Query psy5142
Match_columns 410
No_of_seqs 321 out of 2280
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 18:24:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5142.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5142hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4213|consensus 100.0 3.2E-33 7E-38 241.2 10.6 168 15-196 6-174 (205)
2 KOG1855|consensus 100.0 1.3E-32 2.7E-37 265.6 11.2 163 17-190 135-307 (484)
3 cd08032 LARP_7 La RNA-binding 100.0 2.5E-30 5.4E-35 200.6 7.9 79 20-100 3-82 (82)
4 cd08028 LARP_3 La RNA-binding 100.0 3E-30 6.5E-35 200.6 7.6 82 19-100 1-82 (82)
5 cd08033 LARP_6 La RNA-binding 100.0 5.9E-30 1.3E-34 196.6 6.5 75 24-100 2-77 (77)
6 smart00715 LA Domain in the RN 100.0 1.6E-29 3.5E-34 196.4 7.4 80 20-101 1-80 (80)
7 cd08035 LARP_4 La RNA-binding 100.0 3.4E-29 7.4E-34 189.7 6.8 74 24-100 2-75 (75)
8 cd08036 LARP_5 La RNA-binding 100.0 2.4E-29 5.2E-34 188.8 5.1 74 24-100 2-75 (75)
9 cd08029 LA_like_fungal La-moti 100.0 8E-29 1.7E-33 190.3 6.6 74 24-100 2-76 (76)
10 TIGR01659 sex-lethal sex-letha 100.0 5.7E-27 1.2E-31 231.8 19.8 161 117-353 105-273 (346)
11 cd08031 LARP_4_5_like La RNA-b 99.9 2.3E-28 5E-33 186.8 7.0 74 24-100 2-75 (75)
12 cd08030 LA_like_plant La-motif 99.9 3.9E-28 8.5E-33 191.2 6.1 76 23-100 2-90 (90)
13 cd08037 LARP_1 La RNA-binding 99.9 1.9E-27 4.2E-32 179.7 6.9 72 24-100 2-73 (73)
14 cd08038 LARP_2 La RNA-binding 99.9 3E-27 6.5E-32 178.7 7.0 72 24-100 2-73 (73)
15 cd08034 LARP_1_2 La RNA-bindin 99.9 4E-27 8.7E-32 178.8 6.8 72 24-100 2-73 (73)
16 cd07323 LAM LA motif RNA-bindi 99.9 7.9E-27 1.7E-31 179.6 6.7 74 24-100 2-75 (75)
17 KOG0117|consensus 99.9 5.8E-23 1.3E-27 199.8 20.0 266 75-364 45-340 (506)
18 TIGR01648 hnRNP-R-Q heterogene 99.9 1.2E-22 2.6E-27 211.1 19.9 228 104-361 45-313 (578)
19 PF05383 La: La domain; Inter 99.9 4.1E-24 8.8E-29 157.7 4.5 57 26-82 1-59 (61)
20 KOG2591|consensus 99.9 5.3E-23 1.1E-27 204.2 12.3 137 21-190 95-233 (684)
21 TIGR01645 half-pint poly-U bin 99.9 3.3E-22 7.1E-27 208.3 18.1 171 118-353 106-282 (612)
22 TIGR01622 SF-CC1 splicing fact 99.9 1.9E-21 4.2E-26 200.5 19.5 173 116-353 86-264 (457)
23 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 5.8E-21 1.2E-25 190.3 21.2 232 73-355 54-349 (352)
24 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 1.7E-21 3.8E-26 194.0 17.2 159 119-353 3-169 (352)
25 KOG0148|consensus 99.9 8.1E-22 1.8E-26 181.1 11.7 172 119-350 62-233 (321)
26 TIGR01628 PABP-1234 polyadenyl 99.9 1.8E-20 3.8E-25 198.3 22.6 187 117-358 176-367 (562)
27 PF08777 RRM_3: RNA binding mo 99.9 8.4E-22 1.8E-26 162.1 9.5 96 275-374 1-99 (105)
28 KOG0127|consensus 99.8 6.6E-20 1.4E-24 182.2 20.9 281 27-361 19-384 (678)
29 TIGR01628 PABP-1234 polyadenyl 99.8 1.9E-20 4.1E-25 198.0 17.1 158 121-352 2-164 (562)
30 TIGR01642 U2AF_lg U2 snRNP aux 99.8 6.4E-19 1.4E-23 184.1 19.4 186 115-352 171-372 (509)
31 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 9.9E-19 2.1E-23 181.5 18.6 166 119-352 2-171 (481)
32 TIGR01642 U2AF_lg U2 snRNP aux 99.8 5.2E-18 1.1E-22 177.3 21.0 188 118-353 294-500 (509)
33 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 5.4E-18 1.2E-22 175.9 19.4 187 118-352 274-477 (481)
34 KOG0145|consensus 99.8 8.6E-19 1.9E-23 160.3 11.2 165 117-355 39-209 (360)
35 KOG0131|consensus 99.8 3E-18 6.6E-23 149.5 10.4 165 118-353 8-175 (203)
36 KOG0144|consensus 99.7 6.3E-18 1.4E-22 164.2 11.6 172 116-358 31-209 (510)
37 KOG0127|consensus 99.7 1.1E-17 2.4E-22 166.6 13.4 182 119-352 5-193 (678)
38 TIGR01622 SF-CC1 splicing fact 99.7 8.5E-17 1.8E-21 166.0 18.4 193 119-353 186-446 (457)
39 KOG0145|consensus 99.7 7.2E-16 1.6E-20 141.2 16.3 244 73-353 92-356 (360)
40 KOG0124|consensus 99.7 2.3E-16 5E-21 150.3 13.0 162 118-350 112-285 (544)
41 KOG0123|consensus 99.7 1.2E-15 2.7E-20 152.1 15.5 153 120-359 2-157 (369)
42 COG5193 LHP1 La protein, small 99.6 3.8E-17 8.2E-22 157.9 1.1 151 26-189 75-246 (438)
43 KOG0105|consensus 99.6 9.6E-15 2.1E-19 127.8 15.3 176 117-351 4-186 (241)
44 KOG0110|consensus 99.6 6.7E-15 1.4E-19 151.1 11.5 174 120-357 516-695 (725)
45 KOG0109|consensus 99.6 6.8E-15 1.5E-19 136.9 9.1 145 121-353 4-148 (346)
46 KOG0147|consensus 99.5 1.1E-14 2.3E-19 146.1 8.8 177 114-353 174-356 (549)
47 TIGR01645 half-pint poly-U bin 99.5 8.8E-13 1.9E-17 138.1 22.2 109 73-191 158-268 (612)
48 PLN03134 glycine-rich RNA-bind 99.5 1.6E-13 3.5E-18 119.7 12.0 75 273-353 32-112 (144)
49 KOG4211|consensus 99.5 2.4E-13 5.3E-18 134.8 14.2 169 119-358 10-185 (510)
50 KOG4205|consensus 99.5 7.5E-14 1.6E-18 135.1 9.3 169 118-358 5-179 (311)
51 KOG0144|consensus 99.5 1.4E-13 3E-18 134.3 10.2 140 21-191 46-187 (510)
52 KOG0146|consensus 99.5 1.5E-13 3.3E-18 126.5 9.9 66 117-191 17-82 (371)
53 KOG4206|consensus 99.5 1.2E-12 2.6E-17 118.7 15.1 186 120-350 10-217 (221)
54 KOG0123|consensus 99.5 4.6E-13 1E-17 133.7 12.4 178 117-353 165-347 (369)
55 PLN03134 glycine-rich RNA-bind 99.4 7.4E-13 1.6E-17 115.5 8.7 69 118-196 33-101 (144)
56 KOG0110|consensus 99.4 4.6E-12 1E-16 130.5 14.1 214 115-363 381-612 (725)
57 PF00076 RRM_1: RNA recognitio 99.4 2.5E-12 5.3E-17 97.1 7.4 64 122-196 1-64 (70)
58 KOG0106|consensus 99.3 2E-12 4.4E-17 118.2 7.6 167 120-352 2-168 (216)
59 KOG0147|consensus 99.3 5.4E-12 1.2E-16 126.8 10.1 220 121-367 280-537 (549)
60 KOG1548|consensus 99.3 2.9E-11 6.3E-16 115.4 12.5 194 117-354 132-351 (382)
61 PF14259 RRM_6: RNA recognitio 99.3 1.2E-11 2.6E-16 93.9 7.3 64 122-196 1-64 (70)
62 PLN03120 nucleic acid binding 99.2 2.4E-11 5.3E-16 114.0 7.3 64 119-196 4-67 (260)
63 TIGR01659 sex-lethal sex-letha 99.2 6.2E-11 1.3E-15 117.7 10.2 100 73-191 158-257 (346)
64 PF00076 RRM_1: RNA recognitio 99.2 9.9E-11 2.2E-15 88.2 8.4 65 278-348 1-70 (70)
65 KOG0121|consensus 99.2 5.1E-11 1.1E-15 98.8 6.4 72 115-196 32-103 (153)
66 KOG0122|consensus 99.2 5.3E-11 1.2E-15 108.8 6.6 67 117-191 187-253 (270)
67 COG0724 RNA-binding proteins ( 99.1 3.7E-10 7.9E-15 106.2 11.2 145 119-314 115-260 (306)
68 KOG4212|consensus 99.1 5.6E-10 1.2E-14 109.4 12.5 191 117-351 42-290 (608)
69 KOG1457|consensus 99.1 2.2E-10 4.8E-15 103.4 8.8 209 118-337 33-270 (284)
70 KOG0148|consensus 99.1 5E-10 1.1E-14 103.8 10.3 71 277-353 64-140 (321)
71 KOG0107|consensus 99.1 8.3E-10 1.8E-14 96.4 10.9 77 273-355 8-85 (195)
72 smart00362 RRM_2 RNA recogniti 99.1 5.2E-10 1.1E-14 83.5 7.8 61 121-191 1-61 (72)
73 KOG0149|consensus 99.1 3.3E-10 7.1E-15 103.3 7.3 66 117-190 10-75 (247)
74 KOG0105|consensus 99.1 7E-10 1.5E-14 97.5 8.9 73 275-353 6-81 (241)
75 PLN03213 repressor of silencin 99.0 7E-10 1.5E-14 110.1 9.3 90 117-246 8-100 (759)
76 PLN03121 nucleic acid binding 99.0 4.9E-10 1.1E-14 103.7 7.2 64 119-196 5-68 (243)
77 PF14259 RRM_6: RNA recognitio 99.0 1.5E-09 3.4E-14 82.2 8.0 65 278-348 1-70 (70)
78 KOG0113|consensus 99.0 8.7E-10 1.9E-14 103.5 7.1 70 117-196 99-168 (335)
79 KOG4207|consensus 99.0 1.4E-09 3.1E-14 97.2 7.9 76 272-353 10-91 (256)
80 cd00590 RRM RRM (RNA recogniti 99.0 2.2E-09 4.7E-14 80.5 7.9 62 121-191 1-62 (74)
81 TIGR01648 hnRNP-R-Q heterogene 99.0 3.9E-09 8.5E-14 110.6 12.4 133 119-300 233-366 (578)
82 KOG0107|consensus 99.0 8.2E-10 1.8E-14 96.5 5.6 61 119-192 10-70 (195)
83 smart00362 RRM_2 RNA recogniti 99.0 4.7E-09 1E-13 78.2 9.0 66 278-349 2-71 (72)
84 smart00360 RRM RNA recognition 99.0 2.4E-09 5.1E-14 79.5 7.2 60 124-191 1-60 (71)
85 KOG4207|consensus 98.9 9.6E-10 2.1E-14 98.3 5.5 68 119-196 13-80 (256)
86 PLN03120 nucleic acid binding 98.9 6.5E-09 1.4E-13 97.7 10.1 72 275-353 4-78 (260)
87 KOG0114|consensus 98.9 6.1E-09 1.3E-13 83.4 8.0 62 119-191 18-79 (124)
88 KOG0126|consensus 98.9 7E-11 1.5E-15 103.6 -3.6 70 117-196 33-102 (219)
89 PLN03121 nucleic acid binding 98.9 1.2E-08 2.7E-13 94.5 10.4 75 273-354 3-80 (243)
90 PLN03213 repressor of silencin 98.9 2.2E-08 4.7E-13 99.7 12.4 90 272-371 7-100 (759)
91 KOG0125|consensus 98.9 2.6E-09 5.7E-14 101.5 5.5 65 117-191 94-158 (376)
92 KOG1365|consensus 98.8 3.8E-08 8.2E-13 95.3 12.8 195 119-358 161-365 (508)
93 KOG0108|consensus 98.8 5.5E-09 1.2E-13 105.7 6.6 80 120-235 19-98 (435)
94 smart00360 RRM RNA recognition 98.8 3.1E-08 6.7E-13 73.4 7.8 64 280-349 1-70 (71)
95 KOG0130|consensus 98.8 1.5E-08 3.3E-13 84.9 6.0 67 117-191 70-136 (170)
96 cd00590 RRM RRM (RNA recogniti 98.7 8.3E-08 1.8E-12 71.8 9.3 67 278-350 2-73 (74)
97 KOG0111|consensus 98.7 3.9E-09 8.4E-14 95.2 2.2 67 117-191 8-74 (298)
98 KOG1190|consensus 98.7 8.7E-08 1.9E-12 93.6 10.5 175 118-338 27-211 (492)
99 COG5193 LHP1 La protein, small 98.7 8E-09 1.7E-13 100.7 2.9 61 22-83 270-330 (438)
100 KOG0121|consensus 98.7 7.9E-08 1.7E-12 80.0 7.8 76 273-354 34-115 (153)
101 KOG0125|consensus 98.6 9.9E-08 2.1E-12 90.9 8.7 74 275-354 96-173 (376)
102 PF13893 RRM_5: RNA recognitio 98.6 1.8E-07 3.8E-12 67.8 8.2 54 292-351 1-55 (56)
103 KOG0114|consensus 98.6 4E-07 8.6E-12 73.2 10.6 79 273-357 16-97 (124)
104 KOG4212|consensus 98.6 7E-08 1.5E-12 94.9 6.8 74 272-351 533-607 (608)
105 KOG0116|consensus 98.6 8.3E-08 1.8E-12 96.7 7.5 70 275-351 288-363 (419)
106 smart00361 RRM_1 RNA recogniti 98.6 9.7E-08 2.1E-12 72.7 6.1 51 133-191 2-59 (70)
107 KOG0113|consensus 98.6 2.2E-07 4.7E-12 87.6 9.4 77 272-354 98-180 (335)
108 KOG0122|consensus 98.6 1.5E-07 3.3E-12 86.4 8.0 74 274-353 188-267 (270)
109 KOG1190|consensus 98.6 5.1E-07 1.1E-11 88.3 11.9 188 119-351 297-487 (492)
110 KOG0124|consensus 98.6 2.6E-06 5.6E-11 82.3 15.6 105 76-190 167-273 (544)
111 KOG2590|consensus 98.5 1.8E-08 3.8E-13 101.6 0.7 68 18-93 296-363 (448)
112 KOG0120|consensus 98.5 2.8E-07 6E-12 94.2 8.5 183 118-353 288-490 (500)
113 PF13893 RRM_5: RNA recognitio 98.5 2.8E-07 6E-12 66.8 5.7 46 136-196 1-46 (56)
114 COG0724 RNA-binding proteins ( 98.5 8.7E-07 1.9E-11 83.1 9.8 74 275-354 115-194 (306)
115 KOG0149|consensus 98.4 5.6E-07 1.2E-11 82.4 6.3 71 275-352 12-88 (247)
116 KOG0109|consensus 98.4 7E-07 1.5E-11 84.0 6.6 70 277-354 4-73 (346)
117 KOG0130|consensus 98.4 9E-07 2E-11 74.4 6.3 77 269-351 66-148 (170)
118 KOG4211|consensus 98.4 9.9E-06 2.2E-10 81.3 14.7 64 118-190 102-166 (510)
119 KOG0131|consensus 98.3 9.7E-07 2.1E-11 77.9 6.2 76 272-353 6-87 (203)
120 KOG0128|consensus 98.3 5E-08 1.1E-12 102.9 -2.9 142 117-351 665-811 (881)
121 KOG0132|consensus 98.3 1.4E-06 3.1E-11 91.2 7.0 62 116-191 418-479 (894)
122 KOG0146|consensus 98.2 1.7E-06 3.7E-11 80.5 6.0 75 109-191 275-349 (371)
123 KOG0112|consensus 98.2 1.3E-06 2.8E-11 92.9 5.8 159 115-352 368-528 (975)
124 KOG4454|consensus 98.2 4.2E-07 9.1E-12 82.3 1.7 63 119-191 9-71 (267)
125 KOG4208|consensus 98.2 2.4E-06 5.1E-11 76.9 6.4 67 118-191 48-114 (214)
126 KOG0153|consensus 98.2 4.5E-06 9.7E-11 80.4 8.6 75 274-353 227-301 (377)
127 KOG0129|consensus 98.2 2.3E-05 5E-10 79.2 13.3 166 114-335 254-433 (520)
128 KOG0117|consensus 98.2 6.7E-06 1.4E-10 81.6 9.0 75 270-350 78-159 (506)
129 smart00361 RRM_1 RNA recogniti 98.1 1.1E-05 2.3E-10 61.4 7.2 55 289-349 2-69 (70)
130 KOG0153|consensus 98.1 4.3E-06 9.2E-11 80.6 5.4 62 115-190 224-285 (377)
131 KOG1456|consensus 98.1 5.9E-05 1.3E-09 73.4 12.8 165 119-354 31-198 (494)
132 KOG4205|consensus 98.0 3.2E-06 6.9E-11 82.3 3.1 64 118-189 96-159 (311)
133 KOG1456|consensus 98.0 9.8E-05 2.1E-09 71.9 12.4 182 118-344 286-474 (494)
134 KOG0116|consensus 98.0 7.3E-06 1.6E-10 82.8 4.7 68 118-196 287-354 (419)
135 KOG0533|consensus 98.0 1.9E-05 4.2E-10 74.1 7.2 77 276-358 84-165 (243)
136 KOG0132|consensus 98.0 1.8E-05 4E-10 83.1 7.5 83 275-363 421-507 (894)
137 KOG4209|consensus 98.0 7.6E-06 1.7E-10 76.8 4.3 70 113-191 95-164 (231)
138 KOG0111|consensus 97.9 6.8E-06 1.5E-10 74.5 3.6 75 274-354 9-89 (298)
139 KOG0126|consensus 97.9 1.8E-06 4E-11 76.1 0.0 76 272-353 32-113 (219)
140 KOG1365|consensus 97.9 8.8E-05 1.9E-09 72.4 10.8 157 121-335 62-226 (508)
141 KOG0533|consensus 97.9 2.9E-05 6.3E-10 72.9 6.8 64 119-191 83-146 (243)
142 KOG0415|consensus 97.8 4.2E-05 9.1E-10 73.9 7.4 77 271-353 235-317 (479)
143 KOG0108|consensus 97.8 4.6E-05 1E-09 77.5 7.5 74 276-355 19-98 (435)
144 KOG0415|consensus 97.8 2.8E-05 6E-10 75.1 5.2 67 117-191 237-303 (479)
145 PF04059 RRM_2: RNA recognitio 97.8 0.00013 2.8E-09 59.0 8.0 69 120-196 2-70 (97)
146 KOG4206|consensus 97.7 0.00015 3.3E-09 66.4 7.6 75 273-353 7-88 (221)
147 KOG4210|consensus 97.6 4.4E-05 9.5E-10 74.0 4.3 166 118-349 87-258 (285)
148 KOG0120|consensus 97.6 0.00013 2.8E-09 74.9 7.8 181 115-352 171-366 (500)
149 KOG4660|consensus 97.6 8E-05 1.7E-09 76.0 5.6 64 115-191 71-134 (549)
150 KOG4661|consensus 97.5 0.00014 3.1E-09 74.1 6.0 66 117-190 403-468 (940)
151 KOG4208|consensus 97.5 0.00051 1.1E-08 62.1 8.1 76 275-355 49-130 (214)
152 KOG4661|consensus 97.4 0.00027 5.8E-09 72.2 6.7 75 273-353 403-483 (940)
153 PF08777 RRM_3: RNA binding mo 97.4 0.0003 6.5E-09 57.9 5.8 57 120-190 2-58 (105)
154 KOG0226|consensus 97.4 0.00037 8E-09 64.8 6.2 67 117-191 188-254 (290)
155 KOG4307|consensus 97.4 0.00052 1.1E-08 71.7 7.7 196 118-353 310-512 (944)
156 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.0005 1.1E-08 49.3 5.4 52 120-186 2-53 (53)
157 KOG1457|consensus 97.3 0.0013 2.9E-08 60.1 8.6 74 276-353 35-116 (284)
158 KOG2193|consensus 97.1 0.00028 6.2E-09 69.7 2.7 148 120-351 2-153 (584)
159 PF14605 Nup35_RRM_2: Nup53/35 97.1 0.0016 3.4E-08 46.7 5.4 51 277-332 3-53 (53)
160 PF11608 Limkain-b1: Limkain b 97.0 0.0039 8.5E-08 48.6 7.6 68 276-352 3-74 (90)
161 KOG0106|consensus 96.9 0.0011 2.3E-08 61.2 4.2 67 277-351 3-69 (216)
162 PF11608 Limkain-b1: Limkain b 96.8 0.0036 7.8E-08 48.8 6.1 58 120-191 3-61 (90)
163 KOG4660|consensus 96.7 0.0011 2.4E-08 67.8 3.4 63 277-345 77-140 (549)
164 KOG0151|consensus 96.7 0.0024 5.1E-08 67.1 5.1 71 116-191 171-241 (877)
165 KOG4454|consensus 96.6 0.0014 3E-08 59.8 2.8 90 274-369 8-101 (267)
166 KOG0151|consensus 96.5 0.0048 1E-07 64.9 6.5 69 275-349 174-251 (877)
167 KOG1548|consensus 96.5 0.0095 2.1E-07 57.9 7.9 79 272-352 131-218 (382)
168 KOG4210|consensus 96.3 0.002 4.3E-08 62.5 1.9 62 119-188 184-246 (285)
169 PF10309 DUF2414: Protein of u 96.3 0.019 4.1E-07 42.4 6.5 54 277-335 7-62 (62)
170 KOG1995|consensus 96.2 0.0057 1.2E-07 59.8 4.7 76 272-353 63-152 (351)
171 KOG4307|consensus 96.1 0.0097 2.1E-07 62.5 5.7 66 117-191 865-931 (944)
172 COG5175 MOT2 Transcriptional r 96.0 0.025 5.4E-07 54.8 7.8 72 275-352 114-200 (480)
173 KOG2314|consensus 96.0 0.014 2.9E-07 60.1 6.2 66 118-192 57-128 (698)
174 KOG3152|consensus 96.0 0.0045 9.7E-08 57.8 2.5 63 276-344 75-155 (278)
175 KOG0226|consensus 95.9 0.012 2.6E-07 55.0 5.2 73 275-353 190-268 (290)
176 KOG4676|consensus 95.7 0.0095 2.1E-07 58.7 3.7 175 120-335 8-209 (479)
177 KOG1995|consensus 95.6 0.019 4E-07 56.3 5.3 67 117-191 64-138 (351)
178 PF05172 Nup35_RRM: Nup53/35/4 95.6 0.039 8.6E-07 44.9 6.2 69 117-190 4-75 (100)
179 COG5175 MOT2 Transcriptional r 95.3 0.036 7.8E-07 53.7 5.9 68 117-191 112-187 (480)
180 KOG4209|consensus 95.2 0.027 5.9E-07 53.0 4.7 73 273-352 99-177 (231)
181 PF08952 DUF1866: Domain of un 95.2 0.12 2.6E-06 44.8 8.3 57 290-355 51-107 (146)
182 PF04059 RRM_2: RNA recognitio 95.2 0.14 3E-06 41.5 8.2 59 276-336 2-66 (97)
183 PF08675 RNA_bind: RNA binding 95.1 0.061 1.3E-06 42.0 5.5 56 274-336 8-63 (87)
184 KOG0129|consensus 95.1 0.05 1.1E-06 55.7 6.4 64 118-189 369-433 (520)
185 PF05172 Nup35_RRM: Nup53/35/4 95.0 0.12 2.6E-06 42.1 7.5 66 276-349 7-85 (100)
186 KOG3152|consensus 94.5 0.027 5.8E-07 52.8 2.6 70 119-192 74-151 (278)
187 KOG0115|consensus 93.5 0.1 2.2E-06 49.0 4.5 78 274-351 30-110 (275)
188 KOG1855|consensus 93.5 0.054 1.2E-06 54.2 2.8 59 274-336 230-307 (484)
189 KOG4676|consensus 93.2 0.16 3.4E-06 50.4 5.4 71 277-353 9-88 (479)
190 KOG0128|consensus 93.1 0.048 1E-06 58.8 1.9 63 119-190 736-798 (881)
191 PF15023 DUF4523: Protein of u 93.1 0.2 4.3E-06 43.1 5.2 60 116-190 83-146 (166)
192 PF09421 FRQ: Frequency clock 92.8 0.13 2.8E-06 56.7 4.7 49 53-102 476-524 (989)
193 KOG2591|consensus 92.7 0.13 2.9E-06 53.0 4.3 77 272-353 172-250 (684)
194 KOG4849|consensus 92.2 0.42 9E-06 46.8 6.8 77 274-352 79-159 (498)
195 PF10309 DUF2414: Protein of u 92.1 0.95 2.1E-05 33.4 7.1 58 119-189 5-62 (62)
196 KOG3293|consensus 91.5 0.55 1.2E-05 38.9 5.8 15 339-353 58-72 (134)
197 KOG2416|consensus 91.0 0.13 2.8E-06 53.6 2.1 64 118-197 443-507 (718)
198 KOG4849|consensus 90.6 0.24 5.2E-06 48.4 3.4 66 117-190 78-145 (498)
199 KOG2202|consensus 90.5 0.14 2.9E-06 48.2 1.5 49 134-191 83-132 (260)
200 PF05918 API5: Apoptosis inhib 90.1 0.088 1.9E-06 55.4 0.0 7 44-50 178-184 (556)
201 KOG2416|consensus 89.2 0.48 1E-05 49.5 4.4 93 273-373 442-539 (718)
202 KOG2314|consensus 89.1 1.5 3.2E-05 45.7 7.9 73 275-353 58-142 (698)
203 PF07576 BRAP2: BRCA1-associat 89.1 2.6 5.6E-05 34.9 8.0 63 121-192 15-77 (110)
204 PF08675 RNA_bind: RNA binding 88.6 1.7 3.7E-05 34.1 6.1 54 121-190 10-63 (87)
205 KOG0115|consensus 88.4 0.45 9.8E-06 44.8 3.4 62 120-190 32-93 (275)
206 PF03467 Smg4_UPF3: Smg-4/UPF3 88.4 0.57 1.2E-05 42.2 4.0 70 117-196 5-80 (176)
207 KOG0804|consensus 88.3 1.2 2.6E-05 45.2 6.4 66 118-192 73-138 (493)
208 KOG2202|consensus 87.8 0.35 7.5E-06 45.5 2.2 57 290-352 83-145 (260)
209 KOG2068|consensus 87.3 0.35 7.6E-06 47.2 2.0 70 117-191 75-147 (327)
210 PF15023 DUF4523: Protein of u 87.0 2.6 5.6E-05 36.5 6.8 60 272-336 83-146 (166)
211 PF03467 Smg4_UPF3: Smg-4/UPF3 86.9 0.77 1.7E-05 41.4 3.9 58 275-336 7-76 (176)
212 PF05918 API5: Apoptosis inhib 84.8 0.29 6.2E-06 51.7 0.0 8 24-31 133-140 (556)
213 KOG1996|consensus 83.9 2.9 6.4E-05 40.2 6.3 58 289-352 300-364 (378)
214 PF01885 PTS_2-RNA: RNA 2'-pho 82.7 2.7 5.8E-05 38.2 5.4 55 53-107 30-87 (186)
215 KOG3973|consensus 82.1 0.9 2E-05 44.5 2.2 18 119-136 149-166 (465)
216 KOG4285|consensus 80.0 6.7 0.00015 38.0 7.2 71 275-353 197-268 (350)
217 KOG2278|consensus 77.5 3.7 7.9E-05 36.6 4.3 52 53-104 32-85 (207)
218 PF04847 Calcipressin: Calcipr 77.4 9.1 0.0002 34.7 7.0 61 288-352 8-68 (184)
219 KOG2193|consensus 76.0 2.6 5.7E-05 42.5 3.3 70 277-351 3-72 (584)
220 KOG2135|consensus 76.0 0.99 2.1E-05 46.0 0.4 61 116-190 369-430 (526)
221 PF08952 DUF1866: Domain of un 75.7 4.7 0.0001 35.0 4.5 61 117-196 25-94 (146)
222 KOG4483|consensus 73.2 7.1 0.00015 39.2 5.5 56 275-334 391-446 (528)
223 KOG2068|consensus 73.1 1.4 3.1E-05 43.1 0.7 71 276-352 78-160 (327)
224 PRK00819 RNA 2'-phosphotransfe 72.5 11 0.00024 34.1 6.2 82 53-142 31-112 (179)
225 PRK14548 50S ribosomal protein 72.1 14 0.00031 29.0 6.0 53 283-335 28-81 (84)
226 TIGR03636 L23_arch archaeal ri 71.5 16 0.00036 28.1 6.1 54 282-335 20-74 (77)
227 PRK11634 ATP-dependent RNA hel 69.1 18 0.0004 39.2 8.2 73 276-353 486-561 (629)
228 PF11767 SET_assoc: Histone ly 68.7 25 0.00055 26.3 6.4 52 286-346 11-62 (66)
229 KOG1996|consensus 68.3 12 0.00026 36.2 5.6 52 133-191 300-351 (378)
230 PF03880 DbpA: DbpA RNA bindin 68.2 22 0.00048 26.9 6.3 64 284-352 10-74 (74)
231 KOG2135|consensus 67.7 3.4 7.4E-05 42.3 2.0 71 275-352 372-443 (526)
232 COG4907 Predicted membrane pro 67.3 3.8 8.3E-05 41.9 2.3 17 319-335 515-532 (595)
233 KOG4574|consensus 67.2 2.9 6.3E-05 45.6 1.6 59 124-196 303-361 (1007)
234 KOG2318|consensus 66.8 19 0.00042 37.9 7.3 79 116-196 171-293 (650)
235 KOG0112|consensus 66.0 6.2 0.00014 43.5 3.7 61 117-191 453-513 (975)
236 cd04908 ACT_Bt0572_1 N-termina 65.6 16 0.00034 26.7 4.9 50 289-342 15-64 (66)
237 KOG4285|consensus 64.5 16 0.00035 35.4 5.8 57 119-190 197-253 (350)
238 PF00403 HMA: Heavy-metal-asso 60.8 34 0.00074 24.4 5.9 46 277-326 1-46 (62)
239 PF14111 DUF4283: Domain of un 60.0 16 0.00034 31.4 4.6 35 276-314 105-140 (153)
240 KOG4574|consensus 56.0 10 0.00022 41.7 3.1 69 280-352 303-371 (1007)
241 PF10567 Nab6_mRNP_bdg: RNA-re 53.2 28 0.0006 33.8 5.3 76 106-189 6-84 (309)
242 COG2608 CopZ Copper chaperone 53.0 52 0.0011 24.6 5.9 60 276-339 4-64 (71)
243 PF11767 SET_assoc: Histone ly 52.1 48 0.001 24.8 5.4 46 129-191 10-55 (66)
244 PF07292 NID: Nmi/IFP 35 domai 50.6 11 0.00023 30.0 1.7 64 77-141 10-74 (88)
245 PF07576 BRAP2: BRCA1-associat 48.3 1.5E+02 0.0033 24.4 8.4 60 275-337 12-76 (110)
246 PRK03717 ribonuclease P protei 47.6 76 0.0016 26.6 6.6 59 290-352 40-100 (120)
247 KOG2253|consensus 45.7 13 0.00029 39.6 2.1 71 271-350 36-106 (668)
248 PF03468 XS: XS domain; Inter 43.7 26 0.00055 29.3 3.1 57 121-188 10-76 (116)
249 COG1369 POP5 RNase P/RNase MRP 43.5 84 0.0018 26.6 6.1 64 285-352 27-100 (124)
250 PTZ00191 60S ribosomal protein 42.3 72 0.0016 27.8 5.7 56 275-335 83-142 (145)
251 PRK10590 ATP-dependent RNA hel 41.2 1.2E+02 0.0026 31.3 8.4 18 318-335 316-333 (456)
252 KOG2479|consensus 40.6 17 0.00037 37.0 1.8 18 391-408 141-158 (549)
253 PTZ00315 2'-phosphotransferase 39.5 47 0.001 35.5 5.0 55 53-107 403-461 (582)
254 KOG3172|consensus 38.9 29 0.00063 28.2 2.6 16 338-353 59-74 (119)
255 KOG0921|consensus 38.4 22 0.00049 39.7 2.5 14 54-67 652-665 (1282)
256 PRK10629 EnvZ/OmpR regulon mod 37.0 1.8E+02 0.0038 24.7 7.2 58 273-335 33-93 (127)
257 COG4907 Predicted membrane pro 35.8 28 0.00061 35.8 2.5 6 65-70 29-34 (595)
258 PF04847 Calcipressin: Calcipr 35.3 67 0.0015 29.1 4.7 45 132-190 8-52 (184)
259 KOG3293|consensus 34.5 30 0.00066 28.9 2.1 14 311-324 60-73 (134)
260 PF12300 DUF3628: Protein of u 32.2 62 0.0013 28.4 3.7 6 364-369 45-50 (180)
261 PF12993 DUF3877: Domain of un 31.2 1.9E+02 0.0041 25.9 6.6 104 55-178 29-143 (175)
262 PF03439 Spt5-NGN: Early trans 31.1 84 0.0018 24.4 4.1 34 149-191 33-66 (84)
263 PF13865 FoP_duplication: C-te 30.7 58 0.0012 24.8 3.0 10 393-402 24-33 (74)
264 KOG4410|consensus 28.0 1.4E+02 0.0031 28.9 5.6 50 273-325 328-377 (396)
265 PF15513 DUF4651: Domain of un 27.1 1.3E+02 0.0029 22.2 4.2 22 133-158 8-29 (62)
266 PRK10590 ATP-dependent RNA hel 26.2 52 0.0011 34.0 2.7 20 18-37 83-102 (456)
267 KOG0804|consensus 24.6 2.2E+02 0.0047 29.5 6.5 64 275-343 74-141 (493)
268 PF02714 DUF221: Domain of unk 24.1 40 0.00086 33.0 1.4 46 318-368 1-46 (325)
269 KOG2945|consensus 21.3 74 0.0016 32.0 2.6 31 379-409 325-355 (365)
270 TIGR03636 L23_arch archaeal ri 20.9 3.2E+02 0.0069 21.0 5.5 60 121-189 15-74 (77)
271 KOG1751|consensus 20.8 2.8E+02 0.0062 24.4 5.8 56 275-332 95-151 (157)
272 PRK05738 rplW 50S ribosomal pr 20.8 2.3E+02 0.005 22.5 4.9 18 283-300 27-45 (92)
273 KOG4008|consensus 20.7 76 0.0017 29.9 2.3 35 117-155 38-72 (261)
No 1
>KOG4213|consensus
Probab=100.00 E-value=3.2e-33 Score=241.25 Aligned_cols=168 Identities=44% Similarity=0.683 Sum_probs=151.4
Q ss_pred CccchhHHHHHHHHHHHHHhCCCCCCCChhHHhhh-ccCCCeEehHHHHhhHHHHhccCcHHHHHHHHhhcCCceEEEec
Q psy5142 15 AEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEI-KKDDGWVELTTMLKFARLAKMTTEAKVIVDALKKSTSKLIEVNE 93 (410)
Q Consensus 15 ~~~~~~~~~~~i~~QlEfYfsd~Nl~~D~fl~~~~-~~~~g~v~l~~l~~F~r~k~l~~d~~~i~~Al~~~~S~~levse 93 (410)
+...++++.++|+.||||||+|.||++|+||+++| ..++|||||.++++|||+..|++|..+|+.||+.|.+.++++|+
T Consensus 6 ~~~~~a~lE~kii~qleyy~Gd~nl~rdkfl~eqi~k~~~gwvpi~i~i~FnRla~lttD~~~Iv~al~ksk~~l~eise 85 (205)
T KOG4213|consen 6 DAVKMAALEAKIIHQLEYYFGDLNLPRDKFLREQIHKLDDGWVPIEIMIKFNRLASLTTDFNVIVEALSKSKAELMEISE 85 (205)
T ss_pred cccchhHHHHhhhhhhhhhhcccCchHHHHHHHHhhhhccCCccchhhhhhhhhhhccccHHHHHHHHhhCHHhhhhhhh
Confidence 33448999999999999999999999999999999 55789999999999999999999999999999999999999999
Q ss_pred CccceecCCCCCCCCCchhhhhhccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEE
Q psy5142 94 DGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIF 173 (410)
Q Consensus 94 d~~~vrR~~~~p~p~~~~~~~~~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~af 173 (410)
|++++||.++.|+|+.+++++.....|++|.+ |.+...++|..|-+ |.+.+|.|++...+. ..++|..|
T Consensus 86 dk~k~rr~~skplpEvt~e~~~~~~~r~v~~K--~td~ql~~l~qw~~------~k~~nv~mr~~~~k~---~~fkGsvk 154 (205)
T KOG4213|consen 86 DKTKIRRSPSKPLPEVTDEYKEGIKERTVYKK--ITDDQLDDLNQWAS------GKGHNVKMRRHGNKA---HPFKGSVK 154 (205)
T ss_pred chhhhhcCcCCCCccccHHHHHHHHHhhhhcc--CCHHHHHHHHHHhc------ccceEeeccccCCCC---CCCCCceE
Confidence 99999999999999999999999999999999 66667777777665 688899999887663 36999999
Q ss_pred EEecCHHHHHHHHHhcCCCCccc
Q psy5142 174 VTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 174 VeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
|+|.+.++|..+++... ..+
T Consensus 155 v~f~tk~qa~a~~~~~e---~~~ 174 (205)
T KOG4213|consen 155 VTFQTKEQAFANDDTHE---EKG 174 (205)
T ss_pred EEeecHHHHHhhhhhhh---hhc
Confidence 99999999999888766 455
No 2
>KOG1855|consensus
Probab=99.98 E-value=1.3e-32 Score=265.58 Aligned_cols=163 Identities=28% Similarity=0.503 Sum_probs=146.5
Q ss_pred cchhHHHHHHHHHHHHHhCCCCCCCChhHHhhhccC-CCeEehHHHHhhHHHHhccCcHHHHHHHHhhcCCceEEEecCc
Q psy5142 17 AEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKD-DGWVELTTMLKFARLAKMTTEAKVIVDALKKSTSKLIEVNEDG 95 (410)
Q Consensus 17 ~~~~~~~~~i~~QlEfYfsd~Nl~~D~fl~~~~~~~-~g~v~l~~l~~F~r~k~l~~d~~~i~~Al~~~~S~~levsed~ 95 (410)
..-+++.++|++||||||||.||.+|.||+++|.+| +|||||++|++|+|||+||.|+.+|+.||+ .|..|+||+|+
T Consensus 135 ~lsedl~~kIv~QVEyyFSDenL~~d~fLlkhvrrnkeGyVpv~~vaSFKKvK~LTrd~~~va~ALr--~S~kL~vseDg 212 (484)
T KOG1855|consen 135 ILSEDLAAKIVDQVEYYFSDENLLKDAFLLKHVRRNKEGYVPVKLVASFKKVKALTRDWKLVADALR--KSSKLEVSEDG 212 (484)
T ss_pred cccHHHHHHHHHHhheeeccccccchHHHHHHHhcCCCCceeeehhhhHHHHHHHhhhhHHHHHHHh--hcceEEEccCC
Confidence 346789999999999999999999999999999998 699999999999999999999999999999 88999999999
Q ss_pred cceecCCCCCCCCCchhhhhhccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEccc---Ccc------ccccc
Q psy5142 96 TKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNY---QDK------LANQK 166 (410)
Q Consensus 96 ~~vrR~~~~p~p~~~~~~~~~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~---~~~------~~~~~ 166 (410)
++|||. .|+|++++ .+...|||.+.|||.+-..+.|.++|+.+ |.|.+|+|.+. +.. ++.+.
