BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5142
(410 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P40796|LA_DROME La protein homolog OS=Drosophila melanogaster GN=La PE=1 SV=2
Length = 390
Score = 181 bits (460), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 130/383 (33%), Positives = 198/383 (51%), Gaps = 48/383 (12%)
Query: 20 SKLENQIIEQIEYYFSDINLARDKFLQGEI-KKDDGWVELTTMLKFARLAKMTTEAKVIV 78
+K E II Q+EYYF D NL RDKFL+ +I K +DGWV L+ ++ F RLA ++T+ IV
Sbjct: 48 TKQERAIIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSVLVTFKRLASLSTDLSEIV 107
Query: 79 DALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDATLDDIKD 138
AL KS L+E++ED +RR+PE+ +P + + K++ ++ Y K P+D+ + ++ D
Sbjct: 108 AALNKSEEGLVEISEDKLSLRRHPERPIPEHNEERRKEIQERTAYAKGFPLDSQISELLD 167
Query: 139 FFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFNE 198
F + K+ N+ MR + DK KFKGSIF+TF+ K+ A+ FL + E
Sbjct: 168 F----AANYDKVVNLTMRKHYDKPTKSYKFKGSIFLTFETKDQAKAFLEQ---------E 214
Query: 199 NCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDG 258
+K E LL KWQ +Y +EK++E K +K K E
Sbjct: 215 KIVYK--------------------ERELLRKWQVDYLKEKQEEYAQKNEKRKNKKEAKP 254
Query: 259 EGNTEGSKQVVLELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTA 318
E ELP A++ E SRE+IRE EK++ D E+ +IEF GE
Sbjct: 255 EP--------AFELPKNAIVVFEGAPETSSREEIREAFEKIK--DFEVAYIEFAKGETKG 304
Query: 319 FVRYKKENNAEAVLKALGSKEIVIKD-VKVSIEVVTGEEEQTVLDRMKIDIFKRRQKLMN 377
VR + + AE + + ++ KD V +S+ T EEE+ +D+ I+ K+R+
Sbjct: 305 SVRLTEADAAEKYIAKVEEGKLKFKDEVSLSLRKATEEEEKEFIDKA-IEFMKKRRDFTR 363
Query: 378 EKKSGRKFGKKGPRGTKRSRGGN 400
K G++F +K G GG
Sbjct: 364 NK--GKRFNRKRHGGNDHKHGGG 384
>sp|P05455|LA_HUMAN Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2
Length = 408
Score = 177 bits (450), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 142/402 (35%), Positives = 223/402 (55%), Gaps = 69/402 (17%)
Query: 13 SGAEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTT 72
+G +++ LE +I QIEYYF D NL RDKFL+ +IK D+GWV L M+KF RL ++TT
Sbjct: 4 NGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTT 63
Query: 73 EAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDAT 132
+ VIV+AL KS ++L+E++ED TKIRR+P K LP ++ D+ +S+Y+K P DAT
Sbjct: 64 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDAT 123
Query: 133 LDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDK 192
LDDIK++ + + ++ NI MR K FKGSIFV FD+ E+A+KF+ E +
Sbjct: 124 LDDIKEWLE----DKGQVLNIQMRR-----TLHKAFKGSIFVVFDSIESAKKFV-ETPGQ 173
Query: 193 NLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEY----HEEKKQ-----EV 243
K E LLI ++ +Y +EE+KQ ++
Sbjct: 174 KYK----------------------------ETDLLILFKDDYFAKKNEERKQNKVEAKL 205
Query: 244 RSKRDK-SKKSTEGDGEGNTEGSKQVVLELPTGALLKIS-DIKEPVSREDIREVLEKVQT 301
R+K+++ +K+ E D E + LE G LLK S D+ + RED+ + +
Sbjct: 206 RAKQEQEAKQKLEEDAEMKS-------LEEKIGCLLKFSGDLDDQTCREDLHILF----S 254
Query: 302 DDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKA--LGSKEIVIKDVKVSIEVVTGEEEQT 359
+ EI +I+F G + + KE EA+ KA + + +++ +V+ EV+ GE E+
Sbjct: 255 NHGEIKWIDFVRGAKEGIILF-KEKAKEALGKAKDANNGNLQLRNKEVTWEVLEGEVEKE 313
Query: 360 VLDRMKIDIFKRRQKLMNEKKS-GRKFGKKGPRGTKRSRGGN 400
L + I + +Q+ +N+ KS GR+F KG +G K ++ G+
Sbjct: 314 ALKK----IIEDQQESLNKWKSKGRRFKGKG-KGNKAAQPGS 350
>sp|P32067|LA_MOUSE Lupus La protein homolog OS=Mus musculus GN=Ssb PE=2 SV=1
Length = 415
Score = 176 bits (447), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 138/387 (35%), Positives = 209/387 (54%), Gaps = 60/387 (15%)
Query: 13 SGAEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTT 72
+G +++ LE +I QIEYYF D NL RDKFL+ +IK D+GWV L TM+KF RL ++TT
Sbjct: 4 NGDNEKMTALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLTT 63
