccceeEEEEeCCEEEEeeEEEeecCC
Confidence 78999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 91 DIANIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 91 ~~a~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
..||+++|.|+++++++..++++|+ ||++
T Consensus 162 ~~Ad~~~v~a~~~~~~~~~g~~~fl-V~~~ 190 (391)
T 2vig_A 162 WEASAAVVFASTDRALQNKSISAFL-VPMP 190 (391)
T ss_dssp TTCSEEEEEEECCSSSTTSCEEEEE-EESS
T ss_pred CcCCEEEEEEEeCCCCCCCceEEEE-EeCC
Confidence 9999999999986443455799999 9974
No 4
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A*
Probab=99.94 E-value=1.6e-25 Score=160.26 Aligned_cols=118 Identities=25% Similarity=0.417 Sum_probs=109.8
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-------------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG------------------------------- 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------- 49 (120)
|++.++++++++++.+++|+++++.+...+.|+.+.+|.++|+.|++.|
T Consensus 22 M~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eel~~~~ 101 (403)
T 3p4t_A 22 MSIWTTAEREALRKTVRAFAEREVLPHAHEWERAGEIPRELHRKAAELGLLGAGFPEDAGGSGGDGADPVVICEEMHYAG 101 (403)
T ss_dssp -CTTSSHHHHHHHHHHHHHHHHHTTTTHHHHHHHTSCCHHHHHHHHHTTCTTBTSCGGGTCCBCCTHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCchhHHHHhhcCCCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhC
Confidence 8899999999999999999999999998889999999999999999998
Q ss_pred ----------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeC
Q psy5140 50 ----------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISN 89 (120)
Q Consensus 50 ----------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~ 89 (120)
++|++++||.+|||+..++|+|+++++||+|||+|.|+||
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs~ 181 (403)
T 3p4t_A 102 SPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVINGAKTYITS 181 (403)
T ss_dssp CCHHHHHHHSTHHHHSHHHHHHTCHHHHHHTHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred CchhhhHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccceEEEEEeCCEEEEEEEEEEecC
Confidence 7899999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 90 ADIANIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 90 ~~~a~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
+..||+++|.|++++. +..++++|+ ||++
T Consensus 182 a~~Ad~~~v~a~~~~~-~~~g~~~fl-V~~~ 210 (403)
T 3p4t_A 182 GVRADYVVTAARTGGP-GAGGVSLIV-VDKG 210 (403)
T ss_dssp TTTCSEEEEEEECSSS-SGGGEEEEE-EETT
T ss_pred CcccCEEEEEEEeCCC-CCCceEEEE-EeCC
Confidence 9999999999998754 456899999 9974
No 5
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1
Probab=99.94 E-value=7.1e-26 Score=160.90 Aligned_cols=119 Identities=38% Similarity=0.596 Sum_probs=109.4
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-------------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG------------------------------- 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------- 49 (120)
|+|.+++++.++++.+++|+.+.+.+...+.|+.+.+|.++|+.|++.|
T Consensus 1 M~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~eel~~~~ 80 (379)
T 1ukw_A 1 IDFSLTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYGGMGLKMLDEVIVGEELAYAC 80 (379)
T ss_dssp CBCCCCHHHHHHHHHHHHHHHHTTGGGHHHHHHHTCCCHHHHHHHHHTTCTTTTSCGGGTSCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCchhHHHHhhcCCCCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHHHHhC
Confidence 8999999999999999999988899988888888999999999999998
Q ss_pred --------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCC
Q psy5140 50 --------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 91 (120)
Q Consensus 50 --------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~ 91 (120)
++|++++||.+|||+..++++|+++++||+|||+|.|+||+.
T Consensus 81 ~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~ 160 (379)
T 1ukw_A 81 MGIYTIPMASDLGITPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGG 160 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHGGGTSSSCEEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTT
T ss_pred chHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcChhhCeEEEEEeCCEEEEEEEEecccCCC
Confidence 788999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 92 IANIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 92 ~a~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
.||+++|.+++++.++..++++|+ ||++
T Consensus 161 ~Ad~~~v~a~~~~~~~~~g~~~fl-V~~~ 188 (379)
T 1ukw_A 161 EAEWVVVFATVNPELRHKGVVALV-VERG 188 (379)
T ss_dssp TEEEEEEEEESCGGGGGGGEEEEE-EETT
T ss_pred cCCEEEEEEEcCCCCCCCceEEEE-EeCC
Confidence 999999999986433446789999 9964
No 6
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}
Probab=99.93 E-value=2.2e-25 Score=159.71 Aligned_cols=119 Identities=44% Similarity=0.683 Sum_probs=108.4
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-------------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG------------------------------- 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------- 49 (120)
|+|.+++++.++++.+++|+++++.|...+.|+.+.+|.++|+.|++.|
T Consensus 25 ~~~~~~~e~~~l~~~~r~~~~~~~~p~~~~~d~~~~~~~~~~~~l~e~Gl~~l~~P~e~GG~g~~~~~~~~v~eel~~~~ 104 (404)
T 2jif_A 25 PLQTFTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAKVD 104 (404)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHTGGGHHHHHHHTCCCHHHHHHHHHTTTTSSSSCGGGTCCCCCHHHHHHHHHHHHTTC
T ss_pred ccCCCCHHHHHHHHHHHHHHHHhCcccHHHHhhcCCCCHHHHHHHHHCCCCccCCchhhCCCCCCHHHHHHHHHHHHhcC
Confidence 6678899999999999999999999988888888999999999999998
Q ss_pred --------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCC
Q psy5140 50 --------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 91 (120)
Q Consensus 50 --------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~ 91 (120)
+++++++||.+|||...++|+|+++++||+|||+|.|+||+.
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~g~~~~~a~tEp~~Gsd~~~~~t~A~~~g~g~vlnG~K~~is~a~ 184 (404)
T 2jif_A 105 ASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTEKVGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAE 184 (404)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHHTCCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETTT
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCcceEEecCCCCCCChhhceeEEEEeCCEEEEEeEEEeecCCc
Confidence 678999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 92 IANIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 92 ~a~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
.||+++|.|++++.++..++++|+ ||++
T Consensus 185 ~Ad~~~v~ar~~~~~~~~g~~~fl-V~~~ 212 (404)
T 2jif_A 185 HAGLFLVMANVDPTIGYKGITSFL-VDRD 212 (404)
T ss_dssp TCSEEEEEEESCGGGGGGGEEEEE-EETT
T ss_pred ccCEEEEEEEeCCCCCCCceEEEE-EecC
Confidence 999999999986443446789999 9964
No 7
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1
Probab=99.93 E-value=3.4e-25 Score=157.54 Aligned_cols=119 Identities=34% Similarity=0.579 Sum_probs=109.9
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-------------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG------------------------------- 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------- 49 (120)
|+|.+++++.++++.+++|+++++.+...+.|+.+.+|.++|+.|++.|
T Consensus 1 M~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~v~eel~ 80 (383)
T 1buc_A 1 MDFNLTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGDDGGDVLSYILAVEELA 80 (383)
T ss_dssp CBCCCCHHHHHHHHHHHHHHHHTTTTTHHHHHHHTCCCHHHHHHHHTTSGGGTTSCGGGTCGGGGTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCchhHHHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999988999988888888999999999999988
Q ss_pred ------------------------------------------ceEEEeeCCCCCCCCCcceeEEEEe-CCEEEEEeEeee
Q psy5140 50 ------------------------------------------AGSFALSEPGSGSDAFAMKTTATKD-GNHYILNGSKMW 86 (120)
Q Consensus 50 ------------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~-~~g~~l~G~k~~ 86 (120)
++|++++||.+|||+..++|+|+++ ++||+|||+|.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~~g~~lnG~K~~ 160 (383)
T 1buc_A 81 KYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIF 160 (383)
T ss_dssp HHCHHHHHHHHHHHHHTHHHHHHHCCHHHHHHTHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEE
T ss_pred hhChHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEeCCCCCCCChhhCEeEEEEcCCCEEEEEEEEec
Confidence 7899999999999999999999999 999999999999
Q ss_pred eeCCCCCCEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 87 ISNADIANIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 87 v~~~~~a~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
+||+..||+++|.|++++.++..++++|+ ||++
T Consensus 161 ~s~~~~Ad~~~v~a~~~~~~~~~g~~~fl-V~~~ 193 (383)
T 1buc_A 161 ITNGGAADIYIVFAMTDKSKGNHGITAFI-LEDG 193 (383)
T ss_dssp EETTTTCSEEEEEEESCSSSSTTSEEEEE-EETT
T ss_pred cCCCCcCCEEEEEEEeCCCCCCCceEEEE-EECC
Confidence 99999999999999986544456799999 9974
No 8
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile}
Probab=99.93 E-value=3.5e-25 Score=157.63 Aligned_cols=117 Identities=28% Similarity=0.518 Sum_probs=107.6
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-------------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG------------------------------- 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------- 49 (120)
|++.++++++++++.+++|+++.+.+...+.|+.+.+|.++|+.|++.|
T Consensus 12 ~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~eel~~~~ 91 (387)
T 3nf4_A 12 DRLLPSQEAAELIELTREIADKVLDPIVDRHEKDETYPEGVFEQLGAAGLLSLPQPEEWGGGGQPYEVYLQVLEEIAARW 91 (387)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCTTHHHHHHTTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHTTC
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCCccHHHHhhhCCCCHHHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHHHHHhC
Confidence 3677899999999999999999999998889999999999999999998
Q ss_pred --------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCC
Q psy5140 50 --------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 91 (120)
Q Consensus 50 --------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~ 91 (120)
++|++++||.+||++..++|+|+++++||+|||+|.|+||+.
