RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5140
(120 letters)
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion,
oxidoreductase, transit peptide, fatty acid metabolism,
FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}
Length = 404
Score = 111 bits (281), Expect = 9e-31
Identities = 40/63 (63%), Positives = 52/63 (82%), Gaps = 2/63 (3%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGKVT 110
GSF LSE G+GSD+FA+KT A K+G++Y+LNGSKMWIS+A+ A +FLVMANVD + G
Sbjct: 144 GSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGY-- 201
Query: 111 KGL 113
KG+
Sbjct: 202 KGI 204
Score = 34.0 bits (79), Expect = 0.005
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 16 IAKLAKETIAPYVQKMESEEKIDETVLKTLFESGAGSFALSEP--GSGSDAFA 66
+ K A+E IAP V M+ K++++V++ LF+ G + G+G+ +
Sbjct: 40 VKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGASFLS 92
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP:
a.29.3.1 e.6.1.1
Length = 379
Score = 104 bits (262), Expect = 4e-28
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 15/87 (17%)
Query: 27 YVQKMESEEKIDETVLKTLFESGAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMW 86
+++ + + + +FALSEPG+GSDA A+KT A + G+HY+LNG+KMW
Sbjct: 109 FLRPLTEKPAL-------------AAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMW 155
Query: 87 ISNADIANIFLVMANVDVSKGKVTKGL 113
ISN A +V A V+ KG+
Sbjct: 156 ISNGGEAEWVVVFATVNPELR--HKGV 180
Score = 25.5 bits (57), Expect = 5.0
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 16 IAKLAKETIAPYVQKMESEEKIDETVLKTLFESGAGSFALSEP--GSGSDAFA 66
+ AKE I P Q+ + +E++ V++ L E G + + E G G
Sbjct: 16 ARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYGGMGLKMLD 68
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
FDA; 2.10A {Mycobacterium thermoresistibile}
Length = 393
Score = 102 bits (258), Expect = 1e-27
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 15/87 (17%)
Query: 27 YVQKMESEEKIDETVLKTLFESGAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMW 86
+ + S E + S+ALSE +GSDA +M+T A DG+ +ILNGSK W
Sbjct: 123 VLPAVASGEAM-------------ASYALSEREAGSDAASMRTRAVADGDDWILNGSKCW 169
Query: 87 ISNADIANIFLVMANVDVSKGKVTKGL 113
I+N + + VMA D KG G+
Sbjct: 170 ITNGGKSTWYTVMAVTDPDKG--ANGI 194
Score = 26.7 bits (60), Expect = 1.8
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 16 IAKLAKETIAPYVQKMESEEKIDETVLKTLFESGAGSFALSEP--GSGSDAFA 66
I LA++ IAPY +++ + + E L L SG + + E G G+D+ A
Sbjct: 30 IRALAEKEIAPYAAEVDEKARFPEEALAALNSSGFSAIHVPEEYGGQGADSVA 82
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron
transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1
e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A*
3mdd_A* 3mde_A*
Length = 396
Score = 102 bits (257), Expect = 2e-27
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 14/88 (15%)
Query: 27 YVQKMESEEKIDETVLKTLFESGAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMW 86
Y+ +M E + ++ ++EPG+GSD +KT A K G+ YI+NG KMW
Sbjct: 120 YLGRMTEEPLM-------------CAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMW 166
Query: 87 ISNADIANIFLVMANVD-VSKGKVTKGL 113
I+N AN + ++A D K K
Sbjct: 167 ITNGGKANWYFLLARSDPDPKAPANKAF 194
Score = 25.2 bits (56), Expect = 5.8
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 18 KLAKETIAPYVQKMESEEKIDETVLKTLFESGAGSFALSEP--GSGSDAFA 66
K A+E I P + + + +++ +E G + + E G G F
Sbjct: 29 KFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGLGLGTFD 79
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA
dehydrogenase, flavoprotein, isovaleric acidemia; HET:
FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Length = 394
Score = 101 bits (255), Expect = 4e-27
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGKVT 110
G+ A+SEP +GSD +MK A K GNHYILNG+K WI+N A++ +V A D++ +
Sbjct: 131 GALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPAS 190
Query: 111 KGL 113
+G+
Sbjct: 191 RGI 193
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET:
FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*
Length = 397
Score = 101 bits (254), Expect = 5e-27
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGKVT 110
G F ++EP +GSD AM +TA G+H++LNGSK WISNA A++ + A D + G
Sbjct: 124 GGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAAQADVLIYYAYTDKAAGS-- 181
Query: 111 KGL 113
+GL
Sbjct: 182 RGL 184
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid
metabolism, FAD, polymorphism, flavoprotein,
mitochondrion, disease mutation; HET: FAD COS; 1.9A
{Homo sapiens} PDB: 1jqi_A*
Length = 391
Score = 101 bits (254), Expect = 6e-27
Identities = 29/58 (50%), Positives = 40/58 (68%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGK 108
G FALSEPG+GSDA A TTA +G+ ++LNG+K WI+NA A+ +V A+ D +
Sbjct: 122 GCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQN 179
Score = 27.1 bits (61), Expect = 1.4
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 16 IAKLAKETIAPYVQKMESEEKIDETVLKTLFESGAGSFALSEP----GSGSDAFA 66
A++ + P +++ E +K + G A+ P G+G D A
Sbjct: 17 CRDFAEKELFPIAAQVDKEHLFPAAQVKKMGGLGL--LAMDVPEELGGAGLDYLA 69
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA
dehydrogenase, , aldehyde dehydrogenase, oxidoreductase;
HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP:
a.29.3.1 e.6.1.1
Length = 366
Score = 100 bits (252), Expect = 9e-27
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKG 107
+ SE +GSD AM+T DG+ +++G K+W + A A+ +V + G
Sbjct: 107 AAVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQEDGSG 163
Score = 24.8 bits (55), Expect = 8.0
Identities = 6/50 (12%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 19 LAKETIAPYVQKMESEEKIDETVLKTLFESGAGSFALSEP--GSGSDAFA 66
L + + + ++ ++ +L L G ++ G G +
Sbjct: 7 LLTDLVGDRAAEWDTSGELPRDLLVRLGADGLLCAEVAAEHGGLGLGSRE 56
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain
acyl-COA dehydrogenase, flavoprotein, oxidoreductase;
HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP:
a.29.3.1 e.6.1.1
Length = 383
Score = 97.6 bits (244), Expect = 2e-25
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 3/64 (4%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDG-NHYILNGSKMWISNADIANIFLVMANVDVSKGKV 109
G+F L+EP +G+DA +T ATK+ Y LNGSK++I+N A+I++V A D SKG
Sbjct: 124 GAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGN- 182
Query: 110 TKGL 113
G+
Sbjct: 183 -HGI 185
Score = 25.2 bits (56), Expect = 6.7
Identities = 6/34 (17%), Positives = 15/34 (44%)
Query: 16 IAKLAKETIAPYVQKMESEEKIDETVLKTLFESG 49
++ +AP V + + + D+ ++ L G
Sbjct: 16 AHDFGEKKLAPTVTERDHKGIYDKELIDELLSLG 49
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national
project on protein STR and functional analyses; HET:
FAD; 2.50A {Thermus thermophilus}
Length = 372
Score = 97.2 bits (243), Expect = 2e-25
Identities = 21/53 (39%), Positives = 37/53 (69%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVD 103
G+F L+EP +GSDA +++ A + ++LNG K WI++A A++++VMA +
Sbjct: 119 GAFCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHAHLYVVMARTE 171
Score = 27.4 bits (62), Expect = 1.1
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 16 IAKLAKETIAPYVQKMESEEKIDETVLKTLFESGAGSFALSEP--GSGSDAFA 66
+ ++A+E + P + + + + LK L E G E G G D+
Sbjct: 14 VRRVAREVLYPLAPEYDRKAEYPWPQLKALAELGLLGMTTPEEWGGVGLDSVT 66
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening,
optimization, protein crystallization, structural
genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei
1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A
Length = 396
Score = 96.9 bits (242), Expect = 3e-25
Identities = 28/62 (45%), Positives = 38/62 (61%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGKVT 110
G F L+EP GSD +M T A K Y L+GSKMWI+N+ IA++F+V A +D
Sbjct: 135 GCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLDEDGRDEI 194
Query: 111 KG 112
+G
Sbjct: 195 RG 196
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national