Query: 73 EAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDAT 132
+ VIV AL KS +KL+EV+ D TKIRR+P + LP ++ D+ +S+Y+K P DAT
Sbjct: 64 DFNVIVQALSKSKAKLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTDAT 123
Query: 133 LDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDK 192
LDDIK++ + +I NI MR K FKGSIF FD+ ++A+KF+ K
Sbjct: 124 LDDIKEWL----DDKGQILNIQMRR-----TLHKTFKGSIFAVFDSIQSAKKFVEIPGQK 174
Query: 193 NLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEY----HEEKKQEVRSKRD 248
KD N LLI ++++Y +EE+KQ +
Sbjct: 175 -------------------YKDTN----------LLILFKEDYFAKKNEERKQSKVEAKL 205
Query: 249 KSKKSTEGDGE-GNTEGSKQVVLELPTGALLKIS-DIKEPVSREDIREVLEKVQTDDQEI 306
K+K+ EG + G+TE LE G LLK S D+ + RED+ + ++ EI
Sbjct: 206 KAKQEHEGRHKPGSTE---TRALEGKMGCLLKFSGDLDDQTCREDLHFLF----SNHGEI 258
Query: 307 VFIEFNVGEPTAFVRYKKENNAEAVLKALGSK--EIVIKDVKVSIEVVTGEEEQTVLDRM 364
+++F G + + KE EA+ KA + +++++ KV+ +V+ G E+ L ++
Sbjct: 259 KWVDFARGAKEGIILF-KEKAKEALEKARNANNGNLLLRNKKVTWKVLEGHAEKEALKKI 317
Query: 365 KIDIFKRRQKLMNEKKSGRKFGKKGPR 391
D +Q+ +N+ KS K G G R
Sbjct: 318 TDD----QQESLNKWKS--KGGHAGGR 338
>sp|P10881|LA_BOVIN Lupus La protein homolog OS=Bos taurus GN=SSB PE=2 SV=2
Length = 404
Score = 174 bits (442), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 135/396 (34%), Positives = 218/396 (55%), Gaps = 57/396 (14%)
Query: 13 SGAEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTT 72
+G +++ LE +I QIEYYF D NL RDKFL+ +IK D+GWV L M+KF RL ++TT
Sbjct: 4 NGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTT 63
Query: 73 EAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDAT 132
+ VIV+AL KS ++L+E++ED TKIRR+P K LP ++ D+ +S+Y+K P DA
Sbjct: 64 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDAA 123
Query: 133 LDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDK 192
LDDIK++ + + ++ NI MR K FKGSIF FD+ E+A+KF+ K
Sbjct: 124 LDDIKEWLE----DKGQVLNIQMRR-----TLHKAFKGSIFAVFDSIESAKKFVETPGQK 174
Query: 193 NLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEY----HEEKKQEVRSKRD 248
+K+ + LLI ++++Y +EE+KQ +
Sbjct: 175 ---------YKDTD--------------------LLILFKEDYFTKKNEERKQNKMEAKL 205
Query: 249 KSKKSTEGDGEGNTEGSKQVVLELPTGALLKIS-DIKEPVSREDIREVLEKVQTDDQEIV 307
++K+ E + + E ++ LE G LLK S D+ + RED+ + ++ EI
Sbjct: 206 RAKQEQE-EKQKLAENAEMKSLEEKIGCLLKFSGDLDDQTCREDLHTLF----SNHGEIK 260
Query: 308 FIEFNVGEPTAFVRYKKENNAEAVLKA--LGSKEIVIKDVKVSIEVVTGEEEQTVLDRMK 365
+I F G + + KE EA+ KA + + +++ +V+ EV+ G+ E+ L +
Sbjct: 261 WIHFVRGAKEGIILF-KEKAKEALDKAKEANNGNLQLRNKEVTWEVLEGDVEKEALKK-- 317
Query: 366 IDIFKRRQKLMNEKKS-GRKFGKKGPRGTKRSRGGN 400
I + +Q+ +N+ KS GR+F KG +G K ++ G+
Sbjct: 318 --IIEDQQESLNKWKSKGRRFKGKG-KGNKAAQAGS 350
>sp|P38656|LA_RAT Lupus La protein homolog OS=Rattus norvegicus GN=Ssb PE=2 SV=1
Length = 415
Score = 174 bits (441), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 134/395 (33%), Positives = 210/395 (53%), Gaps = 62/395 (15%)
Query: 13 SGAEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTT 72
+G +++ LE +I QIEYYF D NL RDKFL+ +IK D+GWV L TM+KF RL ++TT
Sbjct: 4 NGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLTT 63
Query: 73 EAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDAT 132
+ VIV AL KS + L+EV+ D TKIRR+P + LP ++ D+ +S+Y+K P DAT
Sbjct: 64 DFNVIVQALSKSKANLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTDAT 123
Query: 133 LDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDK 192
LDDIK++ + +I NI MR K FKGSIF FD+ ++A+KF++ K
Sbjct: 124 LDDIKEWL----DDKGQILNIQMRR-----TLHKTFKGSIFAVFDSIQSAKKFVDTPGQK 174
Query: 193 NLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEY----HEEKKQEVRSKRD 248
KD N LLI ++++Y +EE+KQ +
Sbjct: 175 -------------------YKDTN----------LLILFKEDYFAKKNEERKQSKVEAKL 205