T Consensus 92 ~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~ 171 (387)
T 3nf4_A 92 ASVAVAVSVHSLSSHPLLVFGTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGG 171 (387)
T ss_dssp HHHHHHHHHHHHHTHHHHHHSCHHHHHHHHHHHTTSSCCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTT
T ss_pred chHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEEcCCCCCCChhhCEEEEEEeCCEEEEEeEEecccCCc
Confidence 789999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 92 IANIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 92 ~a~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
.||+++|.++++ ++..++++|+ ||++
T Consensus 172 ~Ad~~~v~a~~~--~~~~g~~~fl-V~~~ 197 (387)
T 3nf4_A 172 KADFYTLFARTG--EGSRGVSCFL-VPAD 197 (387)
T ss_dssp TCSEEEEEEECC----CCCEEEEE-EETT
T ss_pred ccCEEEEEEEeC--CCCCceEEEE-EECC
Confidence 999999999986 3456789999 9974
No 9
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A
Probab=99.93 E-value=6.7e-26 Score=161.87 Aligned_cols=118 Identities=34% Similarity=0.494 Sum_probs=102.7
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-------------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG------------------------------- 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------- 49 (120)
|+|.++++++++++.+++|+++++.+...+.|+.+.+|.++|+.|++.|
T Consensus 15 m~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~eel~~~~ 94 (396)
T 3ii9_A 15 LDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIPEQYGGPGLDYVSYGLIAREVERVD 94 (396)
T ss_dssp GGGGSCHHHHHHHHHHHHHCCCCCHHHHHHHHHHTCCCTHHHHHHHHTTCSSTTSCGGGTSCCCCHHHHHHHHHHHHTTC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhhCCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHHHhC
Confidence 7888999999999999999988898888888999999999999999998
Q ss_pred ---------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCC
Q psy5140 50 ---------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNA 90 (120)
Q Consensus 50 ---------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~ 90 (120)
++|++++||.+|||+..+.|+|+++++||+|||+|.|+||+
T Consensus 95 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs~a 174 (396)
T 3ii9_A 95 SGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNS 174 (396)
T ss_dssp HHHHHHHHCCCCCCCHHHHHHSCHHHHHHHHHHHHHTSSCEEEECCCCC------CCCCEEEEETTEEEEEEEEEEEETG
T ss_pred hhHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCChhhCeeEEEEeCCEEEEEEEEEeECCC
Confidence 78999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 91 DIANIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 91 ~~a~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
..||+++|.|++++ ++..++++|+ ||++
T Consensus 175 ~~Ad~~~v~a~~~~-~g~~g~~~fl-V~~~ 202 (396)
T 3ii9_A 175 PIADVFVVWAKLDE-DGRDEIRGFI-LEKG 202 (396)
T ss_dssp GGCSEEEEEEEEEE-TTEEEEEEEE-EETT
T ss_pred ccCCEEEEEEEecC-CCCCceEEEE-EecC
Confidence 99999999999862 2345689999 9974
No 10
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A*
Probab=99.93 E-value=4e-25 Score=157.88 Aligned_cols=119 Identities=27% Similarity=0.504 Sum_probs=108.7
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-------------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG------------------------------- 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------- 49 (120)
|+|.+++++.++++.+++|+++++.+...+.|+.+.+|.++|+.|++.|
T Consensus 12 m~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~ 91 (396)
T 1egd_A 12 FSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGLGLGTFDACLISEELAYGC 91 (396)
T ss_dssp EECCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHCCCCHHHHHHHHHHTCSSTTSCGGGTSCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHHCCCCCCCCchhhCCCCCCHHHHHHHHHHHHhhC
Confidence 7788999999999999999998898888888888999999999999998
Q ss_pred --------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCC
Q psy5140 50 --------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 91 (120)
Q Consensus 50 --------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~ 91 (120)
++|++++||.+||++..++++|+++++||+|||+|.|+||+.
T Consensus 92 ~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~ 171 (396)
T 1egd_A 92 TGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGG 171 (396)
T ss_dssp HHHHHHHHHHHHHTHHHHHHCCHHHHHHHHHHHHHSCCCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEETTT
T ss_pred ccHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcchhhCeeEEEEeCCEEEEEEEEEcccCCc
Confidence 789999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCCCCC---cceEEEEEeeCC
Q psy5140 92 IANIFLVMANVDVSKGK---VTKGLFSSIPTG 120 (120)
Q Consensus 92 ~a~~~~v~a~~~~~~~~---~~~~~~~~V~~~ 120 (120)
.||+++|.|++++.++. .++++|+ ||++
T Consensus 172 ~Ad~~~v~a~~~~~~~~~~~~g~~~fl-V~~~ 202 (396)
T 1egd_A 172 KANWYFLLARSDPDPKAPANKAFTGFI-VEAD 202 (396)
T ss_dssp TCSEEEEEEECCCCTTSCGGGTEEEEE-EETT
T ss_pred ccCEEEEEEEeCCCCCCCCCCCeEEEE-EeCC
Confidence 99999999998654333 5789999 9974
No 11
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Probab=99.93 E-value=6.3e-25 Score=156.76 Aligned_cols=118 Identities=31% Similarity=0.495 Sum_probs=108.0
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-------------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG------------------------------- 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------- 49 (120)
|+|.+++++.++++.+++|+++++.|...+.|+.+.+|.++|+.|++.|
T Consensus 15 ~~~~~~~e~~~~~~~~r~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~ 94 (393)
T 1rx0_A 15 PSMGLNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATGC 94 (393)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCHHHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCccHHHHhhcCCCCHHHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhC
Confidence 6778899999999999999999998888888888999999999999998
Q ss_pred --------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCC
Q psy5140 50 --------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 91 (120)
Q Consensus 50 --------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~ 91 (120)
++|++++||.+||+...+.|+|+++++||+|||+|.|+||+.
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~is~a~ 174 (393)
T 1rx0_A 95 TSTTAYISIHNMCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAG 174 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETTT
T ss_pred cchhHHHHHhHHHHHHHHHHCCHHHHHHHHHHHhCCCceEEEEecCCCCCcCcccceeEEEEcCCEEEEEeEEEeecCCc
Confidence 789999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 92 IANIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 92 ~a~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
.||+++|.+++++ ++..++++|+ ||++
T Consensus 175 ~Ad~~~v~a~~~~-~~~~g~~~fl-V~~~ 201 (393)
T 1rx0_A 175 ESDIYVVMCRTGG-PGPKGISCIV-VEKG 201 (393)
T ss_dssp TCSEEEEEEESSS-SSGGGEEEEE-EETT
T ss_pred cCCEEEEEEEcCC-CCCCceEEEE-EeCC
Confidence 9999999999753 3456799999 9974
No 12
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis}
Probab=99.93 E-value=7.1e-25 Score=156.92 Aligned_cols=114 Identities=30% Similarity=0.532 Sum_probs=107.5
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCcc-HHHHHHHhhcC------------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKID-ETVLKTLFESG------------------------------ 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~l~~~G------------------------------ 49 (120)
|+|.++++++++++.+++|+++++.+...+.|+.+.+| .++|+.|++.|
T Consensus 26 m~~~l~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~Gl~~l~~~e~GG~g~~~~~~~~v~eela~~~ 105 (403)
T 3sf6_A 26 INAVLSAEEREIRDTVRSVVQRRIKPHIASWYEDGELPARELAVELGELGLLGMHLKGYGCAGMSAVAYGLACLELEAGD 105 (403)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCHHHHHHHHHHTTCSSTTSCSTTCCCCCHHHHHHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhcChhHHHHHhcCCCCHHHHHHHHHHCCCCcccchhhCCCCCCHHHHHHHHHHHHHhc
Confidence 78999999999999999999998999888899999999 99999999998
Q ss_pred ---------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCC
Q psy5140 50 ---------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNA 90 (120)
Q Consensus 50 ---------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~ 90 (120)
++|++++||.+|||+..+.|+|+++++||+|||+|.|+||+
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~a 185 (403)
T 3sf6_A 106 SGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILTGTKMWITNG 185 (403)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETG
T ss_pred ccHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEEccCCCCCCchhcEEEEEEECCEEEEEEEEEeecCC
Confidence 78999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 91 DIANIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 91 ~~a~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
..||+++|+|+++ +++++|+ ||++
T Consensus 186 ~~Ad~~~v~ar~~-----~g~~~fl-V~~~ 209 (403)
T 3sf6_A 186 SVADVAVVWARTD-----EGIRGFV-VPTD 209 (403)
T ss_dssp GGCSEEEEEEEET-----TEEEEEE-EETT
T ss_pred cccCEEEEEEEeC-----CceEEEE-EECC
Confidence 9999999999986 4689999 9964
No 13
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus}
Probab=99.93 E-value=6.6e-25 Score=157.10 Aligned_cols=118 Identities=24% Similarity=0.358 Sum_probs=108.8
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-------------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG------------------------------- 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------- 49 (120)
|++.++++++++++.+++|+++++.+...+.|+.+.+|.++|+.|++.|
T Consensus 25 ~~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~ 104 (403)
T 3r7k_A 25 PEAWTTPERRALSQMARSFVEREIAPKLAEWEHVGEIPRDLHLNAAEVGLLGIGFPEEVGGSGGNAIDSALVTEAILAAG 104 (403)
T ss_dssp CGGGGCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTSCCTHHHHHHHHHTCTTBTSCGGGTCCBCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhcCCCCHHHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHHHHHhcC
Confidence 3556899999999999999999999998889999999999999999998
Q ss_pred ----------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeC
Q psy5140 50 ----------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISN 89 (120)
Q Consensus 50 ----------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~ 89 (120)
++|++++||.+|||+..++|+|+++++||+|||+|.|+||
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs~ 184 (403)
T 3r7k_A 105 GSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFITS 184 (403)
T ss_dssp CCHHHHHHHCTHHHHSHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEECSSEEEEEEEEEEEET
T ss_pred CchHHHHHHHHhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhceEEEEEECCEEEEEEEEEcccC
Confidence 7899999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 90 ADIANIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 90 ~~~a~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
+..||+++|.+++++. +..++++|+ ||++
T Consensus 185 a~~Ad~~~v~a~~~~~-~~~g~~~fl-V~~~ 213 (403)
T 3r7k_A 185 GVRADFVTTAVRTGGP-GYGGVSLLV-IDKN 213 (403)
T ss_dssp TTTCSEEEEEEECSSS-SGGGEEEEE-EETT
T ss_pred CccCCEEEEEEEcCCC-CCCceEEEE-EeCC
Confidence 9999999999998754 456899999 9974
No 14
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus}
Probab=99.92 E-value=1.8e-24 Score=153.97 Aligned_cols=119 Identities=26% Similarity=0.349 Sum_probs=108.0
Q ss_pred CC-CCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC------------------------------
Q psy5140 1 MD-MAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG------------------------------ 49 (120)
Q Consensus 1 m~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------ 49 (120)
|+ |.+++++.++++.+++|+.+++.+...+.|+.+.+|.++|+.|++.|