project protein structural and functional analyses; HET:
FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1
PDB: 1ws9_A 2cx9_A*
Length = 387
Score = 96.8 bits (242), Expect = 3e-25
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVD--VSKGK 108
G++ L+EPGSGSDA A+KT A K + LNG+K +I+ +A +++VMA D S +
Sbjct: 123 GAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPER 182
Query: 109 VTKGL 113
+G+
Sbjct: 183 KHQGI 187
Score = 26.7 bits (60), Expect = 2.1
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 6/51 (11%)
Query: 20 AKETIAPYVQKMESEEKIDETVLKTLFESGAGSFALSEP----GSGSDAFA 66
K +AP + + +++ L E G F P G+G
Sbjct: 22 LKAEVAPGAAERDRTGAFPWDLVRKLAEFGV--FGALVPEAYGGAGLSTRL 70
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial;
flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC;
1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Length = 393
Score = 96.4 bits (241), Expect = 3e-25
Identities = 29/58 (50%), Positives = 40/58 (68%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGK 108
S+ L+EPGSGSDA ++ T+A K G+HYILNGSK +IS A ++I++VM K
Sbjct: 134 ASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDIYVVMCRTGGPGPK 191
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA
structural genomics, PSI, protein structure initiative;
HET: FAD; 1.80A {Geobacillus kaustophilus}
Length = 385
Score = 96.4 bits (241), Expect = 4e-25
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGKVT 110
+ A++EPG+GSD + TTA KDG++YI+NG K +I+N A++ +V D
Sbjct: 125 TAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFITNGIHADLIVVACKTDPQAKPPH 184
Query: 111 KGL 113
+G+
Sbjct: 185 RGI 187
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid
metabolism, transit peptide, disease mutation, LI
metabolism, coenzyme A dehydrogenase; HET: FAD TH3;
1.45A {Homo sapiens} PDB: 3b96_A*
Length = 607
Score = 96.3 bits (240), Expect = 9e-25
Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 51 GSFALSEPGSGSDAFAMKTTATK--DGNHYILNGSKMWISNADIANIFLVMANVDVSKGK 108
+F L+EP SGSDA +++T+A G +Y LNGSK+WISN +A+IF V A V+
Sbjct: 164 AAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPA 223
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na
project on protein structural and functional analyses;
HET: FAD; 2.30A {Thermus thermophilus}
Length = 577
Score = 95.9 bits (239), Expect = 2e-24
Identities = 39/79 (49%), Positives = 47/79 (59%), Gaps = 15/79 (18%)
Query: 27 YVQKMESEEKIDETVLKTLFESGAGSFALSEPGSGSDAFAMKTTAT--KDGNHYILNGSK 84
Y+ K+ S E I ++ L+EPGSGSDA A KT AT +DG HYILNG K
Sbjct: 133 YLPKLASGEWI-------------AAYCLTEPGSGSDALAAKTRATLSEDGKHYILNGVK 179
Query: 85 MWISNADIANIFLVMANVD 103
WISNA A++F V A VD
Sbjct: 180 QWISNAGFAHLFTVFAKVD 198
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase,
mycobacerium smegmatis, S genomics; HET: FDA; 1.45A
{Mycobacterium smegmatis}
Length = 399
Score = 94.9 bits (237), Expect = 2e-24
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 9/70 (12%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVD------- 103
G F L+EP GS+ M+T A +DG+ +ILNG+KMWI+N ++A++ V A D
Sbjct: 141 GCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMWITNGNLADVATVWAQTDDGIRGFL 200
Query: 104 VSKGKVTKGL 113
V T G
Sbjct: 201 VPTD--TPGF 208
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for
infectious disease, S FAD, FADH, tuberculosis,
oxidoredu; HET: FAD; 2.35A {Mycobacterium
thermoresistibile}
Length = 387
Score = 94.9 bits (237), Expect = 2e-24
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVD 103
G+++LSEP +GSDA A++ AT Y++NGSK WI++ A+ + + A
Sbjct: 131 GAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGGKADFYTLFARTG 183
Score = 27.1 bits (61), Expect = 1.7
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 16 IAKLAKETIAPYVQKMESEEKIDETVLKTLFESGAGSFALSEP--GSGSDAFA 66
++A + + P V + E +E E V + L +G S E G G
Sbjct: 27 TREIADKVLDPIVDRHEKDETYPEGVFEQLGAAGLLSLPQPEEWGGGGQPYEV 79