Query: 249 KSKKSTEGDGE-GNTEGSKQVVLELPTGALLKIS-DIKEPVSREDIREVLEKVQTDDQEI 306
K+K+ EG + G+TE LE G LLK S D+ + RED + ++ EI
Sbjct: 206 KAKQEHEGRHKPGSTETR---ALEGKMGCLLKFSGDLDDQTCREDFHFLF----SNHGEI 258
Query: 307 VFIEFNVGEPTAFVRYK-KENNAEAVLKALGSKEIVIKDVKVSIEVVTGEEEQTVLDRMK 365
+I+F G + +K K +A ++ + +++++ KV+ +V+ G E+ + ++
Sbjct: 259 KWIDFVRGAKEGIILFKEKAKDALEKARSANNGNLLLRNKKVTWKVLEGHAEKDAMKKIT 318
Query: 366 IDIFKRRQKLMNEKKSGRKFGKKGPRGTKRSRGGN 400
D +Q+ +N+ KS KG +R +G +
Sbjct: 319 DD----QQESLNKWKS------KGGHAARRFKGSH 343
>sp|P28048|LAA_XENLA Lupus La protein homolog A OS=Xenopus laevis GN=ssb-a PE=2 SV=1
Length = 428
Score = 174 bits (441), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 127/367 (34%), Positives = 202/367 (55%), Gaps = 54/367 (14%)
Query: 23 ENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDALK 82
+ +I EQIEYYF D NL RDKFL+ +I DDGWV L TM+KF RL+K+TT+ I+ ALK
Sbjct: 14 DTKICEQIEYYFGDHNLPRDKFLKQQILLDDGWVPLETMIKFNRLSKLTTDFNTILQALK 73
Query: 83 KSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDATLDDIKDFFKK 142
KS ++L+E+NE+ KIRR+P K LP + ++ L +S+Y+K P A LDD+K++ K
Sbjct: 74 KSKTELLEINEEKCKIRRSPAKPLPELNDEYKNSLKHKSVYIKGFPTSAILDDVKEWLKD 133
Query: 143 NTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFNENCEH 202
I NI MR Q++FKGSIF+ F+ ++A+KFL +++NLK+ +N
Sbjct: 134 KGP----IENIQMRR-----TLQREFKGSIFIIFNTDDDAKKFL---ENRNLKYKDN--- 178
Query: 203 KNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSK---KSTEGDGE 259
+ + ++EYH +K +E + + + K K + + +
Sbjct: 179 -----------------------DMTVLSREEYHAKKNEERKLNKSEEKAKSKQVKKEAQ 215
Query: 260 GNTEGSKQVVLELPTGALLKIS-DIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTA 318
E +++ ++E G+LLK S D+ SRED+ + QT +I +I+F+ G
Sbjct: 216 KQAEDAERKLVEERVGSLLKFSGDLDNMTSREDLHALF---QTHG-DIEWIDFSRGAKEG 271
Query: 319 FVRYKKENNAEAV--LKALGSKEIVIKDVKVSIEVVTGEEEQTVLDRMKIDIFKRRQKLM 376
V +K N EA+ KA S + +K V E++ G+ E+ L + I + +Q+
Sbjct: 272 IVLFKM-NAKEALDKAKAANSDNLKLKGKDVKWELIEGDTEKEALKK----ILEGKQESF 326
Query: 377 NEKKSGR 383
N++K GR
Sbjct: 327 NKRK-GR 332
>sp|Q26457|LA_AEDAL La protein homolog OS=Aedes albopictus PE=1 SV=1
Length = 383
Score = 172 bits (435), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 134/392 (34%), Positives = 205/392 (52%), Gaps = 55/392 (14%)
Query: 19 VSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIV 78
VSKLE I Q+EYYF D NLARDKFLQ +I KD+GWV + +L F RL ++ + KVIV
Sbjct: 40 VSKLEASTIRQLEYYFGDANLARDKFLQEQISKDEGWVPVDVLLTFKRLKSLSEDKKVIV 99
Query: 79 DALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVK-YIPVDAT-LDDI 136
DA++KS LIEV+ED K+RR+PE+ LP + + K++ +++YVK + P + T + ++
Sbjct: 100 DAIEKSDEGLIEVSEDREKLRRHPERPLPEQNEETRKEIYGRTVYVKGFAPEEGTQMSEL 159
Query: 137 KDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196
+FF+ KITNI+MR Y DK + FKGS+FVTF K++ +FL
Sbjct: 160 LEFFEPFE----KITNIVMRKYHDKATKKYLFKGSVFVTFATKDHCAEFLK--------- 206
Query: 197 NENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEG 256
E +K E L+ K Q +Y EEKK E R K K ++
Sbjct: 207 KEKLGYKGKE--------------------LIRKMQDDYFEEKKAERRKKDKKKEEDRFN 246
Query: 257 DGEGNTEGSKQVVLELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEP 316
+ LP GA + +S + SRE I+E + K+ + E+ FI++ +
Sbjct: 247 ------------IDHLPKGASVHLSGFNKDTSRETIKETILKLD-ESLEVAFIDYAKTDT 293
Query: 317 TAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVTGEEEQTVLDRMKIDIFKRRQKLM 376
VR+ ++ + ++ L +I I + +++ ++ G+EE+ L ++ D RRQ
Sbjct: 294 EGTVRFAADDAGKKFMEKLTDSKIQIDEEEITARLLEGDEEKEFLRKVVKDQQARRQ-AS 352
Query: 377 NEKKSGRKFGKKGPRGTKRSRGGNFESNKKAK 408
N + GR P G + SR E +KAK
Sbjct: 353 NARNKGRT-----PEGRQASRPPQ-EWRRKAK 378
>sp|P28049|LAB_XENLA Lupus La protein homolog B OS=Xenopus laevis GN=ssb-b PE=2 SV=1
Length = 427