T Consensus 5 m~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~ 84 (385)
T 2pg0_A 5 MTARYLREEHHMFRAAFRKFLEKEAYPHYNDWEKRGIIPRSFWAKMGENGFLCPWVDEKYGGLNADFAYSVVINEELEKV 84 (385)
T ss_dssp -CCTTCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTSCCHHHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHhCchhHHHHHhcCCCCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhh
Confidence 66 88999999999999999998999988888888999999999999998
Q ss_pred ---------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCC
Q psy5140 50 ---------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNA 90 (120)
Q Consensus 50 ---------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~ 90 (120)
++|++++||.+|||+..+.|+|+++++||+|||+|.|+||+
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~ 164 (385)
T 2pg0_A 85 GSSLVGIGLHNDIVTPYIASYGTEEQKQKWLPKCVTGELITAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFITNG 164 (385)
T ss_dssp CGGGHHHHHHHHTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEETTT
T ss_pred CCchHHHHHHhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCcCHhhCeEEEEEcCCEEEEEeEEecccCC
Confidence 78999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCC--CCCcceEEEEEeeCC
Q psy5140 91 DIANIFLVMANVDVS--KGKVTKGLFSSIPTG 120 (120)
Q Consensus 91 ~~a~~~~v~a~~~~~--~~~~~~~~~~~V~~~ 120 (120)
..||+++|.++++++ ++..++++|+ ||++
T Consensus 165 ~~Ad~~~v~a~~~~~~~~~~~g~~~fl-V~~~ 195 (385)
T 2pg0_A 165 IHADLIVVACKTDPQAKPPHRGISLLV-VERD 195 (385)
T ss_dssp TTCSEEEEEEESCTTCSSGGGGEEEEE-EETT
T ss_pred cccCEEEEEEEeCCccCCCCCceEEEE-EeCC
Confidence 999999999998643 2445789999 9974
No 15
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*
Probab=99.92 E-value=3.1e-25 Score=158.40 Aligned_cols=119 Identities=32% Similarity=0.568 Sum_probs=110.6
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCcc-HHHHHHHhhcC------------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKID-ETVLKTLFESG------------------------------ 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~l~~~G------------------------------ 49 (120)
|+|.++++++++++.+++|+++.+.+...+.|+.+.+| .++|+.|++.|
T Consensus 1 M~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~~~v~eela 80 (397)
T 3mpi_A 1 MDFNLSKELQMLQKEVRNFVNKKIVPFADQWDNENHFPYEEAVRPMGELGFFGTVIPEEYGGEGMDQGWLAAMIVTEEIA 80 (397)
T ss_dssp CBCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCTTTTHHHHHHTTTTCTTSCGGGTSCCCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhcCCCCHHHHHHHHHHCCCCccCCChhhCCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999988899999999 99999999998
Q ss_pred ------------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeee
Q psy5140 50 ------------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWI 87 (120)
Q Consensus 50 ------------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v 87 (120)
++|++++||.+||+...+.++|+++++||+|||+|.|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~~ 160 (397)
T 3mpi_A 81 RGSSALRVQLNMEVLGCAYTILTYGSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWI 160 (397)
T ss_dssp HHCHHHHHHHHHHTTTTHHHHHHHSCHHHHHHHHHHHHTTSSCCCEECCBTTBSSCGGGCCCEEEECSSEEEEEEEEEEE
T ss_pred hhCchHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccCeEEEEEeCCEEEEEEEEEee
Confidence 68899999999999999999999999999999999999
Q ss_pred eCCCCCCEEEEEEEeCCCCCCcceEEEEEe-eCC
Q psy5140 88 SNADIANIFLVMANVDVSKGKVTKGLFSSI-PTG 120 (120)
Q Consensus 88 ~~~~~a~~~~v~a~~~~~~~~~~~~~~~~V-~~~ 120 (120)
||+..||+++|.+++++.++..++++|+ | |++
T Consensus 161 s~~~~Ad~~~v~a~~~~~~~~~g~~~fl-V~~~~ 193 (397)
T 3mpi_A 161 SNAAQADVLIYYAYTDKAAGSRGLSAFV-IEPRN 193 (397)
T ss_dssp ETTTTCSSEEEEEESCGGGGGGSEEEEE-ECTTT
T ss_pred CCCcccCEEEEEEEcCCCCCCCceEEEE-EEcCC
Confidence 9999999999999987544556799999 8 864
No 16
>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus}
Probab=99.92 E-value=1.2e-24 Score=156.19 Aligned_cols=119 Identities=18% Similarity=0.362 Sum_probs=103.8
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhhhhhhhc------------------CccHHHHHHHhhcC-------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQKMESEE------------------KIDETVLKTLFESG------------- 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~------------------~~~~~~~~~l~~~G------------- 49 (120)
|+|.+++++.++++.+++|+++++.|...+.++.. .+|.++|+.|++.|
T Consensus 5 M~~~~~~~~~~l~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~G~~~~~~P~~~GG~ 84 (415)
T 4hr3_A 5 MDFAPSARAAELIAAVREFIDAEVMPVERAVLAHHDELLGARAGTTAELWHVPPELDSLKAKARAAGLWNLFLPDPELGG 84 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCSCSGGGGSCCTHHHHHHHHHHHTTCSSTTCCCTTTSC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCccHHHHhhhccccccccccccccccCcchhHHHHHHHHHhCCCcCcCCCHHHCCC
Confidence 89999999999999999999988888776655433 27899999999998
Q ss_pred ----------------------------------------------------------ceEEEeeCCC-CCCCCCcceeE
Q psy5140 50 ----------------------------------------------------------AGSFALSEPG-SGSDAFAMKTT 70 (120)
Q Consensus 50 ----------------------------------------------------------~~~~~~~e~~-~g~~~~~~~~~ 70 (120)
++|++++||. +|||+..++|+
T Consensus 85 g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~~gsd~~~~~t~ 164 (415)
T 4hr3_A 85 GLSNSEYAPLAEQMGRSLFAPTVFNCNAPDSGNMEVLHRYGSQEQKEVWLEPLLEGDIRSAFCMTEPDVASSDATNMAAT 164 (415)
T ss_dssp CCCHHHHHHHHHHHTTCSSHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHTTSCEEEEECCCTTSCTTSGGGCCCE
T ss_pred CCCHHHHHHHHHHHhcccchHHHHHHhccccchHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCCCCCchhhCeeE
Confidence 6899999999 99999999999
Q ss_pred EEEeCCEEEEEeEeeeeeCCCC--CCEEEEEEEeCCC-CCCcceEEEEEeeCC
Q psy5140 71 ATKDGNHYILNGSKMWISNADI--ANIFLVMANVDVS-KGKVTKGLFSSIPTG 120 (120)
Q Consensus 71 a~~~~~g~~l~G~k~~v~~~~~--a~~~~v~a~~~~~-~~~~~~~~~~~V~~~ 120 (120)
|+++++||+|||+|.|+||+.+ ||+++|+|++++. ++..++++|+ ||++
T Consensus 165 A~~~g~g~~lnG~K~~is~a~~~~Ad~~~v~a~~~~~~~~~~g~~~fl-V~~~ 216 (415)
T 4hr3_A 165 AVVEGDEVVINGRKWWSTGVGHPDCKVIIFMGLTDPNAHRYARHSMVL-VPMD 216 (415)
T ss_dssp EEEETTEEEEEEEEEEEETTTSTTEEEEEEEEECCTTSCTTSSEEEEE-EETT
T ss_pred EEEECCEEEEeeEEeeECCCCCCCCCEEEEEEEeCCCCCCCCceEEEE-EEcC
Confidence 9999999999999999999976 9999999998754 3456899999 9974
No 17
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis}
Probab=99.92 E-value=1.5e-24 Score=155.09 Aligned_cols=114 Identities=31% Similarity=0.494 Sum_probs=106.3
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-------------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG------------------------------- 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------- 49 (120)
|++.++++++++++.+++|+++++.+...+.|+.+.+|.++|+.|++.|
T Consensus 22 m~~~l~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~~e~GG~g~~~~~~~~v~eel~~~~~ 101 (399)
T 3swo_A 22 TDRLLDQDERDIAATVRQFVDTRLKPNVEGWFESATLPSELAKEFGNLGVLGMHLQGYGCAGTNAVSYGLACMELEAGDS 101 (399)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCTTHHHHHHHHTCTTTTSCSTTCCCCCHHHHHHHHHHHHHHCH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhhCCCCHHHHHHHHHCCCCcCChhhhCCCCCCHHHHHHHHHHHHHhCc
Confidence 6778999999999999999998899988888989999999999999987
Q ss_pred --------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCC
Q psy5140 50 --------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 91 (120)
Q Consensus 50 --------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~ 91 (120)
++|++++||.+|||+..+.|+|+++++||+|||+|.|+||+.
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs~a~ 181 (399)
T 3swo_A 102 GFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMWITNGN 181 (399)
T ss_dssp HHHHHHHHHTTTHHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTT
T ss_pred cHHHHHHHHhhhhhhHHHhcCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCCCccceEEEEEeCCEEEEEEEEEeECCCC
Confidence 789999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 92 IANIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 92 ~a~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
.||+++|.|+++ .++++|+ ||++
T Consensus 182 ~Ad~~~v~a~~~-----~g~~~fl-V~~~ 204 (399)
T 3swo_A 182 LADVATVWAQTD-----DGIRGFL-VPTD 204 (399)
T ss_dssp TCSEEEEEEBCT-----TSCEEEE-EETT
T ss_pred ccCEEEEEEEeC-----CceEEEE-EeCC
Confidence 999999999975 4589999 9964
No 18
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Probab=99.92 E-value=3.9e-24 Score=152.66 Aligned_cols=117 Identities=34% Similarity=0.563 Sum_probs=106.5
Q ss_pred CCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccH--HHHHHHhhcC-------------------------------
Q psy5140 3 MAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDE--TVLKTLFESG------------------------------- 49 (120)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~G------------------------------- 49 (120)
|.+++++.++++.+++|+++++.+...+.|+.+.+|. ++|+.|++.|
T Consensus 11 ~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eel~~~~ 90 (394)
T 1ivh_A 11 NGLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRAS 90 (394)
T ss_dssp GTCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCTTHHHHHHHHHHHTCTTTTSCGGGTCCCCCHHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHHHHHHHhCChhHHHHHhcCCCCchHHHHHHHHHCCCCCCCCCcccCCCCCCHHHHHHHHHHHHhhc
Confidence 6789999999999999999899998888888899999 9999999998
Q ss_pred ---------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCC
Q psy5140 50 ---------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNA 90 (120)
Q Consensus 50 ---------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~ 90 (120)
++|++++||.+|||+..+.++|+++++||+|||+|.|+||+
T Consensus 91 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~vs~~ 170 (394)
T 1ivh_A 91 GAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNG 170 (394)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEETG
T ss_pred hhHHHHHHHhhHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCcCcccceEEEEEcCCEEEEEeEEEeeCCC
Confidence 78999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCC--CCCcceEEEEEeeCC
Q psy5140 91 DIANIFLVMANVDVS--KGKVTKGLFSSIPTG 120 (120)
Q Consensus 91 ~~a~~~~v~a~~~~~--~~~~~~~~~~~V~~~ 120 (120)
..||+++|.|++++. ++..++++|+ ||++
T Consensus 171 ~~Ad~~~v~ar~~~~~~~~~~g~~~fl-V~~~ 201 (394)
T 1ivh_A 171 PDADVLIVYAKTDLAAVPASRGITAFI-VEKG 201 (394)
T ss_dssp GGCSEEEEEEESCTTCSSGGGGEEEEE-EETT
T ss_pred CcCCEEEEEEEeCCcccCCCCCeEEEE-EeCC
Confidence 999999999998643 3345789999 9964
No 19
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A*
Probab=99.91 E-value=6e-24 Score=153.62 Aligned_cols=116 Identities=22% Similarity=0.336 Sum_probs=105.0
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-------------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG------------------------------- 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------- 49 (120)
|++.+++++.++++.+++|+++++.+...+.++.+.+|.++|+.|++.|
T Consensus 51 ~~~~l~~e~~~l~~~~r~f~~~~~~p~~~~~~~~~~~p~~~~~~l~e~Gl~~l~~pe~GG~G~~~~~~~~v~eela~~~~ 130 (436)
T 2ix5_A 51 FNDLLTPEEQAIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAIATAEIARVDA 130 (436)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCGGGHHHHHTTTCTTTTCCSTTCCCCCHHHHHHHHHHHHHHCH
T ss_pred cCCCCCHHHHHHHHHHHHHHHhhCChhhHHHHhcCCCCHHHHHHHHHcCCCcCcCCCCCCCCCCHHHHHHHHHHHHhhCc
Confidence 4557899999999999999998998888777777899999999999998
Q ss_pred --------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCC
Q psy5140 50 --------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNAD 91 (120)
Q Consensus 50 --------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~ 91 (120)
++|++++||++||+...+.|+|+++++||+|||+|.|+||+.