T Consensus 213 kKVrRi--sPlp~~~~---eel~srtivaenLP~Dh~~enl~kiFg~~----G~IksIRIckPgaip~d~r~~~~~~~~~ 283 (484)
T KOG1855|consen 213 KKVRRI--SPLPEFDE---EELPSRTIVAENLPLDHSYENLSKIFGTV----GSIKSIRICKPGAIPEDVRGFPKKYFEL 283 (484)
T ss_pred ceeeec--CCCCCccc---cccccceEEEecCCcchHHHHHHHHhhcc----cceeeeeecCCCCCCcccccCCccchhh
Confidence 999999 58998865 35889999999999998889999999999 99999999876 211 11223
Q ss_pred ccccEEEEEecCHHHHHHHHHhcC
Q psy5142 167 KFKGSIFVTFDNKENAEKFLNENK 190 (410)
Q Consensus 167 ~~kG~afVeF~~~e~A~~Al~~~~ 190 (410)
..+-+|+|+|+..+.|.+|.+.++
T Consensus 284 ~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 284 QTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred hhhhhhhhhhhhhHHHHHHHHhhc
Confidence 347899999999999999999986
No 3
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=99.96 E-value=2.5e-30 Score=200.60 Aligned_cols=79 Identities=39% Similarity=0.821 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCChhHHhhhcc-CCCeEehHHHHhhHHHHhccCcHHHHHHHHhhcCCceEEEecCccce
Q psy5142 20 SKLENQIIEQIEYYFSDINLARDKFLQGEIKK-DDGWVELTTMLKFARLAKMTTEAKVIVDALKKSTSKLIEVNEDGTKI 98 (410)
Q Consensus 20 ~~~~~~i~~QlEfYfsd~Nl~~D~fl~~~~~~-~~g~v~l~~l~~F~r~k~l~~d~~~i~~Al~~~~S~~levsed~~~v 98 (410)
.+++++|++||||||||+||++|+||+++|.+ .+|||||++|++|+|||+|+.|.+.|++||+ .|+.|||++|+++|
T Consensus 3 ~~l~~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F~rmk~lt~d~~~i~~Al~--~S~~lev~ed~~~V 80 (82)
T cd08032 3 KQLLADIAKQVDFWFGDVNLHKDRFLREQIEKSRDGYIDISLLVSFNKMKKLTTDGKLIARALK--NSSVVELNLEGTRI 80 (82)
T ss_pred HHHHHHHHHHHHhhcchhhcccCHHHHHHhcCCCCCCEeHHHHhcchHHHHHcCCHHHHHHHHh--cCCEEEEcCCCCcc
Confidence 57899999999999999999999999999997 4799999999999999999999999999999 88999999999999
Q ss_pred ec
Q psy5142 99 RR 100 (410)
Q Consensus 99 rR 100 (410)
||
T Consensus 81 RR 82 (82)
T cd08032 81 RR 82 (82)
T ss_pred CC
Confidence 98
No 4
>cd08028 LARP_3 La RNA-binding domain of La-related protein 3. This domain is found at the N-terminus of the La autoantigen and similar proteins, and co-occurs with an RNA-recognition motif (RRM). Together these domains function to bind primary transcripts of RNA polymerase III at their 3' terminus and protect them from exonucleolytic degradation. Binding is specific for the 3'-terminal UUU-OH motif. The La autoantigen is also called Lupus La protein, LARP3, or Sjoegren syndrome type B antigen (SS-B).
Probab=99.96 E-value=3e-30 Score=200.61 Aligned_cols=82 Identities=61% Similarity=0.980 Sum_probs=77.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCCChhHHhhhccCCCeEehHHHHhhHHHHhccCcHHHHHHHHhhcCCceEEEecCccce
Q psy5142 19 VSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDALKKSTSKLIEVNEDGTKI 98 (410)
Q Consensus 19 ~~~~~~~i~~QlEfYfsd~Nl~~D~fl~~~~~~~~g~v~l~~l~~F~r~k~l~~d~~~i~~Al~~~~S~~levsed~~~v 98 (410)
++++..+|++||||||||+||++|+||+++|..++|||||++|++|+|||+|+.|.+.|++||+.|++.+|||++|+++|
T Consensus 1 ~~~l~~~I~~QvEfYFSd~NL~~D~fLr~~m~~~~G~Vpl~~i~~F~rmk~l~~d~~~i~~Al~~S~~~~lev~~d~~~V 80 (82)
T cd08028 1 MDDLEKKIIRQIEYYFGDFNLPRDKFLKEQIKEDDGWVPMEVMLKFNRLKSLSSDPEVIAKALKKSKSGLIEVSEDKTKI 80 (82)
T ss_pred ChHHHHHHHHHHHhhcCHhhhccCHHHHHHHhccCCCEEhHHHhCChhHHHhcCCHHHHHHHHHhCCCCEEEEcCCCCcc
Confidence 57899999999999999999999999999999778999999999999999999999999999995444499999999999
Q ss_pred ec
Q psy5142 99 RR 100 (410)
Q Consensus 99 rR 100 (410)
||
T Consensus 81 RR 82 (82)
T cd08028 81 RR 82 (82)
T ss_pred CC
Confidence 98
No 5
>cd08033 LARP_6 La RNA-binding domain of La-related protein 6. This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.96 E-value=5.9e-30 Score=196.59 Aligned_cols=75 Identities=37% Similarity=0.744 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHhhhccC-CCeEehHHHHhhHHHHhccCcHHHHHHHHhhcCCceEEEecCccceec
Q psy5142 24 NQIIEQIEYYFSDINLARDKFLQGEIKKD-DGWVELTTMLKFARLAKMTTEAKVIVDALKKSTSKLIEVNEDGTKIRR 100 (410)
Q Consensus 24 ~~i~~QlEfYfsd~Nl~~D~fl~~~~~~~-~g~v~l~~l~~F~r~k~l~~d~~~i~~Al~~~~S~~levsed~~~vrR 100 (410)
++|++||||||||+||++|+||+++|..+ +|||||++|++|+|||+|+.|.+.|++||+ .|+.|||++|+++|||
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F~rmk~l~~d~~~I~~Al~--~S~~lev~~d~~~VRR 77 (77)
T cd08033 2 QKIVKQVEYYFSDENLLKDAFLLKHVRRNKEGYVPIKLIASFKKVKALTRDWRVVAAALR--RSSKLVVSEDGKKVRR 77 (77)
T ss_pred hHHHhHHHhhcCHhhhccCHHHHHHhccCCCCcEehHHHhcchHHHHHcCCHHHHHHHHH--hCCeEEEcCCCCccCC
Confidence 68999999999999999999999999875 799999999999999999999999999999 8889999999999998
No 6
>smart00715 LA Domain in the RNA-binding Lupus La protein; unknown function.
Probab=99.96 E-value=1.6e-29 Score=196.41 Aligned_cols=80 Identities=48% Similarity=0.845 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCChhHHhhhccCCCeEehHHHHhhHHHHhccCcHHHHHHHHhhcCCceEEEecCcccee
Q psy5142 20 SKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDALKKSTSKLIEVNEDGTKIR 99 (410)
Q Consensus 20 ~~~~~~i~~QlEfYfsd~Nl~~D~fl~~~~~~~~g~v~l~~l~~F~r~k~l~~d~~~i~~Al~~~~S~~levsed~~~vr 99 (410)
+++.++|++||||||||+||++|.||+++|..++|||||++|++|+||++|+.|.+.|++||+ .|..|+|++|+++||
T Consensus 1 ~~~~~~i~~QvEfYFSd~NL~~D~fLr~~~~~~~g~Vpl~~i~~F~r~k~l~~d~~~i~~Al~--~S~~lel~~d~~~VR 78 (80)
T smart00715 1 EELKQKIKKQVEYYFSDENLPRDKFLRKKMDKNDGYVPISTIASFKRVKSLTTDVNLIVEALR--SSPKLEVSEDGLKVR 78 (80)
T ss_pred ChHHHHHHHHHHHHcCHhhhhhCHHHHHHhccCCCCEEhHHHhCchhHHHHcCCHHHHHHHHH--hCCeEEEcCCCCeeC
Confidence 368899999999999999999999999999997799999999999999999999999999999 889999999999999
Q ss_pred cC
Q psy5142 100 RN 101 (410)
Q Consensus 100 R~ 101 (410)
|.
T Consensus 79 R~ 80 (80)
T smart00715 79 RR 80 (80)
T ss_pred cC
Confidence 95
No 7
>cd08035 LARP_4 La RNA-binding domain of La-related protein 4. This domain is found in vertebrate La-related protein 4 (LARP4), also known as c-MPL binding protein. La-type domains often co-occur with RNA-recognition motifs (RRMs). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.96 E-value=3.4e-29 Score=189.74 Aligned_cols=74 Identities=31% Similarity=0.596 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHhhhccCCCeEehHHHHhhHHHHhccCcHHHHHHHHhhcCCceEEEecCccceec
Q psy5142 24 NQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDALKKSTSKLIEVNEDGTKIRR 100 (410)
Q Consensus 24 ~~i~~QlEfYfsd~Nl~~D~fl~~~~~~~~g~v~l~~l~~F~r~k~l~~d~~~i~~Al~~~~S~~levsed~~~vrR 100 (410)
++|++||||||||+||++|.||+++|+. +|||||++|++|+||++||.|++.|++||+ .|..|+||+||++||.
T Consensus 2 e~i~~QvEyYFSd~NL~~D~fL~~~md~-~G~Vpi~~iasF~rik~lt~d~~~I~~AL~--~S~~levsedg~kVRp 75 (75)
T cd08035 2 ECLKKQLEFCFSRENLSKDLYLISQMDS-DQFVPIWTVANMEGIKKLTTDMDLILDVLR--SSPMVQVDETGEKVRP 75 (75)
T ss_pred hHHHhhHHhhcCHhhcccCHHHHHhhCc-CCCEehHHHhccHHHHHhcCCHHHHHHHHH--cCCeEEEcCCCCccCc
Confidence 5899999999999999999999999976 599999999999999999999999999999 8899999999999983
No 8
>cd08036 LARP_5 La RNA-binding domain of La-related protein 5. This domain is found in vertebrate La-related protein 5 (LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.95 E-value=2.4e-29 Score=188.84 Aligned_cols=74 Identities=30% Similarity=0.578 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHhhhccCCCeEehHHHHhhHHHHhccCcHHHHHHHHhhcCCceEEEecCccceec
Q psy5142 24 NQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDALKKSTSKLIEVNEDGTKIRR 100 (410)
Q Consensus 24 ~~i~~QlEfYfsd~Nl~~D~fl~~~~~~~~g~v~l~~l~~F~r~k~l~~d~~~i~~Al~~~~S~~levsed~~~vrR 100 (410)
+.|++||||||||+||++|.||+++|+. +|||||++|++|+|||+||+|.+.|++||+ .|..|+||++|++||.
T Consensus 2 e~i~kQvEyYFS~~NL~~D~fLr~~md~-~g~Vpi~~ia~F~rik~Lt~D~~lI~~aL~--~S~~vevse~g~kVRp 75 (75)
T cd08036 2 ELLKKTLEFCLSRENLASDMYLISQMDS-DQYVPIMTVANLDHIKKLSTDVDLIVDVLR--SLPLVQVDEKGEKVRP 75 (75)
T ss_pred hhhhcceeeeechhhccccHHHHHHhcc-CCCEehHHHhccHHHHHhcCCHHHHHHHHh--hCCeEEECCCCCccCc
Confidence 5799999999999999999999999986 599999999999999999999999999999 7899999999999983
No 9
>cd08029 LA_like_fungal La-motif domain of fungal proteins similar to the La autoantigen. This domain is found in fungal proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.95 E-value=8e-29 Score=190.25 Aligned_cols=74 Identities=42% Similarity=0.779 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHhhhcc-CCCeEehHHHHhhHHHHhccCcHHHHHHHHhhcCCceEEEecCccceec
Q psy5142 24 NQIIEQIEYYFSDINLARDKFLQGEIKK-DDGWVELTTMLKFARLAKMTTEAKVIVDALKKSTSKLIEVNEDGTKIRR 100 (410)
Q Consensus 24 ~~i~~QlEfYfsd~Nl~~D~fl~~~~~~-~~g~v~l~~l~~F~r~k~l~~d~~~i~~Al~~~~S~~levsed~~~vrR 100 (410)
++|++||||||||+||++|.||+++|.. .+|||||++|++|+|||+|+.+ +.|++||+ .|+.|+|++|+++|||
T Consensus 2 ~~I~~QvEfYFSd~NL~~D~fLr~~~~~~~~G~Vpl~~i~~F~rmk~l~~~-~~i~~Al~--~S~~lev~~d~~~VRR 76 (76)
T cd08029 2 EEIRKQVEFYFSDSNLPTDKFLWTLTGGSNNGWVPIKTIASFKRMRRFQPL-EAVVEALR--ESELLEVSEDGENVRR 76 (76)
T ss_pred hHHHhhHHhhcCHhhhccCHHHHHHhccCCCCcEehHHHhCchHHHHcCCH-HHHHHHHH--hCCeEEEeCCCCcccC
Confidence 5899999999999999999999999986 4799999999999999999976 99999999 8899999999999998
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.95 E-value=5.7e-27 Score=231.77 Aligned_cols=161 Identities=16% Similarity=0.280 Sum_probs=134.7
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||++||+++|+++|+++|+.| |.|.+|+|+++..++ +++|||||+|.++++|++|++.+++ ..+
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~----G~V~~v~i~~d~~tg----~srGyaFVeF~~~e~A~~Ai~~LnG--~~l 174 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTI----GPINTCRIMRDYKTG----YSFGYAFVDFGSEADSQRAIKNLNG--ITV 174 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEecCCCC----ccCcEEEEEEccHHHHHHHHHHcCC--Ccc
Confidence 457899999999999999999999999 999999999987765 8899999999999999999999986 445
Q ss_pred cccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCCe
Q psy5142 197 NENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGA 276 (410)
Q Consensus 197 ~~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g~ 276 (410)
.+ +.|.|.+.... ......+
T Consensus 175 -----------------------~g---r~i~V~~a~p~----------------------------------~~~~~~~ 194 (346)
T TIGR01659 175 -----------------------RN---KRLKVSYARPG----------------------------------GESIKDT 194 (346)
T ss_pred -----------------------CC---ceeeeeccccc----------------------------------ccccccc
Confidence 55 77777642110 0012245
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCeEEcC--eEEE
Q psy5142 277 LLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE------PTAFVRYKKENNAEAVLKALGSKEIVIKD--VKVS 348 (410)
Q Consensus 277 ~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~~i~g--~~v~ 348 (410)
.|||.|||..+++++|+++|++|| .|..|.+.++. .+|||+|.+.++|++||+.|+ +..+.+ +.|+
T Consensus 195 ~lfV~nLp~~vtee~L~~~F~~fG----~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln--g~~~~g~~~~l~ 268 (346)
T TIGR01659 195 NLYVTNLPRTITDDQLDTIFGKYG----QIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALN--NVIPEGGSQPLT 268 (346)
T ss_pred eeEEeCCCCcccHHHHHHHHHhcC----CEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhC--CCccCCCceeEE
Confidence 799999999999999999999999 99999888653 479999999999999999994 555554 6888
Q ss_pred EEecC
Q psy5142 349 IEVVT 353 (410)
Q Consensus 349 v~~l~ 353 (410)
|.+.+
T Consensus 269 V~~a~ 273 (346)
T TIGR01659 269 VRLAE 273 (346)
T ss_pred EEECC
Confidence 88766
No 11
>cd08031 LARP_4_5_like La RNA-binding domain of proteins similar to La-related proteins 4 and 5. This domain is found in proteins similar to La-related proteins 4 and 5 (LARP4, LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.95 E-value=2.3e-28 Score=186.83 Aligned_cols=74 Identities=38% Similarity=0.672 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHhhhccCCCeEehHHHHhhHHHHhccCcHHHHHHHHhhcCCceEEEecCccceec
Q psy5142 24 NQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDALKKSTSKLIEVNEDGTKIRR 100 (410)
Q Consensus 24 ~~i~~QlEfYfsd~Nl~~D~fl~~~~~~~~g~v~l~~l~~F~r~k~l~~d~~~i~~Al~~~~S~~levsed~~~vrR 100 (410)
++|++||||||||+||++|.||+++|.. +|||||++|++|+||++|+.|.+.|++||+ .|+.|+|++|+++||.
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~m~~-dG~Vpl~~i~~F~rmk~lt~d~~~i~~Al~--~S~~lev~ed~~~VR~ 75 (75)
T cd08031 2 ELLKRQLEYYFSRENLANDAYLLSQMDS-DQYVPIWTIANFNKIKKLTTDIDLIVEALR--ESPNVQVDEKGEKVRP 75 (75)
T ss_pred hHHHHHHHHHcCHhhhccCHHHHHHhCC-CCCEEHHHHhCchhHHHHcCCHHHHHHHHH--hCCeEEEcCCCCccCc
Confidence 5899999999999999999999999986 599999999999999999999999999999 8889999999999983
No 12
>cd08030 LA_like_plant La-motif domain of plant proteins similar to the La autoantigen. This domain is found in plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.95 E-value=3.9e-28 Score=191.18 Aligned_cols=76 Identities=41% Similarity=0.777 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhCCCCCCCChhHHhhhccC-CCeEehHHHHhhHHHHhccC------------cHHHHHHHHhhcCCceE
Q psy5142 23 ENQIIEQIEYYFSDINLARDKFLQGEIKKD-DGWVELTTMLKFARLAKMTT------------EAKVIVDALKKSTSKLI 89 (410)
Q Consensus 23 ~~~i~~QlEfYfsd~Nl~~D~fl~~~~~~~-~g~v~l~~l~~F~r~k~l~~------------d~~~i~~Al~~~~S~~l 89 (410)
.++|++||||||||+||++|+||+++|..+ +|||||++|++|+|||+|+. +.+.|++||+ .|..|
T Consensus 2 ~~~i~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~V~i~~i~~F~rmk~l~~~~~~~~~~~~~~~~~~I~~ALk--~S~~l 79 (90)
T cd08030 2 KEKVLRQVEFYFSDSNLPRDDFLLEEVEEDPDGMVSLALICSFSRMRSLLGLGGGKPEDVPEDTLKAVAEALR--TSTLL 79 (90)
T ss_pred hHHHHHHHHcccchhhcccCHHHHHHhccCCCCCEehHHHhcChHHHHHhhcccccccccchhHHHHHHHHHc--cCCEE
Confidence 578999999999999999999999999875 79999999999999999985 3689999999 88899
Q ss_pred EEecCccceec
Q psy5142 90 EVNEDGTKIRR 100 (410)
Q Consensus 90 evsed~~~vrR 100 (410)
+|++|+++|||
T Consensus 80 evseD~~~VRR 90 (90)
T cd08030 80 KVSEDGKRVGR 90 (90)
T ss_pred EEcCCCCccCC
Confidence 99999999998
No 13
>cd08037 LARP_1 La RNA-binding domain of La-related protein 1. This domain is found in vertebrate La-related protein 1 (LARP1). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.94 E-value=1.9e-27 Score=179.73 Aligned_cols=72 Identities=43% Similarity=0.693 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHhhhccCCCeEehHHHHhhHHHHhccCcHHHHHHHHhhcCCceEEEecCccceec
Q psy5142 24 NQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDALKKSTSKLIEVNEDGTKIRR 100 (410)
Q Consensus 24 ~~i~~QlEfYfsd~Nl~~D~fl~~~~~~~~g~v~l~~l~~F~r~k~l~~d~~~i~~Al~~~~S~~levsed~~~vrR 100 (410)
++|++||||||||+||++|.||+++|.. +|||||++|++|+||++|+.|.+.|++||+ .|+.|||+++. |||
T Consensus 2 ~~I~~QvEyYFSd~NL~~D~fLr~~md~-dG~Vpi~~ia~F~rmk~Lt~d~~~I~~Al~--~S~~vev~~~~--~r~ 73 (73)
T cd08037 2 DYIKRQIEYYFSVDNLERDFFLRRKMDE-DGFLPVTLIASFHRVQALTTDISLIIKALK--DSKVVEIIDMK--IRR 73 (73)
T ss_pred hHHHHHHHHhccHhhhccCHHHHHHhcc-CCCEeHHHHhcchHHHHhcCCHHHHHHHHH--cCCeEEEecch--hcC
Confidence 5899999999999999999999999976 599999999999999999999999999999 89999999874 554
No 14
>cd08038 LARP_2 La RNA-binding domain of La-related protein 2. This domain is found in vertebrate La-related protein 2 (LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.94 E-value=3e-27 Score=178.67 Aligned_cols=72 Identities=39% Similarity=0.648 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHhhhccCCCeEehHHHHhhHHHHhccCcHHHHHHHHhhcCCceEEEecCccceec
Q psy5142 24 NQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDALKKSTSKLIEVNEDGTKIRR 100 (410)
Q Consensus 24 ~~i~~QlEfYfsd~Nl~~D~fl~~~~~~~~g~v~l~~l~~F~r~k~l~~d~~~i~~Al~~~~S~~levsed~~~vrR 100 (410)
++|++||||||||+||++|.||+++|.. +|||||++|++|+||++|+.|.+.|++||+ .|..|||++++ |||
T Consensus 2 e~I~~QvEfYFSd~NL~~D~fLr~~m~~-~G~Vpl~~ia~F~rmk~lt~d~~~I~~Al~--~S~~ve~~~~~--~r~ 73 (73)
T cd08038 2 EYIKRQIEYYFSTENLERDFFLRRKMDL-QGFLPISLIAGFYRVQALTTNVDLILEALK--DSTEVEIVDQK--IRR 73 (73)
T ss_pred hHHHhhHHhhcchhhhccCHHHHHHhCC-CCCEeHHHHhcchHHHHhcCCHHHHHHHHH--cCCeEEEeCCc--ccC
Confidence 5899999999999999999999999976 599999999999999999999999999999 89999999885 554
No 15
>cd08034 LARP_1_2 La RNA-binding domain proteins similar to La-related proteins 1 and 2. This domain is found in proteins similar to vertebrate La-related proteins 1 and 2 (LARP1, LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.94 E-value=4e-27 Score=178.84 Aligned_cols=72 Identities=36% Similarity=0.654 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHhhhccCCCeEehHHHHhhHHHHhccCcHHHHHHHHhhcCCceEEEecCccceec
Q psy5142 24 NQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDALKKSTSKLIEVNEDGTKIRR 100 (410)
Q Consensus 24 ~~i~~QlEfYfsd~Nl~~D~fl~~~~~~~~g~v~l~~l~~F~r~k~l~~d~~~i~~Al~~~~S~~levsed~~~vrR 100 (410)
++|++||||||||+||++|.||+++|.. +|||||++|++|+||++|+.|.+.|++||+ .|+.|+|++ .+|||
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fLr~~m~~-~G~Vpl~~i~~F~rmk~l~~d~~~i~~Al~--~S~~lev~e--~kvR~ 73 (73)
T cd08034 2 EYIKKQIEYYFSVDNLEKDFFLRRKMDP-EGYLPIALIASFHRVQALTTDVNLILEALK--DSTVVELVD--EKVRC 73 (73)
T ss_pred hHHHhhHHhhcCHhhhccCHHHHHHcCC-CCCEeHHHHhccHHHHHHcCCHHHHHHHHH--cCCeEEEec--CeecC
Confidence 6899999999999999999999999975 599999999999999999999999999999 899999999 56775
No 16
>cd07323 LAM LA motif RNA-binding domain. This domain is found at the N-terminus of La RNA-binding proteins as well as in other related proteins. Typically, the domain co-occurs with an RNA-recognition motif (RRM), and together these domains function to bind primary transcripts of RNA polymerase III in the La autoantigen (Lupus La protein, LARP3, or Sjoegren syndrome type B antigen, SS-B). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.93 E-value=7.9e-27 Score=179.59 Aligned_cols=74 Identities=50% Similarity=0.934 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHhhhccCCCeEehHHHHhhHHHHhccCcHHHHHHHHhhcCCceEEEecCccceec
Q psy5142 24 NQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDALKKSTSKLIEVNEDGTKIRR 100 (410)
Q Consensus 24 ~~i~~QlEfYfsd~Nl~~D~fl~~~~~~~~g~v~l~~l~~F~r~k~l~~d~~~i~~Al~~~~S~~levsed~~~vrR 100 (410)
++|++||||||||+||++|.||+++| .++|||||++|++|+||++|+.|.+.|++||+ .|..|+|++++++|||
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~~-~~~g~Vpl~~i~~F~r~k~l~~~~~~i~~Al~--~s~~lel~~~~~~Vrr 75 (75)
T cd07323 2 EKIKKQVEYYFSDENLCKDRFLRSLM-DDDGWVPLSLLASFNRVKKLTTDVELILEALR--DSSVVEVSEDGTKVRR 75 (75)
T ss_pred hHHHhhhHhccCHhhhCcCHHHHHhc-CCCCCEEHHHHhCchHHHHHcCCHHHHHHHHH--hCCeEEEeCCCCccCC
Confidence 57999999999999999999999999 44699999999999999999999999999999 7889999999999997
No 17
>KOG0117|consensus
Probab=99.91 E-value=5.8e-23 Score=199.79 Aligned_cols=266 Identities=15% Similarity=0.181 Sum_probs=173.6
Q ss_pred HHHHHHHhhcCCceEEEecCccceecCCCCCCCCCchhhhhhccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEE
Q psy5142 75 KVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNII 154 (410)
Q Consensus 75 ~~i~~Al~~~~S~~levsed~~~vrR~~~~p~p~~~~~~~~~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~ 154 (410)
+..+.||-.-+-..|+|... .|+-..|.|.++ ......-+-|||+.||.++.+++|.-+|++. |+|-.+|
T Consensus 45 eaal~al~E~tgy~l~ve~g----qrk~ggPpP~we--g~~p~~G~EVfvGkIPrD~~EdeLvplfEki----G~I~elR 114 (506)
T KOG0117|consen 45 EAALKALLERTGYTLVVENG----QRKYGGPPPGWE--GPPPPRGCEVFVGKIPRDVFEDELVPLFEKI----GKIYELR 114 (506)
T ss_pred HHHHHHHHHhcCceEEEecc----ccccCCCCCccc--CCCCCCCceEEecCCCccccchhhHHHHHhc----cceeeEE
Confidence 44445555435556777654 344334666653 2233556789999999999999999999999 9999999
Q ss_pred EcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcc---ccccccchhhhhhh--hcccccc---------cccC
Q psy5142 155 MRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLK---FNENCEHKNAEKFL--NENKDKN---------LKFN 220 (410)
Q Consensus 155 l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~---~~~~~~~~~~~k~~--~~~~~~~---------~~~~ 220 (410)
|..++.++ .++|||||+|.+.++|+.|++.+|+..+. +-+-|.+..--.|+ +.++.+. -...