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-structure,
beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus
anthracis}
Length = 597
Score = 95.1 bits (237), Expect = 2e-24
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 15/79 (18%)
Query: 27 YVQKMESEEKIDETVLKTLFESGAGSFALSEPGSGSDAFAMKTTA--TKDGNHYILNGSK 84
Y+ + + EK+ ++AL+EPGSGSDA KTTA +G HY+LNG K
Sbjct: 138 YLPLLATGEKL-------------AAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGEK 184
Query: 85 MWISNADIANIFLVMANVD 103
WI+N+ A++F+V A +D
Sbjct: 185 QWITNSAFADVFIVYAKID 203
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; HET: FDA; 1.70A
{Mycobacterium smegmatis}
Length = 403
Score = 93.8 bits (234), Expect = 4e-24
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 9/70 (12%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVD------- 103
G F L+EP GSD M+T AT+ G+ +IL G+KMWI+N +A++ +V A D
Sbjct: 146 GCFGLTEPDHGSDPAGMRTRATRSGDDWILTGTKMWITNGSVADVAVVWARTDEGIRGFV 205
Query: 104 VSKGKVTKGL 113
V T G
Sbjct: 206 VPTD--TPGF 213
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin,
peroxisome, glyoxysome, fatty acid metabo lipid
metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A
{Arabidopsis thaliana} PDB: 2ix6_A*
Length = 436
Score = 93.5 bits (233), Expect = 7e-24
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGKVT 110
+AL+EP +GSDA + TTATK + +NG K WI N+ A++ ++ A + + ++
Sbjct: 170 ACWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFA-RNTTTNQIN 228
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase
family, kijanose, kijani FAD, flavoprotein; HET: TYD;
2.05A {Actinomadura kijaniata}
Length = 439
Score = 92.4 bits (230), Expect = 2e-23
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 50 AGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGKV 109
A+ G A+ T ++L+G K +S A + F++ A D + G
Sbjct: 135 VAGDAVVCSGIKDHHTAVTTLRPDGAGGWLLSGRKTLVSMAPVGTHFVINARTDGTDGP- 193
Query: 110 TKGL 113
L
Sbjct: 194 -PRL 196
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD,
STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus
thermophilus}
Length = 385
Score = 90.7 bits (226), Expect = 5e-23
Identities = 25/61 (40%), Positives = 42/61 (68%), Gaps = 3/61 (4%)
Query: 51 GSFALSEPGSGSDAFA-MKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGKV 109
G F L+EP GSD + MKT A ++G+ ++LNG+KMWI+N ++A++ ++ A + G+V
Sbjct: 127 GCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWITNGNLAHLAVIWAKDE--GGEV 184
Query: 110 T 110
Sbjct: 185 L 185
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
oxidoreductase; HET: FAO; 1.70A {Mycobacterium
smegmatis} PDB: 3oib_A*
Length = 403
Score = 89.9 bits (224), Expect = 1e-22
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 24 IAPYVQKMESEEKIDETVLKTLFESGA--GSFALSEPGSGSDAFAMKTTATKDGNHYILN 81
P++ + ID V TL G G+ A++EPG GSD ++T A DG+HY++N
Sbjct: 116 AVPHMIASGDQRLIDTYVRPTL--RGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVIN 173
Query: 82 GSKMWISNADIANIFLVMANVD 103
G+K +I++ A+ + A
Sbjct: 174 GAKTYITSGVRADYVVTAARTG 195
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
oxidoreductase; HET: FDA; 2.50A {Mycobacterium
abscessus}
Length = 403
Score = 89.1 bits (222), Expect = 2e-22
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 25 APYVQKMESEEKIDETVLKTLFESGA--GSFALSEPGSGSDAFAMKTTATKDGNHYILNG 82
P++ S+ I+ V TL +G GS ++EPG+GSD ++T A ++G+ Y++NG
Sbjct: 120 LPHIAANGSDALIERYVRPTL--AGKMIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNG 177
Query: 83 SKMWISNADIANIFLVMA 100
+K +I++ A+
Sbjct: 178 AKTFITSGVRADFVTTAV 195
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA
dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A
{Podospora anserina}
Length = 438
Score = 88.1 bits (219), Expect = 5e-22
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 13/80 (16%)
Query: 51 GSFALSEPGSGSDAF-----AMKTTATKDGNHYILNGSKMWISNADIAN--------IFL 97
S SEPG ++A +TTA +G+ +++NG KMW +N + +