T Consensus 131 ~~~~~~~~~~~~~~~~l~~~gt~~qk~~~l~~l~~G~~~~a~a~tEp~~GSd~~~~~t~A~~~gdg~vLnG~K~~is~a~ 210 (436)
T 2ix5_A 131 SCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNST 210 (436)
T ss_dssp HHHHHHHHHHTTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTT
T ss_pred cHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCCcccceEEEEEeCCEEEEeeeccCCCCCc
Confidence 789999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 92 IANIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 92 ~a~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
.||+++|.|++++. .++++|+ ||++
T Consensus 211 ~Ad~~lv~Ar~~~~---~~~~~fl-V~~~ 235 (436)
T 2ix5_A 211 FADLLIIFARNTTT---NQINGFI-VKKD 235 (436)
T ss_dssp TCSEEEEEEEETTT---SSEEEEE-EETT
T ss_pred ccCEEEEEEEECCC---CcEEEEE-EECC
Confidence 99999999998632 4688999 9974
No 20
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus}
Probab=99.91 E-value=4.7e-24 Score=151.80 Aligned_cols=115 Identities=27% Similarity=0.481 Sum_probs=102.5
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-------------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG------------------------------- 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------- 49 (120)
|+|.+++++.++++.+++|+.+++.+...+.|+.+.+|.++|+.|++.|
T Consensus 7 ~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~ 86 (385)
T 2eba_A 7 LEDLLTPEEKEVQKAARRFLEKEALPHIRDWWEEGVFPTHLIPRFAELGFLGPTLPPEYGGAGVSSAAYGLICYELERVD 86 (385)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCGGGHHHHHHHTCSSTTSCGGGTCCCCCHHHHHHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhCCccHHHHHHhCCCCHHHHHHHHHCCCcCCCCchhhCCCCCCHHHHHHHHHHHHHhC
Confidence 6778899999999999999998899888888888899999999999998
Q ss_pred ---------------------------------------ceEEEeeCCCCCCCC-CcceeEEEEeCCEEEEEeEeeeeeC
Q psy5140 50 ---------------------------------------AGSFALSEPGSGSDA-FAMKTTATKDGNHYILNGSKMWISN 89 (120)
Q Consensus 50 ---------------------------------------~~~~~~~e~~~g~~~-~~~~~~a~~~~~g~~l~G~k~~v~~ 89 (120)
++|++++||.+||++ ..++|+|+++++||+|||+|.|+||
T Consensus 87 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~~t~A~~~~~g~~lnG~K~~~s~ 166 (385)
T 2eba_A 87 SGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWITN 166 (385)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCCTTCTTSTTTTCCCEEEC--CEEEEEEEEEEEET
T ss_pred chHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCcCCCccccCeeEEEEeCCEEEEEeeeeccCC
Confidence 789999999999999 8999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 90 ADIANIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 90 ~~~a~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
+..||+++|.|++++ + .+++|+ ||++
T Consensus 167 ~~~Ad~~~v~a~~~~--g--~~~~fl-V~~~ 192 (385)
T 2eba_A 167 GNLAHLAVIWAKDEG--G--EVLGFL-VPTD 192 (385)
T ss_dssp TTTCSEEEEEEECC-------EEEEE-EETT
T ss_pred CcccCEEEEEEEeCC--C--cEEEEE-EeCC
Confidence 999999999999752 2 288999 9964
No 21
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus}
Probab=99.91 E-value=1.6e-23 Score=148.46 Aligned_cols=112 Identities=30% Similarity=0.520 Sum_probs=102.3
Q ss_pred CCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC---------------------------------
Q psy5140 3 MAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG--------------------------------- 49 (120)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G--------------------------------- 49 (120)
|.+++++.++++.+++|+++.+.+...+.|+.+.+|.++|+.|++.|
T Consensus 1 ~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~ 80 (372)
T 2dvl_A 1 MTLTQEQRLVLDAVRRVAREVLYPLAPEYDRKAEYPWPQLKALAELGLLGMTTPEEWGGVGLDSVTWALALEELAAADPS 80 (372)
T ss_dssp --CCHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCCHHHHHHHHHTTGGGTTSCGGGTSCCCCHHHHHHHHHHHHHHCHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHHhcCcH
Confidence 45789999999999999998888887778888999999999999998
Q ss_pred -------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCCC
Q psy5140 50 -------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 92 (120)
Q Consensus 50 -------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~ 92 (120)
++|++++||.+|||...+.|+|+++++||+|||+|.|+||+..
T Consensus 81 ~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~ 160 (372)
T 2dvl_A 81 VAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGH 160 (372)
T ss_dssp HHHHHHHHTSHHHHHHHHHCCHHHHHHTHHHHHTTSSCEEEECCCSSCSSCGGGCCCEEEEETTEEEEEEEEEEEETTTT
T ss_pred HHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEeEEEeecCCCc
Confidence 7899999999999999999999999999999999999999999
Q ss_pred CCEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 93 ANIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 93 a~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
||+++|.|++++ ++++|+ ||++
T Consensus 161 Ad~~~v~a~~~~-----g~~~fl-V~~~ 182 (372)
T 2dvl_A 161 AHLYVVMARTEK-----GISAFL-VEKG 182 (372)
T ss_dssp CSEEEEEEEETT-----EEEEEE-EETT
T ss_pred CCEEEEEEEeCC-----CcEEEE-EeCC
Confidence 999999999852 688999 9964
No 22
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A*
Probab=99.90 E-value=2.4e-23 Score=148.43 Aligned_cols=115 Identities=27% Similarity=0.432 Sum_probs=105.1
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-------------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG------------------------------- 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------- 49 (120)
|+|.++++++++++.+++|+++.+.+...+.++.+.+|.++|+.|++.|
T Consensus 10 m~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~~~~GG~g~~~~~~~~~~eel~~~~~ 89 (392)
T 1siq_A 10 LEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGCAGVSSVAYGLLARELERVDS 89 (392)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCTHHHHHHHHTTCSSTTCEETTEECCCHHHHHHHHHHHHTTCH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHhCCCCcccHHhhCCCCCCHHHHHHHHHHHHHhCc
Confidence 6778899999999999999998898888778888899999999999987
Q ss_pred --------------------------------------ceEEEeeCCCCCCCCCcceeEEEEe--CCEEEEEeEeeeeeC
Q psy5140 50 --------------------------------------AGSFALSEPGSGSDAFAMKTTATKD--GNHYILNGSKMWISN 89 (120)
Q Consensus 50 --------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~--~~g~~l~G~k~~v~~ 89 (120)
++|++++||.+||++..+.|+|+++ ++||+|||+|.|+||
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~~~g~~lnG~K~~vs~ 169 (392)
T 1siq_A 90 GYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITN 169 (392)
T ss_dssp HHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEEEEEEEEET
T ss_pred HHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEECCCCCCcCccccEEEEEEeCCCCEEEEEEEEEeecC
Confidence 7899999999999999999999999 999999999999999
Q ss_pred CCCCCEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 90 ADIANIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 90 ~~~a~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
+..||+++|.|++++ .++++|+ ||++
T Consensus 170 ~~~Ad~~~v~a~~~~----g~~~~fl-V~~~ 195 (392)
T 1siq_A 170 SPMADLFVVWARCED----GCIRGFL-LEKG 195 (392)
T ss_dssp GGGCSEEEEEEEETT----SCEEEEE-EETT
T ss_pred CcccCEEEEEEEECC----CCEEEEE-EeCC
Confidence 999999999999852 2478999 9964
No 23
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina}
Probab=99.89 E-value=4.8e-23 Score=148.71 Aligned_cols=118 Identities=19% Similarity=0.347 Sum_probs=101.2
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhhhhh----hhc-Ccc--HHHHHHHhhcC------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQKME----SEE-KID--ETVLKTLFESG------------------------ 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~~-~~~--~~~~~~l~~~G------------------------ 49 (120)
|+|.++++++++++.+|+|+++++.|...+.+ +.. .+| .++|+.|++.|
T Consensus 3 m~~~~~~e~~~l~~~~r~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~ 82 (438)
T 3mkh_A 3 IDFHLSASQKGTYQAARSLARNLLMPARQTYLQHPPNSPLRFQSTQPTYAAAVSAGILKGQISPAHGGTGGTLIESAILV 82 (438)
T ss_dssp CBCCCCHHHHHHHHHHHHHHHHTHHHHHHHHTTSCTTCHHHHHTTHHHHHHHHHTTTTGGGSCGGGTCCCCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCcHHHHHhhccccccCcCCCcHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHH
Confidence 78999999999999999999998888766543 233 676 89999999998
Q ss_pred ----------------------------------------------ceEEEeeCCCCCC-----CCCcceeEEEEeCCEE
Q psy5140 50 ----------------------------------------------AGSFALSEPGSGS-----DAFAMKTTATKDGNHY 78 (120)
Q Consensus 50 ----------------------------------------------~~~~~~~e~~~g~-----~~~~~~~~a~~~~~g~ 78 (120)
++|++++||.+|| |+..++|+|+++++||
T Consensus 83 eela~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~l~~~~~G~g~~~~~~a~tEp~~gs~~~~sd~~~~~t~A~~~g~g~ 162 (438)
T 3mkh_A 83 EECYSVEPSAALTIFATGLGLTPINLAAGPQHAEFLAPFLSGEGSPLASLVFSEPGGVANALEKGAPGFQTTARLEGDEW 162 (438)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHCCGGGHHHHGGGSSSCSCCCEEEECCCTTCCTTTTCTTSCCCSCEEEEETTEE
T ss_pred HHHHhhChhHHHHHHHhhHHHHHHHhhCCHHHHHHHHHHhcCCCCceEEEEEccCCCCCCccccccccceeEEEEeCCEE
Confidence 4789999999987 5888999999999999
Q ss_pred EEEeEeeeeeCCC-----CCCEEEEEEEeCC------CCCCcceEEEEEeeC