Score = 169 bits (429), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 128/369 (34%), Positives = 204/369 (55%), Gaps = 56/369 (15%)
Query: 22 LENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDAL 81
L+ +I EQIEYYF D NL RDKFL+ ++ D+GWV L TM+KF RL+K+TT+ +I+ AL
Sbjct: 12 LDTKICEQIEYYFGDHNLPRDKFLKQQVLLDNGWVPLETMIKFNRLSKLTTDFNIILQAL 71
Query: 82 KKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDATLDDIKDFFK 141
KKS ++L+E+NE+ KIRR+P K LP + D+ +S+Y+K P LD+IK++
Sbjct: 72 KKSKTELLEINEEKCKIRRSPAKPLPELNEDYKNSFKHRSVYIKGFPTITNLDEIKEWL- 130
Query: 142 KNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFNENCE 201
++ I NI MR Q++FKGS+F+ F+ ++ A+KFL +DKNLK+ +N
Sbjct: 131 ---NDKGPIENIQMRR-----TLQREFKGSVFLVFNTEDGAKKFL---EDKNLKYKDN-- 177
Query: 202 HKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEY----HEEKKQEVRSKRDKSKKSTEGD 257
++I ++EY +EE+K ++ KSK+ E +
Sbjct: 178 ------------------------DMIILSREEYFAKKNEERKLNKSEEKAKSKQEKE-E 212
Query: 258 GEGNTEGSKQVVLELPTGALLKIS-DIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEP 316
+ E +++ ++E G LLK S D+ SRED+ + QT EI +I+F+ G
Sbjct: 213 AQKQAEDAERKLMEERVGCLLKFSGDLDNMTSREDLHALF---QTHG-EIEWIDFSRGAK 268
Query: 317 TAFVRYKKENNAEAV--LKALGSKEIVIKDVKVSIEVVTGEEEQTVLDRMKIDIFKRRQK 374
V +K N EA+ KA + + +K V E++ G+ E+ L + I + +Q+
Sbjct: 269 EGIVLFKM-NAKEALDKAKAANNDNLKLKGKNVKWELIEGDAEKEALKK----IMEGKQE 323
Query: 375 LMNEKKSGR 383
N++K GR
Sbjct: 324 SFNKRK-GR 331
>sp|P87058|LAH1_SCHPO La protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=sla1 PE=1 SV=1
Length = 298
Score = 98.6 bits (244), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 103/179 (57%), Gaps = 17/179 (9%)
Query: 23 ENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDALK 82
E ++++Q+E+YFSD NL DKFL +K+DGWV + T+ F R+ + + IV+AL+
Sbjct: 64 EAEVLKQVEFYFSDTNLPHDKFLWTTSQKNDGWVPIQTIANFKRMRRFQP-LEAIVNALR 122
Query: 83 KSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYI--PVDATLDDIKDFF 140
KS +L+EV+E G K+RR +P +D K ++ +S+Y K D T ++ FF
Sbjct: 123 KSP-ELLEVDEAGEKVRRM----IPLVRVD-NKSVMERSVYCKGFGDEKDDTQIALEKFF 176
Query: 141 KKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFNEN 199
++N I+ + MR D KKFKGS+FV F + A KFL + K LK+ E+
Sbjct: 177 EENAG---PISAVRMRRDDD-----KKFKGSVFVEFKEPDVANKFLEKVKTAPLKWGED 227
>sp|Q7ZWE3|LARP7_DANRE La-related protein 7 OS=Danio rerio GN=larp7 PE=2 SV=1
Length = 555
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 98/170 (57%), Gaps = 19/170 (11%)
Query: 17 AEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKD-DGWVELTTMLKFARLAKMTTEAK 75
+ V +L + + +Q+E++F D+NL +D+F++ I++ DG++++ + F R+ +T + K
Sbjct: 37 SRVKQLLSDVKKQVEFWFGDVNLHKDRFMKSIIEQSRDGYIDIAVLTTFNRMKNLTADVK 96
Query: 76 VIVDALKKSTSKLIEVNEDGTKIRRN-PEKELPTFDIDFVKDLIAQSLYVKYIPVDATLD 134
+I ALK ST ++EVN++GT+IRR P E P KD+ ++++YV+ +P T
Sbjct: 97 LIARALKNST--IVEVNDEGTRIRRKEPLGETP-------KDVDSRTVYVELLPKTVTHI 147
Query: 135 DIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEK 184
++ F K + I + Y+ + + KG FV F+ +E A+K
Sbjct: 148 WLERVFSKCGH----VVYISIPRYK----STRHSKGFAFVEFETQEQAQK 189
>sp|Q05CL8|LARP7_MOUSE La-related protein 7 OS=Mus musculus GN=Larp7 PE=1 SV=2
Length = 570
Score = 82.0 bits (201), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 98/167 (58%), Gaps = 22/167 (13%)
Query: 26 IIEQIEYYFSDINLARDKFLQGEIKKD-DGWVELTTMLKFARLAKMTTEAKVIVDALKKS 84
I +Q++++F D NL +DKFL+ +I+K DG+V+++ ++ F ++ K+TT+ K+I ALK
Sbjct: 32 IAKQVDFWFGDANLHKDKFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALK-- 89
Query: 85 TSKLIEVNEDGTKIRR-NPEKELPTFDIDFVKDLIAQSLYVKYIPVDATLDDIKDFFKKN 143
+S ++E++ +GT+IRR P E P KD +++YV+ +P + T I+ F K
Sbjct: 90 SSSVVELDLEGTRIRRKKPLGERP-------KDEEERTVYVELLPKNVTHSWIERVFGKC 142
Query: 144 TSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEK---FLN 187