T Consensus 115 LMmD~~sG----~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVte 190 (506)
T KOG0117|consen 115 LMMDPFSG----DNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTE 190 (506)
T ss_pred EeecccCC----CCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhCC
Confidence 99998776 89999999999999999999999963221 11112221111111 0111110 0001
Q ss_pred cccccchhhhc------h------HHHHHHHHHHHHhhhhccccCccCCC---CCCCCC-CcccccCCCCCeEEEEeCCC
Q psy5142 221 ENCEHSLLIKW------Q------QEYHEEKKQEVRSKRDKSKKSTEGDG---EGNTEG-SKQVVLELPTGALLKISDIK 284 (410)
Q Consensus 221 g~~~~~L~v~~------k------~~~~~~k~~e~~~~~~k~k~~~e~~~---~~~~~~-~~~~~~~~~~g~~l~v~nL~ 284 (410)
|. ..+++-. + .+|...+.+.+...+--.-.=+-+.. .++++. ++.....+..-.+|||+||+
T Consensus 191 GV--vdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~ 268 (506)
T KOG0117|consen 191 GV--VDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLM 268 (506)
T ss_pred Ce--eEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccc
Confidence 10 0000000 0 02333333333322110000000000 011111 12223355666799999999
Q ss_pred CCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEecCchHHHHHHHHh
Q psy5142 285 EPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVTGEEEQTVLDRM 364 (410)
Q Consensus 285 ~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l~g~eE~~yw~k~ 364 (410)
.+||+|.|+++|++|| .|..|..++ ++|||+|.+.++|.+|++.+ ++.+|+|..|.|.++..-.++.+|.+.
T Consensus 269 ~~tTeE~lk~~F~~~G----~veRVkk~r--DYaFVHf~eR~davkAm~~~--ngkeldG~~iEvtLAKP~~k~k~~r~~ 340 (506)
T KOG0117|consen 269 ESTTEETLKKLFNEFG----KVERVKKPR--DYAFVHFAEREDAVKAMKET--NGKELDGSPIEVTLAKPVDKKKKERKA 340 (506)
T ss_pred hhhhHHHHHHHHHhcc----ceEEeeccc--ceeEEeecchHHHHHHHHHh--cCceecCceEEEEecCChhhhccchhh
Confidence 9999999999999999 999998886 59999999999999999999 789999999999999999999999753
No 18
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.90 E-value=1.2e-22 Score=211.13 Aligned_cols=228 Identities=14% Similarity=0.186 Sum_probs=145.9
Q ss_pred CCCCCCchhhhhhccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHH
Q psy5142 104 KELPTFDIDFVKDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAE 183 (410)
Q Consensus 104 ~p~p~~~~~~~~~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~ 183 (410)
.|.|.++ .......++|||+|||+++|+++|+++|++| |.|.+|+|+++..+ .++|||||+|.+.++|+
T Consensus 45 ~Pp~~~~--~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~----G~I~~vrl~~D~sG-----~sRGfaFV~F~~~e~A~ 113 (578)
T TIGR01648 45 GPPPGWS--GVQPGRGCEVFVGKIPRDLYEDELVPLFEKA----GPIYELRLMMDFSG-----QNRGYAFVTFCGKEEAK 113 (578)
T ss_pred CCCCccc--CCCCCCCCEEEeCCCCCCCCHHHHHHHHHhh----CCEEEEEEEECCCC-----CccceEEEEeCCHHHHH
Confidence 4666542 1122346899999999999999999999999 99999999999544 89999999999999999
Q ss_pred HHHHhcCCCCcccc-cccc----c--------------hhhhhhhhcccccccccCcccccchhhhc------h------
Q psy5142 184 KFLNENKDKNLKFN-ENCE----H--------------KNAEKFLNENKDKNLKFNENCEHSLLIKW------Q------ 232 (410)
Q Consensus 184 ~Al~~~~g~~~~~~-~~~~----~--------------~~~~k~~~~~~~~~~~~~g~~~~~L~v~~------k------ 232 (410)
+||+.+++. .+. .... . ...+.+..+-... ..+. ..+++.. +
T Consensus 114 ~Ai~~lng~--~i~~Gr~l~V~~S~~~~rLFVgNLP~~~TeeeL~eeFskv---~egv--v~vIv~~~~~~kgKnRGFAF 186 (578)
T TIGR01648 114 EAVKLLNNY--EIRPGRLLGVCISVDNCRLFVGGIPKNKKREEILEEFSKV---TEGV--VDVIVYHSAADKKKNRGFAF 186 (578)
T ss_pred HHHHHcCCC--eecCCccccccccccCceeEeecCCcchhhHHHHHHhhcc---cCCc--eEEEEeccccccCccCceEE
Confidence 999999862 221 1110 0 0111111100000 0000 0000000 0
Q ss_pred HHHHHHHHHHHHhhhhcc-c----c---CccCCCCCCCCCCcccccCCCCCeEEEEeCCCCCCCHHHHHHHHHhc--CCC
Q psy5142 233 QEYHEEKKQEVRSKRDKS-K----K---STEGDGEGNTEGSKQVVLELPTGALLKISDIKEPVSREDIREVLEKV--QTD 302 (410)
Q Consensus 233 ~~~~~~k~~e~~~~~~k~-k----~---~~e~~~~~~~~~~~~~~~~~~~g~~l~v~nL~~~~t~edLk~~F~~~--G~~ 302 (410)
..|.....+.+...+... + . ..+... ...........+..+|||.||++.+++++|+++|++| |
T Consensus 187 VeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~----p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G-- 260 (578)
T TIGR01648 187 VEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAE----PEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPG-- 260 (578)
T ss_pred EEcCCHHHHHHHHHHhhccceEecCceEEEEeec----ccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCC--
Confidence 012111111111110000 0 0 000000 0001111223445789999999999999999999999 9
Q ss_pred CCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEecCchHHHHHH
Q psy5142 303 DQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVTGEEEQTVL 361 (410)
Q Consensus 303 ~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l~g~eE~~yw 361 (410)
.|..|.+.+ ++|||+|.+.++|++|++.| ++..|+|+.|+|..........++
T Consensus 261 --~I~rV~~~r--gfAFVeF~s~e~A~kAi~~l--nG~~i~Gr~I~V~~Akp~~~~~~~ 313 (578)
T TIGR01648 261 --KVERVKKIR--DYAFVHFEDREDAVKAMDEL--NGKELEGSEIEVTLAKPVDKKSYV 313 (578)
T ss_pred --ceEEEEeec--CeEEEEeCCHHHHHHHHHHh--CCCEECCEEEEEEEccCCCccccc
Confidence 999998876 58999999999999999999 678999999999998776555444
No 19
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=99.89 E-value=4.1e-24 Score=157.75 Aligned_cols=57 Identities=51% Similarity=0.972 Sum_probs=52.6
Q ss_pred HHHHHHHHhCCCCCCCChhHHhhhccC-CCeEehHHHHhhHHHHhcc-CcHHHHHHHHh
Q psy5142 26 IIEQIEYYFSDINLARDKFLQGEIKKD-DGWVELTTMLKFARLAKMT-TEAKVIVDALK 82 (410)
Q Consensus 26 i~~QlEfYfsd~Nl~~D~fl~~~~~~~-~g~v~l~~l~~F~r~k~l~-~d~~~i~~Al~ 82 (410)
|++||||||||+||++|+||+++|..+ +|||||++|++|+|||+|+ .|.+.|++||+
T Consensus 1 I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpi~~i~~F~r~k~l~~~~~~~I~~al~ 59 (61)
T PF05383_consen 1 IKKQVEFYFSDENLPRDKFLRSQMDSNPDGWVPISTILSFNRMKALTNTDIELIVDALR 59 (61)
T ss_dssp HHHHHHHHTSHHHHCC-HHHHHHHCTTTTTBEEHHHHTTSHHHHHH--S-HHHHHHHHH
T ss_pred ChhHHHHhcCHHHhCcCHHHHHHHHhcCCCcEeHHHHHchHHHHHHhcCCHHHHHHHHH
Confidence 789999999999999999999999996 7999999999999999999 89999999999
No 20
>KOG2591|consensus
Probab=99.89 E-value=5.3e-23 Score=204.22 Aligned_cols=137 Identities=27% Similarity=0.511 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCCChhHHhhhccCCCeEehHHHHhhHHHHhccCcHHHHHHHHhhcCCceEEEecCccceec
Q psy5142 21 KLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDALKKSTSKLIEVNEDGTKIRR 100 (410)
Q Consensus 21 ~~~~~i~~QlEfYfsd~Nl~~D~fl~~~~~~~~g~v~l~~l~~F~r~k~l~~d~~~i~~Al~~~~S~~levsed~~~vrR 100 (410)
++.+-|++|||||||.+||..|.||..+|++| .||||-+++.|..|++|++|+++|+++|+ .|..|+|++++.+||-
T Consensus 95 ~~kq~lk~qlEy~fSreNlssD~YL~sQMDSD-qyVPI~tva~~~~i~klttDvdLI~Evlr--esp~VqvDekgekVrp 171 (684)
T KOG2591|consen 95 DLKQLLKKQLEYYFSRENLSSDRYLISQMDSD-QYVPINTVANFPEIMKLTTDVDLIVEVLR--ESPNVQVDEKGEKVRP 171 (684)
T ss_pred hHHHHHHHHHHHhhccccccchhhhhhhcccc-cccchhhhccchhhhhhccchHHHHHHHh--cCCCceeccCcccccc
Confidence 89999999999999999999999999999986 99999999999999999999999999999 8999999999999997
Q ss_pred CCCCCCCCCchhhhhhccceeeEeecCCCCCCHHHHHHHHhh--ccCCCCceEEEEEcccCcccccccccccEEEEEecC
Q psy5142 101 NPEKELPTFDIDFVKDLIAQSLYVKYIPVDATLDDIKDFFKK--NTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDN 178 (410)
Q Consensus 101 ~~~~p~p~~~~~~~~~~~~rtv~V~~lp~~~t~~~L~~~F~~--~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~ 178 (410)
. .+.|.|+++-||..+.+++|+.+|+. | -.+.++.. .....|||+|++
T Consensus 172 ~---------------~kRcIvilREIpettp~e~Vk~lf~~enc----Pk~iscef-----------a~N~nWyITfes 221 (684)
T KOG2591|consen 172 N---------------HKRCIVILREIPETTPIEVVKALFKGENC----PKVISCEF-----------AHNDNWYITFES 221 (684)
T ss_pred C---------------cceeEEEEeecCCCChHHHHHHHhccCCC----CCceeeee-----------eecCceEEEeec
Confidence 6 35688999999999999999999975 4 46666655 345569999999
Q ss_pred HHHHHHHHHhcC
Q psy5142 179 KENAEKFLNENK 190 (410)
Q Consensus 179 ~e~A~~Al~~~~ 190 (410)
.+||+.|.+.+.
T Consensus 222 d~DAQqAykylr 233 (684)
T KOG2591|consen 222 DTDAQQAYKYLR 233 (684)
T ss_pred chhHHHHHHHHH
Confidence 999999998775
No 21
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.89 E-value=3.3e-22 Score=208.27 Aligned_cols=171 Identities=18% Similarity=0.212 Sum_probs=138.1
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFN 197 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~ 197 (410)
..++|||+|||+++|+++|+++|++| |.|.+|+|+++..++ +++|||||+|.+.++|++|++.++| ..+
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~f----G~I~sV~I~~D~~Tg----kskGfAFVeF~s~e~A~~Ai~~lnG--~~i- 174 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPF----GPIKSINMSWDPATG----KHKGFAFVEYEVPEAAQLALEQMNG--QML- 174 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHcc----CCEEEEEEeecCCCC----CcCCeEEEEeCcHHHHHHHHHhcCC--eEE-
Confidence 45799999999999999999999999 999999999988776 8999999999999999999999986 455
Q ss_pred ccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCCeE
Q psy5142 198 ENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGAL 277 (410)
Q Consensus 198 ~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g~~ 277 (410)
.| +.|.|.+...+.. .... ...........+.
T Consensus 175 ----------------------~G---R~IkV~rp~~~p~------------a~~~-----------~~~~~~~~~~~~r 206 (612)
T TIGR01645 175 ----------------------GG---RNIKVGRPSNMPQ------------AQPI-----------IDMVQEEAKKFNR 206 (612)
T ss_pred ----------------------ec---ceeeecccccccc------------cccc-----------cccccccccccce
Confidence 66 7777653211100 0000 0000011223468
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEe
Q psy5142 278 LKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEV 351 (410)
Q Consensus 278 l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~ 351 (410)
|||.|||+++++++|+++|+.|| .|..|.+.++ +++|||+|.+.++|.+||..| +++.++|+.|+|..
T Consensus 207 LfVgnLp~~vteedLk~lFs~FG----~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~am--Ng~elgGr~LrV~k 280 (612)
T TIGR01645 207 IYVASVHPDLSETDIKSVFEAFG----EIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM--NLFDLGGQYLRVGK 280 (612)
T ss_pred EEeecCCCCCCHHHHHHHHhhcC----CeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHh--CCCeeCCeEEEEEe
Confidence 99999999999999999999999 9999988764 357999999999999999999 68999999999976
Q ss_pred cC
Q psy5142 352 VT 353 (410)
Q Consensus 352 l~ 353 (410)
..
T Consensus 281 Ai 282 (612)
T TIGR01645 281 CV 282 (612)
T ss_pred cC
Confidence 54
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.88 E-value=1.9e-21 Score=200.53 Aligned_cols=173 Identities=13% Similarity=0.263 Sum_probs=137.5
Q ss_pred hccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcc
Q psy5142 116 DLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLK 195 (410)
Q Consensus 116 ~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~ 195 (410)
+...+||||+|||..+|+++|+++|++| |.|..|+|+++..++ .++|||||+|.+.++|.+||.. +| ..
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~----G~v~~v~i~~d~~~~----~skg~afVeF~~~e~A~~Al~l-~g--~~ 154 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKV----GKVRDVQCIKDRNSR----RSKGVAYVEFYDVESVIKALAL-TG--QM 154 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEeecCCCC----CcceEEEEEECCHHHHHHHHHh-CC--CE
Confidence 4567999999999999999999999999 999999999987765 8999999999999999999985 43 45
Q ss_pred ccccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCC
Q psy5142 196 FNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTG 275 (410)
Q Consensus 196 ~~~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g 275 (410)
+ .| +.|.|........ .. ... ........+..
T Consensus 155 ~-----------------------~g---~~i~v~~~~~~~~-----~~--------~~~---------~~~~~~~~p~~ 186 (457)
T TIGR01622 155 L-----------------------LG---RPIIVQSSQAEKN-----RA--------AKA---------ATHQPGDIPNF 186 (457)
T ss_pred E-----------------------CC---eeeEEeecchhhh-----hh--------hhc---------ccccCCCCCCC
Confidence 5 55 6666653211000 00 000 00001112336
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEE
Q psy5142 276 ALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSI 349 (410)
Q Consensus 276 ~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v 349 (410)
++|||.|||..+++++|+++|++|| .|..|.+..+ .++|||.|.+.++|.+|+..| +++.|.|+.|.|
T Consensus 187 ~~l~v~nl~~~~te~~l~~~f~~~G----~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l--~g~~i~g~~i~v 260 (457)
T TIGR01622 187 LKLYVGNLHFNITEQELRQIFEPFG----DIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVM--NGFELAGRPIKV 260 (457)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHhcC----CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhc--CCcEECCEEEEE
Confidence 7899999999999999999999999 9999988843 356999999999999999999 679999999999
Q ss_pred EecC
Q psy5142 350 EVVT 353 (410)
Q Consensus 350 ~~l~ 353 (410)
....
T Consensus 261 ~~a~ 264 (457)
T TIGR01622 261 GYAQ 264 (457)
T ss_pred EEcc
Confidence 9865
No 23
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.87 E-value=5.8e-21 Score=190.26 Aligned_cols=232 Identities=11% Similarity=0.174 Sum_probs=148.9
Q ss_pred cHHHHHHHHhhcCCceEEEecCccceecCCCCCCCCCchhhhhhccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEE
Q psy5142 73 EAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITN 152 (410)
Q Consensus 73 d~~~i~~Al~~~~S~~levsed~~~vrR~~~~p~p~~~~~~~~~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~ 152 (410)
+.+....||. .-+...+.....+|... .|.. .....++|||+|||.++++++|+.+|++| |.|..
T Consensus 54 ~~~~A~~Ai~--~l~g~~l~g~~i~v~~a--~~~~-------~~~~~~~l~v~~l~~~~~~~~l~~~f~~~----G~i~~ 118 (352)
T TIGR01661 54 RPEDAEKAVN--SLNGLRLQNKTIKVSYA--RPSS-------DSIKGANLYVSGLPKTMTQHELESIFSPF----GQIIT 118 (352)
T ss_pred cHHHHHHHHh--hcccEEECCeeEEEEee--cccc-------cccccceEEECCccccCCHHHHHHHHhcc----CCEEE
Confidence 3566667776 33344444333344322 1211 12346789999999999999999999999 99999
Q ss_pred EEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccccccccchhhhhhhhcccccccccCcccccchhhhch
Q psy5142 153 IIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQ 232 (410)
Q Consensus 153 v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k 232 (410)
+.++.+..++ .++|||||+|.+.++|+.|++.++| ..+.+.. ..|.+.+.
T Consensus 119 ~~~~~~~~~~----~~~g~~fv~f~~~~~A~~ai~~l~g--~~~~g~~------------------------~~i~v~~a 168 (352)
T TIGR01661 119 SRILSDNVTG----LSKGVGFIRFDKRDEADRAIKTLNG--TTPSGCT------------------------EPITVKFA 168 (352)
T ss_pred EEEEecCCCC----CcCcEEEEEECCHHHHHHHHHHhCC--CccCCCc------------------------eeEEEEEC
Confidence 9998877654 7899999999999999999999997 3331110 11111110
Q ss_pred H--------HHHHHHHH----H-HH------------------hhh----hc------cccCccCC-CCC------CCC-
Q psy5142 233 Q--------EYHEEKKQ----E-VR------------------SKR----DK------SKKSTEGD-GEG------NTE- 263 (410)
Q Consensus 233 ~--------~~~~~k~~----e-~~------------------~~~----~k------~k~~~e~~-~~~------~~~- 263 (410)
. .+...... . .. ... .. ........ ..+ ...
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (352)
T TIGR01661 169 NNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPA 248 (352)
T ss_pred CCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCcc
Confidence 0 00000000 0 00 000 00 00000000 000 000
Q ss_pred -CC--------cccccCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHH
Q psy5142 264 -GS--------KQVVLELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNA 328 (410)
Q Consensus 264 -~~--------~~~~~~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A 328 (410)
.. .........+..|||.|||+++++++|+++|++|| .|..|.+..+ +++|||.|.+.++|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG----~v~~v~i~~d~~t~~skG~aFV~F~~~~~A 324 (352)
T TIGR01661 249 TDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFG----AVQNVKIIRDLTTNQCKGYGFVSMTNYDEA 324 (352)
T ss_pred ccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCC----CeEEEEEeEcCCCCCccceEEEEECCHHHH
Confidence 00 00001123456899999999999999999999999 9999998864 35799999999999
Q ss_pred HHHHHHhcCCCeEEcCeEEEEEecCch
Q psy5142 329 EAVLKALGSKEIVIKDVKVSIEVVTGE 355 (410)
Q Consensus 329 ~~Al~~l~~~~~~i~g~~v~v~~l~g~ 355 (410)
..|+..| +|..++|+.|+|...+..
T Consensus 325 ~~Ai~~l--nG~~~~gr~i~V~~~~~~ 349 (352)
T TIGR01661 325 AMAILSL--NGYTLGNRVLQVSFKTNK 349 (352)
T ss_pred HHHHHHh--CCCEECCeEEEEEEccCC
Confidence 9999999 689999999999987654
No 24
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.87 E-value=1.7e-21 Score=194.01 Aligned_cols=159 Identities=18% Similarity=0.333 Sum_probs=132.1
Q ss_pred ceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccccc
Q psy5142 119 AQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFNE 198 (410)
Q Consensus 119 ~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~~ 198 (410)
..+|||+|||.++|+++|+++|++| |+|.+|+|++++.++ +++|||||+|.+.++|++||+.++| ..+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~----G~i~~v~i~~d~~~g----~s~g~afV~f~~~~~A~~Ai~~l~g--~~l-- 70 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSI----GEIESCKLVRDKVTG----QSLGYGFVNYVRPEDAEKAVNSLNG--LRL-- 70 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHcc----CCEEEEEEEEcCCCC----ccceEEEEEECcHHHHHHHHhhccc--EEE--
Confidence 4799999999999999999999999 999999999987765 8999999999999999999999986 445
Q ss_pred cccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCCeEE
Q psy5142 199 NCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGALL 278 (410)
Q Consensus 199 ~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g~~l 278 (410)
.| +.|.|.+... ......++.|
T Consensus 71 ---------------------~g---~~i~v~~a~~----------------------------------~~~~~~~~~l 92 (352)
T TIGR01661 71 ---------------------QN---KTIKVSYARP----------------------------------SSDSIKGANL 92 (352)
T ss_pred ---------------------CC---eeEEEEeecc----------------------------------cccccccceE
Confidence 66 7777764210 0012345689
Q ss_pred EEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcC--eEEEEE
Q psy5142 279 KISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKD--VKVSIE 350 (410)
Q Consensus 279 ~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g--~~v~v~ 350 (410)
+|.|||..+++++|+++|++|| .|..+.+... .++|||+|.+.++|+.|+..|+ +..+.| ..|.+.
T Consensus 93 ~v~~l~~~~~~~~l~~~f~~~G----~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~--g~~~~g~~~~i~v~ 166 (352)
T TIGR01661 93 YVSGLPKTMTQHELESIFSPFG----QIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLN--GTTPSGCTEPITVK 166 (352)
T ss_pred EECCccccCCHHHHHHHHhccC----CEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhC--CCccCCCceeEEEE
Confidence 9999999999999999999999 9988877643 3479999999999999999994 455655 566776
Q ss_pred ecC
Q psy5142 351 VVT 353 (410)
Q Consensus 351 ~l~ 353 (410)
...
T Consensus 167 ~a~ 169 (352)
T TIGR01661 167 FAN 169 (352)
T ss_pred ECC
Confidence 654
No 25
>KOG0148|consensus
Probab=99.87 E-value=8.1e-22 Score=181.07 Aligned_cols=172 Identities=16% Similarity=0.240 Sum_probs=142.9
Q ss_pred ceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccccc
Q psy5142 119 AQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFNE 198 (410)
Q Consensus 119 ~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~~ 198 (410)
.-.|||+.|..+++-++|++.|.+| |+|.+.+++||..++ ++|||+||.|-..++|+.||..++| .|-
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pF----GevS~akvirD~~T~----KsKGYgFVSf~~k~dAEnAI~~MnG---qWl- 129 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPF----GEVSDAKVIRDMNTG----KSKGYGFVSFPNKEDAENAIQQMNG---QWL- 129 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccc----cccccceEeecccCC----cccceeEEeccchHHHHHHHHHhCC---eee-
Confidence 4579999999999999999999999 999999999999987 8999999999999999999999996 551
Q ss_pred cccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCCeEE
Q psy5142 199 NCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGALL 278 (410)
Q Consensus 199 ~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g~~l 278 (410)
.. |.|+..|. .+|..++.. ++.. -++.-....+.+|.|
T Consensus 130 ---------------------G~---R~IRTNWA----TRKp~e~n~-------------~~lt-fdeV~NQssp~NtsV 167 (321)
T KOG0148|consen 130 ---------------------GR---RTIRTNWA----TRKPSEMNG-------------KPLT-FDEVYNQSSPDNTSV 167 (321)
T ss_pred ---------------------cc---ceeecccc----ccCccccCC-------------CCcc-HHHHhccCCCCCceE
Confidence 44 77777663 222211110 0000 001122356889999
Q ss_pred EEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEE
Q psy5142 279 KISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIE 350 (410)
Q Consensus 279 ~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~ 350 (410)
|+.|++..++++.|+++|+.|| .|..|++-+..++|||+|.+.|+|..||..+ ++.+|.|+.|+..
T Consensus 168 Y~G~I~~~lte~~mr~~Fs~fG----~I~EVRvFk~qGYaFVrF~tkEaAahAIv~m--Nntei~G~~VkCs 233 (321)
T KOG0148|consen 168 YVGNIASGLTEDLMRQTFSPFG----PIQEVRVFKDQGYAFVRFETKEAAAHAIVQM--NNTEIGGQLVRCS 233 (321)
T ss_pred EeCCcCccccHHHHHHhcccCC----cceEEEEecccceEEEEecchhhHHHHHHHh--cCceeCceEEEEe
Confidence 9999999999999999999999 9999999999999999999999999999999 6789999998774
No 26
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.86 E-value=1.8e-20 Score=198.32 Aligned_cols=187 Identities=19% Similarity=0.279 Sum_probs=139.9
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||.++|+++|+++|+.| |.|.+|.+.++..+ ..+|||||+|.+.++|.+|++.++| ..+
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~f----G~i~~~~i~~~~~g-----~~~G~afV~F~~~e~A~~Av~~l~g--~~i 244 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKF----GEITSAAVMKDGSG-----RSRGFAFVNFEKHEDAAKAVEEMNG--KKI 244 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhc----CCEEEEEEEECCCC-----CcccEEEEEECCHHHHHHHHHHhCC--cEe
Confidence 345789999999999999999999999 99999999988765 7899999999999999999999986 334
Q ss_pred cccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCCe
Q psy5142 197 NENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGA 276 (410)
Q Consensus 197 ~~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g~ 276 (410)
... ..| ..|.+.+.....+......... +.. .........++
T Consensus 245 ~~~-------------------~~g---~~l~v~~a~~k~er~~~~~~~~-~~~---------------~~~~~~~~~~~ 286 (562)
T TIGR01628 245 GLA-------------------KEG---KKLYVGRAQKRAEREAELRRKF-EEL---------------QQERKMKAQGV 286 (562)
T ss_pred ccc-------------------ccc---eeeEeecccChhhhHHHHHhhH-Hhh---------------hhhhhcccCCC
Confidence 100 013 4444432111110000000000 000 00011234567
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC-----ceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEe
Q psy5142 277 LLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE-----PTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEV 351 (410)
Q Consensus 277 ~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~-----~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~ 351 (410)
.|||.||++.+++++|+++|++|| .|..|.+..+. ++|||.|.+.++|.+|+..| ++..++|+.|.|.+
T Consensus 287 ~l~V~nl~~~~~~~~L~~~F~~~G----~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~--~g~~~~gk~l~V~~ 360 (562)
T TIGR01628 287 NLYVKNLDDTVTDEKLRELFSECG----EITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEM--HGRMLGGKPLYVAL 360 (562)
T ss_pred EEEEeCCCCccCHHHHHHHHHhcC----CeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHh--cCCeeCCceeEEEe
Confidence 899999999999999999999999 99999887643 57999999999999999999 67999999999999
Q ss_pred cCchHHH
Q psy5142 352 VTGEEEQ 358 (410)
Q Consensus 352 l~g~eE~ 358 (410)
+..+++.