Q psy5140 79 ILNGSKMWISNAD-----IANIFLVMANVDV------SKGKVTKGLFSSIPT 119 (120)
Q Consensus 79 ~l~G~k~~v~~~~-----~a~~~~v~a~~~~------~~~~~~~~~~~~V~~ 119 (120)
+|||+|.|+||+. .||+++|+|++.. .++..++++|+ ||+
T Consensus 163 ~lnG~K~~is~a~~~~~~~Ad~~~v~a~~~~~~~~~~~~~~~g~~~fl-V~~ 213 (438)
T 3mkh_A 163 VINGEKMWATNCAGWDFKGCDLACVVCRDATTPLEEGQDPENKVMIIL-VTR 213 (438)
T ss_dssp EEEEEECSCTTTTCTTSSCCSEEEEEEEECSSCCCTTCCGGGGEEEEE-EEH
T ss_pred EEEeEEEEecCCCccccccCcEEEEEEEecCcccCcccCCCCceEEEE-Eec
Confidence 9999999999997 8999999999853 12245799999 984
No 24
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens}
Probab=99.89 E-value=9.6e-23 Score=146.89 Aligned_cols=119 Identities=19% Similarity=0.369 Sum_probs=97.6
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhh---hhhhh-----c-----CccHHHHHHHhhcC------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQ---KMESE-----E-----KIDETVLKTLFESG------------------ 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~-----~-----~~~~~~~~~l~~~G------------------ 49 (120)
|+|.+++++.++++.+++|+++++.|... +.++. . .++.++|+.|++.|
T Consensus 19 m~~~~~~e~~~l~~~~r~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~G~g~~~~~~~ 98 (428)
T 2wbi_A 19 QLFVQTRKGQEVLIKVKHFMKQHILPAEKEVTEFYVQNENSVDKWGKPLVIDKLKEMAKVEGLWNLFLPAVSGLSHVDYA 98 (428)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTHHHHHHHHHC----------CCSCCHHHHHHHHHHHHTTCCSTTCHHHHCCCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhhCCchhcchhHHhhhccccccccCCcccHHHHHHHHHHCCCCeecCCCCCCCCHHHHH
Confidence 78999999999999999999988877655 44422 1 25688999999987
Q ss_pred --------------------------------------------------ceEEEeeCCC-CCCCCCcceeEEEEeCCEE
Q psy5140 50 --------------------------------------------------AGSFALSEPG-SGSDAFAMKTTATKDGNHY 78 (120)
Q Consensus 50 --------------------------------------------------~~~~~~~e~~-~g~~~~~~~~~a~~~~~g~ 78 (120)
++|++++||. +||+...+.|+|+++++||
T Consensus 99 ~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~G~~~~~~a~tEp~~aGsd~~~~~t~A~~~~~g~ 178 (428)
T 2wbi_A 99 LIAEETGKCFFAPDVFNCQAPDTGNMEVLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDEDSY 178 (428)
T ss_dssp HHHHHHTTSTTHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHHTSSEEEEECCCTTSCTTSGGGCCCEEEEETTEE
T ss_pred HHHHHHHhhcchhhhHhhhccchhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEEecCCcCCCCcccceEEEEEeCCEE
Confidence 6899999999 9999999999999999999
Q ss_pred EEEeEeeeeeCCCC--CCEEEEEEEeCCC--CCCcceEEEEEeeCC
Q psy5140 79 ILNGSKMWISNADI--ANIFLVMANVDVS--KGKVTKGLFSSIPTG 120 (120)
Q Consensus 79 ~l~G~k~~v~~~~~--a~~~~v~a~~~~~--~~~~~~~~~~~V~~~ 120 (120)
+|||+|.|+||+.. ||+++|.|+++++ ++..++++|+ ||++
T Consensus 179 ~lnG~K~~is~a~~~~Ad~~~v~art~~~~~~~~~g~~~fl-V~~~ 223 (428)
T 2wbi_A 179 VINGKKWWSSGAGNPKCKIAIVLGRTQNTSLSRHKQHSMIL-VPMN 223 (428)
T ss_dssp EEEEEEEEEETTTSTTEEEEEEEEECCCTTSCGGGCEEEEE-EETT
T ss_pred EEEeEEeccCCCCCCcCCEEEEEEEeCCccCCCCCceEEEE-EECC
Confidence 99999999999988 9999999998643 2345789999 9974
No 25
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*
Probab=99.88 E-value=2.9e-22 Score=144.71 Aligned_cols=118 Identities=19% Similarity=0.313 Sum_probs=101.1
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhhhhhhh----cCcc--HHHHHHHhhcC-------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQKMESE----EKID--ETVLKTLFESG------------------------- 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~----~~~~--~~~~~~l~~~G------------------------- 49 (120)
|+|.+++++.++++.+++|+++++.|...+.|+. +.+| .++|+.|++.|
T Consensus 2 M~~~~~~e~~~l~~~~r~f~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~e 81 (439)
T 2c12_A 2 VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILE 81 (439)
T ss_dssp CBCCCCHHHHHHHHHHHHHHHHTGGGHHHHHTTCSSHHHHHHTTHHHHHHHHHTTTTGGGSBGGGTCCBCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCChhHHHHhhcccccCCCCChHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHH
Confidence 8999999999999999999999888877665542 4566 89999999998
Q ss_pred ----------------------------------------------ceEEEeeCCCCCC-----CCCcceeEEEEeCCEE
Q psy5140 50 ----------------------------------------------AGSFALSEPGSGS-----DAFAMKTTATKDGNHY 78 (120)
Q Consensus 50 ----------------------------------------------~~~~~~~e~~~g~-----~~~~~~~~a~~~~~g~ 78 (120)
++|++++||.+|| |...++|+|+++++||
T Consensus 82 ela~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~~~G~~~~~~a~tEp~~Gs~~~~sd~~~~~t~A~~~~~g~ 161 (439)
T 2c12_A 82 ELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEW 161 (439)
T ss_dssp HHHTTCCTTHHHHHHHHHHHHHHHHSSCHHHHHHHTGGGGSSCSCCCEEEECCCTTCSTTTTCTTSCCCSCEEEEETTEE
T ss_pred HHHhhChHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHhhcCCCEEEEEEecCCCCCCCccccccccceeEEEEcCCEE
Confidence 3688999999887 4777899999999999
Q ss_pred EEEeEeeeeeCCC-----CCCEEEEEEEe-C----CC----CCCcceEEEEEeeC
Q psy5140 79 ILNGSKMWISNAD-----IANIFLVMANV-D----VS----KGKVTKGLFSSIPT 119 (120)
Q Consensus 79 ~l~G~k~~v~~~~-----~a~~~~v~a~~-~----~~----~~~~~~~~~~~V~~ 119 (120)
+|||+|.|+||+. .||+++|.|++ + ++ ++..++++|+ ||+
T Consensus 162 ~lnG~K~~is~~~~~~~~~Ad~~~v~ar~~~~~~~~~~~~~~~~~g~~~fl-V~~ 215 (439)
T 2c12_A 162 VISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLL-VTR 215 (439)
T ss_dssp EEEEEEECCTTTTTTTSSCCSEEEEEEEECSCTTSCCCTTSCGGGGEEEEE-ECH
T ss_pred EEEeEEEeecCCCccccccCcEEEEEEEcCCcccCccccccCCCCceEEEE-EEC
Confidence 9999999999997 89999999998 5 22 2345789999 985
No 26
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}
Probab=99.88 E-value=2.9e-22 Score=149.49 Aligned_cols=113 Identities=33% Similarity=0.530 Sum_probs=101.0
Q ss_pred CCCCchHHHHHHHHHHHHHhhCCchhhhhhhhc-CccHHHHHHHhhcC--------------------------------
Q psy5140 3 MAYKGLGRDRLNIIAKLAKETIAPYVQKMESEE-KIDETVLKTLFESG-------------------------------- 49 (120)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~l~~~G-------------------------------- 49 (120)
..+++++.++++.+++|+.+++.|...+.++.. .+|.++|+.|++.|
T Consensus 31 ~~lt~eq~~l~~~vr~f~~~~~~p~~~~~d~~~~~~~~~~~~~l~e~Gl~gl~vPee~GG~G~~~~~~~~v~Eel~~~~~ 110 (597)
T 3owa_A 31 EDFSSEHKMIAKTTEDFIVNEVLPELEYLEQHEFDRSVRLLKEAGELGLLGADVPEEYGGIGLDKVSSALIAEKFSRAGG 110 (597)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHTGGGHHHHTTTCHHHHHHHHHHHHHTTTTCTTSCGGGTCCCCCHHHHHHHHHHHGGGTH
T ss_pred cCCCHHHHHHHHHHHHHHHHhCchhHHHHHhcCCcCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHccch
Confidence 357889999999999999999998887777665 68999999999998
Q ss_pred -------------------------------------ceEEEeeCCCCCCCCCcceeEEEEe--CCEEEEEeEeeeeeCC
Q psy5140 50 -------------------------------------AGSFALSEPGSGSDAFAMKTTATKD--GNHYILNGSKMWISNA 90 (120)
Q Consensus 50 -------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~--~~g~~l~G~k~~v~~~ 90 (120)
++|++++||++|||+.+++|+|+++ +++|+|||+|.||||+
T Consensus 111 ~~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~la~Ge~~~a~alTEp~aGSD~~~~~T~A~~~~dG~~yvLnG~K~~is~a 190 (597)
T 3owa_A 111 FAITHGAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWITNS 190 (597)
T ss_dssp HHHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECTTSSEEEEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCcceeeEecCCCCCCCcccceeEEEEeCCCCEEEEeeEEEEeCCC
Confidence 7899999999999999999999985 4469999999999999
Q ss_pred CCCCEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 91 DIANIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 91 ~~a~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
..||+++|+|++++ .++++|+ ||++
T Consensus 191 ~~Ad~~lV~Art~~----~g~s~fl-V~~~ 215 (597)
T 3owa_A 191 AFADVFIVYAKIDG----EHFSAFI-VEKD 215 (597)
T ss_dssp TTCSEEEEEEEETT----TEEEEEE-EETT
T ss_pred ccCCEEEEEEEeCC----CceEEEE-EeCC
Confidence 99999999999863 4789999 9974
No 27
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus}
Probab=99.85 E-value=9.9e-21 Score=140.84 Aligned_cols=112 Identities=36% Similarity=0.579 Sum_probs=97.4
Q ss_pred CCCchHHHHHHHHHHHHHhhCCchhhhhhh-hcCccHHHHHHHhhcC---------------------------------
Q psy5140 4 AYKGLGRDRLNIIAKLAKETIAPYVQKMES-EEKIDETVLKTLFESG--------------------------------- 49 (120)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~l~~~G--------------------------------- 49 (120)
.++++++++++.+++|+++.+.|...+.++ ...+|.++|+.|++.|
T Consensus 27 ~~~~e~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~l~e~Gl~~l~vPee~GG~g~~~~~~~~v~eel~~~~s~ 106 (577)
T 2z1q_A 27 DFDESVKEIARTTRTFVEREVLPLLERMEHGELELNVPLMRKAGELGLLAIDVPEEYGGLDLPKVISTVVAEELSGSGGF 106 (577)
T ss_dssp GCCHHHHHHHHHHHHHHHTTTHHHHHHHHTTCGGGHHHHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHHTTSCTH
T ss_pred CCCHHHHHHHHHHHHHHhccCchhHHhhhcccCCCCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHHhhcccH
Confidence 368899999999999999888877444432 3478999999999998
Q ss_pred ------------------------------------ceEEEeeCCCCCCCCCcceeEEEEe--CCEEEEEeEeeeeeCCC
Q psy5140 50 ------------------------------------AGSFALSEPGSGSDAFAMKTTATKD--GNHYILNGSKMWISNAD 91 (120)
Q Consensus 50 ------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~--~~g~~l~G~k~~v~~~~ 91 (120)
++|++++||++|||+..+.|+|+++ +++|+|||+|.||||+.