+ + I + +Y+ + KG FV F+ KE A K FLN
Sbjct: 143 GN----VVYISIPHYK----STGDPKGFAFVEFETKEQAAKAIEFLN 181
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 24/141 (17%)
Query: 255 EGDGEGNTEGSKQ-------VVLELP---TGALLKISDIKEPVSREDIREVLEKVQTDDQ 304
E D + T GS Q V + P TG ++KI + R+ ++++L +
Sbjct: 412 ETDCKAPTAGSGQECSTQEKVSAQGPQFVTGVIVKIVSGEPLPGRKQVKDILATIS---- 467
Query: 305 EIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVTGEEEQTVLDRM 364
E+V+I+ G+ R+K +A+AV+ A + + K ++EV++G+ EQ ++
Sbjct: 468 EVVYIDLLEGDTECHARFKTPEDAQAVMNA---QTEIRKKHSWNLEVLSGDHEQRYWQKI 524
Query: 365 KIDIFKRRQKLMN---EKKSG 382
+D RQ +N EKK G
Sbjct: 525 LVD----RQAKLNQPREKKRG 541
>sp|Q5XI01|LARP7_RAT La-related protein 7 OS=Rattus norvegicus GN=Larp7 PE=1 SV=2
Length = 571
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 98/167 (58%), Gaps = 22/167 (13%)
Query: 26 IIEQIEYYFSDINLARDKFLQGEIKKD-DGWVELTTMLKFARLAKMTTEAKVIVDALKKS 84
I +Q++++F D NL +D+FL+ +I+K DG+V+++ ++ F ++ K+TT+ K+I ALK
Sbjct: 33 IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALK-- 90
Query: 85 TSKLIEVNEDGTKIRR-NPEKELPTFDIDFVKDLIAQSLYVKYIPVDATLDDIKDFFKKN 143
+S ++E++ +GT+IRR P E P KD +++YV+ +P + T I+ F K
Sbjct: 91 SSSVVELDLEGTRIRRKKPLGERP-------KDEEERTVYVELLPKNVTHSWIERVFGKC 143
Query: 144 TSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEK---FLN 187
+ + I + +Y+ + KG FV F+ KE A K FLN
Sbjct: 144 GN----VVYISIPHYK----STGDPKGFAFVEFETKEQAAKAIEFLN 182
Score = 35.4 bits (80), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 14/112 (12%)
Query: 274 TGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLK 333
TG ++KI R+ ++++L + E+V+I+ G+ R+K +A+AV+
Sbjct: 442 TGVIVKILSEDPLPGRKQVKDILATIS----EVVYIDLLEGDTECHARFKTPEDAQAVMN 497
Query: 334 ALGSKEIVIKDVKVSIEVVTGEEEQTVLDRMKIDIFKRRQKLMN---EKKSG 382
A + + K ++E+++G+ EQ ++ +D RQ +N EKK G
Sbjct: 498 A---QTEIKKKHSWNLEILSGDHEQRYWQKILVD----RQAKLNQPREKKRG 542
>sp|Q28G87|LARP7_XENTR La-related protein 7 OS=Xenopus tropicalis GN=larp7 PE=2 SV=1
Length = 593
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 116/216 (53%), Gaps = 30/216 (13%)
Query: 17 AEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKD-DGWVELTTMLKFARLAKMTTEAK 75
+ V +L I +Q++++F D+NL +D+FL+ +I+K DG+++++ + F ++ K+TT++K
Sbjct: 31 SRVKQLLADIAKQVDFWFGDVNLHKDRFLREQIEKTRDGYIDISLLASFNKMKKITTDSK 90
Query: 76 VIVDALKKSTSKLIEVNEDGTKIRRN-PEKELPTFDIDFVKDLIAQSLYVKYIPVDATLD 134
+I A+K S+ ++E+N GTKIRR P E P +D+ ++++YV+ +P + T
Sbjct: 91 LIARAVKNSS--VVEINLSGTKIRRRFPLGEKP-------QDVDSRTVYVELLPKNVTHS 141
Query: 135 DIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEK---FLNENKD 191
I+ F K + + + Y+ + KG F+ F+ +E A K LN +
Sbjct: 142 WIERVFGKYGM----VVYVSIPRYK----STGDPKGFAFIEFETQEQAAKAIEVLNNPPE 193
Query: 192 KNLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSL 227
+ + A F K+K+L E EHS+
Sbjct: 194 EA--------PRKAGMFPKTVKNKHLPPVEVTEHSI 221
>sp|Q4G0J3|LARP7_HUMAN La-related protein 7 OS=Homo sapiens GN=LARP7 PE=1 SV=1
Length = 582
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 97/167 (58%), Gaps = 22/167 (13%)
Query: 26 IIEQIEYYFSDINLARDKFLQGEIKKD-DGWVELTTMLKFARLAKMTTEAKVIVDALKKS 84
I +Q++++F D NL +D+FL+ +I+K DG+V+++ ++ F ++ K+TT+ K+I AL+
Sbjct: 38 IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALR-- 95
Query: 85 TSKLIEVNEDGTKIRR-NPEKELPTFDIDFVKDLIAQSLYVKYIPVDATLDDIKDFFKKN 143
+S ++E++ +GT+IRR P E P KD +++YV+ +P + I+ F K
Sbjct: 96 SSAVVELDLEGTRIRRKKPLGERP-------KDEDERTVYVELLPKNVNHSWIERVFGKC 148
Query: 144 TSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEK---FLN 187
+ + I + +Y+ + KG FV F+ KE A K FLN
Sbjct: 149 GN----VVYISIPHYK----STGDPKGFAFVEFETKEQAAKAIEFLN 187
>sp|Q4R627|LARP7_MACFA La-related protein 7 OS=Macaca fascicularis GN=LARP7 PE=2 SV=1