T Consensus 361 a~~k~~~ 367 (562)
T TIGR01628 361 AQRKEQR 367 (562)
T ss_pred ccCcHHH
Confidence 8876655
No 27
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=99.86 E-value=8.4e-22 Score=162.14 Aligned_cols=96 Identities=35% Similarity=0.650 Sum_probs=71.3
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHh---cCCCeEEcCeEEEEEe
Q psy5142 275 GALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKAL---GSKEIVIKDVKVSIEV 351 (410)
Q Consensus 275 g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l---~~~~~~i~g~~v~v~~ 351 (410)
||+|+|.|++..+++++|+++|++|| .|.||||.+|..+|||||.++++|++|+..+ +++++.|++..+++++
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g----~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFG----EVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS------EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcC----CcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 68999999999999999999999999 9999999999999999999999999999999 3458999999999999
Q ss_pred cCchHHHHHHHHhHHHHHHHHHh
Q psy5142 352 VTGEEEQTVLDRMKIDIFKRRQK 374 (410)
Q Consensus 352 l~g~eE~~yw~k~~~~~~~~~~~ 374 (410)
|+|+||+.||++|.+++++++++
T Consensus 77 LeGeeE~~Yw~ki~e~~~~k~~~ 99 (105)
T PF08777_consen 77 LEGEEEEEYWKKIIEDRQKKRNK 99 (105)
T ss_dssp --HHHHHHHHHHHHHHHHHHH--
T ss_pred CCCHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999877
No 28
>KOG0127|consensus
Probab=99.85 E-value=6.6e-20 Score=182.18 Aligned_cols=281 Identities=21% Similarity=0.357 Sum_probs=184.6
Q ss_pred HHHHHHHhCCCCCCCChhHHhhhccCC----CeEehHHHHhhHHHHhccCcHHHHHHHHhhcC--CceEEEecCccceec
Q psy5142 27 IEQIEYYFSDINLARDKFLQGEIKKDD----GWVELTTMLKFARLAKMTTEAKVIVDALKKST--SKLIEVNEDGTKIRR 100 (410)
Q Consensus 27 ~~QlEfYfsd~Nl~~D~fl~~~~~~~~----g~v~l~~l~~F~r~k~l~~d~~~i~~Al~~~~--S~~levsed~~~vrR 100 (410)
-.||+-+||+..=.+--|+...-..++ |||..+.+-.-+| .+.-+.++. --.|.|.....+.|.
T Consensus 19 ~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qr----------A~~e~~~~kf~Gr~l~v~~A~~R~r~ 88 (678)
T KOG0127|consen 19 GEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQR----------ALAETEQSKFEGRILNVDPAKKRARS 88 (678)
T ss_pred hhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHH----------HHHHhhcCcccceecccccccccccc
Confidence 369999999999999999887666532 7887766433222 222222111 112222222111111
Q ss_pred C-------------CCCCCCCCchhhhhhccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccc
Q psy5142 101 N-------------PEKELPTFDIDFVKDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKK 167 (410)
Q Consensus 101 ~-------------~~~p~p~~~~~~~~~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~ 167 (410)
. ...+-|.. ...+.....|+|+|||+.+..++|+.+|+.| |.|..|.||+..++ +
T Consensus 89 e~~~~~e~~~veK~~~q~~~~k---~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~----G~V~Ei~IP~k~dg-----k 156 (678)
T KOG0127|consen 89 EEVEKGENKAVEKPIEQKRPTK---AKVDLPKWRLIIRNLPFKCKKPDLKNVFSNF----GKVVEIVIPRKKDG-----K 156 (678)
T ss_pred hhcccccchhhhcccccCCcch---hhccCccceEEeecCCcccCcHHHHHHHhhc----ceEEEEEcccCCCC-----C
Confidence 1 01111111 1112336789999999999999999999999 99999999988887 4
Q ss_pred cccEEEEEecCHHHHHHHHHhcCCCCccccccccchhhhhhhhcccccccccCcccccchhhhch---HHHHHHHHHHHH
Q psy5142 168 FKGSIFVTFDNKENAEKFLNENKDKNLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQ---QEYHEEKKQEVR 244 (410)
Q Consensus 168 ~kG~afVeF~~~e~A~~Al~~~~g~~~~~~~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k---~~~~~~k~~e~~ 244 (410)
..|||||.|.+..+|.+|++.+++ .++ .| +++-|.|. ..|......+..
T Consensus 157 lcGFaFV~fk~~~dA~~Al~~~N~--~~i-----------------------~g---R~VAVDWAV~Kd~ye~ta~~~~~ 208 (678)
T KOG0127|consen 157 LCGFAFVQFKEKKDAEKALEFFNG--NKI-----------------------DG---RPVAVDWAVDKDTYEDTAHEEKQ 208 (678)
T ss_pred ccceEEEEEeeHHHHHHHHHhccC--cee-----------------------cC---ceeEEeeecccccccccchhhhh
Confidence 569999999999999999999997 455 66 78877773 233331111100
Q ss_pred hhh-------------hccc----------cCccC--CCC------------------CCC----CCCc------ccccC
Q psy5142 245 SKR-------------DKSK----------KSTEG--DGE------------------GNT----EGSK------QVVLE 271 (410)
Q Consensus 245 ~~~-------------~k~k----------~~~e~--~~~------------------~~~----~~~~------~~~~~ 271 (410)
..+ +..+ ...++ +.. +.. .... .....
T Consensus 209 s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en 288 (678)
T KOG0127|consen 209 SLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTREN 288 (678)
T ss_pred hhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcccchhcccccccc
Confidence 000 0000 00000 000 000 0000 00112
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHh----cCCCeE
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKAL----GSKEIV 341 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l----~~~~~~ 341 (410)
...+.+|||+|||++++++.|+++|++|| +|.|+.++.. .++|||.|.++.+|.+||.+. .++++.
T Consensus 289 ~~~~~tVFvRNL~fD~tEEel~~~fskFG----~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~l 364 (678)
T KOG0127|consen 289 ITEGKTVFVRNLPFDTTEEELKEHFSKFG----EVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVL 364 (678)
T ss_pred ccccceEEEecCCccccHHHHHHHHHhhc----cceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEE
Confidence 34468999999999999999999999999 9999877753 346999999999999999998 455599
Q ss_pred EcCeEEEEEecCchHHHHHH
Q psy5142 342 IKDVKVSIEVVTGEEEQTVL 361 (410)
Q Consensus 342 i~g~~v~v~~l~g~eE~~yw 361 (410)
|.|+.|+|.++-+..|..-+
T Consensus 365 l~GR~Lkv~~Av~RkeA~dm 384 (678)
T KOG0127|consen 365 LDGRLLKVTLAVTRKEAADM 384 (678)
T ss_pred EeccEEeeeeccchHHHHHH
Confidence 99999999999888887644
No 29
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.85 E-value=1.9e-20 Score=198.05 Aligned_cols=158 Identities=20% Similarity=0.295 Sum_probs=132.3
Q ss_pred eeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccccccc
Q psy5142 121 SLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFNENC 200 (410)
Q Consensus 121 tv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~~~~ 200 (410)
+|||+|||.++|+++|.++|++| |.|.+|+|.++..++ +++|||||+|.+.++|++|++.+++ ..+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~----G~v~~v~v~~d~~t~----~s~G~afV~F~~~~~A~~Al~~ln~--~~i---- 67 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPF----GPVLSVRVCRDSVTR----RSLGYGYVNFQNPADAERALETMNF--KRL---- 67 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEecCCCC----CcceEEEEEECCHHHHHHHHHHhCC--CEE----
Confidence 79999999999999999999999 999999999998865 8999999999999999999999884 335
Q ss_pred cchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCCeEEEE
Q psy5142 201 EHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGALLKI 280 (410)
Q Consensus 201 ~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g~~l~v 280 (410)
.| +.|+|.|...-. .........|||
T Consensus 68 -------------------~g---k~i~i~~s~~~~--------------------------------~~~~~~~~~vfV 93 (562)
T TIGR01628 68 -------------------GG---KPIRIMWSQRDP--------------------------------SLRRSGVGNIFV 93 (562)
T ss_pred -------------------CC---eeEEeecccccc--------------------------------cccccCCCceEE
Confidence 66 888887632100 000111236999
Q ss_pred eCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC-----CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEec
Q psy5142 281 SDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG-----EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVV 352 (410)
Q Consensus 281 ~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g-----~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l 352 (410)
.|||.++++++|+++|++|| .|..|.+..+ +++|||+|.+.++|.+|++.+ ++..++|+.|.+...
T Consensus 94 ~nLp~~~~~~~L~~~F~~~G----~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~l--ng~~~~~~~i~v~~~ 164 (562)
T TIGR01628 94 KNLDKSVDNKALFDTFSKFG----NILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKV--NGMLLNDKEVYVGRF 164 (562)
T ss_pred cCCCccCCHHHHHHHHHhcC----CcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHh--cccEecCceEEEecc
Confidence 99999999999999999999 8988887653 457999999999999999999 678889988887543
No 30
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.81 E-value=6.4e-19 Score=184.10 Aligned_cols=186 Identities=18% Similarity=0.241 Sum_probs=128.2
Q ss_pred hhccceeeEeecCCCCCCHHHHHHHHhhccCC--------CCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHH
Q psy5142 115 KDLIAQSLYVKYIPVDATLDDIKDFFKKNTSE--------DVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFL 186 (410)
Q Consensus 115 ~~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~--------~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al 186 (410)
.....|+|||+|||+++|+++|.+||++++.. .+.|.+|.+. ..+|||||+|.+.++|..||
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~----------~~kg~afVeF~~~e~A~~Al 240 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN----------KEKNFAFLEFRTVEEATFAM 240 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC----------CCCCEEEEEeCCHHHHhhhh
Confidence 35678999999999999999999999985210 1345555543 46899999999999999999
Q ss_pred HhcCCCCccccccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCC--
Q psy5142 187 NENKDKNLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEG-- 264 (410)
Q Consensus 187 ~~~~g~~~~~~~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~-- 264 (410)
+ ++| +.| .| ..|.|....+|....... ...............
T Consensus 241 ~-l~g--~~~-----------------------~g---~~l~v~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 284 (509)
T TIGR01642 241 A-LDS--IIY-----------------------SN---VFLKIRRPHDYIPVPQIT-------PEVSQKNPDDNAKNVEK 284 (509)
T ss_pred c-CCC--eEe-----------------------eC---ceeEecCccccCCccccC-------CCCCCCCCccccccccc
Confidence 5 665 556 55 666654333332100000 000000000000000
Q ss_pred CcccccCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCC
Q psy5142 265 SKQVVLELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSK 338 (410)
Q Consensus 265 ~~~~~~~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~ 338 (410)
.............|||.|||..+++++|+++|+.|| .|..+.+..+ .++|||.|.+.++|..|+..| +
T Consensus 285 ~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G----~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l--~ 358 (509)
T TIGR01642 285 LVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFG----DLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAAL--N 358 (509)
T ss_pred ccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC----CeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHc--C
Confidence 000111223457899999999999999999999999 8988877643 457999999999999999999 6
Q ss_pred CeEEcCeEEEEEec
Q psy5142 339 EIVIKDVKVSIEVV 352 (410)
Q Consensus 339 ~~~i~g~~v~v~~l 352 (410)
+..|+|+.|.|..+
T Consensus 359 g~~~~~~~l~v~~a 372 (509)
T TIGR01642 359 GKDTGDNKLHVQRA 372 (509)
T ss_pred CCEECCeEEEEEEC
Confidence 88999999988876
No 31
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.80 E-value=9.9e-19 Score=181.46 Aligned_cols=166 Identities=14% Similarity=0.191 Sum_probs=124.5
Q ss_pred ceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccccc
Q psy5142 119 AQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFNE 198 (410)
Q Consensus 119 ~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~~ 198 (410)
.++|||+|||+++|+++|+++|++| |.|.+|.|++ .+|+|||+|.+.++|++|++.++.....+
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~f----G~V~~v~i~~----------~k~~afVef~~~e~A~~Ai~~~~~~~~~l-- 65 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPF----GPVSYVMMLP----------GKRQALVEFEDEESAKACVNFATSVPIYI-- 65 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhc----CCeeEEEEEC----------CCCEEEEEeCchHHHHHHHHHhhcCCceE--
Confidence 5899999999999999999999999 9999999873 46899999999999999998753212445
Q ss_pred cccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCCeEE
Q psy5142 199 NCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGALL 278 (410)
Q Consensus 199 ~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g~~l 278 (410)
.| +.|.|.+...-. ....... .........-..|
T Consensus 66 ---------------------~g---~~l~v~~s~~~~-----------------~~~~~~~-----~~~~~~~~~~~~v 99 (481)
T TIGR01649 66 ---------------------RG---QPAFFNYSTSQE-----------------IKRDGNS-----DFDSAGPNKVLRV 99 (481)
T ss_pred ---------------------cC---eEEEEEecCCcc-----------------cccCCCC-----cccCCCCCceEEE
Confidence 66 888887531100 0000000 0000011223578
Q ss_pred EEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCc--eEEEEeCChhHHHHHHHHhcCCCeEEcC--eEEEEEec
Q psy5142 279 KISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEP--TAFVRYKKENNAEAVLKALGSKEIVIKD--VKVSIEVV 352 (410)
Q Consensus 279 ~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~--~afV~F~~~e~A~~Al~~l~~~~~~i~g--~~v~v~~l 352 (410)
+|.||++.+++++|+++|+.|| .|..|.+.+... .|||+|.+.++|.+|++.| ++..|.| ..|+|...
T Consensus 100 ~v~nl~~~vt~~~L~~~F~~~G----~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~L--ng~~i~~~~~~l~v~~s 171 (481)
T TIGR01649 100 IVENPMYPITLDVLYQIFNPYG----KVLRIVTFTKNNVFQALVEFESVNSAQHAKAAL--NGADIYNGCCTLKIEYA 171 (481)
T ss_pred EEcCCCCCCCHHHHHHHHhccC----CEEEEEEEecCCceEEEEEECCHHHHHHHHHHh--cCCcccCCceEEEEEEe
Confidence 9999999999999999999999 999998876554 6999999999999999999 4566643 45666544
No 32
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.79 E-value=5.2e-18 Score=177.29 Aligned_cols=188 Identities=11% Similarity=0.130 Sum_probs=130.7
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFN 197 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~ 197 (410)
..++|||+|||+.+|+++|+++|+.| |.|..+.|+++..++ .++|||||+|.+.++|..|+..++| ..+
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~----G~i~~~~~~~~~~~g----~~~g~afv~f~~~~~a~~A~~~l~g--~~~- 362 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESF----GDLKAFNLIKDIATG----LSKGYAFCEYKDPSVTDVAIAALNG--KDT- 362 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEEecCCCC----CcCeEEEEEECCHHHHHHHHHHcCC--CEE-
Confidence 35799999999999999999999999 999999999887665 7899999999999999999999997 445
Q ss_pred ccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCCeE
Q psy5142 198 ENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGAL 277 (410)
Q Consensus 198 ~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g~~ 277 (410)
.| +.|.|.+....... ...........-.................+..+
T Consensus 363 ----------------------~~---~~l~v~~a~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v 411 (509)
T TIGR01642 363 ----------------------GD---NKLHVQRACVGANQ------ATIDTSNGMAPVTLLAKALSQSILQIGGKPTKV 411 (509)
T ss_pred ----------------------CC---eEEEEEECccCCCC------CCccccccccccccccccchhhhccccCCCceE
Confidence 44 45544431100000 000000000000000000000000011234568
Q ss_pred EEEeCCCCC--C--------CHHHHHHHHHhcCCCCCCeeEEEeeCC---------CceEEEEeCChhHHHHHHHHhcCC
Q psy5142 278 LKISDIKEP--V--------SREDIREVLEKVQTDDQEIVFIEFNVG---------EPTAFVRYKKENNAEAVLKALGSK 338 (410)
Q Consensus 278 l~v~nL~~~--~--------t~edLk~~F~~~G~~~~~V~~V~~~~g---------~~~afV~F~~~e~A~~Al~~l~~~ 338 (410)
|+|.|+... + ..++|+++|++|| .|..|.+++. .+.|||+|.+.++|++|+.+| +
T Consensus 412 ~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G----~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~l--n 485 (509)
T TIGR01642 412 VQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYG----PLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGM--N 485 (509)
T ss_pred EEeccCCchhHhcCcchHHHHHHHHHHHHHhcC----CeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHc--C
Confidence 889997531 1 2368999999999 9999988753 356899999999999999999 7
Q ss_pred CeEEcCeEEEEEecC
Q psy5142 339 EIVIKDVKVSIEVVT 353 (410)
Q Consensus 339 ~~~i~g~~v~v~~l~ 353 (410)
|..++|+.|.+....
T Consensus 486 Gr~~~gr~v~~~~~~ 500 (509)
T TIGR01642 486 GRKFNDRVVVAAFYG 500 (509)
T ss_pred CCEECCeEEEEEEeC
Confidence 899999999999876
No 33
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.78 E-value=5.4e-18 Score=175.95 Aligned_cols=187 Identities=15% Similarity=0.167 Sum_probs=127.8
Q ss_pred cceeeEeecCCC-CCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 118 IAQSLYVKYIPV-DATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 118 ~~rtv~V~~lp~-~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
..++|||+|||+ .+|+++|+++|+.| |.|.+|.+.++ .+|+|||+|.+.++|..|+..++| ..+
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~y----G~V~~vki~~~---------~~g~afV~f~~~~~A~~Ai~~lng--~~l 338 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVY----GNVERVKFMKN---------KKETALIEMADPYQAQLALTHLNG--VKL 338 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhc----CCeEEEEEEeC---------CCCEEEEEECCHHHHHHHHHHhCC--CEE
Confidence 457999999998 69999999999999 99999998763 369999999999999999999996 455
Q ss_pred cccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCC---CCCCC-CCcccccCC
Q psy5142 197 NENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDG---EGNTE-GSKQVVLEL 272 (410)
Q Consensus 197 ~~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~---~~~~~-~~~~~~~~~ 272 (410)
.| +.|.|.+...-......+.. .........+-.. ..... .........
T Consensus 339 -----------------------~g---~~l~v~~s~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~ 391 (481)
T TIGR01649 339 -----------------------FG---KPLRVCPSKQQNVQPPREGQ-LDDGLTSYKDYSSSRNHRFKKPGSANKNNIQ 391 (481)
T ss_pred -----------------------CC---ceEEEEEcccccccCCCCCc-CcCCCcccccccCCccccCCCcccccccccC
Confidence 44 55555431100000000000 0000000000000 00000 000001124
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCC--eeEEEeeCCC----ceEEEEeCChhHHHHHHHHhcCCCeEEcCeE
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQE--IVFIEFNVGE----PTAFVRYKKENNAEAVLKALGSKEIVIKDVK 346 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~--V~~V~~~~g~----~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~ 346 (410)
++..+|+|.|||+.+++++|+++|+.|| . |..|.+.+.. +.|||+|.+.++|.+||..| ++..|+++.
T Consensus 392 ~ps~~L~v~NLp~~~tee~L~~lF~~~G----~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~l--n~~~l~~~~ 465 (481)
T TIGR01649 392 PPSATLHLSNIPLSVSEEDLKELFAENG----VHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIAL--NHHQLNEPN 465 (481)
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHHhcC----CccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHh--cCCccCCCC
Confidence 5678999999999999999999999999 6 7777776543 67999999999999999999 678888774
Q ss_pred ------EEEEec
Q psy5142 347 ------VSIEVV 352 (410)
Q Consensus 347 ------v~v~~l 352 (410)
|+|...
T Consensus 466 ~~~~~~lkv~fs 477 (481)
T TIGR01649 466 GSAPYHLKVSFS 477 (481)
T ss_pred CCccceEEEEec
Confidence 666643
No 34
>KOG0145|consensus
Probab=99.78 E-value=8.6e-19 Score=160.26 Aligned_cols=165 Identities=17% Similarity=0.304 Sum_probs=132.3
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
.....|+|..||..+|+|+|+.+|+.. |+|+++.+.|++-++ .+-||+||.|.+++||++|+..++| +.+
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~Si----GeiEScKLvRDKitG----qSLGYGFVNYv~p~DAe~AintlNG--LrL 108 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSI----GEIESCKLVRDKITG----QSLGYGFVNYVRPKDAEKAINTLNG--LRL 108 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcc----cceeeeeeeeccccc----cccccceeeecChHHHHHHHhhhcc--eee
Confidence 345679999999999999999999999 999999999999887 8999999999999999999999997 666
Q ss_pred cccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCCe
Q psy5142 197 NENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGA 276 (410)
Q Consensus 197 ~~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g~ 276 (410)
.. +.|+|... .++....++.
T Consensus 109 -----------------------Q~---KTIKVSyA----------------------------------RPSs~~Ik~a 128 (360)
T KOG0145|consen 109 -----------------------QN---KTIKVSYA----------------------------------RPSSDSIKDA 128 (360)
T ss_pred -----------------------cc---ceEEEEec----------------------------------cCChhhhccc
Confidence 44 55666531 1223456788
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeE----EEeeCC--CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEE
Q psy5142 277 LLKISDIKEPVSREDIREVLEKVQTDDQEIVF----IEFNVG--EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIE 350 (410)
Q Consensus 277 ~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~----V~~~~g--~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~ 350 (410)
.|||.|||..+|..+|.++|++|| .|.. ||-..| ++.|||||+...+|+.||..||+..-.-...+|+|.
T Consensus 129 NLYvSGlPktMtqkelE~iFs~fG----rIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVK 204 (360)
T KOG0145|consen 129 NLYVSGLPKTMTQKELEQIFSPFG----RIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVK 204 (360)
T ss_pred ceEEecCCccchHHHHHHHHHHhh----hhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEE
Confidence 999999999999999999999999 6533 233333 346999999999999999999543322234577777
Q ss_pred ecCch
Q psy5142 351 VVTGE 355 (410)
Q Consensus 351 ~l~g~ 355 (410)
...-.
T Consensus 205 FannP 209 (360)
T KOG0145|consen 205 FANNP 209 (360)
T ss_pred ecCCc
Confidence 66544
No 35
>KOG0131|consensus
Probab=99.76 E-value=3e-18 Score=149.46 Aligned_cols=165 Identities=13% Similarity=0.162 Sum_probs=132.6
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFN 197 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~ 197 (410)
...||||+||+..++++-|.++|-+. |+|.+|+||++.-+. .++|||||+|.++|+|+-|++-++. +++
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqa----gpVv~i~iPkDrv~~----~~qGygF~Ef~~eedadYAikiln~--VkL- 76 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQA----GPVVNLHIPKDRVTQ----KHQGYGFAEFRTEEDADYAIKILNM--VKL- 76 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhc----Cceeeeecchhhhcc----cccceeEEEEechhhhHHHHHHHHH--HHh-
Confidence 35799999999999999999999999 999999999998875 6999999999999999999999984 555
Q ss_pred ccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCCeE
Q psy5142 198 ENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGAL 277 (410)
Q Consensus 198 ~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g~~ 277 (410)
-| ++|+|.... .......-|..
T Consensus 77 ----------------------Yg---rpIrv~kas---------------------------------~~~~nl~vgan 98 (203)
T KOG0131|consen 77 ----------------------YG---RPIRVNKAS---------------------------------AHQKNLDVGAN 98 (203)
T ss_pred ----------------------cC---ceeEEEecc---------------------------------ccccccccccc
Confidence 66 888875211 01123455689
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcCCCC--CCeeEEEe-eCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEecC
Q psy5142 278 LKISDIKEPVSREDIREVLEKVQTDD--QEIVFIEF-NVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVT 353 (410)
Q Consensus 278 l~v~nL~~~~t~edLk~~F~~~G~~~--~~V~~V~~-~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l~ 353 (410)
|||.||.+.+++..|.++|+.||.-. -+|..... ....+.|||.|.+.+.+.+|+..| ++..++++.+++...-
T Consensus 99 lfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~--ngq~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 99 LFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSM--NGQYLCNRPITVSYAF 175 (203)
T ss_pred ccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHh--ccchhcCCceEEEEEE
Confidence 99999999999999999999999110 11221111 123447999999999999999999 6788899999998753
No 36
>KOG0144|consensus
Probab=99.75 E-value=6.3e-18 Score=164.19 Aligned_cols=172 Identities=19% Similarity=0.303 Sum_probs=134.1
Q ss_pred hccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcc
Q psy5142 116 DLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLK 195 (410)
Q Consensus 116 ~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~ 195 (410)
+.+.-.+||+.+|..+++.||+.+|++| |.|..|.|++|+.++ .++|||||.|.+.++|.+|+..+++. .+
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~y----g~V~einl~kDk~t~----~s~gcCFv~~~trk~a~~a~~Alhn~-kt 101 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKY----GNVYEINLIKDKSTG----QSKGCCFVKYYTRKEADEAINALHNQ-KT 101 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHh----CceeEEEeecccccC----cccceEEEEeccHHHHHHHHHHhhcc-cc
Confidence 3556789999999999999999999999 999999999999987 89999999999999999999999852 23
Q ss_pred ccccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCC
Q psy5142 196 FNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTG 275 (410)
Q Consensus 196 ~~~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g 275 (410)
+ .|. -.++.+...+. | ....+..
T Consensus 102 l-----------------------pG~-~~pvqvk~Ad~-------E--------------------------~er~~~e 124 (510)
T KOG0144|consen 102 L-----------------------PGM-HHPVQVKYADG-------E--------------------------RERIVEE 124 (510)
T ss_pred c-----------------------CCC-Ccceeecccch-------h--------------------------hhccccc
Confidence 4 220 02333322110 0 0011333
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC-----CceEEEEeCChhHHHHHHHHhcCCCeEEcCe--EEE
Q psy5142 276 ALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG-----EPTAFVRYKKENNAEAVLKALGSKEIVIKDV--KVS 348 (410)
Q Consensus 276 ~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g-----~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~--~v~ 348 (410)
..|||.-|+..+|+.+++++|++|| .|+.|.+.+| +++|||.|.+.+.|..||++|+ +..++.|. +|.
T Consensus 125 ~KLFvg~lsK~~te~evr~iFs~fG----~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~n-g~~tmeGcs~PLV 199 (510)
T KOG0144|consen 125 RKLFVGMLSKQCTENEVREIFSRFG----HIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALN-GTQTMEGCSQPLV 199 (510)
T ss_pred hhhhhhhccccccHHHHHHHHHhhC----ccchhhheecccccccceeEEEEehHHHHHHHHHhhc-cceeeccCCCceE
Confidence 4688999999999999999999999 9998888875 3569999999999999999996 45677765 667
Q ss_pred EEecCchHHH
Q psy5142 349 IEVVTGEEEQ 358 (410)
Q Consensus 349 v~~l~g~eE~ 358 (410)
|+.+.-+.++
T Consensus 200 VkFADtqkdk 209 (510)
T KOG0144|consen 200 VKFADTQKDK 209 (510)
T ss_pred EEecccCCCc
Confidence 7766544443
No 37
>KOG0127|consensus
Probab=99.75 E-value=1.1e-17 Score=166.55 Aligned_cols=182 Identities=19% Similarity=0.299 Sum_probs=135.0
Q ss_pred ceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccccc
Q psy5142 119 AQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFNE 198 (410)
Q Consensus 119 ~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~~ 198 (410)
..||||++||+.+|.++|.++|+.+ |+|..+.+..+..+. ..+||+||+|+-.||++.|++...+ .+|
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~v----GPik~~~vVt~~gs~----~~RGfgfVtFam~ED~qrA~~e~~~--~kf-- 72 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYV----GPIKHAVVVTNKGSS----EKRGFGFVTFAMEEDVQRALAETEQ--SKF-- 72 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcc----cCcceeEEecCCCcc----cccCccceeeehHhHHHHHHHHhhc--Ccc--
Confidence 3799999999999999999999999 999999999887765 7899999999999999999999874 456
Q ss_pred cccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhh--hccccCccCCCCCCCCCCcccccCCCCCe
Q psy5142 199 NCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKR--DKSKKSTEGDGEGNTEGSKQVVLELPTGA 276 (410)
Q Consensus 199 ~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~--~k~k~~~e~~~~~~~~~~~~~~~~~~~g~ 276 (410)
.| +.|.|.........+..+...+. ++...+... ...... .+.-
T Consensus 73 ---------------------~G---r~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~---------~k~~v~-~~k~ 118 (678)
T KOG0127|consen 73 ---------------------EG---RILNVDPAKKRARSEEVEKGENKAVEKPIEQKRP---------TKAKVD-LPKW 118 (678)
T ss_pred ---------------------cc---eecccccccccccchhcccccchhhhcccccCCc---------chhhcc-Cccc
Confidence 66 66666542111100000000000 000000000 000011 1234
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC-----ceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEe
Q psy5142 277 LLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE-----PTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEV 351 (410)
Q Consensus 277 ~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~-----~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~ 351 (410)
.|.|+|||+.|...+|+.+|+.|| .|..|.+++.. ++|||.|....+|.+|++.+ ++.+|+|++|-|..
T Consensus 119 rLIIRNLPf~~k~~dLk~vFs~~G----~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~--N~~~i~gR~VAVDW 192 (678)
T KOG0127|consen 119 RLIIRNLPFKCKKPDLKNVFSNFG----KVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFF--NGNKIDGRPVAVDW 192 (678)
T ss_pred eEEeecCCcccCcHHHHHHHhhcc----eEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhc--cCceecCceeEEee
Confidence 688999999999999999999999 99999888632 46999999999999999999 67899999998886
Q ss_pred c
Q psy5142 352 V 352 (410)
Q Consensus 352 l 352 (410)
+
T Consensus 193 A 193 (678)
T KOG0127|consen 193 A 193 (678)
T ss_pred e
Confidence 5
No 38
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.73 E-value=8.5e-17 Score=166.00 Aligned_cols=193 Identities=16% Similarity=0.241 Sum_probs=130.0
Q ss_pred ceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccccc
Q psy5142 119 AQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFNE 198 (410)
Q Consensus 119 ~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~~ 198 (410)
.++|||+|||..+|+++|+++|++| |.|..|.|+++..++ .++|||||+|.+.++|.+|+..++| ..+.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~----G~i~~v~~~~d~~~g----~~~g~afV~f~~~e~A~~A~~~l~g--~~i~- 254 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPF----GDIEDVQLHRDPETG----RSKGFGFIQFHDAEEAKEALEVMNG--FELA- 254 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhc----CCeEEEEEEEcCCCC----ccceEEEEEECCHHHHHHHHHhcCC--cEEC-
Confidence 5899999999999999999999999 999999999888765 7899999999999999999999997 4442
Q ss_pred cccchhhhhhhhcccccccccCcccccchhhhchHHHHHHH------------------------HHHHHhhhh-ccc--
Q psy5142 199 NCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEK------------------------KQEVRSKRD-KSK-- 251 (410)
Q Consensus 199 ~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k------------------------~~e~~~~~~-k~k-- 251 (410)
| +.|.|.+..+..... ......... ...
T Consensus 255 ----------------------g---~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (457)
T TIGR01622 255 ----------------------G---RPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGG 309 (457)
T ss_pred ----------------------C---EEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCcc
Confidence 2 233332211000000 000000000 000
Q ss_pred -------------cCccCCCCCC------------CCCCcc--ccc--CCCCCeEEEEeCCCCCCC----------HHHH
Q psy5142 252 -------------KSTEGDGEGN------------TEGSKQ--VVL--ELPTGALLKISDIKEPVS----------REDI 292 (410)
Q Consensus 252 -------------~~~e~~~~~~------------~~~~~~--~~~--~~~~g~~l~v~nL~~~~t----------~edL 292 (410)
.......... ...... ... ......+|.|.||-...+ .+||
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv 389 (457)
T TIGR01622 310 LLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDV 389 (457)
T ss_pred ccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHH
Confidence 0000000000 000000 000 123456788899743332 3789
Q ss_pred HHHHHhcCCCCCCeeEEEeeC--CCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEecC
Q psy5142 293 REVLEKVQTDDQEIVFIEFNV--GEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVT 353 (410)
Q Consensus 293 k~~F~~~G~~~~~V~~V~~~~--g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l~ 353 (410)
++.|++|| .|..|.+.. ..+.+||+|.+.++|.+|+..| +|..++|+.|.+..+.