T Consensus 107 ~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~l~~G~~~~a~alTEp~aGSD~~~~~t~A~~~~dG~~~vLnG~K~~it~a~ 186 (577)
T 2z1q_A 107 SVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAAYCLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNAG 186 (577)
T ss_dssp HHHHHHHHTTTTHHHHHHCCHHHHHTTHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECTTSSEEEEEEEEEEEETTT
T ss_pred HHHHhhhHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccCeeEEEEeCCCCEEEEEEEeeCCCCCC
Confidence 8999999999999999999999984 45799999999999999
Q ss_pred CCCEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 92 IANIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 92 ~a~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
.||+++|+|++++ .++++|+ ||++
T Consensus 187 ~Ad~~~V~Ar~~g----~gis~fl-Vp~~ 210 (577)
T 2z1q_A 187 FAHLFTVFAKVDG----EHFTAFL-VERD 210 (577)
T ss_dssp TCSEEEEEEEETT----TEEEEEE-EETT
T ss_pred ccCEEEEEEEeCC----CeeEEEE-EeCC
Confidence 9999999999852 5789999 9974
No 28
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1
Probab=99.83 E-value=2.4e-20 Score=131.99 Aligned_cols=102 Identities=21% Similarity=0.346 Sum_probs=91.4
Q ss_pred HHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC--------------------------------------------
Q psy5140 14 NIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG-------------------------------------------- 49 (120)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G-------------------------------------------- 49 (120)
+.+++|+++++.+...+.|+.+.+|.++|+.|++.|
T Consensus 2 ~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~ 81 (366)
T 1r2j_A 2 PERDALLTDLVGDRAAEWDTSGELPRDLLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTSQGMA 81 (366)
T ss_dssp -CCHHHHHHHHSSCHHHHHHHTCCCHHHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhccccHHHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence 457889988888888888888999999999999998
Q ss_pred ------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCCCCCEEEEEEEeCCC
Q psy5140 50 ------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVS 105 (120)
Q Consensus 50 ------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~~~v~a~~~~~ 105 (120)
++|++++||.+|||+..+.|+|+++++||+|||+|.|+||+..||+++|.+++++
T Consensus 82 ~~~~l~~g~~~q~~~~l~~~~~G~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v~a~~~~- 160 (366)
T 1r2j_A 82 AWTVQRLGDAGQRATFLKELTSGKLAAVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQED- 160 (366)
T ss_dssp HHHHHHHSCHHHHHHHHHHTTCC-CEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEETTTTTCSEEEEEEBCSS-
T ss_pred HHHHHHhCCHHHHHHHHHHHhCCCeeEEEeCCCCCCCchhhCEeEEEEeCCEEEEEEEEecccCCcccCEEEEEEEeCC-
Confidence 4688999999999999999999999999999999999999999999999998753
Q ss_pred CCCcceEEEEEeeCC
Q psy5140 106 KGKVTKGLFSSIPTG 120 (120)
Q Consensus 106 ~~~~~~~~~~~V~~~ 120 (120)
.++++|+ ||++
T Consensus 161 ---~g~~~fl-V~~~ 171 (366)
T 1r2j_A 161 ---GSGAVVV-VPAD 171 (366)
T ss_dssp ---SCCEEEE-EETT
T ss_pred ---CceEEEE-EECC
Confidence 1789999 9974
No 29
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata}
Probab=99.83 E-value=2.7e-20 Score=134.40 Aligned_cols=113 Identities=14% Similarity=0.210 Sum_probs=95.8
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-------------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG------------------------------- 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------- 49 (120)
|+|.++++++++++.+++|++ .+.+...+.|+++.+|.++|+.|++.|
T Consensus 16 m~~~lt~e~~~l~~~~r~~~~-~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~gl~~~~~~~~v~eel~~~ 94 (439)
T 3m9v_A 16 LYAPVTPAGRVLLDRLAAHLP-RIRSTAAEHDRDGTFPTDTFDALRKDGLMGATVPAELGGLGVDRLYDVAVALLAVARA 94 (439)
T ss_dssp TSSCSSHHHHHHHHHHHTTHH-HHHHHHHHHHHHTCCCHHHHHHHHHTTGGGTTSCGGGTSCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH-HHhhhHHHHHhcCCCCHHHHHHHHHCCCccCCCChhhCCCCCCCHHHHHHHHHHHHhh
Confidence 899999999999999999997 578888889999999999999999998
Q ss_pred ---------------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEe
Q psy5140 50 ---------------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSK 84 (120)
Q Consensus 50 ---------------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k 84 (120)
++|++++||+++ ...+.+ +++|||+|||+|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~q~~~k~~~l~~l~~g~~~~~~a~tEp~~~--~~~~~t---~~~~g~vlnG~K 169 (439)
T 3m9v_A 95 DASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRGMVAGDAVVCSGIKDHHTA--VTTLRP---DGAGGWLLSGRK 169 (439)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTCCCEEEECEECTTC--CCEEEE---CSSSCEEEEEEE
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEeecCCCCC--CCceee---ccCCEEEEEeEE
Confidence 468899998753 333332 367889999999
Q ss_pred eeeeCCCCCCEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 85 MWISNADIANIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 85 ~~v~~~~~a~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
+|+||+.+||+++|.|+++++++..++++|+ ||++
T Consensus 170 ~~~s~a~~Ad~~~v~art~~~~~~~g~~~fl-Vp~~ 204 (439)
T 3m9v_A 170 TLVSMAPVGTHFVINARTDGTDGPPRLASPV-VTRD 204 (439)
T ss_dssp EEETTGGGCSEEEECEEECC--CCCCEEEEE-EETT
T ss_pred EeecCccccCEEEEEEEecCCCCCceeEEEE-EECC
Confidence 9999999999999999997654556799999 9974
No 30
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*
Probab=99.82 E-value=2.4e-19 Score=134.09 Aligned_cols=113 Identities=35% Similarity=0.566 Sum_probs=94.5
Q ss_pred CCchHH----HHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-------------------------------
Q psy5140 5 YKGLGR----DRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG------------------------------- 49 (120)
Q Consensus 5 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------- 49 (120)
+++++. ++++.+++|+++.+.+ .+.|+...+|.++|+.|++.|
T Consensus 46 l~~~~~~~~~~l~~~~~~~~~~~~~~--~~~d~~~~~p~~~~~~l~e~Gl~~l~~P~e~GG~gl~~~~~~~v~e~l~~~~ 123 (607)
T 2uxw_A 46 LNEEQTQFLKELVEPVSRFFEEVNDP--AKNDALEMVEETTWQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHD 123 (607)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTCCH--HHHHHHTSCCHHHHHHHHHTTTTCTTSCGGGTSCCCCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCH--HHhccccCCCHHHHHHHHHcCCcCCCCChhhCCCCCCHHHHHHHHHHHHHcc
Confidence 455553 4889999999977754 335677889999999999998
Q ss_pred ---------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeC--CEEEEEeEeeeee
Q psy5140 50 ---------------------------------------AGSFALSEPGSGSDAFAMKTTATKDG--NHYILNGSKMWIS 88 (120)
Q Consensus 50 ---------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~--~g~~l~G~k~~v~ 88 (120)
++|++++||.+|||+..+.|+|++++ ++|+|||+|.|||
T Consensus 124 ~s~a~~~~~~~~~g~~~l~~~Gt~eqk~~~Lp~l~~G~~~~~~alTEp~aGSD~~~~~t~A~~~~dG~~y~LnG~K~~is 203 (607)
T 2uxw_A 124 LGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWIS 203 (607)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEECTTSSEEEEEEEEEEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccceeEEEEeCCCCEEEEEeEEEeec
Confidence 89999999999999999999999873 4799999999999
Q ss_pred CCCCCCEEEEEEEeCCCC---C--CcceEEEEEeeCC
Q psy5140 89 NADIANIFLVMANVDVSK---G--KVTKGLFSSIPTG 120 (120)
Q Consensus 89 ~~~~a~~~~v~a~~~~~~---~--~~~~~~~~~V~~~ 120 (120)
++..||+++|+|++++.+ + ..++++|+ ||++
T Consensus 204 ~~~~Ad~~lV~Ar~~~~~~~~g~~~~gis~fl-Vp~~ 239 (607)
T 2uxw_A 204 NGGLADIFTVFAKTPVTDPATGAVKEKITAFV-VERG 239 (607)
T ss_dssp TTTTCSEEEEEEEEEEECTTTCCEEEEEEEEE-EEGG
T ss_pred CCcccCEEEEEEEecCCCcccCCCCCceEEEE-EeCC
Confidence 999999999999985321 1 35789999 9963
No 31
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP}
Probab=99.80 E-value=1.7e-19 Score=129.36 Aligned_cols=107 Identities=21% Similarity=0.166 Sum_probs=81.0
Q ss_pred CCCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC--------------------------------
Q psy5140 2 DMAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG-------------------------------- 49 (120)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G-------------------------------- 49 (120)
+|.+++++.++++.+++|+++ +.+...+.|+.+.+|.++|+.|++.|
T Consensus 15 ~~~~~~~~~~l~~~~r~~~~~-~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~ 93 (414)
T 2or0_A 15 ENLYFQGMGRVLDRIEVVAEE-IRGQAVQSEADCRLTDAAAGLLRDSGAIRLLQPRLYGGYEVHPREFAETVMGVAALDG 93 (414)
T ss_dssp --------CHHHHHHHHTHHH-HHHHHHHHHHHTSCCHHHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHHHHHCH
T ss_pred cCCCCccHHHHHHHHHHHHHH-HHHhHHHHHhcCCCCHHHHHHHHHCCCchhcCchhhCCCCCCHHHHHHHHHHHHhhCh
Confidence 577899999999999999985 88877778888999999999999998
Q ss_pred ----------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCCCCCE
Q psy5140 50 ----------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANI 95 (120)
Q Consensus 50 ----------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~ 95 (120)
++|+++ .+.++|+++++||+|||+|.|+||+..||+
T Consensus 94 ~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~g~~~~a~a~----------tp~t~A~~~~~g~~lnG~K~~is~a~~Ad~ 163 (414)
T 2or0_A 94 ASGWVTGIVGVHPWELAFADPQVQEEIWGEDNDTWMASPY----------APMGVATPVDGGYVLKGRWSFSSGTDHCQW 163 (414)
T ss_dssp HHHHHHHHHTTHHHHHTTSCHHHHHHHHSSCTTCCEECCC----------SCCEEEEEETTEEEEEEEEEEETTGGGCSE
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHccCCCeEEEecc----------CCCceeEEECCeEEEEeeEeccCCCchhhE
Confidence 122221 147899999999999999999999999999
Q ss_pred EEEEEEeCCCCCCc---ceEEEEEeeCC
Q psy5140 96 FLVMANVDVSKGKV---TKGLFSSIPTG 120 (120)
Q Consensus 96 ~~v~a~~~~~~~~~---~~~~~~~V~~~ 120 (120)
++|.|+++..++.. ++++|+ ||++
T Consensus 164 ~~v~a~~~~~~g~~~~~g~~~fl-V~~~ 190 (414)
T 2or0_A 164 AFLGAMVGDGEGGIATPSSLHVI-LPRT 190 (414)
T ss_dssp EEEEEEECC-----CCCSEEEEE-EEGG
T ss_pred EEEEEEecCCCCCcccceeEEEE-EEhh
Confidence 99999986432333 789999 9964
No 32
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea}
Probab=99.79 E-value=1e-19 Score=129.62 Aligned_cols=113 Identities=18% Similarity=0.231 Sum_probs=94.5
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-------------------------------
Q psy5140 1 MDMAYKGLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG------------------------------- 49 (120)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------- 49 (120)
|...+++++.++++.+++|++ .+.+...+.|+++.+|.++|+.|++.|
T Consensus 5 ~~~~lt~e~~~~~~~~r~~~~-~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~eel~~~ 83 (395)
T 3mxl_A 5 LRAPLTPAGRTVVDLLAGVIP-RISAEAADRDRTGTFPVEAFEQFAKLGLMGATVPAELGGLGLTRLYDVATALMRLAEA 83 (395)
T ss_dssp SSSCCSHHHHHHHHHHTTTHH-HHHHHHHHHHHHTCCCHHHHHHHHHHTGGGCSSCTTTTSCCCCCHHHHHHHHHHHHTT
T ss_pred cccCCCHHHHHHHHHHHHHHH-HHhhchHHHhhhCCCCHHHHHHHHHCCCcCcCCChhhCCCCCcCHHHHHHHHHHHHhh
Confidence 456789999999999999998 578888889999999999999999998
Q ss_pred ---------------------------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEe
Q psy5140 50 ---------------------------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSK 84 (120)
Q Consensus 50 ---------------------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k 84 (120)
++|++++||.+++ ..++ +++++||+|||+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~qk~~~~~~l~~~~~g~~~~~~a~tEp~~~~--~~~~---t~~~~g~~lnG~K 158 (395)
T 3mxl_A 84 DASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRAMAEGEAAVCGALKDAPGVV--TELH---SDGAGGWLLSGRK 158 (395)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHTSCCEECCCSBCTTCC--CEEE---ECSSSCEEEEEEE
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhcCCHHHHhHHHHHHHHHhcCCcEEEEEecCCCCCC--CceE---EecCCEEEEeeEE
Confidence 4677888887642 2222 2367889999999
Q ss_pred eeeeCCCCCCEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 85 MWISNADIANIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 85 ~~v~~~~~a~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
.|+||+..||+++|.|++++.++..++++|+ ||++
T Consensus 159 ~~is~a~~Ad~~~v~a~~~~~~~~~g~~~fl-V~~~ 193 (395)
T 3mxl_A 159 VLVSMAPIATHFFVHAQRRDDDGSVFLAVPV-VHRD 193 (395)
T ss_dssp EEETTGGGCSEECCCEEEECTTSCEEEECCC-EETT
T ss_pred EEecCccccCEEEEEEEeCCCCCCCceEEEE-EECC
Confidence 9999999999999999987655556789999 9974
No 33
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*
Probab=99.74 E-value=2e-18 Score=130.19 Aligned_cols=116 Identities=20% Similarity=0.206 Sum_probs=90.9
Q ss_pred CCCCC-chHHHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-------------------------------
Q psy5140 2 DMAYK-GLGRDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG------------------------------- 49 (120)
Q Consensus 2 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G------------------------------- 49 (120)
+|.++ +++.++++.+++|+.+.... ....+....++.+.|+.|++.|
T Consensus 23 ~~~~~~~e~~~lr~~vr~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~g~l~~~p~e~G~~~~~~~~v~e~~~~~~~~~~ 101 (659)
T 1w07_A 23 IVWAGSRHAFEVSDRIARLVASDPVF-EKSNRARLSRKELFKSTLRKCAHAFKRIIELRLNEEEAGRLRHFIDQPAYVDL 101 (659)
T ss_dssp HHHHSSHHHHHHHHHHHHHHHTCGGG-CCTTTTSSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHCCCCHHHH
T ss_pred HHHCCChHHHHHHHHHHHHHhcCccc-ccCCccCCChHHHHHHHHHHHHHHHHhHHHhCCCchHHHHHHHHhccchhhhh
Confidence 34455 77899999999999754322 1111222356677777776654
Q ss_pred ------------------------------ceEEEeeCCCCCCCCCcceeEEEEe--CCEEEEE-----eEeeeeeC-CC
Q psy5140 50 ------------------------------AGSFALSEPGSGSDAFAMKTTATKD--GNHYILN-----GSKMWISN-AD 91 (120)
Q Consensus 50 ------------------------------~~~~~~~e~~~g~~~~~~~~~a~~~--~~g~~l~-----G~k~~v~~-~~ 91 (120)
++|++++|+++|||+..++|+|+++ +++|+|| |+|+|++| +.