Length = 581
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 97/167 (58%), Gaps = 22/167 (13%)
Query: 26 IIEQIEYYFSDINLARDKFLQGEIKKD-DGWVELTTMLKFARLAKMTTEAKVIVDALKKS 84
I +Q++++F D NL +D+FL+ +I+K DG+V+++ ++ F ++ K+TT+ K+I AL+
Sbjct: 38 IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALR-- 95
Query: 85 TSKLIEVNEDGTKIRR-NPEKELPTFDIDFVKDLIAQSLYVKYIPVDATLDDIKDFFKKN 143
+S ++E++ +GT+IRR P E P KD +++YV+ +P + I+ F K
Sbjct: 96 SSAVVELDLEGTRIRRKKPLGERP-------KDEDERTVYVELLPKNVNHSWIERVFGKC 148
Query: 144 TSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEK---FLN 187
+ + I + +Y+ + KG FV F+ KE A K FLN
Sbjct: 149 GN----VVYISIPHYK----STGDPKGFAFVEFETKEQAAKAIEFLN 187
>sp|P33399|LHP1_YEAST La protein homolog OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=LHP1 PE=1 SV=2
Length = 275
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 94/175 (53%), Gaps = 28/175 (16%)
Query: 24 NQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDALKK 83
++ ++Q+E+YFS+ N D+FL+ +K+DGWV ++T+ F R+ K KVI +AL+
Sbjct: 31 DRCLKQVEFYFSEFNFPYDRFLRTTAEKNDGWVPISTIATFNRMKKYRPVDKVI-EALR- 88
Query: 84 STSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDL-IAQ---SLYVKYIP---VDAT---- 132
+S+++EV+ DG ++R +P D+ ++ I Q +L V P V+A+
Sbjct: 89 -SSEILEVSADGENVKRR----VP-LDLTAARNARIEQNQRTLAVMNFPHEDVEASQIPE 142
Query: 133 -LDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFL 186
++++ FFKK +I + +R + KKF G++ V F E FL
Sbjct: 143 LQENLEAFFKKLG----EINQVRLR----RDHRNKKFNGTVLVEFKTIPECEAFL 189
>sp|Q9I7T7|Y1505_DROME La-related protein CG11505 OS=Drosophila melanogaster GN=CG11505
PE=1 SV=2
Length = 1531
Score = 58.2 bits (139), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/185 (24%), Positives = 88/185 (47%), Gaps = 33/185 (17%)
Query: 2 AETDSSATNGNSGAEAEV--SKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELT 59
A+ + N G E + KL+ + Q+EYYFS NLA D +L ++ D +V +
Sbjct: 246 ADPQQGSHNAAGGEEPNIPLDKLKQMLATQLEYYFSRENLANDTYLLSQMDSDQ-YVPIY 304
Query: 60 TMLKFARLAKMTTEAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIA 119
T+ +F + K+T + +I + L++S + ++V++ G ++R N ++ +
Sbjct: 305 TVARFNLVRKLTNDINLITEVLRESPN--VQVDDKGLRVRPNRKRCI------------- 349
Query: 120 QSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNK 179
+ ++ I + LDD+K F N S I+ N S ++TF++
Sbjct: 350 --IILREISNNTPLDDVKALF-SNESCPRPISCEFAAN------------NSWYITFESD 394
Query: 180 ENAEK 184
E+A+K
Sbjct: 395 EDAQK 399
>sp|Q6PKG0|LARP1_HUMAN La-related protein 1 OS=Homo sapiens GN=LARP1 PE=1 SV=2
Length = 1096
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 22 LENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDAL 81
L++ I QIEYYFS NL RD FL+ ++ DG++ +T + F R+ +TT+ +I AL
Sbjct: 403 LKDYIKRQIEYYFSVDNLERDFFLRRKMDA-DGFLPITLIASFHRVQALTTDISLIFAAL 461
Query: 82 KKSTSKLIEVNEDGTKIRRNPEK-ELPTFDIDFVKDLIAQSL 122
K SK++E+ ++ + R PEK LP +D+ + +Q L
Sbjct: 462 KD--SKVVEIVDEKVRRREEPEKWPLPPI-VDYSQTDFSQLL 500
>sp|Q8BN59|LARP6_MOUSE La-related protein 6 OS=Mus musculus GN=Larp6 PE=1 SV=1
Length = 492
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 14/110 (12%)
Query: 22 LENQIIEQIEYYFSDINLARDKFLQGEIKKDD-GWVELTTMLKFARLAKMTTEAKVIVDA 80
L ++++QIE+YFSD NL +D FL ++++ G+V + + F ++ +T + + A
Sbjct: 92 LIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTAHA 151
Query: 81 LKKSTSKLIEVNEDGTKIRRN-----------PEKELPTFDIDFVKDLIA 119
LK S + +E+NED K+RR P K L +D+ L A
Sbjct: 152 LKYSVT--LELNEDHRKVRRTTPVPLFPNENLPSKMLLVYDLHLSPKLWA 199
>sp|Q6ZQ58|LARP1_MOUSE La-related protein 1 OS=Mus musculus GN=Larp1 PE=1 SV=2
Length = 1072
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 61/103 (59%), Gaps = 5/103 (4%)
Query: 22 LENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDAL 81
L++ I QIEYYFS NL RD FL+ ++ DG++ +T + F R+ +TT+ +I AL