T Consensus 390 ~~e~~k~G----~v~~v~v~~~~~~G~~fV~F~~~e~A~~A~~~l--nGr~f~gr~i~~~~~~ 446 (457)
T TIGR01622 390 KEECSKYG----GVVHIYVDTKNSAGKIYLKFSSVDAALAAFQAL--NGRYFGGKMITAAFVV 446 (457)
T ss_pred HHHHHhcC----CeeEEEEeCCCCceeEEEEECCHHHHHHHHHHh--cCcccCCeEEEEEEEc
Confidence 99999999 998888863 3567999999999999999999 7899999999999887
No 39
>KOG0145|consensus
Probab=99.69 E-value=7.2e-16 Score=141.22 Aligned_cols=244 Identities=14% Similarity=0.166 Sum_probs=154.8
Q ss_pred cHHHHHHHHhhcCCceEEEecCccceecCCCCCCCCCchhhhhhccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEE
Q psy5142 73 EAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITN 152 (410)
Q Consensus 73 d~~~i~~Al~~~~S~~levsed~~~vrR~~~~p~p~~~~~~~~~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~ 152 (410)
++++..+|+. .-+.|.+...-.+|-- .-|.. ..+....|||++||..+|..+|+.+|++| |.|..
T Consensus 92 ~p~DAe~Ain--tlNGLrLQ~KTIKVSy----ARPSs-----~~Ik~aNLYvSGlPktMtqkelE~iFs~f----GrIIt 156 (360)
T KOG0145|consen 92 RPKDAEKAIN--TLNGLRLQNKTIKVSY----ARPSS-----DSIKDANLYVSGLPKTMTQKELEQIFSPF----GRIIT 156 (360)
T ss_pred ChHHHHHHHh--hhcceeeccceEEEEe----ccCCh-----hhhcccceEEecCCccchHHHHHHHHHHh----hhhhh
Confidence 4666667776 5556666654444432 22332 23667899999999999999999999999 99999
Q ss_pred EEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccccccccchhhhhhhhc---------------cccccc
Q psy5142 153 IIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFNENCEHKNAEKFLNE---------------NKDKNL 217 (410)
Q Consensus 153 v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~~~~~~~~~~k~~~~---------------~~~~~~ 217 (410)
-+|..+.-++ .++|++||.|+..++|+.|+..++| .-+.+|...-..|+.+- .|..+
T Consensus 157 SRiL~dqvtg----~srGVgFiRFDKr~EAe~AIk~lNG---~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr- 228 (360)
T KOG0145|consen 157 SRILVDQVTG----LSRGVGFIRFDKRIEAEEAIKGLNG---QKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARR- 228 (360)
T ss_pred hhhhhhcccc----eecceeEEEecchhHHHHHHHhccC---CCCCCCCCCeEEEecCCcccccchhhhHHhhcCcccc-
Confidence 9998888776 8999999999999999999999997 22223322111111110 11111
Q ss_pred ccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCCeEEEEeCCCCCCCHHHHHHHHH
Q psy5142 218 KFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGALLKISDIKEPVSREDIREVLE 297 (410)
Q Consensus 218 ~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g~~l~v~nL~~~~t~edLk~~F~ 297 (410)
+.|+. +.-...++-++.-...... .+.. -+--+.... -.....+.....|-.|||.||.+++++.-|+++|+
T Consensus 229 -~~Gp~-hh~~~r~r~~~~~~~~~~~----~rfs-P~~~d~m~~-l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFg 300 (360)
T KOG0145|consen 229 -YGGPM-HHQAQRFRLDNLLNPHAAQ----ARFS-PMTIDGMSG-LAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFG 300 (360)
T ss_pred -CCCcc-cchhhhhccccccchhhhh----ccCC-Cccccccce-eeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhC
Confidence 11100 0000000000000000000 0000 000000000 00001122233467899999999999999999999
Q ss_pred hcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEecC
Q psy5142 298 KVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVT 353 (410)
Q Consensus 298 ~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l~ 353 (410)
+|| .|..|++.++ +++|||.+.+-++|.-||..| ++..++++.+.|+..+
T Consensus 301 pFG----Av~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sL--NGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 301 PFG----AVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL--NGYRLGDRVLQVSFKT 356 (360)
T ss_pred ccc----ceeeEEEEecCCcccccceeEEEecchHHHHHHHHHh--cCccccceEEEEEEec
Confidence 999 9988888765 456999999999999999999 7899999999998754
No 40
>KOG0124|consensus
Probab=99.69 E-value=2.3e-16 Score=150.35 Aligned_cols=162 Identities=18% Similarity=0.225 Sum_probs=133.8
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFN 197 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~ 197 (410)
.-+.|||+.+.++.-+|.|+..|.+| |+|.+|.|.-++-++ +++|||||||+-+|.|+-|++.+|| ..+
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PF----GPIKSInMSWDp~T~----kHKgFAFVEYEvPEaAqLAlEqMNg--~ml- 180 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPF----GPIKSINMSWDPATG----KHKGFAFVEYEVPEAAQLALEQMNG--QML- 180 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCC----CCcceeecccccccc----cccceEEEEEeCcHHHHHHHHHhcc--ccc-
Confidence 35789999999999999999999999 999999999998887 8999999999999999999999997 556
Q ss_pred ccccchhhhhhhhcccccccccCcccccchhhhchH------HHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccC
Q psy5142 198 ENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQ------EYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLE 271 (410)
Q Consensus 198 ~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~------~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~ 271 (410)
+| +.|+|.... ...++-.++
T Consensus 181 ----------------------GG---RNiKVgrPsNmpQAQpiID~vqee----------------------------- 206 (544)
T KOG0124|consen 181 ----------------------GG---RNIKVGRPSNMPQAQPIIDMVQEE----------------------------- 206 (544)
T ss_pred ----------------------cC---ccccccCCCCCcccchHHHHHHHH-----------------------------
Confidence 66 766665211 111111111
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCeEEcCe
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE------PTAFVRYKKENNAEAVLKALGSKEIVIKDV 345 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~~i~g~ 345 (410)
..+-..|||..++++.+++|||.+|.-|| +|.+|.+.++. ++|||+|.+..+...||..| +-+.++|.
T Consensus 207 Ak~fnRiYVaSvHpDLSe~DiKSVFEAFG----~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM--NlFDLGGQ 280 (544)
T KOG0124|consen 207 AKKFNRIYVASVHPDLSETDIKSVFEAFG----EIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM--NLFDLGGQ 280 (544)
T ss_pred HHhhheEEeeecCCCccHHHHHHHHHhhc----ceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc--chhhcccc
Confidence 11223689999999999999999999999 99999988653 46999999999999999999 67888888
Q ss_pred EEEEE
Q psy5142 346 KVSIE 350 (410)
Q Consensus 346 ~v~v~ 350 (410)
.++|-
T Consensus 281 yLRVG 285 (544)
T KOG0124|consen 281 YLRVG 285 (544)
T ss_pred eEecc
Confidence 87764
No 41
>KOG0123|consensus
Probab=99.66 E-value=1.2e-15 Score=152.08 Aligned_cols=153 Identities=20% Similarity=0.331 Sum_probs=130.7
Q ss_pred eeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcccccc
Q psy5142 120 QSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFNEN 199 (410)
Q Consensus 120 rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~~~ 199 (410)
.+|||+ +++|+..|.++|+++ |+|.+|++.++. + +-|+|||.|.++++|.+|++.++. -.+
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~----~~v~s~rvc~d~-t------slgy~yvnf~~~~da~~A~~~~n~--~~~--- 62 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPA----GPVLSIRVCRDA-T------SLGYAYVNFQQPADAERALDTMNF--DVL--- 62 (369)
T ss_pred CceecC---CcCChHHHHHHhccc----CCceeEEEeecC-C------ccceEEEecCCHHHHHHHHHHcCC--ccc---
Confidence 368999 899999999999999 999999999987 5 689999999999999999999983 223
Q ss_pred ccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCCeEEE
Q psy5142 200 CEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGALLK 279 (410)
Q Consensus 200 ~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g~~l~ 279 (410)
.| ++++++|... ....|+
T Consensus 63 --------------------~~---~~~rim~s~r---------------------------------------d~~~~~ 80 (369)
T KOG0123|consen 63 --------------------KG---KPIRIMWSQR---------------------------------------DPSLVF 80 (369)
T ss_pred --------------------CC---cEEEeehhcc---------------------------------------CCceee
Confidence 67 9999997421 001299
Q ss_pred EeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCc---eEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEecCchH
Q psy5142 280 ISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEP---TAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVTGEE 356 (410)
Q Consensus 280 v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~---~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l~g~e 356 (410)
|.||+++++..+|.++|+.|| +|..|.+.+... ..||+|+++++|++|++.+ ++..++|+.|-+-+..-++
T Consensus 81 i~nl~~~~~~~~~~d~f~~~g----~ilS~kv~~~~~g~kg~FV~f~~e~~a~~ai~~~--ng~ll~~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 81 IKNLDESIDNKSLYDTFSEFG----NILSCKVATDENGSKGYFVQFESEESAKKAIEKL--NGMLLNGKKIYVGLFERKE 154 (369)
T ss_pred ecCCCcccCcHHHHHHHHhhc----CeeEEEEEEcCCCceeeEEEeCCHHHHHHHHHHh--cCcccCCCeeEEeeccchh
Confidence 999999999999999999999 999998886432 2499999999999999999 6788999999998887666
Q ss_pred HHH
Q psy5142 357 EQT 359 (410)
Q Consensus 357 E~~ 359 (410)
|..
T Consensus 155 er~ 157 (369)
T KOG0123|consen 155 ERE 157 (369)
T ss_pred hhc
Confidence 653
No 42
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=3.8e-17 Score=157.86 Aligned_cols=151 Identities=26% Similarity=0.454 Sum_probs=129.0
Q ss_pred HHHHHHHHhC-----CCCCCCChhHHhhhccC---CCeEehHHHHhhHHHHhccCcHHHHHHHHhhcCC---ceEEEecC
Q psy5142 26 IIEQIEYYFS-----DINLARDKFLQGEIKKD---DGWVELTTMLKFARLAKMTTEAKVIVDALKKSTS---KLIEVNED 94 (410)
Q Consensus 26 i~~QlEfYfs-----d~Nl~~D~fl~~~~~~~---~g~v~l~~l~~F~r~k~l~~d~~~i~~Al~~~~S---~~levsed 94 (410)
+..|+||||| |.|+++|+||+....++ +|||||.++.+|+||+.++...+.+..||+ .| .+++++.+
T Consensus 75 ~l~qvE~~fS~s~~~d~n~~~dk~~ktta~Kn~~~~kwVpIkt~~tfn~~k~~gs~~~~v~~a~r--ks~~~rv~e~Sss 152 (438)
T COG5193 75 TLKQVEFYFSGSKDTDSNFPKDKFLKTTAPKNKKRDKWVPIKTIATFNRMKNSGSPVSAVSGALR--KSLDARVLEVSSS 152 (438)
T ss_pred cccceeEEeeccccccccccchhhhccccccccCCCCceeeeeeeeeccccccCCchhhhhhhhh--cCcccceeeeccc
Confidence 8999999999 99999999999999987 899999999999999999999999999999 67 79999999
Q ss_pred ccceecCCCCCCCCCchhhhhhccceeeEeecCCCCCCHH--------HHHHHHhh--ccCCCCceEEEEEcccCccccc
Q psy5142 95 GTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDATLD--------DIKDFFKK--NTSEDVKITNIIMRNYQDKLAN 164 (410)
Q Consensus 95 ~~~vrR~~~~p~p~~~~~~~~~~~~rtv~V~~lp~~~t~~--------~L~~~F~~--~~~~~G~I~~v~l~~~~~~~~~ 164 (410)
|..++|.. ++-.... ...+.-.|.+|+.+|+...+.+ ++..+|.+ . +++..|+++++....
T Consensus 153 gsn~~r~~--k~~s~n~-~s~~~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h----~~~~~i~~rrd~~nk-- 223 (438)
T COG5193 153 GSNKNRTE--KLISNNN-KSTSQMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYH----APPSQIRNRRDWLNK-- 223 (438)
T ss_pred cccccccc--hhhhhhh-hhhhhHhhhHHhhcCCcccccccccchhhhhHHhhCCCccc----CChhhccchhhhhhc--
Confidence 99999983 2222211 1125667999999999875544 99999998 7 899999999987433
Q ss_pred ccccccEEEEEecCHHHHHHHHHhc
Q psy5142 165 QKKFKGSIFVTFDNKENAEKFLNEN 189 (410)
Q Consensus 165 ~~~~kG~afVeF~~~e~A~~Al~~~ 189 (410)
.++|..|++|.....+++++...
T Consensus 224 --n~~gSv~~efk~~~~~q~~nn~~ 246 (438)
T COG5193 224 --NFRGSVFVEFKYFREAQRFNNGF 246 (438)
T ss_pred --cccCcccccccChHHHHHHhccc
Confidence 89999999999999999998543
No 43
>KOG0105|consensus
Probab=99.63 E-value=9.6e-15 Score=127.80 Aligned_cols=176 Identities=17% Similarity=0.304 Sum_probs=130.9
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||.++-+.+|+.+|.+| |.|..|.|.... ...+||||+|+++-+|+.||..-+| ..|
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKy----g~i~~ieLK~r~-------g~ppfafVeFEd~RDAeDAiygRdG--Ydy 70 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKY----GRIREIELKNRP-------GPPPFAFVEFEDPRDAEDAIYGRDG--YDY 70 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhh----cceEEEEeccCC-------CCCCeeEEEecCccchhhhhhcccc--ccc
Confidence 346899999999999999999999999 999999885432 4578999999999999999998886 555
Q ss_pred cccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCC------C-CCCCCcccc
Q psy5142 197 NENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGE------G-NTEGSKQVV 269 (410)
Q Consensus 197 ~~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~------~-~~~~~~~~~ 269 (410)
.| ..|+|.+..-.- ........ . .......-+
T Consensus 71 -----------------------dg---~rLRVEfprggr---------------~s~~~~G~y~gggrgGgg~gg~rgp 109 (241)
T KOG0105|consen 71 -----------------------DG---CRLRVEFPRGGR---------------SSSDRRGSYSGGGRGGGGGGGRRGP 109 (241)
T ss_pred -----------------------Cc---ceEEEEeccCCC---------------cccccccccCCCCCCCCCCCcccCC
Confidence 66 677776532110 00000000 0 000011112
Q ss_pred cCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEE
Q psy5142 270 LELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSI 349 (410)
Q Consensus 270 ~~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v 349 (410)
+.......|.|.+||+..+|+|||++..+-| +|.|.++.++ ++|.|.|-..++.+-|+..|.+..+.--|...-+
T Consensus 110 psrrSe~RVvVsGLp~SgSWQDLKDHmReaG----dvCfadv~rD-g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yi 184 (241)
T KOG0105|consen 110 PSRRSEYRVVVSGLPPSGSWQDLKDHMREAG----DVCFADVQRD-GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYI 184 (241)
T ss_pred cccccceeEEEecCCCCCchHHHHHHHHhhC----Ceeeeeeecc-cceeeeeeehhhHHHHHHhhccccccCcCcEeeE
Confidence 3334456788999999999999999999999 9999999885 5899999999999999999976665555655555
Q ss_pred Ee
Q psy5142 350 EV 351 (410)
Q Consensus 350 ~~ 351 (410)
.+
T Consensus 185 rv 186 (241)
T KOG0105|consen 185 RV 186 (241)
T ss_pred Ee
Confidence 44
No 44
>KOG0110|consensus
Probab=99.58 E-value=6.7e-15 Score=151.13 Aligned_cols=174 Identities=18% Similarity=0.294 Sum_probs=135.2
Q ss_pred eeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcccccc
Q psy5142 120 QSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFNEN 199 (410)
Q Consensus 120 rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~~~ 199 (410)
.+|||+||++++|.++|...|+.. |.|.+|.|...++... ...+.||+||+|.++++|+.|+..++| ..+
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~----G~VlS~~I~kkkd~~~-k~lSmGfgFVEF~~~e~A~~a~k~lqg--tvl--- 585 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQ----GTVLSIEISKKKDPAN-KYLSMGFGFVEFAKPESAQAALKALQG--TVL--- 585 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhc----CeEEEEEEeccccccc-cccccceeEEEecCHHHHHHHHHHhcC--cee---
Confidence 349999999999999999999999 9999999987665411 224679999999999999999999986 234
Q ss_pred ccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCCeEEE
Q psy5142 200 CEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGALLK 279 (410)
Q Consensus 200 ~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g~~l~ 279 (410)
.| +.|.+.... . +++ ...........+++-|.
T Consensus 586 --------------------dG---H~l~lk~S~--~--------------k~~---------~~~gK~~~~kk~~tKIl 617 (725)
T KOG0110|consen 586 --------------------DG---HKLELKISE--N--------------KPA---------STVGKKKSKKKKGTKIL 617 (725)
T ss_pred --------------------cC---ceEEEEecc--C--------------ccc---------cccccccccccccceee
Confidence 66 666665321 0 000 00001112223367899
Q ss_pred EeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEecC
Q psy5142 280 ISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVT 353 (410)
Q Consensus 280 v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l~ 353 (410)
|+|||+..+..+++.+|..|| .|..|+++.- .++|||.|-++.+|..|+.+| +.+.+-|+.+.++...
T Consensus 618 VRNipFeAt~rEVr~LF~aFG----qlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al--~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 618 VRNIPFEATKREVRKLFTAFG----QLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDAL--GSTHLYGRRLVLEWAK 691 (725)
T ss_pred eeccchHHHHHHHHHHHhccc----ceeeeccchhhcchhhccceeeeccCcHHHHHHHHhh--cccceechhhheehhc
Confidence 999999999999999999999 9999999863 346899999999999999999 5788899998888776
Q ss_pred chHH
Q psy5142 354 GEEE 357 (410)
Q Consensus 354 g~eE 357 (410)
.+.-
T Consensus 692 ~d~~ 695 (725)
T KOG0110|consen 692 SDNT 695 (725)
T ss_pred cchH
Confidence 5543
No 45
>KOG0109|consensus
Probab=99.57 E-value=6.8e-15 Score=136.95 Aligned_cols=145 Identities=17% Similarity=0.333 Sum_probs=123.8
Q ss_pred eeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccccccc
Q psy5142 121 SLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFNENC 200 (410)
Q Consensus 121 tv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~~~~ 200 (410)
.|||+|||..+++.+|+.+|++| |.|+.+.|+ |.++||..++...|+.|+..++| .++
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~y----gkVlECDIv------------KNYgFVHiEdktaaedairNLhg--YtL---- 61 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQY----GKVLECDIV------------KNYGFVHIEDKTAAEDAIRNLHG--YTL---- 61 (346)
T ss_pred chhccCCCcccchHHHHHHHHhh----CceEeeeee------------cccceEEeecccccHHHHhhccc--cee----
Confidence 58999999999999999999999 999999886 67899999999999999998886 555
Q ss_pred cchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCCeEEEE
Q psy5142 201 EHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGALLKI 280 (410)
Q Consensus 201 ~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g~~l~v 280 (410)
.| ..|.|... +. ....-+.|+|
T Consensus 62 -------------------hg---~nInVeaS------------------ks------------------Ksk~stkl~v 83 (346)
T KOG0109|consen 62 -------------------HG---VNINVEAS------------------KS------------------KSKASTKLHV 83 (346)
T ss_pred -------------------cc---eEEEEEec------------------cc------------------cCCCcccccc
Confidence 55 55555310 00 0112246889
Q ss_pred eCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEecC
Q psy5142 281 SDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVT 353 (410)
Q Consensus 281 ~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l~ 353 (410)
.||.+.|+.++|+..|.+|| .|..+|+++ +.+||.|+-.++|..|+..| ++.++.|+.+.|.+-+
T Consensus 84 gNis~tctn~ElRa~fe~yg----pviecdivk--dy~fvh~d~~eda~~air~l--~~~~~~gk~m~vq~st 148 (346)
T KOG0109|consen 84 GNISPTCTNQELRAKFEKYG----PVIECDIVK--DYAFVHFDRAEDAVEAIRGL--DNTEFQGKRMHVQLST 148 (346)
T ss_pred CCCCccccCHHHhhhhcccC----Cceeeeeec--ceeEEEEeeccchHHHHhcc--cccccccceeeeeeec
Confidence 99999999999999999999 999999987 78999999999999999999 6789999999999865
No 46
>KOG0147|consensus
Probab=99.55 E-value=1.1e-14 Score=146.08 Aligned_cols=177 Identities=12% Similarity=0.216 Sum_probs=138.0
Q ss_pred hhhccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCC
Q psy5142 114 VKDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKN 193 (410)
Q Consensus 114 ~~~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~ 193 (410)
..+.+.||||+-.++...+.-+|.+||+.+ |.|..|+|+.+...+ .++|.+||+|.+.+++..||..-+
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~----gkVrdVriI~Dr~s~----rskgi~Yvef~D~~sVp~aiaLsG--- 242 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIV----GKVRDVRIIGDRNSR----RSKGIAYVEFCDEQSVPLAIALSG--- 242 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhh----cCcceeEeeccccch----hhcceeEEEEecccchhhHhhhcC---
Confidence 457889999999999999999999999999 999999999998876 899999999999999999997655
Q ss_pred ccccccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCC
Q psy5142 194 LKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELP 273 (410)
Q Consensus 194 ~~~~~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~ 273 (410)
..+ -| .+|.|...+. . ++. .+.. .. .........
T Consensus 243 qrl-----------------------lg---~pv~vq~sEa-e--knr--~a~~------s~---------a~~~k~~~~ 276 (549)
T KOG0147|consen 243 QRL-----------------------LG---VPVIVQLSEA-E--KNR--AANA------SP---------ALQGKGFTG 276 (549)
T ss_pred Ccc-----------------------cC---ceeEecccHH-H--HHH--HHhc------cc---------ccccccccc
Confidence 444 45 6666654221 1 000 0000 00 000000111
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEE
Q psy5142 274 TGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKV 347 (410)
Q Consensus 274 ~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v 347 (410)
+...|+|.||++.+++++|+.+|..|| .|..|+++.+ +++|||+|.+.++|.+|+..| ++++|.|+.|
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg----~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~l--ngfelAGr~i 350 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFG----KIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQL--NGFELAGRLI 350 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcc----cceeeeeccccccccccCcceEEEecHHHHHHHHHHh--ccceecCceE
Confidence 122289999999999999999999999 9999988865 346999999999999999999 5699999999
Q ss_pred EEEecC
Q psy5142 348 SIEVVT 353 (410)
Q Consensus 348 ~v~~l~ 353 (410)
+|.+++
T Consensus 351 kV~~v~ 356 (549)
T KOG0147|consen 351 KVSVVT 356 (549)
T ss_pred EEEEee
Confidence 998875
No 47
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.53 E-value=8.8e-13 Score=138.06 Aligned_cols=109 Identities=16% Similarity=0.136 Sum_probs=80.6
Q ss_pred cHHHHHHHHhhcCCceEEEecCccceecCCCCCCCC--CchhhhhhccceeeEeecCCCCCCHHHHHHHHhhccCCCCce
Q psy5142 73 EAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPT--FDIDFVKDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKI 150 (410)
Q Consensus 73 d~~~i~~Al~~~~S~~levsed~~~vrR~~~~p~p~--~~~~~~~~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I 150 (410)
+.+....|+. .-+...+..-..+|+|....|.+. .+.........++|||+|||.++++++|+++|+.| |.|
T Consensus 158 s~e~A~~Ai~--~lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~F----G~I 231 (612)
T TIGR01645 158 VPEAAQLALE--QMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAF----GEI 231 (612)
T ss_pred cHHHHHHHHH--hcCCeEEecceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhc----CCe
Confidence 5677777887 334555655555565532111111 00000112245799999999999999999999999 999
Q ss_pred EEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 151 TNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 151 ~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
.+++|.++..++ .++|||||+|.+.++|.+|++.+|+
T Consensus 232 ~svrl~~D~~tg----ksKGfGFVeFe~~e~A~kAI~amNg 268 (612)
T TIGR01645 232 VKCQLARAPTGR----GHKGYGFIEYNNLQSQSEAIASMNL 268 (612)
T ss_pred eEEEEEecCCCC----CcCCeEEEEECCHHHHHHHHHHhCC
Confidence 999999988775 7899999999999999999999986
No 48
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.51 E-value=1.6e-13 Score=119.71 Aligned_cols=75 Identities=13% Similarity=0.219 Sum_probs=67.4
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCeE
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDVK 346 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~ 346 (410)
...+.|||.|||+++++++|+++|++|| .|..|.++.+ ..+|||.|.++++|+.|++.| ++..|+|+.
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G----~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~l--ng~~i~Gr~ 105 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFG----DVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM--DGKELNGRH 105 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCC----CeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHc--CCCEECCEE
Confidence 4456899999999999999999999999 9999988754 357999999999999999999 678999999
Q ss_pred EEEEecC
Q psy5142 347 VSIEVVT 353 (410)
Q Consensus 347 v~v~~l~ 353 (410)
|+|.+..
T Consensus 106 l~V~~a~ 112 (144)
T PLN03134 106 IRVNPAN 112 (144)
T ss_pred EEEEeCC
Confidence 9999865
No 49
>KOG4211|consensus
Probab=99.50 E-value=2.4e-13 Score=134.77 Aligned_cols=169 Identities=19% Similarity=0.272 Sum_probs=117.7
Q ss_pred ceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccccc
Q psy5142 119 AQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFNE 198 (410)
Q Consensus 119 ~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~~ 198 (410)
..-|-+.+|||++|++||++||+.| .|.++.+++.. + +..|-|||+|.++|++++|++..- ..+
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~-----~I~~~~~~r~~--G----r~sGeA~Ve~~seedv~~AlkkdR---~~m-- 73 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNC-----GIENLEIPRRN--G----RPSGEAYVEFTSEEDVEKALKKDR---ESM-- 73 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcC-----ceeEEEEeccC--C----CcCcceEEEeechHHHHHHHHhhH---HHh--
Confidence 4567889999999999999999999 78887776642 2 679999999999999999998754 222
Q ss_pred cccchhhhhhhhcccccccccCcccccchhhhch---H-HHHHHHHHHHHhhhhccccCccCCCCCCCCCCccccc-CCC
Q psy5142 199 NCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQ---Q-EYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVL-ELP 273 (410)
Q Consensus 199 ~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k---~-~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~-~~~ 273 (410)
.. +=|.|-.. + +|. .....+ ...
T Consensus 74 ---------------------g~---RYIEVf~~~~~e~d~~----------------------------~~~~g~~s~~ 101 (510)
T KOG4211|consen 74 ---------------------GH---RYIEVFTAGGAEADWV----------------------------MRPGGPNSSA 101 (510)
T ss_pred ---------------------CC---ceEEEEccCCcccccc----------------------------ccCCCCCCCC
Confidence 11 22222210 0 000 000001 113
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCc--eEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEe
Q psy5142 274 TGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEP--TAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEV 351 (410)
Q Consensus 274 ~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~--~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~ 351 (410)
...+|.+++||+.||++||.++|+-+-+.+..|..+.-.++.. .|||+|.+++.|++|+... ...|+-+-|.|-.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rh---re~iGhRYIEvF~ 178 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRH---RENIGHRYIEVFR 178 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHH---HHhhccceEEeeh
Confidence 4568999999999999999999998762222444444444443 5999999999999999986 4667777777765
Q ss_pred cCchHHH
Q psy5142 352 VTGEEEQ 358 (410)
Q Consensus 352 l~g~eE~ 358 (410)
..=.|.+
T Consensus 179 Ss~~e~~ 185 (510)
T KOG4211|consen 179 SSRAEVK 185 (510)
T ss_pred hHHHHHH
Confidence 5433333
No 50
>KOG4205|consensus
Probab=99.49 E-value=7.5e-14 Score=135.11 Aligned_cols=169 Identities=16% Similarity=0.221 Sum_probs=131.4
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFN 197 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~ 197 (410)
+.+.|+|++|+|++|++.|+.+|++| |+|..+.+.++..++ +.+||+||+|++++.+..++.... +++
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~----Gev~d~~vm~d~~t~----rsrgFgfv~f~~~~~v~~vl~~~~---h~~- 72 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQF----GEVTDCVVMRDPSTG----RSRGFGFVTFATPEGVDAVLNART---HKL- 72 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhccc----CceeeEEEeccCCCC----CcccccceecCCCcchheeecccc---ccc-
Confidence 57899999999999999999999999 999999999998886 899999999999999999988766 455
Q ss_pred ccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCCeE
Q psy5142 198 ENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGAL 277 (410)
Q Consensus 198 ~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g~~ 277 (410)
.+ +.+.+.. ... + + ..........-..
T Consensus 73 ----------------------dg---r~ve~k~--av~----------------r-~---------~~~~~~~~~~tkk 99 (311)
T KOG4205|consen 73 ----------------------DG---RSVEPKR--AVS----------------R-E---------DQTKVGRHLRTKK 99 (311)
T ss_pred ----------------------CC---cccccee--ccC----------------c-c---------cccccccccceeE
Confidence 44 3333221 000 0 0 0000111123457
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEe
Q psy5142 278 LKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEV 351 (410)
Q Consensus 278 l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~ 351 (410)
+||.+||.+++++++++.|.+|| .|..+.++.+ .++|||.|.++++.++++..- -+.++|+.|.|..
T Consensus 100 iFvGG~~~~~~e~~~r~yfe~~g----~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~---f~~~~gk~vevkr 172 (311)
T KOG4205|consen 100 IFVGGLPPDTTEEDFKDYFEQFG----KVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQK---FHDFNGKKVEVKR 172 (311)
T ss_pred EEecCcCCCCchHHHhhhhhccc----eeEeeEEeecccccccccceeeEeccccccceecccc---eeeecCceeeEee
Confidence 89999999999999999999999 7776655543 345999999999988887664 7899999999999
Q ss_pred cCchHHH
Q psy5142 352 VTGEEEQ 358 (410)
Q Consensus 352 l~g~eE~ 358 (410)
+...+..