T Consensus 102 ~~~l~~~~l~~~Gt~eqk~~~L~~i~~Ge~~~~~a~TEp~~GSd~~~l~TtA~~d~~~~g~vLntP~~~G~K~~is~~a~ 181 (659)
T 1w07_A 102 HWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKWWPGGLGK 181 (659)
T ss_dssp HHHTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSGGGSEECCTTTTT
T ss_pred HHhHHHHHHHHcCCHHHHHHHhhHHhcCCEEEEEEecCCCCCCCcccceeEEEEcCCCCEEEEcCCCCCeEEEeecCCCC
Confidence 8999999999999999999999998 6899999 99999999 78
Q ss_pred CCCEEEEEEEeCCCCCCcceEEEEEeeC
Q psy5140 92 IANIFLVMANVDVSKGKVTKGLFSSIPT 119 (120)
Q Consensus 92 ~a~~~~v~a~~~~~~~~~~~~~~~~V~~ 119 (120)
.||+++|+|+++..++..|+++|+ ||.
T Consensus 182 ~Ad~~lV~Ar~~~~~~~~G~~~fl-Vp~ 208 (659)
T 1w07_A 182 VSTHAVVYARLITNGKDYGIHGFI-VQL 208 (659)
T ss_dssp TCSEEEEEEEEEETTEEEEEEEEE-EEC
T ss_pred CCCEEEEEEEECCCCCCCCeEEEE-EEc
Confidence 999999999986433345789999 993
No 34
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A
Probab=99.71 E-value=4.7e-17 Score=115.87 Aligned_cols=98 Identities=22% Similarity=0.231 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC-----------------------------------------
Q psy5140 11 DRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG----------------------------------------- 49 (120)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G----------------------------------------- 49 (120)
++++.+++|++ .+.+...+.|+.+.+|.++|+.|++.|
T Consensus 11 ~l~~~~~~~~~-~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~ 89 (394)
T 2rfq_A 11 EVMQRLDALLP-TLRERAQETEDLRRIPDDSMKALQETGFFRLLQPEQWGGYQADPVLFYSAVRKIASACGSTGWVSSII 89 (394)
T ss_dssp HHHHHHHHHHH-HHHHTHHHHHHHTSCCHHHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHhHHHHHhcCCCCHHHHHHHHHCCCceecCchhhCCCCCCHHHHHHHHHHHHhhChhHHHHHHHH
Confidence 68999999997 577877778888999999999999998
Q ss_pred -------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCCCCCEEEEEEEeCC
Q psy5140 50 -------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDV 104 (120)
Q Consensus 50 -------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~~~v~a~~~~ 104 (120)
++|++++ +.++|+++++||+|||+|.|+||+..||+++|.|+++.
T Consensus 90 ~~~~~~l~~~g~~~q~~~~l~~g~~~~~~a~t----------p~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~~ 159 (394)
T 2rfq_A 90 GVHNWHLALFSQQAQEDVWGNDTDVRISSSYA----------PMGAGQVVDGGYTVNGAWAWSSGCDHASWAVLGGPVIK 159 (394)
T ss_dssp HHHHHHHTTSCHHHHHHHHSSCTTCCEEEECS----------CSEEEEEETTEEEEEEEEEEETTGGGCSEEEEEEEEEE
T ss_pred HHHHHHHHhCCHHHHHHHhCCCCCeEEEeccC----------CCceEEEeCCeEEEeeeEeccCCCcccceEEEeeeecC
Confidence 2333333 36889999999999999999999999999999999832
Q ss_pred CCCCcceEEEEEeeCC
Q psy5140 105 SKGKVTKGLFSSIPTG 120 (120)
Q Consensus 105 ~~~~~~~~~~~~V~~~ 120 (120)
++...++++|+ ||++
T Consensus 160 ~g~~~~~~~fl-V~~~ 174 (394)
T 2rfq_A 160 DGRPVDFVSFL-IPRE 174 (394)
T ss_dssp TTEEEEEEEEE-EEGG
T ss_pred CCCCCceeEEE-EEhh
Confidence 22234789999 9964
No 35
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A*
Probab=99.71 E-value=7.3e-17 Score=115.98 Aligned_cols=99 Identities=23% Similarity=0.223 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHhhCCchhhhhhhhcCccHHHHHHHhhcC----------------------------------------
Q psy5140 10 RDRLNIIAKLAKETIAPYVQKMESEEKIDETVLKTLFESG---------------------------------------- 49 (120)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G---------------------------------------- 49 (120)
.++++.+++|++ .+.+...+.|+.+.+|.++|+.|++.|
T Consensus 38 ~~l~~~~r~~~~-~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~~~~~~~~~ 116 (422)
T 2jbr_A 38 VSMLEKIQQILP-QIAKNAESAEQLRRVPDENIKLLKEIGLHRAFQPKVYGGLEMSLPDFANCIVTLAGACAGTAWAFSL 116 (422)
T ss_dssp CCHHHHHHHHHH-HHHHTHHHHHHHTSCCHHHHHHHHHTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHhhHHHHHcCCCCHHHHHHHHHCCchhcCCchhcCCCCCCHHHHHHHHHHHHhhCcCHHHHHHH
Confidence 468999999997 577777778888999999999999998
Q ss_pred --------------------------ceEEEeeCCCCCCCCCcceeEEEEeCCEEEEEeEeeeeeCCCCCCEEEEEEEeC
Q psy5140 50 --------------------------AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVD 103 (120)
Q Consensus 50 --------------------------~~~~~~~e~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~~~v~a~~~ 103 (120)
++|++++ +.++|+++++||+|||+|.|+||+..||+++|.|+++
T Consensus 117 ~~~~~~~l~~~g~~~q~~~~l~~g~~~~a~a~t----------p~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~ 186 (422)
T 2jbr_A 117 LCTHSHQIAMFSKQLQDEIWLKDPDATASSSIA----------PFGKVEEVEGGIILNGDYGWSSGCDHAEYAIVGFNRF 186 (422)
T ss_dssp HHHHHHHHTTSCHHHHHHHHTTCTTCCEEEECS----------CCSEEEEETTEEEEEEEEEEETTGGGCSEEEEEEEEE
T ss_pred HHHHHHHHHhCCHHHHHHHHccCCCeEEEeecC----------CCeeEEEeCCEEEEeeeEeeecCCccccEEEEEEEec
Confidence 2344333 3678999999999999999999999999999999986
Q ss_pred CCCCCcceEEEEEeeCC
Q psy5140 104 VSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 104 ~~~~~~~~~~~~~V~~~ 120 (120)
+.++..++++|+ ||++
T Consensus 187 ~~~g~~g~~~fl-V~~~ 202 (422)
T 2jbr_A 187 DADGNKIYSFGV-IPRS 202 (422)
T ss_dssp CTTSCEEEEEEE-EEGG
T ss_pred CCCCCceeEEEE-EEcC
Confidence 433445789999 9964
No 36
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A*
Probab=99.58 E-value=4.6e-15 Score=109.77 Aligned_cols=64 Identities=25% Similarity=0.307 Sum_probs=59.3
Q ss_pred ceEEEeeCCCCCCCCCcceeEEEEe-CCEEEEEeEeeeeeCCCCCCEEEEEEEeCCCCCCcceEEEEEeeCC
Q psy5140 50 AGSFALSEPGSGSDAFAMKTTATKD-GNHYILNGSKMWISNADIANIFLVMANVDVSKGKVTKGLFSSIPTG 120 (120)
Q Consensus 50 ~~~~~~~e~~~g~~~~~~~~~a~~~-~~g~~l~G~k~~v~~~~~a~~~~v~a~~~~~~~~~~~~~~~~V~~~ 120 (120)
++|+++|||++|||+..++|+|+++ +|+|+|||+|+|+| +..||+++|.|+++ .|+++|+ ||++
T Consensus 179 ~~~~a~TEp~~GSDl~~~~T~A~~~~~g~y~LnG~K~f~S-a~~Ad~~lVlArt~-----~Gis~fl-Vp~~ 243 (541)
T 3djl_A 179 LIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWFFS-VPQSDAHLVLAQTA-----GGLSCFF-VPRF 243 (541)
T ss_dssp CEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEEEE-CTTSSEEEEEEEET-----TEEEEEE-EESB
T ss_pred eeEEEeccCCcCCCcccceeEEEEcCCCeEEEEEEEEeec-ccccCEEEEEEEEC-----CceEEEE-EecC
Confidence 4799999999999999999999999 78899999999999 89999999999985 5799999 9973
No 37
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
Probab=99.51 E-value=1.9e-14 Score=108.59 Aligned_cols=68 Identities=29% Similarity=0.448 Sum_probs=61.5
Q ss_pred ceEEEeeCCCCCCCCCcceeEEEEe--CCEEEEE-----eEeeeeeC-CCCCCEEEEEEEeCCCCCCcceEEEEEee
Q psy5140 50 AGSFALSEPGSGSDAFAMKTTATKD--GNHYILN-----GSKMWISN-ADIANIFLVMANVDVSKGKVTKGLFSSIP 118 (120)
Q Consensus 50 ~~~~~~~e~~~g~~~~~~~~~a~~~--~~g~~l~-----G~k~~v~~-~~~a~~~~v~a~~~~~~~~~~~~~~~~V~ 118 (120)
++|++++|+++|||+.+++|+|+++ +++|+|| |+|+|++| +..||+++|+|++..+++..|+++|+ ||
T Consensus 133 ~g~~a~TE~g~GSd~~~l~TtA~~d~~~~~~vLntP~~~G~K~wis~~a~~Ad~~vV~Ar~~~~~~~~G~~~Fl-Vp 208 (661)
T 2ddh_A 133 TGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFV-VP 208 (661)