Sbjct: 378 LKDYIKRQIEYYFSVDNLERDFFLRRKMDA-DGFLPITLIASFHRVQALTTDISLIFAAL 436
Query: 82 KKSTSKLIEVNEDGTKIRRNPEK-ELPTFDI-DFVKDLIAQSL 122
K SK++E+ E+ + R PEK LP I D+ + +Q L
Sbjct: 437 KD--SKVVEMVEEKVRRREEPEKWPLPGPPIVDYSQTDFSQLL 477
>sp|Q9BRS8|LARP6_HUMAN La-related protein 6 OS=Homo sapiens GN=LARP6 PE=1 SV=1
Length = 491
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 15/107 (14%)
Query: 25 QIIEQIEYYFSDINLARDKFLQGEIKKDD-GWVELTTMLKFARLAKMTTEAKVIVDALKK 83
++++QIE+YFSD NL +D FL ++++ G+V + + F ++ +T + + ALK
Sbjct: 95 KLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTAHALKY 154
Query: 84 STSKLIEVNEDGTKIRRN------PEKELPTFDIDFVKDLIAQSLYV 124
S ++E+NED K+RR P + LP+ K L+ LY+
Sbjct: 155 SV--VLELNEDHRKVRRTTPVPLFPNENLPS------KMLLVYDLYL 193
>sp|Q659C4|LAR1B_HUMAN La-related protein 1B OS=Homo sapiens GN=LARP1B PE=1 SV=2
Length = 914
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
Query: 22 LENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDAL 81
L+ I QIEYYFS NL RD FL+G++ + G++ ++ + F R+ +TT +I++AL
Sbjct: 215 LKEYIKRQIEYYFSVENLERDFFLRGKM-DEQGFLPISLIAGFQRVQALTTNLNLILEAL 273
Query: 82 KKSTSKLIEVNEDGTKIRRNPEK 104
K ST +E+ ++ + + PEK
Sbjct: 274 KDSTE--VEIVDEKMRKKIEPEK 294
>sp|Q9P6K0|YLA3_SCHPO Uncharacterized HTH La-type RNA-binding protein C1527.03
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC1527.03 PE=1 SV=1
Length = 475
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 10 NGNSGAEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAK 69
NGN G + ++ + Q+EYYFS NL +D FL+ + D+G+V L + F R+
Sbjct: 314 NGN-GVNPYLCDVQAFLTSQLEYYFSIENLCKDMFLRKHM-DDEGYVPLAFLASFNRIKS 371
Query: 70 MTTEAKVIVDALKKSTSKLIEVNED-----GTKIRR 100
+T+ ++ A K S +I+V D K+RR
Sbjct: 372 FSTDLNLLHAACK--ASDIIDVAIDLQSPMSIKVRR 405
>sp|P25567|SRO9_YEAST RNA-binding protein SRO9 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SRO9 PE=1 SV=2
Length = 434
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 8/75 (10%)
Query: 24 NQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMT--TEAKVIVDAL 81
N I QIEYYFS+ NL D +L+ ++ K DG+ L+ + KF R+ M+ + +I+ AL
Sbjct: 263 NNIARQIEYYFSEENLTVDNYLRSKLSK-DGFAPLSLISKFYRVVNMSFGGDTNLILAAL 321
Query: 82 KKSTSKLIEVNEDGT 96
++ I NE T
Sbjct: 322 RE-----IVANEAAT 331
>sp|Q9VAW5|LARP_DROME La-related protein OS=Drosophila melanogaster GN=larp PE=1 SV=5
Length = 1673
Score = 45.8 bits (107), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 16 EAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAK 75
E + + ++ I +Q+EYYFS NL D FL+ ++ + G++ +T + F R+ +TT+
Sbjct: 723 ELDANSIKEAIKKQVEYYFSVDNLTGDFFLRRKMDPE-GYIPVTLIASFHRVLALTTDVA 781
Query: 76 VIVDALKKS 84
VIV+A+K+S
Sbjct: 782 VIVNAIKES 790
>sp|Q71RC2|LARP4_HUMAN La-related protein 4 OS=Homo sapiens GN=LARP4 PE=1 SV=3
Length = 724
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 69/132 (52%), Gaps = 18/132 (13%)
Query: 10 NGNSGAEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAK 69
+G S + L+ + +Q+E+ FS NL++D +L ++ D ++ + T+ + K
Sbjct: 107 SGESNSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQ-FIPIWTVANMEEIKK 165
Query: 70 MTTEAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPV 129
+TT+ +I++ L+ +S +++V+E G K+R + ++ + + ++ IP
Sbjct: 166 LTTDPDLILEVLR--SSPMVQVDEKGEKVRPSHKRCI---------------VILREIPE 208
Query: 130 DATLDDIKDFFK 141
++++K FK
Sbjct: 209 TTPIEEVKGLFK 220
>sp|Q8BWW4|LARP4_MOUSE La-related protein 4 OS=Mus musculus GN=Larp4 PE=1 SV=2
Length = 719
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 10 NGNSGAEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAK 69
+G S + L+ + +Q+E+ FS NL++D +L ++ D +V + T+ + K
Sbjct: 103 SGESSSAISTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQ-FVPIWTVANMEEIKK 161