T Consensus 173 A~pk~~~ 179 (311)
T KOG4205|consen 173 AIPKEVM 179 (311)
T ss_pred ccchhhc
Confidence 8866555
No 51
>KOG0144|consensus
Probab=99.48 E-value=1.4e-13 Score=134.27 Aligned_cols=140 Identities=21% Similarity=0.264 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHhC--CCCCCCChhHHhhhccCCCeEehHHHHhhHHHHhccCcHHHHHHHHhhcCCceEEEecCccce
Q psy5142 21 KLENQIIEQIEYYFS--DINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDALKKSTSKLIEVNEDGTKI 98 (410)
Q Consensus 21 ~~~~~i~~QlEfYfs--d~Nl~~D~fl~~~~~~~~g~v~l~~l~~F~r~k~l~~d~~~i~~Al~~~~S~~levsed~~~v 98 (410)
-....|+.-.|-|=. ..||.||+--. ...||.=| +|.. ..+....+.||. +-..|. ....-|
T Consensus 46 ~sE~dlr~lFe~yg~V~einl~kDk~t~----~s~gcCFv----~~~t----rk~a~~a~~Alh--n~ktlp--G~~~pv 109 (510)
T KOG0144|consen 46 ASEKDLRELFEKYGNVYEINLIKDKSTG----QSKGCCFV----KYYT----RKEADEAINALH--NQKTLP--GMHHPV 109 (510)
T ss_pred ccHHHHHHHHHHhCceeEEEeecccccC----cccceEEE----Eecc----HHHHHHHHHHhh--cccccC--CCCcce
Confidence 344555655665522 35778887433 12365322 2222 135667788888 322221 111111
Q ss_pred ecCCCCCCCCCchhhhhhccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecC
Q psy5142 99 RRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDN 178 (410)
Q Consensus 99 rR~~~~p~p~~~~~~~~~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~ 178 (410)
.=+ |.. -|...-.+++.|||+-|+..+|+.+|+++|++| |.|+++.|.|+.++ .++|||||.|.+
T Consensus 110 qvk-----~Ad-~E~er~~~e~KLFvg~lsK~~te~evr~iFs~f----G~Ied~~ilrd~~~-----~sRGcaFV~fst 174 (510)
T KOG0144|consen 110 QVK-----YAD-GERERIVEERKLFVGMLSKQCTENEVREIFSRF----GHIEDCYILRDPDG-----LSRGCAFVKFST 174 (510)
T ss_pred eec-----ccc-hhhhccccchhhhhhhccccccHHHHHHHHHhh----Cccchhhheecccc-----cccceeEEEEeh
Confidence 111 011 111112457899999999999999999999999 99999999999988 899999999999
Q ss_pred HHHHHHHHHhcCC
Q psy5142 179 KENAEKFLNENKD 191 (410)
Q Consensus 179 ~e~A~~Al~~~~g 191 (410)
.|-|..|++.++|
T Consensus 175 ke~A~~Aika~ng 187 (510)
T KOG0144|consen 175 KEMAVAAIKALNG 187 (510)
T ss_pred HHHHHHHHHhhcc
Confidence 9999999999997
No 52
>KOG0146|consensus
Probab=99.48 E-value=1.5e-13 Score=126.53 Aligned_cols=66 Identities=21% Similarity=0.297 Sum_probs=63.1
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
-++|.|||+-|...-.+||++.+|..| |+|.++.+.+..++ .+||||||.|.+..+|+.||..++|
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pf----G~~~e~tvlrg~dg-----~sKGCAFVKf~s~~eAqaAI~aLHg 82 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPF----GNIEECTVLRGPDG-----NSKGCAFVKFSSHAEAQAAINALHG 82 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhccc----CCcceeEEecCCCC-----CCCCceEEEeccchHHHHHHHHhcc
Confidence 478999999999999999999999999 99999999998888 8999999999999999999999997
No 53
>KOG4206|consensus
Probab=99.47 E-value=1.2e-12 Score=118.68 Aligned_cols=186 Identities=19% Similarity=0.283 Sum_probs=125.1
Q ss_pred eeeEeecCCCCCCHHHHHH----HHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcc
Q psy5142 120 QSLYVKYIPVDATLDDIKD----FFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLK 195 (410)
Q Consensus 120 rtv~V~~lp~~~t~~~L~~----~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~ 195 (410)
.||||.||+..+..++|+. +|++| |.|.+|.+.+.. +.+|-|||.|.+.+.|-.|+..++| .-
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqf----G~ildI~a~kt~-------KmRGQA~VvFk~~~~As~A~r~l~g--fp 76 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQF----GKILDISAFKTP-------KMRGQAFVVFKETEAASAALRALQG--FP 76 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhh----CCeEEEEecCCC-------CccCceEEEecChhHHHHHHHHhcC--Cc
Confidence 4999999999999999988 99999 999999987643 6799999999999999999999997 55
Q ss_pred ccccccchhhhhhhhcccccccccCcccccchhhhchH---HHHHHHHHHHHhh-----hhc-cccCccCCCCCC----C
Q psy5142 196 FNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQ---EYHEEKKQEVRSK-----RDK-SKKSTEGDGEGN----T 262 (410)
Q Consensus 196 ~~~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~---~~~~~k~~e~~~~-----~~k-~k~~~e~~~~~~----~ 262 (410)
| -| +++++.... +...+.......+ .++ .......+.+.. .
T Consensus 77 F-----------------------yg---K~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~ 130 (221)
T KOG4206|consen 77 F-----------------------YG---KPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMN 130 (221)
T ss_pred c-----------------------cC---chhheecccCccchhhccCceeccccCccccccccccCCcccccccccccc
Confidence 5 33 444433211 1111100000000 000 000000000000 0
Q ss_pred -CCC--cccccCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC-ceEEEEeCChhHHHHHHHHhcCC
Q psy5142 263 -EGS--KQVVLELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE-PTAFVRYKKENNAEAVLKALGSK 338 (410)
Q Consensus 263 -~~~--~~~~~~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~-~~afV~F~~~e~A~~Al~~l~~~ 338 (410)
... .......+++.+|++.|||..++.+.|..+|.+|. .-..|.+..+. ..|||+|.+...|..|...++
T Consensus 131 ~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~----g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq-- 204 (221)
T KOG4206|consen 131 RMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQFP----GFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQ-- 204 (221)
T ss_pred cccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHhhCc----ccceeEeccCCCceeEEecchhhhhHHHhhhhc--
Confidence 000 00123478889999999999999999999999998 77777777754 569999999999999999994
Q ss_pred CeEEc-CeEEEEE
Q psy5142 339 EIVIK-DVKVSIE 350 (410)
Q Consensus 339 ~~~i~-g~~v~v~ 350 (410)
+..|- ...+.+.
T Consensus 205 ~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 205 GFKITKKNTMQIT 217 (221)
T ss_pred cceeccCceEEec
Confidence 44443 4555543
No 54
>KOG0123|consensus
Probab=99.46 E-value=4.6e-13 Score=133.69 Aligned_cols=178 Identities=24% Similarity=0.312 Sum_probs=132.6
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
.....+||.+++.+++.+.|..+|+.+ |+|.++.++++..+ .++||+||.|++.++|..|+..+++ ..+
T Consensus 165 ~~~t~v~vk~~~~~~~~~~l~~~f~~~----g~i~s~~v~~~~~g-----~~~~~gfv~f~~~e~a~~av~~l~~--~~~ 233 (369)
T KOG0123|consen 165 KRFTNVYVKNLEEDSTDEELKDLFSAY----GSITSVAVMRDSIG-----KSKGFGFVNFENPEDAKKAVETLNG--KIF 233 (369)
T ss_pred hhhhhhheeccccccchHHHHHhhccc----CcceEEEEeecCCC-----CCCCccceeecChhHHHHHHHhccC--CcC
Confidence 345689999999999999999999999 99999999998887 7899999999999999999999996 334
Q ss_pred cccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCCe
Q psy5142 197 NENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGA 276 (410)
Q Consensus 197 ~~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g~ 276 (410)
.+ ..+.|.....-.+. ..+-.. ..... ...........
T Consensus 234 -----------------------~~---~~~~V~~aqkk~e~-~~~l~~-----~~~~~----------~~~~~~~~~~~ 271 (369)
T KOG0123|consen 234 -----------------------GD---KELYVGRAQKKSER-EAELKR-----KFEQE----------FAKRSVSLQGA 271 (369)
T ss_pred -----------------------Cc---cceeecccccchhh-HHHHhh-----hhHhh----------hhhcccccccc
Confidence 22 33333321110000 000000 00000 00111234456
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC-----CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEe
Q psy5142 277 LLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG-----EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEV 351 (410)
Q Consensus 277 ~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g-----~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~ 351 (410)
.|+|.|++..++.+.|+..|+.|| +|..+.+... .++|||.|.++++|.+|+..+ ++-.+.++.+.|.+
T Consensus 272 nl~vknld~~~~~e~L~~~f~~~G----eI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~--n~~~i~~k~l~vav 345 (369)
T KOG0123|consen 272 NLYVKNLDETLSDEKLRKIFSSFG----EITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEM--NGRLIGGKPLYVAV 345 (369)
T ss_pred ccccccCccccchhHHHHHHhccc----ceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhh--ChhhhcCCchhhhH
Confidence 899999999999999999999999 9988777653 456999999999999999999 67788888888876
Q ss_pred cC
Q psy5142 352 VT 353 (410)
Q Consensus 352 l~ 353 (410)
+.
T Consensus 346 ~q 347 (369)
T KOG0123|consen 346 AQ 347 (369)
T ss_pred Hh
Confidence 54
No 55
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.41 E-value=7.4e-13 Score=115.51 Aligned_cols=69 Identities=13% Similarity=0.218 Sum_probs=63.4
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
..++|||+|||+++|+++|+++|++| |.|.+|.|+.+..++ +++|||||+|.+.++|+.|++.+++ ..+
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~----G~I~~v~i~~d~~tg----~~kGfaFV~F~~~e~A~~Al~~lng--~~i 101 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHF----GDVVDAKVIVDRETG----RSRGFGFVNFNDEGAATAAISEMDG--KEL 101 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC----CCeEEEEEEecCCCC----CcceEEEEEECCHHHHHHHHHHcCC--CEE
Confidence 45789999999999999999999999 999999999988775 8999999999999999999999886 445
No 56
>KOG0110|consensus
Probab=99.38 E-value=4.6e-12 Score=130.49 Aligned_cols=214 Identities=19% Similarity=0.255 Sum_probs=131.9
Q ss_pred hhccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCc
Q psy5142 115 KDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNL 194 (410)
Q Consensus 115 ~~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~ 194 (410)
++...+-|+|+|||..+..++|..+|..| |.|..|.||+... .++|+|.++.+|.+|+..+.. .
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~f----G~i~rvllp~~G~----------~aiv~fl~p~eAr~Afrklay--s 444 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRF----GEIGRVLLPPGGT----------GAIVEFLNPLEARKAFRKLAY--S 444 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcc----cccceeecCcccc----------eeeeeecCccchHHHHHHhch--h
Confidence 45667889999999999999999999999 9999998773211 299999999999999999873 2
Q ss_pred ccccc--ccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCC-CcccccC
Q psy5142 195 KFNEN--CEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEG-SKQVVLE 271 (410)
Q Consensus 195 ~~~~~--~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~-~~~~~~~ 271 (410)
.+... +-...+......+ +....+.... ... +. ....+.... ..+....+.....+. .......
T Consensus 445 r~k~~plyle~aP~dvf~~~-pka~~~~~e~-~~~-~e-------e~~~Er~s~---~d~~v~eD~d~te~ss~a~~a~~ 511 (725)
T KOG0110|consen 445 RFKSAPLYLEWAPEDVFTED-PKADDLSAES-RSK-ME-------ENPSERVSA---EDGQVEEDKDPTEESSLARVAED 511 (725)
T ss_pred hhccCccccccChhhhccCC-cccccccccc-ccc-cc-------cCcceeccc---ccccccccCCccccccchhhhhc
Confidence 22100 0011111111111 1100000000 000 00 000000000 000000000000000 0001112
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC---------ceEEEEeCChhHHHHHHHHhcCCCeEE
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE---------PTAFVRYKKENNAEAVLKALGSKEIVI 342 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~---------~~afV~F~~~e~A~~Al~~l~~~~~~i 342 (410)
...-+.||+.||+++++.++|..+|.+.| .|..+.|..-. ++|||+|.++++|+.|++.| ++..|
T Consensus 512 ~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G----~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~l--qgtvl 585 (725)
T KOG0110|consen 512 EETETKLFVKNLNFDTTLEDLEDLFSKQG----TVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKAL--QGTVL 585 (725)
T ss_pred cccchhhhhhcCCcccchhHHHHHHHhcC----eEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHh--cCcee
Confidence 23334499999999999999999999999 88888665422 67999999999999999999 68999
Q ss_pred cCeEEEEEecC------chHHHHHHHH
Q psy5142 343 KDVKVSIEVVT------GEEEQTVLDR 363 (410)
Q Consensus 343 ~g~~v~v~~l~------g~eE~~yw~k 363 (410)
+|+.|.|++.. +.....+|++
T Consensus 586 dGH~l~lk~S~~k~~~~~gK~~~~kk~ 612 (725)
T KOG0110|consen 586 DGHKLELKISENKPASTVGKKKSKKKK 612 (725)
T ss_pred cCceEEEEeccCccccccccccccccc
Confidence 99999999876 3355556665
No 57
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.35 E-value=2.5e-12 Score=97.06 Aligned_cols=64 Identities=39% Similarity=0.572 Sum_probs=58.5
Q ss_pred eEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 122 LYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 122 v~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
|||+|||.++|.++|+++|++| |.|..+.+..+..+ .++|+|||+|.+.++|++|++.++| ..+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~----g~i~~~~~~~~~~~-----~~~~~a~V~F~~~~~a~~a~~~l~g--~~~ 64 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQF----GKIESIKVMRNSSG-----KSKGYAFVEFESEEDAEKALEELNG--KKI 64 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTT----STEEEEEEEEETTS-----SEEEEEEEEESSHHHHHHHHHHHTT--EEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHh----hhcccccccccccc-----cccceEEEEEcCHHHHHHHHHHcCC--CEE
Confidence 7999999999999999999999 99999999887444 7899999999999999999999886 445
No 58
>KOG0106|consensus
Probab=99.34 E-value=2e-12 Score=118.22 Aligned_cols=167 Identities=20% Similarity=0.353 Sum_probs=120.7
Q ss_pred eeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcccccc
Q psy5142 120 QSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFNEN 199 (410)
Q Consensus 120 rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~~~ 199 (410)
..|||++||+.+.+.+|..||..| |.|..|.|. .||+||+|.+.-+|..|+..++++ .|
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~y----g~~~d~~mk------------~gf~fv~fed~rda~Dav~~l~~~--~l--- 60 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGY----GKIPDADMK------------NGFGFVEFEDPRDADDAVHDLDGK--EL--- 60 (216)
T ss_pred CceeecccCCccchhHHHHHHhhc----cccccceee------------cccceeccCchhhhhcccchhcCc--ee---
Confidence 368999999999999999999999 999998774 678899999999999999988852 33
Q ss_pred ccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCCeEEE
Q psy5142 200 CEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGALLK 279 (410)
Q Consensus 200 ~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g~~l~ 279 (410)
.+ ..+.+.+.....- .+..-..+ .-...........-..|.+.
T Consensus 61 --------------------~~---e~~vve~~r~~~~-------------~~g~~~~g-~r~~~~~~~~~p~~s~~r~~ 103 (216)
T KOG0106|consen 61 --------------------CG---ERLVVEHARGKRR-------------GRGRPRGG-DRRSDSRRYRPPSRTHFRLI 103 (216)
T ss_pred --------------------cc---eeeeeeccccccc-------------ccCCCCCC-CccchhhccCCcccccceee
Confidence 22 2244443211000 00000000 00000001112244578999
Q ss_pred EeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEec
Q psy5142 280 ISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVV 352 (410)
Q Consensus 280 v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l 352 (410)
|.+++..+++.+|++.|.++| .+.+++.. ...|||+|.+.++|..|+..+ .+..+.++.|++..-
T Consensus 104 ~~~~~~r~~~qdl~d~~~~~g----~~~~~~~~--~~~~~v~Fs~~~da~ra~~~l--~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 104 VRNLSLRVSWQDLKDHFRPAG----EVTYVDAR--RNFAFVEFSEQEDAKRALEKL--DGKKLNGRRISVEKN 168 (216)
T ss_pred eccchhhhhHHHHhhhhcccC----CCchhhhh--ccccceeehhhhhhhhcchhc--cchhhcCceeeeccc
Confidence 999999999999999999999 88666653 367999999999999999999 678899999988433
No 59
>KOG0147|consensus
Probab=99.32 E-value=5.4e-12 Score=126.83 Aligned_cols=220 Identities=19% Similarity=0.211 Sum_probs=137.3
Q ss_pred eeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccccccc
Q psy5142 121 SLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFNENC 200 (410)
Q Consensus 121 tv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~~~~ 200 (410)
.|||+||-..+|+++|+.+|++| |.|..|.++++..++ .++||+||+|.+.++|.+|+..+|| +.+++.+
T Consensus 280 rl~vgnLHfNite~~lr~ifepf----g~Ie~v~l~~d~~tG----~skgfGfi~f~~~~~ar~a~e~lng--felAGr~ 349 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPF----GKIENVQLTKDSETG----RSKGFGFITFVNKEDARKALEQLNG--FELAGRL 349 (549)
T ss_pred hhhhcccccCchHHHHhhhccCc----ccceeeeeccccccc----cccCcceEEEecHHHHHHHHHHhcc--ceecCce
Confidence 39999999999999999999999 999999999998665 8999999999999999999999997 6676666
Q ss_pred cchhhhhhhhcccccccc---cCcccccch--hhhchHHHHHHHHHHHHhhhhccc--------cCccCCCC-----CCC
Q psy5142 201 EHKNAEKFLNENKDKNLK---FNENCEHSL--LIKWQQEYHEEKKQEVRSKRDKSK--------KSTEGDGE-----GNT 262 (410)
Q Consensus 201 ~~~~~~k~~~~~~~~~~~---~~g~~~~~L--~v~~k~~~~~~k~~e~~~~~~k~k--------~~~e~~~~-----~~~ 262 (410)
+.+......-..+...+. +...-...| -... +.+.+....+... ........ +..
T Consensus 350 ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g-------~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~ 422 (549)
T KOG0147|consen 350 IKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGG-------RNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFN 422 (549)
T ss_pred EEEEEeeeecccccccccccccchhhcccccccccc-------HHHHHHHHhccCCccccchhhhHHHhccccchHHhhc
Confidence 543111100000000000 000000011 0000 0000000000000 00000000 000
Q ss_pred --------CC-CcccccCCCCCeEEEEeCC--CCCCC--------HHHHHHHHHhcCCCCCCeeEEEeeCCC-ceEEEEe
Q psy5142 263 --------EG-SKQVVLELPTGALLKISDI--KEPVS--------REDIREVLEKVQTDDQEIVFIEFNVGE-PTAFVRY 322 (410)
Q Consensus 263 --------~~-~~~~~~~~~~g~~l~v~nL--~~~~t--------~edLk~~F~~~G~~~~~V~~V~~~~g~-~~afV~F 322 (410)
.. ...+....+..| +.+.|+ |.+.| ++|+.+-+.+|| .|..|.+.++. +.-||+|
T Consensus 423 ~~~~~~~~~p~~~~p~~~i~t~C-~lL~nMFdpstete~n~d~eI~edV~Eec~k~g----~v~hi~vd~ns~g~VYvrc 497 (549)
T KOG0147|consen 423 GVVRVRSVDPADASPAFDIPTQC-LLLSNMFDPSTETEPNWDQEIREDVIEECGKHG----KVCHIFVDKNSAGCVYVRC 497 (549)
T ss_pred CCcCccccCccccccccCCccHH-HHHhhcCCcccccCcchhhHHHHHHHHHHHhcC----CeeEEEEccCCCceEEEec
Confidence 00 000111123334 335552 22222 588999999999 99998887766 6789999
Q ss_pred CChhHHHHHHHHhcCCCeEEcCeEEEEEecCchHHHHHHHHhHHH
Q psy5142 323 KKENNAEAVLKALGSKEIVIKDVKVSIEVVTGEEEQTVLDRMKID 367 (410)
Q Consensus 323 ~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l~g~eE~~yw~k~~~~ 367 (410)
.+.+.|..|+.+| ++-.+.|+-|++..+. ...|..++++.
T Consensus 498 ~s~~~A~~a~~al--hgrWF~gr~Ita~~~~---~~~Y~~~FP~~ 537 (549)
T KOG0147|consen 498 PSAEAAGTAVKAL--HGRWFAGRMITAKYLP---LERYHSKFPDS 537 (549)
T ss_pred CcHHHHHHHHHHH--hhhhhccceeEEEEee---hhhhhhhCCCc
Confidence 9999999999999 8899999999999886 56777766553
No 60
>KOG1548|consensus
Probab=99.29 E-value=2.9e-11 Score=115.37 Aligned_cols=194 Identities=16% Similarity=0.246 Sum_probs=122.9
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEE--------EEEcccCcccccccccccEEEEEecCHHHHHHHHHh
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITN--------IIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNE 188 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~--------v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~ 188 (410)
.....|||+|||.++|.+++.++|++| |-|.. |.|-++.++ .++|=|.+.|-..|++.-|+..
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKc----GiI~~d~~t~epk~KlYrd~~G-----~lKGDaLc~y~K~ESVeLA~~i 202 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKC----GIIMRDPQTGEPKVKLYRDNQG-----KLKGDALCCYIKRESVELAIKI 202 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhc----ceEeccCCCCCeeEEEEecCCC-----CccCceEEEeecccHHHHHHHH
Confidence 345669999999999999999999999 86632 334444443 8999999999999999999999
Q ss_pred cCCCCccccccccchhhhhhhhcccccccccCcccccchhhhch-----HHHHHHHHHHHHhhhhccccCccCCCCCCCC
Q psy5142 189 NKDKNLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQ-----QEYHEEKKQEVRSKRDKSKKSTEGDGEGNTE 263 (410)
Q Consensus 189 ~~g~~~~~~~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k-----~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~ 263 (410)
+++ ..+ .| ..|+|.-. ..|...++........+..+.+....-...
T Consensus 203 lDe--~~~-----------------------rg---~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~- 253 (382)
T KOG1548|consen 203 LDE--DEL-----------------------RG---KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWR- 253 (382)
T ss_pred hCc--ccc-----------------------cC---cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccC-
Confidence 986 344 33 44443311 111110000000000000000000000000
Q ss_pred CCcccccCCCCCeEEEEeCC--CC--CCC-------HHHHHHHHHhcCCCCCCeeEEEee--CCCceEEEEeCChhHHHH
Q psy5142 264 GSKQVVLELPTGALLKISDI--KE--PVS-------REDIREVLEKVQTDDQEIVFIEFN--VGEPTAFVRYKKENNAEA 330 (410)
Q Consensus 264 ~~~~~~~~~~~g~~l~v~nL--~~--~~t-------~edLk~~F~~~G~~~~~V~~V~~~--~g~~~afV~F~~~e~A~~ 330 (410)
..........-.++|.|.|+ |. ..+ .++|++-+.+|| .|..|.+- ...+.+-|+|.+.+.|..
T Consensus 254 pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G----~v~~vvv~d~hPdGvvtV~f~n~eeA~~ 329 (382)
T KOG1548|consen 254 PDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFG----QVRKVVVYDRHPDGVVTVSFRNNEEADQ 329 (382)
T ss_pred CCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhC----CcceEEEeccCCCceeEEEeCChHHHHH
Confidence 00001122334568888884 22 223 578888899999 88887665 445678899999999999
Q ss_pred HHHHhcCCCeEEcCeEEEEEecCc
Q psy5142 331 VLKALGSKEIVIKDVKVSIEVVTG 354 (410)
Q Consensus 331 Al~~l~~~~~~i~g~~v~v~~l~g 354 (410)
||+.| +|..++|+.|+.++-.|
T Consensus 330 ciq~m--~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 330 CIQTM--DGRWFDGRQLTASIWDG 351 (382)
T ss_pred HHHHh--cCeeecceEEEEEEeCC
Confidence 99999 78999999999887654
No 61
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.27 E-value=1.2e-11 Score=93.87 Aligned_cols=64 Identities=22% Similarity=0.466 Sum_probs=57.2
Q ss_pred eEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 122 LYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 122 v~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
|||+|||+++|.++|+++|+.| |.|..|+|.+.+.+ .++|+|||+|.++++|.+|+...++ ..+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~----g~v~~v~~~~~~~~-----~~~~~a~v~f~~~~~a~~al~~~~~--~~~ 64 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRF----GPVEKVRLIKNKDG-----QSRGFAFVEFSSEEDAKRALELLNG--KEI 64 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTS----SBEEEEEEEESTTS-----SEEEEEEEEESSHHHHHHHHHHHTT--EEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhc----CCcceEEEEeeecc-----ccCCEEEEEeCCHHHHHHHHHHCCC--cEE
Confidence 7999999999999999999999 99999999988774 8999999999999999999999885 445
No 62
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.21 E-value=2.4e-11 Score=113.96 Aligned_cols=64 Identities=25% Similarity=0.333 Sum_probs=57.3
Q ss_pred ceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 119 AQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 119 ~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
.++|||+|||+.+|+++|++||+.| |.|.+|.|+++.. .+|||||+|.++++|+.||. ++| ..+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~----G~I~~V~I~~d~~-------~~GfAFVtF~d~eaAe~All-LnG--~~l 67 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFS----GDIEYVEMQSENE-------RSQIAYVTFKDPQGAETALL-LSG--ATI 67 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeecCC-------CCCEEEEEeCcHHHHHHHHH-hcC--Cee
Confidence 5899999999999999999999999 9999999987653 47999999999999999996 565 455
No 63
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.20 E-value=6.2e-11 Score=117.75 Aligned_cols=100 Identities=21% Similarity=0.249 Sum_probs=76.8
Q ss_pred cHHHHHHHHhhcCCceEEEecCccceecCCCCCCCCCchhhhhhccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEE
Q psy5142 73 EAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITN 152 (410)
Q Consensus 73 d~~~i~~Al~~~~S~~levsed~~~vrR~~~~p~p~~~~~~~~~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~ 152 (410)
|.+.+..||.. -+...+.....+|... .|.. .....++|||.|||.++|+++|+++|++| |.|..
T Consensus 158 ~~e~A~~Ai~~--LnG~~l~gr~i~V~~a----~p~~-----~~~~~~~lfV~nLp~~vtee~L~~~F~~f----G~V~~ 222 (346)
T TIGR01659 158 SEADSQRAIKN--LNGITVRNKRLKVSYA----RPGG-----ESIKDTNLYVTNLPRTITDDQLDTIFGKY----GQIVQ 222 (346)
T ss_pred cHHHHHHHHHH--cCCCccCCceeeeecc----cccc-----cccccceeEEeCCCCcccHHHHHHHHHhc----CCEEE
Confidence 56777777773 2334444333333322 1211 12346789999999999999999999999 99999
Q ss_pred EEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 153 IIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 153 v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
|.|+++..++ +++|||||+|.+.++|++||+.+++
T Consensus 223 v~i~~d~~tg----~~kG~aFV~F~~~e~A~~Ai~~lng 257 (346)
T TIGR01659 223 KNILRDKLTG----TPRGVAFVRFNKREEAQEAISALNN 257 (346)
T ss_pred EEEeecCCCC----ccceEEEEEECCHHHHHHHHHHhCC
Confidence 9999987665 7899999999999999999999996
No 64
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.19 E-value=9.9e-11 Score=88.17 Aligned_cols=65 Identities=25% Similarity=0.408 Sum_probs=59.0
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC-----CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEE
Q psy5142 278 LKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG-----EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVS 348 (410)
Q Consensus 278 l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g-----~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~ 348 (410)
|+|.|||+++++++|+++|++|| .|..+.+.+. ...|||+|.+.++|++|++.+ ++..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g----~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l--~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFG----KIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEEL--NGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTS----TEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHH--TTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhh----hcccccccccccccccceEEEEEcCHHHHHHHHHHc--CCCEECccCcC
Confidence 68999999999999999999999 9988888873 345999999999999999999 67999999874
No 65
>KOG0121|consensus
Probab=99.17 E-value=5.1e-11 Score=98.77 Aligned_cols=72 Identities=24% Similarity=0.235 Sum_probs=65.6
Q ss_pred hhccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCc
Q psy5142 115 KDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNL 194 (410)
Q Consensus 115 ~~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~ 194 (410)
.-...+||||+||..-+|++.|.++|+.| |+|..|.|=.++.+. .+-|||||+|-+.++|..|+..++| .
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~c----G~irriiMGLdr~kk----tpCGFCFVeyy~~~dA~~Alryisg--t 101 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKC----GDIRRIIMGLDRFKK----TPCGFCFVEYYSRDDAEDALRYISG--T 101 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhc----cchheeEeccccCCc----CccceEEEEEecchhHHHHHHHhcc--C
Confidence 44667999999999999999999999999 999999998888775 8999999999999999999999997 4
Q ss_pred cc
Q psy5142 195 KF 196 (410)
Q Consensus 195 ~~ 196 (410)
.+
T Consensus 102 rL 103 (153)
T KOG0121|consen 102 RL 103 (153)
T ss_pred cc
Confidence 45
No 66
>KOG0122|consensus
Probab=99.16 E-value=5.3e-11 Score=108.83 Aligned_cols=67 Identities=21% Similarity=0.326 Sum_probs=64.4
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
.+..||-|.|||.++++++|+++|.+| |.|..|.|.+++.++ .++|||||+|.+.++|.+||+.++|
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~f----g~i~rvylardK~TG----~~kGFAFVtF~sRddA~rAI~~LnG 253 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPF----GPITRVYLARDKETG----LSKGFAFVTFESRDDAARAIADLNG 253 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhcc----CccceeEEEEccccC----cccceEEEEEecHHHHHHHHHHccC
Confidence 367899999999999999999999999 999999999999997 9999999999999999999999997
No 67
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.13 E-value=3.7e-10 Score=106.24 Aligned_cols=145 Identities=21% Similarity=0.310 Sum_probs=104.3
Q ss_pred ceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccccc
Q psy5142 119 AQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFNE 198 (410)
Q Consensus 119 ~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~~ 198 (410)
.++|||+|||+++|+++|.++|.+| |.|..|.|..+..++ .++|+|||+|.+.++|..|+..+++ ..|
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~----g~~~~~~~~~d~~~~----~~~g~~~v~f~~~~~~~~a~~~~~~--~~~-- 182 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKF----GPVKRVRLVRDRETG----KSRGFAFVEFESEESAEKAIEELNG--KEL-- 182 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhc----CceeEEEeeeccccC----ccCceEEEEecCHHHHHHHHHHcCC--CeE--
Confidence 5999999999999999999999999 999999999987554 8999999999999999999999996 455
Q ss_pred cccchhhhhhhhcccccccccCcccccchhhhchHH-HHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCCeE
Q psy5142 199 NCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQE-YHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGAL 277 (410)
Q Consensus 199 ~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~-~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g~~ 277 (410)
.| +.|.|.+... .... .... .. ...................+..
T Consensus 183 ---------------------~~---~~~~v~~~~~~~~~~--~~~~------~~---~~~~~~~~~~~~~~~~~~~~~~ 227 (306)
T COG0724 183 ---------------------EG---RPLRVQKAQPASQPR--SELS------NN---LDASFAKKLSRGKALLLEKSDN 227 (306)
T ss_pred ---------------------CC---ceeEeeccccccccc--cccc------cc---cchhhhccccccccccccccce
Confidence 55 6666665321 0000 0000 00 0000000000111234556778
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC
Q psy5142 278 LKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG 314 (410)
Q Consensus 278 l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g 314 (410)
+++.+++..++...+...|..+| .+..+.+...