Sbjct: 130 ASLVFSEPGGVANALEKGAPGFQTTARLEGDEWVINGEKMWATNCAGWDFKGCDLACVVC 189
Query: 98 VMANVDVSKGKVTKGLFSSI 117
A + +G+ + I
Sbjct: 190 RDATTPLEEGQDPENKVMII 209
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase,
decarboxylation, flavin protein, oxidoreductase; HET:
FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB:
2r0n_A* 1sir_A* 2r0m_A*
Length = 392
Score = 86.5 bits (215), Expect = 2e-21
Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 51 GSFALSEPGSGSDAFAMKTTA--TKDGNHYILNGSKMWISNADIANIFLVMANVD 103
G F L+EP SGSD +M+T A Y LNG+K WI+N+ +A++F+V A +
Sbjct: 129 GCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE 183
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA
dehydrogenase, long cell EDGE, FAD, inhibitor,
flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium
oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A*
2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*
Length = 439
Score = 86.2 bits (214), Expect = 3e-21
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Query: 51 GSFALSEPGSGSD-----AFAMKTTATKDGNHYILNGSKMWISNA-----DIANIFLVMA 100
S SEP ++ ++TTA K GN ++++G K+W SN+ A++ V+
Sbjct: 129 ASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVC 188
Query: 101 NVDVSKGK 108
V K
Sbjct: 189 RVSDDPSK 196
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas
oxidoreductase; 3.15A {Micromonospora carbonacea}
Length = 395
Score = 76.1 bits (188), Expect = 1e-17
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 7/59 (11%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDG-NHYILNGSKMWISNADIANIFLVMANVDVSKGK 108
AL + + T DG ++L+G K+ +S A IA F V A G
Sbjct: 130 VCGALKDAP------GVVTELHSDGAGGWLLSGRKVLVSMAPIATHFFVHAQRRDDDGS 182
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle,
oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus}
SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
Length = 661
Score = 69.5 bits (170), Expect = 2e-15
Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 21/102 (20%)
Query: 15 IIAKLAKETIAPYVQKMESEEKIDETVLKTLFESGAGSFALSEPGSGSDAFAMKTTAT-- 72
++ + E + + E G++A +E G G+ ++TTAT
Sbjct: 111 LLHQATAEQQERFFMPAWNLEIT-------------GTYAQTEMGHGTHLRGLETTATYD 157
Query: 73 KDGNHYILNG-----SKMWISN-ADIANIFLVMANVDVSKGK 108
+ILN K W +N +V+A +
Sbjct: 158 PKTQEFILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGEC 199
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein,
oxidoreducta; HET: FAD; 2.80A {Homo sapiens}
Length = 428
Score = 66.9 bits (164), Expect = 2e-14
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 52 SFALSEPG-SGSDAFAMKTTATKDGNHYILNGSKMWISNADIAN--IFLVMANVD 103
F ++EP + SDA ++ + +D + Y++NG K W S A I +V+
Sbjct: 151 CFCMTEPDVASSDATNIECSIQRDEDSYVINGKKWWSSGAGNPKCKIAIVLGRTQ 205
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD
cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP:
a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*
Length = 659
Score = 66.9 bits (163), Expect = 2e-14
Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 25 APYVQKMESEEKIDETVLKTLFESGAGSFALSEPGSGSDAFAMKTTATKD--GNHYILNG 82
P ++ +EE+ + + G +A +E G GS+ ++TTAT D + ++++
Sbjct: 107 VPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHT 166
Query: 83 SKMWISN------ADIANIFLVMANVDVSKGK 108
S ++ +V A + +
Sbjct: 167 PTQTASKWWPGGLGKVSTHAVVYARLITNGKD 198
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme
hydroxylase, oxidoreductase; 2.3A {Acinetobacter
baumannii} PDB: 2jbs_A* 2jbt_A*
Length = 422
Score = 56.3 bits (136), Expect = 1e-10
Identities = 13/62 (20%), Positives = 19/62 (30%)
Query: 53 FALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGKVTKG 112
+ + S + A + ILNG W S D A +V N + G
Sbjct: 136 WLKDPDATASSSIAPFGKVEEVEGGIILNGDYGWSSGCDHAEYAIVGFNRFDADGNKIYS 195
Query: 113 LF 114
Sbjct: 196 FG 197
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural
genomics protein structure initiative, midwest center