T ss_dssp CEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSSTTSEECCTTTTTTCSEEEEEEEEEETTEEEEEEEEE-EE
T ss_pred eEEEeeccCCcCcCcccceeEEEEcCCCCeEEEcCCCCCeEEEecCCCcccCCEEEEEEEEccCCCCCceEEEE-Ee
Confidence 7999999999999999999999998 7899999 99999999 78999999999986433346789999 99
No 38
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*
Probab=99.49 E-value=8.7e-14 Score=101.68 Aligned_cols=68 Identities=18% Similarity=0.343 Sum_probs=55.4
Q ss_pred ceEEEeeCCCCC--------CCCCcceeEEE-EeCCEEEEEeEeeeeeCCCCCCEEEEEEEeCCC-CCCcceEEEEEeeC
Q psy5140 50 AGSFALSEPGSG--------SDAFAMKTTAT-KDGNHYILNGSKMWISNADIANIFLVMANVDVS-KGKVTKGLFSSIPT 119 (120)
Q Consensus 50 ~~~~~~~e~~~g--------~~~~~~~~~a~-~~~~g~~l~G~k~~v~~~~~a~~~~v~a~~~~~-~~~~~~~~~~~V~~ 119 (120)
++|++++||..| +|+. +.+++. ++++||+|||+|+|+|| ..||+++|+++++.. +...++++|+ ||+
T Consensus 139 ~~a~a~TEP~~grs~~~s~gsd~~-~~~~~~~~~gdg~VlnG~K~~iT~-~~Ad~~iV~art~~~~~~~~~~s~fl-Vp~ 215 (481)
T 2yyk_A 139 ATTHALTNPQVNRARPPSGQPDPY-IPVGVVKQTEKGIVVRGARMTATF-PLADEVLIFPSILLQAGSEKYALAFA-LPT 215 (481)
T ss_dssp CEEEEECCCCCCTTC----CCCSC-SBCEEEEECSSEEEEEEEEEEEEC-CCSSEEEECCCSCCCTTCGGGCEEEE-EET
T ss_pred EEEEeeECCCCCCCCCccccCCcc-cceEEEEEECCEEEEEeEEEEecc-ccccEEEEEEecCCCCCCCCeEEEEE-EEC
Confidence 799999999876 5554 556664 68899999999999999 999999999998632 2234589999 997
Q ss_pred C
Q psy5140 120 G 120 (120)
Q Consensus 120 ~ 120 (120)
+
T Consensus 216 d 216 (481)
T 2yyk_A 216 S 216 (481)
T ss_dssp T
T ss_pred C
Confidence 5
No 39
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1
Probab=99.48 E-value=6.3e-14 Score=102.62 Aligned_cols=69 Identities=14% Similarity=0.260 Sum_probs=56.0
Q ss_pred ceEEEeeCCCCC--------CCC-CcceeEEEEeCCEEEEEeEeeeeeCCCCCCEEEEEEEeCCC-CCCcceEEEEEeeC
Q psy5140 50 AGSFALSEPGSG--------SDA-FAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVS-KGKVTKGLFSSIPT 119 (120)
Q Consensus 50 ~~~~~~~e~~~g--------~~~-~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~~~v~a~~~~~-~~~~~~~~~~~V~~ 119 (120)
++|++++||..+ ||+ ..++ +++++++||+|||+|+|+||+..||+++|+++++.. +...+.++|+ ||.
T Consensus 144 ~~a~a~TEP~~~rs~~~~~gSD~~~~~~-~a~r~gdg~vlnG~K~~iT~a~~Ad~~iV~art~~~~~~~~~~s~fl-Vp~ 221 (490)
T 1u8v_A 144 IVDGAMTDPKGDRGLAPSAQKDPDLFLR-IVEKREDGIVVRGAKAHQTGSINSHEHIIMPTIAMTEADKDYAVSFA-CPS 221 (490)
T ss_dssp CEEEECCCCCSCTTSCGGGCSSTTSSCE-EEEECSSEEEEEEEECSCTTCTTCSEEEECCSSCCCGGGGGGCEEEE-EET
T ss_pred eeeeeeeCCCCCCcccccccCCcccceE-EEEEECCEEEEEeEEEEeeCCcccCEEEEEEecCCCCCCCCeEEEEE-EEC
Confidence 899999999864 564 3344 788999999999999999999999999999987532 1223578999 997
Q ss_pred C
Q psy5140 120 G 120 (120)
Q Consensus 120 ~ 120 (120)
+
T Consensus 222 d 222 (490)
T 1u8v_A 222 D 222 (490)
T ss_dssp T
T ss_pred C
Confidence 5
No 40
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia}
Probab=99.38 E-value=7.5e-13 Score=97.32 Aligned_cols=67 Identities=15% Similarity=0.216 Sum_probs=53.1
Q ss_pred ceEEEeeCCCC--------CCCCCcceeEEEEeCCEEEEEeEeeeeeCCCCCCEEEEEEEeCC-CCCCcceEEEEEeeCC
Q psy5140 50 AGSFALSEPGS--------GSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDV-SKGKVTKGLFSSIPTG 120 (120)
Q Consensus 50 ~~~~~~~e~~~--------g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~~~v~a~~~~-~~~~~~~~~~~~V~~~ 120 (120)
+++++++||.. |||+ .++++ .+.++||+|||+|.|+||+..||+++|++++++ .++. .+++|+ ||++
T Consensus 148 ~~a~AltEP~~~rs~~~~~GSD~-~~~~~-~~~gdg~VlnG~K~~iT~a~~Ad~~lV~a~t~~~~~~~-~~s~Fl-Vp~d 223 (515)
T 3hwc_A 148 NCPLNFVDPQTDRSSDAAQARSP-NLRIV-EKTDDGIIVNGVKAVGTGIAFGDYMHIGCLYRPGIPGE-QVIFAA-IPTN 223 (515)
T ss_dssp CCCEECCCCCCCCCSCTTTSCCS-BCEEE-EECSSEEEEEEEEEEEESGGGCSEEEECCCCCTTCCGG-GCEEEE-EETT
T ss_pred EEEEEeeCCCCCcccccccCCCc-ceEEE-EEECCEEEEEEEEEEECCccccCEEEEEEEecCCCCCC-eEEEEE-EECC
Confidence 78999999986 4676 55543 356889999999999999999999999998732 2222 389999 9975
No 41
>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134}
Probab=98.79 E-value=7.4e-09 Score=76.29 Aligned_cols=78 Identities=8% Similarity=-0.002 Sum_probs=54.8
Q ss_pred HHHHhhcC-ceEEEeeCCCCCCCC-----CcceeEE-EEeCCEEEEEeEeeeeeCCCCCCEEEEEEEeCCCCCCcceEEE
Q psy5140 42 LKTLFESG-AGSFALSEPGSGSDA-----FAMKTTA-TKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGKVTKGLF 114 (120)
Q Consensus 42 ~~~l~~~G-~~~~~~~e~~~g~~~-----~~~~~~a-~~~~~g~~l~G~k~~v~~~~~a~~~~v~a~~~~~~~~~~~~~~ 114 (120)
++...+.. ..+.++++|...-+. ..+.... .++++||+|||.|.|+||+..||+++|++++....+..+.++|
T Consensus 140 ~~~~~~~DL~~~~a~~dPk~dRs~~~~~q~d~~l~Vve~~~dGiVVnGaK~~~T~a~~Ad~i~V~a~t~~~~~~d~~~~F 219 (517)
T 4g5e_A 140 VNFAKKHDLNCAPQFVDPQMDRSNPDAQQRSPGLRVIEKNDKGIVVSGVKAIGTGVAFADWIHIGVFFRPGIPGDQIIFA 219 (517)
T ss_dssp HHHHHHHTCCEEEECCCCCC-----------CBCEEEEECSSEEEEEEEEEEEESGGGCSEEEECCCCCTTCCGGGCEEE
T ss_pred HHHHHhcCceeeeeeeCCCCCCCCCchhcCCCceEEEEEcCCeEEEeeEehhhcCccccCEEEEEeecCCCCCccceEEE
Confidence 33334444 677888888633221 1122333 4678999999999999999999999999988665555678899
Q ss_pred EEeeCC
Q psy5140 115 SSIPTG 120 (120)
Q Consensus 115 ~~V~~~ 120 (120)
+ ||.|
T Consensus 220 ~-VP~d 224 (517)
T 4g5e_A 220 A-TPVN 224 (517)
T ss_dssp E-EETT
T ss_pred E-EecC
Confidence 9 9975
No 42
>2bdr_A Ureidoglycolate hydrolase; all beta protein, structural genomics, PSI, protein structur initiative, northeast structural genomics consortium; 1.60A {Pseudomonas putida} SCOP: b.82.1.14
Probab=26.73 E-value=1.1e+02 Score=19.20 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=23.8
Q ss_pred eEeeeeeCCCCCCEEEEEEEeCCCCCCcceEEEEEeeC
Q psy5140 82 GSKMWISNADIANIFLVMANVDVSKGKVTKGLFSSIPT 119 (120)
Q Consensus 82 G~k~~v~~~~~a~~~~v~a~~~~~~~~~~~~~~~~V~~ 119 (120)
|+-.|++... ..|++|.|...+.+..+.+.+|+ ++.
T Consensus 79 ~sQafiPl~~-~~~lVvVAp~~~~Pd~~~lrAF~-~~g 114 (175)
T 2bdr_A 79 GSQAFIPLLG-NPFLIVVAPVGDAPVSGLVRAFR-SNG 114 (175)
T ss_dssp BCEEEEESSC-CCEEEEEECSSSSCCGGGCEEEE-ECS
T ss_pred CceEEEECCC-CEEEEEEeCCCCCCCccceEEEE-eCC
Confidence 6666777554 46888888433334567788898 875
No 43
>1xsq_A Ureidoglycolate hydrolase; northeast structural genomics consortium, NESG, structural genomics, protein structure initiative, PSI, ET81, X-RAY; 1.60A {Escherichia coli} SCOP: b.82.1.14 PDB: 1xsr_A 1yqc_A
Probab=22.32 E-value=92 Score=19.31 Aligned_cols=36 Identities=19% Similarity=0.144 Sum_probs=22.8
Q ss_pred eEeeeeeCCCCCCEEEEEEEeCCCCCCcceEEEEEeeC
Q psy5140 82 GSKMWISNADIANIFLVMANVDVSKGKVTKGLFSSIPT 119 (120)
Q Consensus 82 G~k~~v~~~~~a~~~~v~a~~~~~~~~~~~~~~~~V~~ 119 (120)
|+-.|++-.. ..|++|.|..++.+..+.+.+|+ ++.
T Consensus 77 ~sQafiPl~~-~~~lVvVA~~~~~Pd~~~lrAF~-~~g 112 (168)
T 1xsq_A 77 GTQAFIPMKG-EVFVVVVALGDDKPDLSTLRAFI-TNG 112 (168)
T ss_dssp BCEEEEESBC-CCCEEEEEECSSSCEEEEEEEEE-CCS
T ss_pred CceEEEECCC-CEEEEEEeCCCCCCChhheEEEE-ecC
Confidence 5556666443 45777778654434456788888 765
Done!