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 260 (306)
T COG0724 228 LYVGNLPLKTAEEELADLFKSRG----DIVRASLPPS 260 (306)
T ss_pred eeccccccccchhHHHHhccccc----cceeeeccCC
Confidence 89999999999999999999999 7766666543
No 68
>KOG4212|consensus
Probab=99.12 E-value=5.6e-10 Score=109.36 Aligned_cols=191 Identities=19% Similarity=0.325 Sum_probs=126.8
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...|++||.|+|+++.+.+|+++|.... |+|+.|.|.-+..+ +.+|||.|||+++|.+++|++.++ +..|
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekv---Gev~yveLl~D~~G-----K~rGcavVEFk~~E~~qKa~E~ln--k~~~ 111 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKV---GEVEYVELLFDESG-----KARGCAVVEFKDPENVQKALEKLN--KYEV 111 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhc---CceEeeeeecccCC-----CcCCceEEEeeCHHHHHHHHHHhh--hccc
Confidence 3468899999999999999999998643 99999999998887 899999999999999999999998 2455
Q ss_pred cccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhh------------------c---------
Q psy5142 197 NENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRD------------------K--------- 249 (410)
Q Consensus 197 ~~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~------------------k--------- 249 (410)
.| ++|.|.-.. ..++......-+. +
T Consensus 112 -----------------------~G---R~l~vKEd~--d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~ 163 (608)
T KOG4212|consen 112 -----------------------NG---RELVVKEDH--DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDR 163 (608)
T ss_pred -----------------------cC---ceEEEeccC--chhhhhhhheeeccCcccccCcceecccccccccCCCCccc
Confidence 66 777765311 1110000000000 0
Q ss_pred --cccCccCCCC-----CCC-C----CCc-------------ccccCCCC-CeEEEEeCCCCCCCHHHHHHHHHhcCCCC
Q psy5142 250 --SKKSTEGDGE-----GNT-E----GSK-------------QVVLELPT-GALLKISDIKEPVSREDIREVLEKVQTDD 303 (410)
Q Consensus 250 --~k~~~e~~~~-----~~~-~----~~~-------------~~~~~~~~-g~~l~v~nL~~~~t~edLk~~F~~~G~~~ 303 (410)
.....+.+.. ... + ... +-..-.+| --.+||.||...+....|++.|.-.|
T Consensus 164 ~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAG--- 240 (608)
T KOG4212|consen 164 DRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAG--- 240 (608)
T ss_pred cCCCCcccccccccccCccccccccccchhhhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccce---
Confidence 0000000000 000 0 000 00001122 23577999999999999999999999
Q ss_pred CCeeEEEeeCCC-----ceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEe
Q psy5142 304 QEIVFIEFNVGE-----PTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEV 351 (410)
Q Consensus 304 ~~V~~V~~~~g~-----~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~ 351 (410)
.|.+|++..++ +.|.++|..+-.|-.||.+++.++ +..++.++++
T Consensus 241 -kv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g--~~~~~~~~Rl 290 (608)
T KOG4212|consen 241 -KVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQG--LFDRRMTVRL 290 (608)
T ss_pred -eeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCC--Cccccceeec
Confidence 89999987543 358899999999999999994322 2334444443
No 69
>KOG1457|consensus
Probab=99.12 E-value=2.2e-10 Score=103.41 Aligned_cols=209 Identities=16% Similarity=0.249 Sum_probs=108.5
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFN 197 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~ 197 (410)
.-|||||.+||.++..-+|..+|..|-. -+...|... .++ ..-.+.+|||+|.+..+|..|+..++| +.|.
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~G----YEgslLK~T-sk~--~~~~~pvaFatF~s~q~A~aamnaLNG--vrFD 103 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHG----YEGSLLKYT-SKG--DQVCKPVAFATFTSHQFALAAMNALNG--VRFD 103 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCC----ccceeeeec-cCC--CccccceEEEEecchHHHHHHHHHhcC--eeec
Confidence 3699999999999999999999998832 223333222 111 013578999999999999999999998 6773
Q ss_pred ccccchhhhhhhhc-ccccccccCc--ccccchhhh--ch----HHHHHHHHHHHHhhh--h-ccccC-ccCCC---CC-
Q psy5142 198 ENCEHKNAEKFLNE-NKDKNLKFNE--NCEHSLLIK--WQ----QEYHEEKKQEVRSKR--D-KSKKS-TEGDG---EG- 260 (410)
Q Consensus 198 ~~~~~~~~~k~~~~-~~~~~~~~~g--~~~~~L~v~--~k----~~~~~~k~~e~~~~~--~-k~k~~-~e~~~---~~- 260 (410)
..+-...--.+... .+-++-+..+ ..+..+.+. .+ ..+...-........ + ...+. ++.+. ++
T Consensus 104 pE~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l 183 (284)
T KOG1457|consen 104 PETGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEAL 183 (284)
T ss_pred cccCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhh
Confidence 22211000000000 0000000000 000000000 00 000000000000000 0 00000 00000 00
Q ss_pred -CCC-----CCc--ccccCCCC----CeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHH
Q psy5142 261 -NTE-----GSK--QVVLELPT----GALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNA 328 (410)
Q Consensus 261 -~~~-----~~~--~~~~~~~~----g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A 328 (410)
+.. ... ....+.-. -.+|||.||...|++++|+.+|+.|. +..|..+.-.-|...|||.|++-+.|
T Consensus 184 ~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~--gf~~l~~~~~~g~~vaf~~~~~~~~a 261 (284)
T KOG1457|consen 184 SAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYP--GFHILKIRARGGMPVAFADFEEIEQA 261 (284)
T ss_pred hhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCC--CceEEEEecCCCcceEeecHHHHHHH
Confidence 000 000 00011111 14799999999999999999999998 22444444445566799999999999
Q ss_pred HHHHHHhcC
Q psy5142 329 EAVLKALGS 337 (410)
Q Consensus 329 ~~Al~~l~~ 337 (410)
..|+..|++
T Consensus 262 t~am~~lqg 270 (284)
T KOG1457|consen 262 TDAMNHLQG 270 (284)
T ss_pred HHHHHHhhc
Confidence 999988853
No 70
>KOG0148|consensus
Probab=99.10 E-value=5e-10 Score=103.83 Aligned_cols=71 Identities=14% Similarity=0.247 Sum_probs=60.6
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEE
Q psy5142 277 LLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIE 350 (410)
Q Consensus 277 ~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~ 350 (410)
.++|..|...++-++|++.|.+|| +|...++.++ +++|||.|-+.++|+.||..| ++-.|+++.|+..
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFG----evS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~M--nGqWlG~R~IRTN 137 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFG----EVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQM--NGQWLGRRTIRTN 137 (321)
T ss_pred eEEehhcchhcchHHHHHHhcccc----ccccceEeecccCCcccceeEEeccchHHHHHHHHHh--CCeeeccceeecc
Confidence 577888999999999999999999 8877766653 457999999999999999999 7889998888765
Q ss_pred ecC
Q psy5142 351 VVT 353 (410)
Q Consensus 351 ~l~ 353 (410)
.++
T Consensus 138 WAT 140 (321)
T KOG0148|consen 138 WAT 140 (321)
T ss_pred ccc
Confidence 543
No 71
>KOG0107|consensus
Probab=99.09 E-value=8.3e-10 Score=96.40 Aligned_cols=77 Identities=14% Similarity=0.251 Sum_probs=66.3
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeC-CCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEe
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNV-GEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEV 351 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~-g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~ 351 (410)
+.++.|||.||+..+++.+|..+|..|| .+..|=+.. -.++|||+|+++-+|+.|+..| ++..|+|..|.|++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG----~lrsvWvArnPPGfAFVEFed~RDA~DAvr~L--DG~~~cG~r~rVE~ 81 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYG----PLRSVWVARNPPGFAFVEFEDPRDAEDAVRYL--DGKDICGSRIRVEL 81 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcC----cceeEEEeecCCCceEEeccCcccHHHHHhhc--CCccccCceEEEEe
Confidence 4578999999999999999999999999 774443332 2478999999999999999999 78999999999999
Q ss_pred cCch
Q psy5142 352 VTGE 355 (410)
Q Consensus 352 l~g~ 355 (410)
-+|.
T Consensus 82 S~G~ 85 (195)
T KOG0107|consen 82 STGR 85 (195)
T ss_pred ecCC
Confidence 8754
No 72
>smart00362 RRM_2 RNA recognition motif.
Probab=99.07 E-value=5.2e-10 Score=83.45 Aligned_cols=61 Identities=33% Similarity=0.511 Sum_probs=56.8
Q ss_pred eeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 121 SLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 121 tv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
||||+|||..++.++|+++|++| |.|..+.+.+.. + .++|+|||+|.+.++|+.|+..+++
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~----g~v~~~~~~~~~-~-----~~~~~~~v~f~~~~~a~~a~~~~~~ 61 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKF----GPIESVKIPKDT-G-----KSKGFAFVEFESEEDAEKAIEALNG 61 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhc----CCEEEEEEecCC-C-----CCCceEEEEeCCHHHHHHHHHHhCC
Confidence 68999999999999999999999 999999998776 3 6899999999999999999998885
No 73
>KOG0149|consensus
Probab=99.06 E-value=3.3e-10 Score=103.32 Aligned_cols=66 Identities=17% Similarity=0.290 Sum_probs=62.3
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcC
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENK 190 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~ 190 (410)
..-..|||+||||+++.++|+++|++| |+|+.+.++.|+.++ ++||++||+|.+.|+|.+|++..+
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqf----GeI~eavvitd~~t~----rskGyGfVTf~d~~aa~rAc~dp~ 75 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQF----GEIVEAVVITDKNTG----RSKGYGFVTFRDAEAATRACKDPN 75 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHh----CceEEEEEEeccCCc----cccceeeEEeecHHHHHHHhcCCC
Confidence 445789999999999999999999999 999999999999987 999999999999999999999876
No 74
>KOG0105|consensus
Probab=99.05 E-value=7e-10 Score=97.55 Aligned_cols=73 Identities=18% Similarity=0.327 Sum_probs=65.9
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeC--C-CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEe
Q psy5142 275 GALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNV--G-EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEV 351 (410)
Q Consensus 275 g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~--g-~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~ 351 (410)
.|.|+|.|||.++-+.+|.++|-+|| .|..|++.. + ..+|||+|+++-+|+.||..- ++..++|..|.|++
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg----~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygR--dGYdydg~rLRVEf 79 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYG----RIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGR--DGYDYDGCRLRVEF 79 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhc----ceEEEEeccCCCCCCeeEEEecCccchhhhhhcc--cccccCcceEEEEe
Confidence 47899999999999999999999999 999998763 3 458999999999999999998 78999999999998
Q ss_pred cC
Q psy5142 352 VT 353 (410)
Q Consensus 352 l~ 353 (410)
..
T Consensus 80 pr 81 (241)
T KOG0105|consen 80 PR 81 (241)
T ss_pred cc
Confidence 64
No 75
>PLN03213 repressor of silencing 3; Provisional
Probab=99.04 E-value=7e-10 Score=110.09 Aligned_cols=90 Identities=13% Similarity=0.145 Sum_probs=76.1
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCH--HHHHHHHHhcCCCCc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNK--ENAEKFLNENKDKNL 194 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~--e~A~~Al~~~~g~~~ 194 (410)
....+|||+||++++|.++|+..|++| |.|.+|.|+| .+ .+|||||+|.+. .++.+||..++| .
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeF----GsVkdVEIpR--ET------GRGFAFVEMssdddaEeeKAISaLNG--A 73 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPM----GTVDAVEFVR--TK------GRSFAYIDFSPSSTNSLTKLFSTYNG--C 73 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEec--cc------CCceEEEEecCCcHHHHHHHHHHhcC--C
Confidence 445799999999999999999999999 9999999994 33 399999999987 789999999997 7
Q ss_pred cccccccchhhhhhhhcccccccccCcccccchhhhc-hHHHHHHHHHHHHhh
Q psy5142 195 KFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKW-QQEYHEEKKQEVRSK 246 (410)
Q Consensus 195 ~~~~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~-k~~~~~~k~~e~~~~ 246 (410)
.| .| +.|+|.. +..|+.+-+.|+...
T Consensus 74 EW-----------------------KG---R~LKVNKAKP~YLeRLkrEReea 100 (759)
T PLN03213 74 VW-----------------------KG---GRLRLEKAKEHYLARLKREWEAA 100 (759)
T ss_pred ee-----------------------cC---ceeEEeeccHHHHHHHHHHHHHh
Confidence 88 78 8888876 456777766666543
No 76
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.03 E-value=4.9e-10 Score=103.71 Aligned_cols=64 Identities=19% Similarity=0.230 Sum_probs=57.1
Q ss_pred ceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 119 AQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 119 ~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
-+||||+||++.+|+++|++||+.| |+|.+|+|+++. ..+++|||+|.++++|+.|+.+ +| ..+
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~----G~I~~V~I~~D~-------et~gfAfVtF~d~~aaetAllL-nG--a~l 68 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHC----GAIEHVEIIRSG-------EYACTAYVTFKDAYALETAVLL-SG--ATI 68 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhc----CCeEEEEEecCC-------CcceEEEEEECCHHHHHHHHhc-CC--Cee
Confidence 4799999999999999999999999 999999999874 4468999999999999999965 44 555
No 77
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.00 E-value=1.5e-09 Score=82.18 Aligned_cols=65 Identities=22% Similarity=0.354 Sum_probs=57.4
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC-----ceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEE
Q psy5142 278 LKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE-----PTAFVRYKKENNAEAVLKALGSKEIVIKDVKVS 348 (410)
Q Consensus 278 l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~-----~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~ 348 (410)
|+|.|||++++.++|.++|+.|| .|..|.+.... +.|||+|.++++|..|+..+ ++..++|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g----~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~--~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFG----PVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELL--NGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSS----BEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHH--TTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcC----CcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHC--CCcEECCEEcC
Confidence 68999999999999999999999 89999888763 56999999999999999999 67999999874
No 78
>KOG0113|consensus
Probab=98.98 E-value=8.7e-10 Score=103.52 Aligned_cols=70 Identities=17% Similarity=0.264 Sum_probs=65.5
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
-.-+||||.-|+++++++.|+..|+.| |+|..|+|++++-++ +++|||||+|+++-+...|.+..+| +++
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~Y----G~IkrirlV~d~vTg----kskGYAFIeye~erdm~~AYK~adG--~~I 168 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKY----GPIKRIRLVRDKVTG----KSKGYAFIEYEHERDMKAAYKDADG--IKI 168 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhc----CcceeEEEeeecccC----CccceEEEEeccHHHHHHHHHhccC--cee
Confidence 446899999999999999999999999 999999999998887 8999999999999999999999987 555
No 79
>KOG4207|consensus
Probab=98.98 E-value=1.4e-09 Score=97.19 Aligned_cols=76 Identities=22% Similarity=0.356 Sum_probs=67.7
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCeEEcCe
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE------PTAFVRYKKENNAEAVLKALGSKEIVIKDV 345 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~~i~g~ 345 (410)
...-..|+|.||...|+.++|+.+|++|| .|-.|.|+.+. ++|||+|....+|+.|+++| ++.+++|+
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG----~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~dam--DG~~ldgR 83 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYG----RVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAM--DGAVLDGR 83 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhC----cccceecccccccccccceeEEEeeecchHHHHHHhh--cceeeccc
Confidence 33446899999999999999999999999 99999888753 46999999999999999999 78999999
Q ss_pred EEEEEecC
Q psy5142 346 KVSIEVVT 353 (410)
Q Consensus 346 ~v~v~~l~ 353 (410)
.|.|.++.
T Consensus 84 elrVq~ar 91 (256)
T KOG4207|consen 84 ELRVQMAR 91 (256)
T ss_pred eeeehhhh
Confidence 99998753
No 80
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.98 E-value=2.2e-09 Score=80.50 Aligned_cols=62 Identities=34% Similarity=0.558 Sum_probs=57.8
Q ss_pred eeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 121 SLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 121 tv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
+|+|+|||..++.++|+++|+.| |.|..+.+.....+ .++|+|||+|.+.++|..|+..+++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~----g~i~~~~~~~~~~~-----~~~~~~~v~f~s~~~a~~a~~~~~~ 62 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKF----GKVESVRIVRDKDT-----KSKGFAFVEFEDEEDAEKALEALNG 62 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhc----CCEEEEEEeeCCCC-----CcceEEEEEECCHHHHHHHHHHhCC
Confidence 58999999999999999999999 99999999987665 6799999999999999999999885
No 81
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.98 E-value=3.9e-09 Score=110.62 Aligned_cols=133 Identities=14% Similarity=0.148 Sum_probs=88.8
Q ss_pred ceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccccc
Q psy5142 119 AQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFNE 198 (410)
Q Consensus 119 ~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~~ 198 (410)
.++|||+|||+++|+++|+++|++| ..|.|..|.+ .++||||+|.+.++|.+|++.+++ ..+
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f--~~G~I~rV~~------------~rgfAFVeF~s~e~A~kAi~~lnG--~~i-- 294 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEF--KPGKVERVKK------------IRDYAFVHFEDREDAVKAMDELNG--KEL-- 294 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhc--CCCceEEEEe------------ecCeEEEEeCCHHHHHHHHHHhCC--CEE--
Confidence 5789999999999999999999998 2378988864 367999999999999999999986 455
Q ss_pred cccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhh-hhccccCccCCCCCCCCCCcccccCCCCCeE
Q psy5142 199 NCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSK-RDKSKKSTEGDGEGNTEGSKQVVLELPTGAL 277 (410)
Q Consensus 199 ~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~-~~k~k~~~e~~~~~~~~~~~~~~~~~~~g~~ 277 (410)
.| +.|.|.|....... ..... .......... ++ ..........+.-..
T Consensus 295 ---------------------~G---r~I~V~~Akp~~~~---~~~~~~rg~gg~~~~~---~~-~~~~~g~~~sp~s~~ 343 (578)
T TIGR01648 295 ---------------------EG---SEIEVTLAKPVDKK---SYVRYTRGTGGRGKER---QA-ARQSLGQVYDPASRS 343 (578)
T ss_pred ---------------------CC---EEEEEEEccCCCcc---cccccccccCCCcccc---cc-cccccCcccCccccc
Confidence 66 88888764221000 00000 0000000000 00 000001122334567
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcC
Q psy5142 278 LKISDIKEPVSREDIREVLEKVQ 300 (410)
Q Consensus 278 l~v~nL~~~~t~edLk~~F~~~G 300 (410)
+++.|+++.++.+.+.++|..+|
T Consensus 344 ~~~g~~~~~~~~~~~~~~f~~~g 366 (578)
T TIGR01648 344 LAYEDYYYHPPYAPSLHFPRMPG 366 (578)
T ss_pred cccccccccccccchhhccccCc
Confidence 88999999999999999999988
No 82
>KOG0107|consensus
Probab=98.96 E-value=8.2e-10 Score=96.45 Aligned_cols=61 Identities=21% Similarity=0.307 Sum_probs=57.4
Q ss_pred ceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCC
Q psy5142 119 AQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDK 192 (410)
Q Consensus 119 ~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~ 192 (410)
.+.|||+||+..+|..||+..|..| |+|.+|.|-+ .+.|||||||+++-+|+.|+..++|+
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~y----G~lrsvWvAr---------nPPGfAFVEFed~RDA~DAvr~LDG~ 70 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKY----GPLRSVWVAR---------NPPGFAFVEFEDPRDAEDAVRYLDGK 70 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhc----CcceeEEEee---------cCCCceEEeccCcccHHHHHhhcCCc
Confidence 6889999999999999999999999 9999999976 56899999999999999999999973
No 83
>smart00362 RRM_2 RNA recognition motif.
Probab=98.96 E-value=4.7e-09 Score=78.19 Aligned_cols=66 Identities=23% Similarity=0.396 Sum_probs=60.7
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC----ceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEE
Q psy5142 278 LKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE----PTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSI 349 (410)
Q Consensus 278 l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~----~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v 349 (410)
|+|.|||..++.++|+++|.+|| .|..+.+.... +.|||+|.+.++|+.|+..+ ++..++|+.+.|
T Consensus 2 v~i~~l~~~~~~~~l~~~~~~~g----~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~--~~~~~~~~~i~v 71 (72)
T smart00362 2 LFVGNLPPDVTEEDLKELFSKFG----PIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEAL--NGTKLGGRPLRV 71 (72)
T ss_pred EEEcCCCCcCCHHHHHHHHHhcC----CEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHh--CCcEECCEEEee
Confidence 78999999999999999999999 99999888776 78999999999999999999 568889988876
No 84
>smart00360 RRM RNA recognition motif.
Probab=98.95 E-value=2.4e-09 Score=79.48 Aligned_cols=60 Identities=33% Similarity=0.482 Sum_probs=54.8
Q ss_pred eecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 124 VKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 124 V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
|+|||..++.++|+.+|++| |.|..+.+++...++ .++|+|||+|.+.++|..|+..+++
T Consensus 1 i~~l~~~~~~~~l~~~f~~~----g~v~~~~i~~~~~~~----~~~~~a~v~f~~~~~a~~a~~~~~~ 60 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKF----GKIESVRLVRDKDTG----KSKGFAFVEFESEEDAEKALEALNG 60 (71)
T ss_pred CCCCCcccCHHHHHHHHHhh----CCEeEEEEEeCCCCC----CCCceEEEEeCCHHHHHHHHHHcCC
Confidence 57999999999999999999 999999998876543 7899999999999999999999884
No 85
>KOG4207|consensus
Probab=98.94 E-value=9.6e-10 Score=98.29 Aligned_cols=68 Identities=22% Similarity=0.352 Sum_probs=64.1
Q ss_pred ceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 119 AQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 119 ~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
..+|.|-||-+-+|.++|+.+|++| |.|.+|.|+++.-++ .++|||||-|....+|+.|++.++| ..+
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekY----G~vgDVyIPrdr~Tr----~sRgFaFVrf~~k~daedA~damDG--~~l 80 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKY----GRVGDVYIPRDRYTR----QSRGFAFVRFHDKRDAEDALDAMDG--AVL 80 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHh----Ccccceecccccccc----cccceeEEEeeecchHHHHHHhhcc--eee
Confidence 5689999999999999999999999 999999999999886 8999999999999999999999997 555
No 86
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.91 E-value=6.5e-09 Score=97.74 Aligned_cols=72 Identities=25% Similarity=0.383 Sum_probs=65.0
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC---ceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEe
Q psy5142 275 GALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE---PTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEV 351 (410)
Q Consensus 275 g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~---~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~ 351 (410)
...|||.|||+.+++++|+++|+.|| .|..|++..+. ++|||.|.++++|+.||. | ++..|.|+.|+|..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G----~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-L--nG~~l~gr~V~Vt~ 76 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSG----DIEYVEMQSENERSQIAYVTFKDPQGAETALL-L--SGATIVDQSVTITP 76 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC----CeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-h--cCCeeCCceEEEEe
Confidence 35899999999999999999999999 99999998653 579999999999999995 7 57899999999998
Q ss_pred cC
Q psy5142 352 VT 353 (410)
Q Consensus 352 l~ 353 (410)
..
T Consensus 77 a~ 78 (260)
T PLN03120 77 AE 78 (260)
T ss_pred cc
Confidence 64
No 87
>KOG0114|consensus
Probab=98.90 E-value=6.1e-09 Score=83.44 Aligned_cols=62 Identities=24% Similarity=0.453 Sum_probs=57.1
Q ss_pred ceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 119 AQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 119 ~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
.|.|||.|||+++|.++.-++|..| |.|..|++=..+. -+|.|||.|++..+|.+|++.+.|
T Consensus 18 nriLyirNLp~~ITseemydlFGky----g~IrQIRiG~~k~-------TrGTAFVVYedi~dAk~A~dhlsg 79 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKY----GTIRQIRIGNTKE-------TRGTAFVVYEDIFDAKKACDHLSG 79 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcc----cceEEEEecCccC-------cCceEEEEehHhhhHHHHHHHhcc
Confidence 5899999999999999999999999 9999999865444 489999999999999999999986
No 88
>KOG0126|consensus
Probab=98.89 E-value=7e-11 Score=103.55 Aligned_cols=70 Identities=19% Similarity=0.263 Sum_probs=65.3
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
.+.-=|||+|||++.|+.||...||+| |+|++|.|.|++.|| +++||||..|++.-+..-|+..++| +++
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqy----Ge~vdinLiRDk~TG----KSKGFaFLcYEDQRSTILAVDN~NG--iki 102 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQY----GEIVDINLIRDKKTG----KSKGFAFLCYEDQRSTILAVDNLNG--IKI 102 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeecc----CceEEEEEEecCCCC----cccceEEEEecCccceEEEEeccCC--cee
Confidence 345679999999999999999999999 999999999999998 9999999999999999999999997 666
No 89
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.88 E-value=1.2e-08 Score=94.46 Aligned_cols=75 Identities=20% Similarity=0.307 Sum_probs=66.8
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC---ceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEE
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE---PTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSI 349 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~---~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v 349 (410)
+.|.+|+|.||++.+|+++|+++|+.|| .|..|.+.++. .+|||+|.++++|+.|+ .| ++.+|.++.|.|
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G----~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lL--nGa~l~d~~I~I 75 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCG----AIEHVEIIRSGEYACTAYVTFKDAYALETAV-LL--SGATIVDQRVCI 75 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcC----CeEEEEEecCCCcceEEEEEECCHHHHHHHH-hc--CCCeeCCceEEE
Confidence 4578999999999999999999999999 99999998764 36999999999999999 56 578999999999
Q ss_pred EecCc
Q psy5142 350 EVVTG 354 (410)
Q Consensus 350 ~~l~g 354 (410)
.....
T Consensus 76 t~~~~ 80 (243)
T PLN03121 76 TRWGQ 80 (243)
T ss_pred EeCcc
Confidence 87663
No 90
>PLN03213 repressor of silencing 3; Provisional
Probab=98.87 E-value=2.2e-08 Score=99.68 Aligned_cols=90 Identities=19% Similarity=0.325 Sum_probs=78.9
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeC--CCceEEEEeCCh--hHHHHHHHHhcCCCeEEcCeEE
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNV--GEPTAFVRYKKE--NNAEAVLKALGSKEIVIKDVKV 347 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~--g~~~afV~F~~~--e~A~~Al~~l~~~~~~i~g~~v 347 (410)
...+..|||.||+++++++||+.+|+.|| .|..|.+++ |+++|||.|.+. .++.+||..| ++..+.|+.|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFG----sVkdVEIpRETGRGFAFVEMssdddaEeeKAISaL--NGAEWKGR~L 80 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMG----TVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTY--NGCVWKGGRL 80 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcC----CeeEEEEecccCCceEEEEecCCcHHHHHHHHHHh--cCCeecCcee
Confidence 35568999999999999999999999999 999999985 567899999987 6799999999 7899999999
Q ss_pred EEEecCchHHHHHHHHhHHHHHHH
Q psy5142 348 SIEVVTGEEEQTVLDRMKIDIFKR 371 (410)
Q Consensus 348 ~v~~l~g~eE~~yw~k~~~~~~~~ 371 (410)
+|..+. ..|+.++..+++..
T Consensus 81 KVNKAK----P~YLeRLkrEReea 100 (759)
T PLN03213 81 RLEKAK----EHYLARLKREWEAA 100 (759)
T ss_pred EEeecc----HHHHHHHHHHHHHh
Confidence 999875 67888888776654
No 91
>KOG0125|consensus
Probab=98.86 E-value=2.6e-09 Score=101.52 Aligned_cols=65 Identities=25% Similarity=0.267 Sum_probs=60.3
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
-..+.|||+|+|+..-+.||+.+|.+| |.|.+|.|+-+.. .+|||+||+|++.+||++|-+.++|
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kf----G~VldVEIIfNER------GSKGFGFVTmen~~dadRARa~LHg 158 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKF----GKVLDVEIIFNER------GSKGFGFVTMENPADADRARAELHG 158 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhh----CceeeEEEEeccC------CCCccceEEecChhhHHHHHHHhhc
Confidence 446899999999999999999999999 9999999987655 4899999999999999999999997
No 92
>KOG1365|consensus
Probab=98.84 E-value=3.8e-08 Score=95.32 Aligned_cols=195 Identities=18% Similarity=0.238 Sum_probs=120.2
Q ss_pred ceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccccc
Q psy5142 119 AQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFNE 198 (410)
Q Consensus 119 ~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~~ 198 (410)
.-.|.+++||+++|..++.+||.+-+-.-|-++.|...+..++ +..|-|||.|.++++|+.||.... ..+
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdg-----rpTGdAFvlfa~ee~aq~aL~khr---q~i-- 230 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDG-----RPTGDAFVLFACEEDAQFALRKHR---QNI-- 230 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCC-----CcccceEEEecCHHHHHHHHHHHH---HHH--
Confidence 3456778999999999999999754221245556666666666 789999999999999999998754 222
Q ss_pred cccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCC-C--CcccccCCCCC
Q psy5142 199 NCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTE-G--SKQVVLELPTG 275 (410)
Q Consensus 199 ~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~-~--~~~~~~~~~~g 275 (410)
|-...+|....+.+|..--+.+....- -...+... . -....+...+.
T Consensus 231 ----------------------GqRYIElFRSTaaEvqqvlnr~~s~pL--------i~~~~sp~~p~~p~~~~p~~~~k 280 (508)
T KOG1365|consen 231 ----------------------GQRYIELFRSTAAEVQQVLNREVSEPL--------IPGLTSPLLPGGPARLVPPTRSK 280 (508)
T ss_pred ----------------------hHHHHHHHHHhHHHHHHHHHhhccccc--------cCCCCCCCCCCCccccCCCCCCC
Confidence 100012222222222221111110000 00000000 0 00001112223
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeE--EEeeC---C--CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEE
Q psy5142 276 ALLKISDIKEPVSREDIREVLEKVQTDDQEIVF--IEFNV---G--EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVS 348 (410)
Q Consensus 276 ~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~--V~~~~---g--~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~ 348 (410)
-+|.++|||...+.|||-++|..|-+ .|.+ |.+.- | .+.|||+|.+++.|..|.... ++.....+.|+
T Consensus 281 dcvRLRGLPy~AtvEdIL~FlgdFa~---~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~--hk~~mk~RYiE 355 (508)
T KOG1365|consen 281 DCVRLRGLPYEATVEDILDFLGDFAT---DIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKC--HKKLMKSRYIE 355 (508)
T ss_pred CeeEecCCChhhhHHHHHHHHHHHhh---hcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHH--HHhhcccceEE
Confidence 46889999999999999999999873 4444 44442 3 245999999999999998887 45555788888
Q ss_pred EEecCchHHH
Q psy5142 349 IEVVTGEEEQ 358 (410)
Q Consensus 349 v~~l~g~eE~ 358 (410)
|-..++||=.
T Consensus 356 vfp~S~eeln 365 (508)
T KOG1365|consen 356 VFPCSVEELN 365 (508)
T ss_pred EeeccHHHHH
Confidence 8877765544
No 93
>KOG0108|consensus
Probab=98.82 E-value=5.5e-09 Score=105.73 Aligned_cols=80 Identities=20% Similarity=0.324 Sum_probs=74.2
Q ss_pred eeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcccccc
Q psy5142 120 QSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFNEN 199 (410)
Q Consensus 120 rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~~~ 199 (410)
++|||+|+|+++++++|..+|+.. |.|.++++..|..++ +++||+|++|.+.++|..|++.++| ..+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~----g~v~s~~~v~D~~tG----~~~G~~f~~~~~~~~~~~a~~~lNg--~~~--- 85 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGV----GPVLSFRLVYDRETG----KPKGFGFCEFTDEETAERAIRNLNG--AEF--- 85 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhcc----CccceeeecccccCC----CcCceeeEecCchhhHHHHHHhcCC--ccc---
Confidence 899999999999999999999999 999999999999987 9999999999999999999999997 566
Q ss_pred ccchhhhhhhhcccccccccCcccccchhhhchHHH
Q psy5142 200 CEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEY 235 (410)
Q Consensus 200 ~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~ 235 (410)
.| +.|+|.|+..+
T Consensus 86 --------------------~g---r~l~v~~~~~~ 98 (435)
T KOG0108|consen 86 --------------------NG---RKLRVNYASNR 98 (435)
T ss_pred --------------------CC---ceEEeeccccc
Confidence 77 89998876543
No 94
>smart00360 RRM RNA recognition motif.
