RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5140
(120 letters)
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains
{Human (Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 71.7 bits (175), Expect = 4e-17
Identities = 29/62 (46%), Positives = 42/62 (67%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGKVT 110
G+ A+SEP +GSD +MK A K GNHYILNG+K WI+N A++ +V A D++ +
Sbjct: 126 GALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPAS 185
Query: 111 KG 112
+G
Sbjct: 186 RG 187
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM
domains {Pig (Sus scrofa) [TaxId: 9823]}
Length = 231
Score = 66.5 bits (161), Expect = 4e-15
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIF 96
++ ++EPG+GSD +KT A K G+ YI+NG KMWI+N AN +
Sbjct: 121 CAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWY 166
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 231
Score = 65.7 bits (159), Expect = 9e-15
Identities = 32/84 (38%), Positives = 47/84 (55%)
Query: 25 APYVQKMESEEKIDETVLKTLFESGAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSK 84
A + +EE+ + S+ L+EPGSGSDA ++ T+A K G+HYILNGSK
Sbjct: 99 AWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSK 158
Query: 85 MWISNADIANIFLVMANVDVSKGK 108
+IS A ++I++VM K
Sbjct: 159 AFISGAGESDIYVVMCRTGGPGPK 182
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM
domains {Thermus thermophilus [TaxId: 274]}
Length = 227
Score = 50.0 bits (118), Expect = 4e-09
Identities = 34/89 (38%), Positives = 48/89 (53%)
Query: 26 PYVQKMESEEKIDETVLKTLFESGAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKM 85
V +EE+ + + + +FALSEPG+GSDA A+KT A + G+HY+LNG+KM
Sbjct: 95 TPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKM 154
Query: 86 WISNADIANIFLVMANVDVSKGKVTKGLF 114
WISN A +V A V+
Sbjct: 155 WISNGGEAEWVVVFATVNPELRHKGVVAL 183
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 233
Score = 48.9 bits (115), Expect = 1e-08
Identities = 26/61 (42%), Positives = 38/61 (62%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGKVT 110
G++ L+EPGSGSDA A+KT A K + LNG+K +I+ +A +++VMA D
Sbjct: 122 GAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPER 181
Query: 111 K 111
K
Sbjct: 182 K 182
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM
domains {Clostridium aminobutyricum [TaxId: 33953]}
Length = 275
Score = 47.3 bits (112), Expect = 4e-08
Identities = 7/78 (8%), Positives = 27/78 (34%), Gaps = 8/78 (10%)
Query: 51 GSFALSEPGSGSD--------AFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANV 102
A+++P K + ++ G+K + + ++ ++M +
Sbjct: 145 VDGAMTDPKGDRGLAPSAQKDPDLFLRIVEKREDGIVVRGAKAHQTGSINSHEHIIMPTI 204
Query: 103 DVSKGKVTKGLFSSIPTG 120
+++ + + P+
Sbjct: 205 AMTEADKDYAVSFACPSD 222
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 231
Score = 44.6 bits (104), Expect = 4e-07
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 26 PYVQKMESEEKIDETVLKTLFESGAGSFALSEPGSGSDAFAMKTTATKDGNHYILNGSKM 85
+ K S ++ + + G FALSEPG+GSDA A TTA ++G+ ++LNG+K
Sbjct: 98 GPILKFGSSQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKA 157
Query: 86 WISNADIANIFLVMANVD 103
WI+N+ A+ +V A+ D
Sbjct: 158 WITNSWEASATVVFASTD 175
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains
{Megasphaera elsdenii [TaxId: 907]}
Length = 232
Score = 43.1 bits (100), Expect = 1e-06
Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 51 GSFALSEPGSGSDAFAMKTTATKDGN-HYILNGSKMWISNADIANIFLVMANVDVSKGKV 109
G+F L+EP +G+DA +T ATK+ + Y LNGSK++I+N A+I++V A D SKG
Sbjct: 124 GAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGNH 183
Query: 110 TKGLF 114
F
Sbjct: 184 GITAF 188
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and
2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 271
Score = 33.9 bits (77), Expect = 0.002
Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 25 APYVQKMESEEKIDETVLKTLFESGAGSFALSEPGSGSDAFAMKTTATKD--GNHYILN- 81
P ++ +EE+ + + G +A +E G GS+ ++TTAT D + ++++
Sbjct: 106 VPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHT 165
Query: 82 ----GSKMWISNADIANIFLVMANVDVSKGK 108
SK W + V+ ++ GK
Sbjct: 166 PTQTASKWWPGGLGKVSTHAVVYARLITNGK 196
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human
(Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 31.2 bits (69), Expect = 0.019
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 51 GSFALSEPGS--GSDAFAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVD 103
G F L+EP S + + Y LNG+K WI+N+ +A++F+V A +
Sbjct: 129 GCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE 183
>g1gk9.1 d.153.1.2 (A:,B:) Penicillin acylase {Escherichia coli
[TaxId: 562]}
Length = 765
Score = 27.3 bits (59), Expect = 0.49
Identities = 5/40 (12%), Positives = 14/40 (35%)
Query: 53 FALSEPGSGSDAFAMKTTATKDGNHYILNGSKMWISNADI 92
F + S+ + + + +D ++NG +
Sbjct: 200 FNQQNSQTASNMWVIGKSKAQDAKAIMVNGPQFGWYAPAY 239
>d2z1aa2 d.159.1.2 (A:28-329) 5'-nucleotidase (syn. UDP-sugar
hydrolase), N-terminal domain {Thermus thermophilus
[TaxId: 274]}
Length = 302
Score = 25.7 bits (55), Expect = 1.6
Identities = 16/50 (32%), Positives = 20/50 (40%)
Query: 65 FAMKTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGKVTKGLF 114
++ A GNH G A +V ANVD S+ KGLF
Sbjct: 77 HRLRYRAMALGNHEFDLGPGPLADFLKGARFKVVSANVDASREPRLKGLF 126
>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting
protein 36, VPS36 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 130
Score = 24.5 bits (53), Expect = 2.9
Identities = 8/51 (15%), Positives = 20/51 (39%)
Query: 68 KTTATKDGNHYILNGSKMWISNADIANIFLVMANVDVSKGKVTKGLFSSIP 118
K + G ++ + ++I +A L + D++ + G + P
Sbjct: 38 KILQRQRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYVNYSSGFLTRSP 88
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.130 0.358
Gapped
Lambda K H
0.267 0.0417 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 394,920
Number of extensions: 15378
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 23
Length of query: 120
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,391,576
Effective search space: 64012496
Effective search space used: 64012496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)