Query: 70 MTTEAKVIVDALKKSTSKLIEVNEDGTKIR 99
+TT +I++ L+ +S +++V+E G K+R
Sbjct: 162 LTTNTDLILEVLR--SSPMVQVDEKGEKVR 189
>sp|Q6A0A2|LAR4B_MOUSE La-related protein 4B OS=Mus musculus GN=Larp4b PE=1 SV=2
Length = 741
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 30 IEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDALKKSTSKLI 89
+E+ S NLA D +L ++ D +V +TT+ + K++T+ +IV+ L+ + L+
Sbjct: 166 LEFCLSRENLASDMYLISQMDSDQ-YVPITTVANLDHIKKLSTDVDLIVEVLR--SLPLV 222
Query: 90 EVNEDGTKIRRN 101
+V+E G K+R N
Sbjct: 223 QVDEKGEKVRPN 234
>sp|Q92615|LAR4B_HUMAN La-related protein 4B OS=Homo sapiens GN=LARP4B PE=1 SV=3
Length = 738
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 30 IEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDALKKSTSKLI 89
+E+ S NLA D +L ++ D +V +TT+ + K++T+ +IV+ L+ + L+
Sbjct: 164 LEFCLSRENLASDMYLISQMDSDQ-YVPITTVANLDHIKKLSTDVDLIVEVLR--SLPLV 220
Query: 90 EVNEDGTKIRRN 101
+V+E G K+R N
Sbjct: 221 QVDEKGEKVRPN 232
>sp|Q12034|SLF1_YEAST Protein SLF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SLF1 PE=1 SV=1
Length = 447
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 26 IIEQIEYYFSDINLARDKFLQGEIKK-DDGWVELTTMLKFARLAKMT 71
I QIE+YFS+ NL D+FL+ + KK +DG++ ++ + KF R+ ++
Sbjct: 275 IKNQIEFYFSEENLKTDEFLRSKFKKANDGFIPMSLIGKFYRMVNLS 321
>sp|Q8IY67|RAVR1_HUMAN Ribonucleoprotein PTB-binding 1 OS=Homo sapiens GN=RAVER1 PE=1 SV=1
Length = 606
Score = 39.3 bits (90), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 24/106 (22%)
Query: 99 RRNPEKELPTFDIDFVKDLIAQS---------LYVKYIPVDATLDDIKDFFKKNTSEDVK 149
RR PE+ELP D + ++ + + + ++ +P D T ++ D
Sbjct: 29 RRAPEEELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHD----------- 77
Query: 150 ITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLK 195
++ +Y+ K K+KG+ FVT N E AE +N L+
Sbjct: 78 ----LLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLR 119
>sp|Q5XI28|RAVR1_RAT Ribonucleoprotein PTB-binding 1 OS=Rattus norvegicus GN=Raver1 PE=2
SV=1
Length = 748
Score = 38.9 bits (89), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 24/106 (22%)
Query: 99 RRNPEKELPTFDIDFVKDLIAQS---------LYVKYIPVDATLDDIKDFFKKNTSEDVK 149
RR PE+ELP D + ++ + + + ++ +P D T ++ D
Sbjct: 29 RRTPEQELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHD----------- 77
Query: 150 ITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLK 195
++ +Y+ K K+KG+ FVT N E AE +N L+
Sbjct: 78 ----LLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINTFHQSRLR 119
>sp|Q9CW46|RAVR1_MOUSE Ribonucleoprotein PTB-binding 1 OS=Mus musculus GN=Raver1 PE=1 SV=2
Length = 748
Score = 38.5 bits (88), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 24/106 (22%)
Query: 99 RRNPEKELPTFDIDFVKDLIAQS---------LYVKYIPVDATLDDIKDFFKKNTSEDVK 149
RR PE+ELP D + ++ + + + ++ +P D T ++ D
Sbjct: 29 RRAPEQELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHD----------- 77
Query: 150 ITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLK 195
++ +Y+ K K+KG+ FVT N E AE +N L+
Sbjct: 78 ----LLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINTFHQSRLR 119
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.130 0.349
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149,394,105
Number of Sequences: 539616
Number of extensions: 6784048
Number of successful extensions: 38018
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 655
Number of HSP's that attempted gapping in prelim test: 33750
Number of HSP's gapped (non-prelim): 3786
length of query: 410
length of database: 191,569,459
effective HSP length: 120
effective length of query: 290
effective length of database: 126,815,539
effective search space: 36776506310
effective search space used: 36776506310
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.5 bits)