for structural genomics, MCSG; HET: 1PS; 1.65A
{Rhodococcus SP} PDB: 3aff_A 3afe_A
Length = 394
Score = 49.3 bits (118), Expect = 3e-08
Identities = 12/62 (19%), Positives = 20/62 (32%)
Query: 53 FALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGKVTKG 112
+ S ++A Y +NG+ W S D A+ ++ V V
Sbjct: 108 WGNDTDVRISSSYAPMGAGQVVDGGYTVNGAWAWSSGCDHASWAVLGGPVIKDGRPVDFV 167
Query: 113 LF 114
F
Sbjct: 168 SF 169
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix
bundle, oxidoreductase; 2.50A {Burkholderia cepacia}
Length = 515
Score = 48.3 bits (114), Expect = 6e-08
Identities = 6/63 (9%), Positives = 13/63 (20%), Gaps = 6/63 (9%)
Query: 52 SFALSEP------GSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVS 105
+P + K + I+NG K + + +
Sbjct: 150 PLNFVDPQTDRSSDAAQARSPNLRIVEKTDDGIIVNGVKAVGTGIAFGDYMHIGCLYRPG 209
Query: 106 KGK 108
Sbjct: 210 IPG 212
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein,
oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB:
3u33_A*
Length = 541
Score = 47.4 bits (113), Expect = 1e-07
Identities = 19/104 (18%), Positives = 31/104 (29%), Gaps = 12/104 (11%)
Query: 2 DMAYKGLGRDRLNIIAKLA-KETIAPYVQKMESEEKIDETVLKTLFESGAGSFALSEPGS 60
A L + Y + + K G ++E
Sbjct: 139 FAATPLLLQMLPAPFQDWTTPLLSDRYDSHLLPGGQ------KRGLLIG---MGMTEKQG 189
Query: 61 GSDAFAMKTTATKDGN-HYILNGSKMWISNADIANIFLVMANVD 103
GSD + T A + + Y L G K + S ++ LV+A
Sbjct: 190 GSDVMSNTTRAERLEDGSYRLVGHKWFFSVPQ-SDAHLVLAQTA 232
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes,
beta-strands, lyase; HET: FAD; 1.60A {Clostridium
aminobutyricum} SCOP: a.29.3.1 e.6.1.1
Length = 490
Score = 46.7 bits (110), Expect = 2e-07
Identities = 8/76 (10%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 52 SFALSEPGSG--------SDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVD 103
A+++P D K + ++ G+K + + ++ ++M +
Sbjct: 146 DGAMTDPKGDRGLAPSAQKDPDLFLRIVEKREDGIVVRGAKAHQTGSINSHEHIIMPTIA 205
Query: 104 VSKGKVTKGLFSSIPT 119
+++ + + P+
Sbjct: 206 MTEADKDYAVSFACPS 221
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8
center, oxygnase component, 4- hydroxyphenylacetate
3-monooxygenase; 1.60A {Thermus thermophilus} PDB:
2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*
Length = 481
Score = 42.9 bits (100), Expect = 6e-06
Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 9/77 (11%)
Query: 52 SFALSEPGSG--------SDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVD 103
+ AL+ P D + + ++ G++M + +A+ L+ ++
Sbjct: 141 THALTNPQVNRARPPSGQPDPYIPVGVVKQTEKGIVVRGARMTATFP-LADEVLIFPSIL 199
Query: 104 VSKGKVTKGLFSSIPTG 120
+ G L ++PT
Sbjct: 200 LQAGSEKYALAFALPTS 216
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics,
PSI-2, protein structure initiative, midwest CENT
structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus
SP}
Length = 414
Score = 41.3 bits (97), Expect = 2e-05
Identities = 11/60 (18%), Positives = 19/60 (31%)
Query: 53 FALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGKVTKG 112
+ + +A AT Y+L G + S D + A V +G +
Sbjct: 121 WGEDNDTWMASPYAPMGVATPVDGGYVLKGRWSFSSGTDHCQWAFLGAMVGDGEGGIATP 180
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.001
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 23/50 (46%)
Query: 21 KETIAPYVQKMESEEKIDETVLKTLFESGAGSFALSEPGSGSDAFAMKTT 70
K+ + +K+++ LK L S + A A+K T
Sbjct: 19 KQAL----KKLQAS-------LK-----------LYADDS-APALAIKAT 45
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.130 0.358
Gapped
Lambda K H
0.267 0.0794 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,706,083
Number of extensions: 90467
Number of successful extensions: 179
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 60
Length of query: 120
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 38
Effective length of database: 4,412,271
Effective search space: 167666298
Effective search space used: 167666298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.3 bits)