Probab=98.77 E-value=3.1e-08 Score=73.36 Aligned_cols=64 Identities=23% Similarity=0.420 Sum_probs=56.7
Q ss_pred EeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEE
Q psy5142 280 ISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE------PTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSI 349 (410)
Q Consensus 280 v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v 349 (410)
|.|||..+++++|+++|++|| .|..+.+.... +.|||+|.+.++|..|+..+ ++..++|+.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g----~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~--~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFG----KIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEAL--NGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhC----CEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHc--CCCeeCCcEEEe
Confidence 468999999999999999999 99998887654 37999999999999999999 568889988876
No 95
>KOG0130|consensus
Probab=98.75 E-value=1.5e-08 Score=84.86 Aligned_cols=67 Identities=21% Similarity=0.257 Sum_probs=63.2
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
+.-..|||.++...+|+++|.+.|..| |+|.+|+|-.+..++ -.+|||.|+|++.++|++|+..+||
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dy----GeiKNihLNLDRRtG----y~KGYaLvEYet~keAq~A~~~~Ng 136 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADY----GEIKNIHLNLDRRTG----YVKGYALVEYETLKEAQAAIDALNG 136 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhc----ccccceeeccccccc----cccceeeeehHhHHHHHHHHHhccc
Confidence 556789999999999999999999999 999999999988886 7899999999999999999999997
No 96
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.74 E-value=8.3e-08 Score=71.75 Aligned_cols=67 Identities=25% Similarity=0.416 Sum_probs=60.2
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC-----CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEE
Q psy5142 278 LKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG-----EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIE 350 (410)
Q Consensus 278 l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g-----~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~ 350 (410)
|+|.|||..+++++|+++|+.+| .|..+.+... .+.|||+|.+.++|..|+..+ ++..++|+.+.|.
T Consensus 2 i~i~~l~~~~~~~~i~~~~~~~g----~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~--~~~~~~~~~~~v~ 73 (74)
T cd00590 2 LFVGNLPPDVTEEDLRELFSKFG----KVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEAL--NGKELGGRPLRVE 73 (74)
T ss_pred EEEeCCCCccCHHHHHHHHHhcC----CEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHh--CCCeECCeEEEEe
Confidence 78999999999999999999999 9988888865 357999999999999999999 5677899998875
No 97
>KOG0111|consensus
Probab=98.74 E-value=3.9e-09 Score=95.19 Aligned_cols=67 Identities=21% Similarity=0.247 Sum_probs=63.2
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
...|||||++|..++|+.-|.+.|-+| |.|..|.||.+..++ +++||+||+|.-.|+|..|+..+++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPF----GDI~dIqiPlDyesq----kHRgFgFVefe~aEDAaaAiDNMne 74 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPF----GDIKDIQIPLDYESQ----KHRGFGFVEFEEAEDAAAAIDNMNE 74 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccc----cchhhcccccchhcc----cccceeEEEeeccchhHHHhhcCch
Confidence 457999999999999999999999999 999999999998776 8999999999999999999999985
No 98
>KOG1190|consensus
Probab=98.70 E-value=8.7e-08 Score=93.61 Aligned_cols=175 Identities=18% Similarity=0.152 Sum_probs=106.7
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFN 197 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~ 197 (410)
..+-|.+++||+++|+++|.+++.+| |.|+++.|.+. +..||++|.+.++|...+.......-.+
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pF----G~vtn~~~lkG----------knQAflem~d~~sAvtmv~~y~~~~p~l- 91 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPF----GKVTNLLMLKG----------KNQAFLEMADEESAVTMVNYYTSVTPVL- 91 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccc----cceeeeeeecc----------chhhhhhhcchhhhhheeecccccCccc-
Confidence 46789999999999999999999999 99999998753 4469999999999887554433100011
Q ss_pred ccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHH-----HHHh--hhhccccCccCC-CCCCCCCCcccc
Q psy5142 198 ENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQ-----EVRS--KRDKSKKSTEGD-GEGNTEGSKQVV 269 (410)
Q Consensus 198 ~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~-----e~~~--~~~k~k~~~e~~-~~~~~~~~~~~~ 269 (410)
.| .++.+... .+...+.. .+.. ...-+. ..+.. ..++........
T Consensus 92 ----------------------r~---~~~yiq~s-n~~~lkt~s~p~q~r~~~vy~~~s~-~q~~~~~~s~~~~~~G~~ 144 (492)
T KOG1190|consen 92 ----------------------RG---QPIYIQYS-NHSELKTDSQPNQIRGQAVYQAVSS-VQEIVLPLSASAVVVGNE 144 (492)
T ss_pred ----------------------cC---cceeehhh-hHHHHhccCchhhhhhhhHHhhhhc-cccccccccccccccccc
Confidence 22 44443321 00000000 0000 000000 00000 000000000000
Q ss_pred cCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeE-EEeeCCCce-EEEEeCChhHHHHHHHHhcCC
Q psy5142 270 LELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVF-IEFNVGEPT-AFVRYKKENNAEAVLKALGSK 338 (410)
Q Consensus 270 ~~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~-V~~~~g~~~-afV~F~~~e~A~~Al~~l~~~ 338 (410)
..-.+-.++.|.++-..+|-+-|..+|++|| -|.. |.|.+..++ |.|+|.+++.|+.|-.+|++.
T Consensus 145 ~~~n~vLr~iie~m~ypVslDVLHqvFS~fG----~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGq 211 (492)
T KOG1190|consen 145 DGPNPVLRTIIENMFYPVSLDVLHQVFSKFG----FVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQ 211 (492)
T ss_pred CCCceeEEEEeccceeeeEHHHHHHHHhhcc----eeEEEEEEecccchhhhhhccchhhHHHHHHhccCC
Confidence 1111224566778989999999999999999 7744 567777665 999999999999999999543
No 99
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=8e-09 Score=100.70 Aligned_cols=61 Identities=38% Similarity=0.560 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCChhHHhhhccCCCeEehHHHHhhHHHHhccCcHHHHHHHHhh
Q psy5142 22 LENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDALKK 83 (410)
Q Consensus 22 ~~~~i~~QlEfYfsd~Nl~~D~fl~~~~~~~~g~v~l~~l~~F~r~k~l~~d~~~i~~Al~~ 83 (410)
.+..+..|||||||-.||..|.||+.+++++ ||||++.|.+|.|...+..|..+|..||+.
T Consensus 270 sI~a~k~QiEyYFseenl~~d~~lrkk~~ka-Gf~plsfi~kf~Rn~Sf~gd~nLilaa~ke 330 (438)
T COG5193 270 SIMAKKEQIEYYFSEENLKSDEFLRKKFKKA-GFIPLSFIGKFYRNLSFGGDKNLILAAMKE 330 (438)
T ss_pred ehhhHHhhhHhhhhHHhhhhhhHHHhhhhhc-ccccHhhhhhhhhccccCCchhhhHHHHHH
Confidence 3556777999999999999999999999987 999999999999999999999999999994
No 100
>KOG0121|consensus
Probab=98.67 E-value=7.9e-08 Score=80.00 Aligned_cols=76 Identities=20% Similarity=0.309 Sum_probs=66.0
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCeEEcCeE
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE------PTAFVRYKKENNAEAVLKALGSKEIVIKDVK 346 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~ 346 (410)
...|+|+|.||+.-|++|+|.++|+++| +|..|-+--+. ++|||.|-+.++|+.|+.-+ +++.++.++
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG----~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryi--sgtrLddr~ 107 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCG----DIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYI--SGTRLDDRP 107 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhcc----chheeEeccccCCcCccceEEEEEecchhHHHHHHHh--ccCcccccc
Confidence 4457999999999999999999999999 99988765432 35999999999999999999 678999999
Q ss_pred EEEEecCc
Q psy5142 347 VSIEVVTG 354 (410)
Q Consensus 347 v~v~~l~g 354 (410)
|.+..=-|
T Consensus 108 ir~D~D~G 115 (153)
T KOG0121|consen 108 IRIDWDAG 115 (153)
T ss_pred eeeecccc
Confidence 99986543
No 101
>KOG0125|consensus
Probab=98.64 E-value=9.9e-08 Score=90.94 Aligned_cols=74 Identities=22% Similarity=0.336 Sum_probs=66.8
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeC---C-CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEE
Q psy5142 275 GALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNV---G-EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIE 350 (410)
Q Consensus 275 g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~---g-~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~ 350 (410)
...|+|.|||+..-+.||+.+|.+|| .|..|.|.- | +++|||.|++.++|++|-++| ++.+|.|++|+|.
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG----~VldVEIIfNERGSKGFGFVTmen~~dadRARa~L--Hgt~VEGRkIEVn 169 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFG----KVLDVEIIFNERGSKGFGFVTMENPADADRARAEL--HGTVVEGRKIEVN 169 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhC----ceeeEEEEeccCCCCccceEEecChhhHHHHHHHh--hcceeeceEEEEe
Confidence 45899999999999999999999999 888888763 3 457999999999999999999 8899999999999
Q ss_pred ecCc
Q psy5142 351 VVTG 354 (410)
Q Consensus 351 ~l~g 354 (410)
.++.
T Consensus 170 ~ATa 173 (376)
T KOG0125|consen 170 NATA 173 (376)
T ss_pred ccch
Confidence 8764
No 102
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.64 E-value=1.8e-07 Score=67.82 Aligned_cols=54 Identities=15% Similarity=0.238 Sum_probs=49.0
Q ss_pred HHHHHHhcCCCCCCeeEEEeeCCC-ceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEe
Q psy5142 292 IREVLEKVQTDDQEIVFIEFNVGE-PTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEV 351 (410)
Q Consensus 292 Lk~~F~~~G~~~~~V~~V~~~~g~-~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~ 351 (410)
|+++|++|| .|..|.+.+.. ..|||+|.+.++|+.|+..| ++..++|+.|+|..
T Consensus 1 L~~~f~~fG----~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l--~~~~~~g~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFG----EVKKIKIFKKKRGFAFVEFASVEDAQKAIEQL--NGRQFNGRPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-----EEEEEEETTSTTEEEEEESSHHHHHHHHHHH--TTSEETTEEEEEEE
T ss_pred ChHHhCCcc----cEEEEEEEeCCCCEEEEEECCHHHHHHHHHHh--CCCEECCcEEEEEE
Confidence 688999999 99999999887 88999999999999999999 67889999999875
No 103
>KOG0114|consensus
Probab=98.64 E-value=4e-07 Score=73.15 Aligned_cols=79 Identities=18% Similarity=0.225 Sum_probs=68.4
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC---CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEE
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG---EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSI 349 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g---~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v 349 (410)
.-+.+|||.|||..+|.|+..++|++|| .|.-|++.-. .++|||.|++-.+|++|++.| .+..+.++.+.|
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg----~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhl--sg~n~~~ryl~v 89 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYG----TIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHL--SGYNVDNRYLVV 89 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhccc----ceEEEEecCccCcCceEEEEehHhhhHHHHHHHh--cccccCCceEEE
Confidence 4467999999999999999999999999 9999888643 357999999999999999999 788999999888
Q ss_pred EecCchHH
Q psy5142 350 EVVTGEEE 357 (410)
Q Consensus 350 ~~l~g~eE 357 (410)
-..+.+.+
T Consensus 90 lyyq~~~~ 97 (124)
T KOG0114|consen 90 LYYQPEDA 97 (124)
T ss_pred EecCHHHH
Confidence 76664443
No 104
>KOG4212|consensus
Probab=98.61 E-value=7e-08 Score=94.87 Aligned_cols=74 Identities=9% Similarity=0.244 Sum_probs=67.6
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEee-CCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEE
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFN-VGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIE 350 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~-~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~ 350 (410)
..+-|.|+|+|||+++||+.|++-|..|| .|.|+|+. .|+..+.|+|.++++|+.|+..| ++..++|+.|+|+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G----~v~yadime~GkskGVVrF~s~edAEra~a~M--ngs~l~Gr~I~V~ 606 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIG----HVLYADIMENGKSKGVVRFFSPEDAERACALM--NGSRLDGRNIKVT 606 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhcc----ceehhhhhccCCccceEEecCHHHHHHHHHHh--ccCcccCceeeee
Confidence 45568999999999999999999999999 99999984 57778999999999999999999 6789999999987
Q ss_pred e
Q psy5142 351 V 351 (410)
Q Consensus 351 ~ 351 (410)
+
T Consensus 607 y 607 (608)
T KOG4212|consen 607 Y 607 (608)
T ss_pred e
Confidence 5
No 105
>KOG0116|consensus
Probab=98.61 E-value=8.3e-08 Score=96.69 Aligned_cols=70 Identities=17% Similarity=0.289 Sum_probs=59.7
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeC----CC--ceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEE
Q psy5142 275 GALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNV----GE--PTAFVRYKKENNAEAVLKALGSKEIVIKDVKVS 348 (410)
Q Consensus 275 g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~----g~--~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~ 348 (410)
+..|||.|||.+++...|+++|++|| .|+...|.. +. .+|||.|.+.++++.||.+- .+.|+++.|.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG----~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As---p~~ig~~kl~ 360 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFG----PIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS---PLEIGGRKLN 360 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcc----cccccceEEeccCCCcCceEEEEEeecchhhhhhhcC---ccccCCeeEE
Confidence 44599999999999999999999999 786655543 22 57999999999999999885 8999999999
Q ss_pred EEe
Q psy5142 349 IEV 351 (410)
Q Consensus 349 v~~ 351 (410)
|+-
T Consensus 361 Vee 363 (419)
T KOG0116|consen 361 VEE 363 (419)
T ss_pred EEe
Confidence 874
No 106
>smart00361 RRM_1 RNA recognition motif.
Probab=98.60 E-value=9.7e-08 Score=72.71 Aligned_cols=51 Identities=16% Similarity=0.232 Sum_probs=43.4
Q ss_pred HHHHHHHHh----hccCCCCceEEEE-EcccCcc--cccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 133 LDDIKDFFK----KNTSEDVKITNII-MRNYQDK--LANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 133 ~~~L~~~F~----~~~~~~G~I~~v~-l~~~~~~--~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
+++|+++|+ .| |.|.+|. +..+..+ + .++|++||+|.+.++|.+|+..++|
T Consensus 2 ~~~l~~~~~~~~~~f----G~v~~v~~v~~~~~~~~~----~~rG~~fV~f~~~~dA~~A~~~l~g 59 (70)
T smart00361 2 DEDFEREFSEEEEYF----GEVGKINKIYIDNVGYEN----HKRGNVYITFERSEDAARAIVDLNG 59 (70)
T ss_pred chhHHHHHHHHHHhc----CCeeEEEEEEeCCCCCCC----CCcEEEEEEECCHHHHHHHHHHhCC
Confidence 578999998 99 9999995 5554433 3 7899999999999999999999997
No 107
>KOG0113|consensus
Probab=98.60 E-value=2.2e-07 Score=87.65 Aligned_cols=77 Identities=22% Similarity=0.279 Sum_probs=68.5
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCe
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDV 345 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~ 345 (410)
..+=++|||.-|+.+|++..|+..|+.|| .|+.|.++.+ .++|||.|+++-+...|.+.. ++++|+|+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG----~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~a--dG~~Idgr 171 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYG----PIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDA--DGIKIDGR 171 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcC----cceeEEEeeecccCCccceEEEEeccHHHHHHHHHhc--cCceecCc
Confidence 35668999999999999999999999999 9999988764 357999999999999999998 78999999
Q ss_pred EEEEEecCc
Q psy5142 346 KVSIEVVTG 354 (410)
Q Consensus 346 ~v~v~~l~g 354 (410)
.|.|.+=-|
T Consensus 172 ri~VDvERg 180 (335)
T KOG0113|consen 172 RILVDVERG 180 (335)
T ss_pred EEEEEeccc
Confidence 999987443
No 108
>KOG0122|consensus
Probab=98.59 E-value=1.5e-07 Score=86.42 Aligned_cols=74 Identities=15% Similarity=0.309 Sum_probs=63.9
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCeEEcCeEE
Q psy5142 274 TGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE------PTAFVRYKKENNAEAVLKALGSKEIVIKDVKV 347 (410)
Q Consensus 274 ~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v 347 (410)
..+.|.|.||++++++++|.++|.+|| .|..|.+.+++ ++|||.|.+.++|.+||..| +|+=+++-.|
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg----~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~L--nG~gyd~LIL 261 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFG----PITRVYLARDKETGLSKGFAFVTFESRDDAARAIADL--NGYGYDNLIL 261 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccC----ccceeEEEEccccCcccceEEEEEecHHHHHHHHHHc--cCcccceEEE
Confidence 457899999999999999999999999 99888887654 46999999999999999999 5666777788
Q ss_pred EEEecC
Q psy5142 348 SIEVVT 353 (410)
Q Consensus 348 ~v~~l~ 353 (410)
.|+...
T Consensus 262 rvEwsk 267 (270)
T KOG0122|consen 262 RVEWSK 267 (270)
T ss_pred EEEecC
Confidence 877644
No 109
>KOG1190|consensus
Probab=98.58 E-value=5.1e-07 Score=88.34 Aligned_cols=188 Identities=16% Similarity=0.202 Sum_probs=118.3
Q ss_pred ceeeEeecCCC-CCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcccc
Q psy5142 119 AQSLYVKYIPV-DATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFN 197 (410)
Q Consensus 119 ~rtv~V~~lp~-~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~ 197 (410)
...|.|.||.. .+|.+-|-.+|+-| |.|..|.|...+ +-.|.|.+.+...|+-|+..++| .+|-
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvY----GdVqRVkil~nk---------kd~ALIQmsd~~qAqLA~~hL~g--~~l~ 361 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVY----GDVQRVKILYNK---------KDNALIQMSDGQQAQLAMEHLEG--HKLY 361 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhh----cceEEEEeeecC---------CcceeeeecchhHHHHHHHHhhc--ceec
Confidence 36788899875 49999999999999 999999998743 35699999999999999999997 5662
Q ss_pred ccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCCeE
Q psy5142 198 ENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGAL 277 (410)
Q Consensus 198 ~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g~~ 277 (410)
+..++....|-++-..++ +|...+.|... |.... ....+++ ....-..-+|+-.+
T Consensus 362 gk~lrvt~SKH~~vqlp~----egq~d~glT~d----y~~sp------Lhrfkkp-----------gsKN~~ni~Ppsat 416 (492)
T KOG1190|consen 362 GKKLRVTLSKHTNVQLPR----EGQEDQGLTKD----YGNSP------LHRFKKP-----------GSKNYQNIFPPSAT 416 (492)
T ss_pred CceEEEeeccCccccCCC----CCCcccccccc----CCCCc------hhhccCc-----------ccccccccCCchhh
Confidence 211222211111111111 00000000000 00000 0000000 00111123577789
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcCCCCCCee-EEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCe-EEEEEe
Q psy5142 278 LKISDIKEPVSREDIREVLEKVQTDDQEIV-FIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDV-KVSIEV 351 (410)
Q Consensus 278 l~v~nL~~~~t~edLk~~F~~~G~~~~~V~-~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~-~v~v~~ 351 (410)
|++.|+|..+++|+|+..|..-| ..|. +.-+..+...|.+.+.+.+.|-.|+-.+ +...+++. -++|+.
T Consensus 417 lHlsnip~svsee~lk~~f~~~g---~~vkafkff~kd~kmal~q~~sveeA~~ali~~--hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 417 LHLSNIPPSVSEEDLKNLFQEPG---GQVKAFKFFQKDRKMALPQLESVEEAIQALIDL--HNHYLGENHHLRVSF 487 (492)
T ss_pred eeeccCCcccchhHHHHhhhcCC---ceEEeeeecCCCcceeecccCChhHhhhhcccc--ccccCCCCceEEEEe
Confidence 99999999999999999999988 2343 3344556678999999999998888888 44555543 555553
No 110
>KOG0124|consensus
Probab=98.55 E-value=2.6e-06 Score=82.31 Aligned_cols=105 Identities=17% Similarity=0.181 Sum_probs=75.5
Q ss_pred HHHHHHhhcCCceEEEecCccceecCCCCCC--CCCchhhhhhccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEE
Q psy5142 76 VIVDALKKSTSKLIEVNEDGTKIRRNPEKEL--PTFDIDFVKDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNI 153 (410)
Q Consensus 76 ~i~~Al~~~~S~~levsed~~~vrR~~~~p~--p~~~~~~~~~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v 153 (410)
...-||.+ -+..-+-.-+.+|.|-...|- |--+.....-..-..|||..+..+.+++||+..|+-| |+|..+
T Consensus 167 aAqLAlEq--MNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAF----G~I~~C 240 (544)
T KOG0124|consen 167 AAQLALEQ--MNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAF----GEIVKC 240 (544)
T ss_pred HHHHHHHH--hccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhh----cceeeE
Confidence 34445553 223334444556666532221 1112222233456789999999999999999999999 999999
Q ss_pred EEcccCcccccccccccEEEEEecCHHHHHHHHHhcC
Q psy5142 154 IMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENK 190 (410)
Q Consensus 154 ~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~ 190 (410)
.+.+.+.+. .++||+|+||.+..+...|+..+|
T Consensus 241 ~LAr~pt~~----~HkGyGfiEy~n~qs~~eAiasMN 273 (544)
T KOG0124|consen 241 QLARAPTGR----GHKGYGFIEYNNLQSQSEAIASMN 273 (544)
T ss_pred EeeccCCCC----CccceeeEEeccccchHHHhhhcc
Confidence 999988875 899999999999998888888876
No 111
>KOG2590|consensus
Probab=98.54 E-value=1.8e-08 Score=101.64 Aligned_cols=68 Identities=34% Similarity=0.599 Sum_probs=59.8
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCCChhHHhhhccCCCeEehHHHHhhHHHHhccCcHHHHHHHHhhcCCceEEEec
Q psy5142 18 EVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDALKKSTSKLIEVNE 93 (410)
Q Consensus 18 ~~~~~~~~i~~QlEfYfsd~Nl~~D~fl~~~~~~~~g~v~l~~l~~F~r~k~l~~d~~~i~~Al~~~~S~~levse 93 (410)
++-...+.|.+|||||||-+||.+|.|+++ |||||.+|++|+||..|+.|+++|.+||+ .+.+|++..
T Consensus 296 pi~~~~~~~~~~ie~~FSeE~~~~d~~n~~------k~~~l~~ia~F~r~ad~s~d~nli~~alr--~s~ive~~~ 363 (448)
T KOG2590|consen 296 PIGNVIAFIQEPIEFYFSEENLQRDRFNRE------KFVPLRVIAKFKRVADLSSDINLILAALR--NSLIVEETG 363 (448)
T ss_pred cccccccccccccccccchHHHhhhhhhhc------ccchhhhhhhhhhhhhcccCHHHHHHHHh--hhhhhhccc
Confidence 445567789999999999999999999986 88999999999999999999999999999 666666553
No 112
>KOG0120|consensus
Probab=98.52 E-value=2.8e-07 Score=94.17 Aligned_cols=183 Identities=10% Similarity=0.152 Sum_probs=121.7
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFN 197 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~ 197 (410)
....+||++||...+.+++.++...| |.+....+..+..++ .++||||.+|.++-....|++.++| +.+
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~f----g~lk~f~lv~d~~~g----~skg~af~ey~dpsvtd~A~agLnG--m~l- 356 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSF----GPLKAFRLVKDSATG----NSKGFAFCEYCDPSVTDQAIAGLNG--MQL- 356 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhc----ccchhheeecccccc----cccceeeeeeeCCcchhhhhcccch--hhh-
Confidence 45678999999999999999999999 999999999888765 7899999999999999999999997 334
Q ss_pred ccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCC-CCcccccCCCCCe
Q psy5142 198 ENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTE-GSKQVVLELPTGA 276 (410)
Q Consensus 198 ~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~-~~~~~~~~~~~g~ 276 (410)
.+ ..|.+... +...+.. +.... ..+.+... ..........+-.
T Consensus 357 ----------------------gd---~~lvvq~A--~~g~~~~----~~~~~-----~~~~~~~~i~~~~~q~~g~~t~ 400 (500)
T KOG0120|consen 357 ----------------------GD---KKLVVQRA--IVGASNA----NVNFN-----ISQSQVPGIPLLMTQMAGIPTE 400 (500)
T ss_pred ----------------------cC---ceeEeehh--hccchhc----cccCC-----ccccccccchhhhcccCCCcch
Confidence 33 44444311 1000000 00000 00000000 0000011122333
Q ss_pred EEEEeCC--CCCC-C-------HHHHHHHHHhcCCCCCCeeEEEeeCC---------CceEEEEeCChhHHHHHHHHhcC
Q psy5142 277 LLKISDI--KEPV-S-------REDIREVLEKVQTDDQEIVFIEFNVG---------EPTAFVRYKKENNAEAVLKALGS 337 (410)
Q Consensus 277 ~l~v~nL--~~~~-t-------~edLk~~F~~~G~~~~~V~~V~~~~g---------~~~afV~F~~~e~A~~Al~~l~~ 337 (410)
+|.+.|+ |.+. . -|+++.-|++|| .|..|.+++. .+.-||+|.+.++++.|.++|
T Consensus 401 Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g----~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L-- 474 (500)
T KOG0120|consen 401 VLCLTNVVTPDELKDDEEYEEILEDVRTECAKFG----AVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEEL-- 474 (500)
T ss_pred hhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccC----ceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHc--
Confidence 4444441 2222 1 256666788899 8888887764 234699999999999999999
Q ss_pred CCeEEcCeEEEEEecC
Q psy5142 338 KEIVIKDVKVSIEVVT 353 (410)
Q Consensus 338 ~~~~i~g~~v~v~~l~ 353 (410)
+|.+++|+.|...-..
T Consensus 475 ~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 475 TGRKFANRTVVASYYD 490 (500)
T ss_pred cCceeCCcEEEEEecC
Confidence 8899999999887654
No 113
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.49 E-value=2.8e-07 Score=66.80 Aligned_cols=46 Identities=24% Similarity=0.372 Sum_probs=39.0
Q ss_pred HHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 136 IKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 136 L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
|.++|++| |+|..|.+.+. .+++|||+|.+.++|++|++.++| ..|
T Consensus 1 L~~~f~~f----G~V~~i~~~~~---------~~~~a~V~f~~~~~A~~a~~~l~~--~~~ 46 (56)
T PF13893_consen 1 LYKLFSKF----GEVKKIKIFKK---------KRGFAFVEFASVEDAQKAIEQLNG--RQF 46 (56)
T ss_dssp HHHHHTTT----S-EEEEEEETT---------STTEEEEEESSHHHHHHHHHHHTT--SEE
T ss_pred ChHHhCCc----ccEEEEEEEeC---------CCCEEEEEECCHHHHHHHHHHhCC--CEE
Confidence 67899999 99999998752 258999999999999999999996 456
No 114
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.45 E-value=8.7e-07 Score=83.14 Aligned_cols=74 Identities=19% Similarity=0.322 Sum_probs=67.1
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEE
Q psy5142 275 GALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE------PTAFVRYKKENNAEAVLKALGSKEIVIKDVKVS 348 (410)
Q Consensus 275 g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~ 348 (410)
.++|+|.|||..+++++|.++|.+|| .|..|.+..+. +.|||.|.+.++|..|+..+ ++..+.|+.|.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g----~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~--~~~~~~~~~~~ 188 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFG----PVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEEL--NGKELEGRPLR 188 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcC----ceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHc--CCCeECCceeE
Confidence 68999999999999999999999999 88888776653 56999999999999999999 68999999999
Q ss_pred EEecCc
Q psy5142 349 IEVVTG 354 (410)
Q Consensus 349 v~~l~g 354 (410)
|.....
T Consensus 189 v~~~~~ 194 (306)
T COG0724 189 VQKAQP 194 (306)
T ss_pred eecccc
Confidence 998654
No 115
>KOG0149|consensus
Probab=98.39 E-value=5.6e-07 Score=82.43 Aligned_cols=71 Identities=17% Similarity=0.204 Sum_probs=59.5
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEE
Q psy5142 275 GALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVS 348 (410)
Q Consensus 275 g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~ 348 (410)
-+.|||.||+|.|..++|+.+|++|| +|....+..+ +++|||.|.+.++|.+|++-- .-.|+|+...
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfG----eI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp---~piIdGR~aN 84 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFG----EIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP---NPIIDGRKAN 84 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhC----ceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC---CCcccccccc
Confidence 45799999999999999999999999 9887766543 346999999999999998765 4688998877
Q ss_pred EEec
Q psy5142 349 IEVV 352 (410)
Q Consensus 349 v~~l 352 (410)
+.++
T Consensus 85 cnlA 88 (247)
T KOG0149|consen 85 CNLA 88 (247)
T ss_pred cchh
Confidence 7664
No 116
>KOG0109|consensus
Probab=98.37 E-value=7e-07 Score=83.96 Aligned_cols=70 Identities=16% Similarity=0.346 Sum_probs=65.4
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEecCc
Q psy5142 277 LLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVTG 354 (410)
Q Consensus 277 ~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l~g 354 (410)
-|||.|||..++...|+.+|++|| .|..+|+++ .+|||..++...|+.||..| ++.+|+|..|.|+..+.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~yg----kVlECDIvK--NYgFVHiEdktaaedairNL--hgYtLhg~nInVeaSks 73 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYG----KVLECDIVK--NYGFVHIEDKTAAEDAIRNL--HGYTLHGVNINVEASKS 73 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhC----ceEeeeeec--ccceEEeecccccHHHHhhc--ccceecceEEEEEeccc
Confidence 489999999999999999999999 999999998 78999999999999999999 88999999999987653
No 117
>KOG0130|consensus
Probab=98.36 E-value=9e-07 Score=74.38 Aligned_cols=77 Identities=23% Similarity=0.333 Sum_probs=64.8
Q ss_pred ccCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCeEE
Q psy5142 269 VLELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE------PTAFVRYKKENNAEAVLKALGSKEIVI 342 (410)
Q Consensus 269 ~~~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~~i 342 (410)
+.....|-||+|.|+++.+++++|.+.|..|| +|+.+.+.-+. ++|.|+|.+.+.|++|+..+ ++..+
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyG----eiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~--Ng~~l 139 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYG----EIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDAL--NGAEL 139 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcc----cccceeeccccccccccceeeeehHhHHHHHHHHHhc--cchhh
Confidence 34466789999999999999999999999999 99998877553 35779999999999999999 56667
Q ss_pred cCeEEEEEe
Q psy5142 343 KDVKVSIEV 351 (410)
Q Consensus 343 ~g~~v~v~~ 351 (410)
-|..|.|..
T Consensus 140 l~q~v~VDw 148 (170)
T KOG0130|consen 140 LGQNVSVDW 148 (170)
T ss_pred hCCceeEEE
Confidence 777766653
No 118
>KOG4211|consensus
Probab=98.35 E-value=9.9e-06 Score=81.32 Aligned_cols=64 Identities=25% Similarity=0.403 Sum_probs=53.1
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEE-EEEcccCcccccccccccEEEEEecCHHHHHHHHHhcC
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITN-IIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENK 190 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~-v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~ 190 (410)
..-.|-+++||+.+|++||.+||+.. -.|.. |.|+.+... ++.|-|||.|++++.|++|+....
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL----~Iv~~gi~l~~d~rg-----R~tGEAfVqF~sqe~ae~Al~rhr 166 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGL----EIVPDGILLPMDQRG-----RPTGEAFVQFESQESAEIALGRHR 166 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCC----cccccceeeeccCCC-----CcccceEEEecCHHHHHHHHHHHH
Confidence 45689999999999999999999987 33333 556666666 789999999999999999997754
No 119
>KOG0131|consensus
Probab=98.33 E-value=9.7e-07 Score=77.88 Aligned_cols=76 Identities=17% Similarity=0.294 Sum_probs=68.2
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCe
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDV 345 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~ 345 (410)
...+.+|||.||++.++++-|+++|-+.| .|..+.++++ .++|||+|.++++|+-|++-| +.+.+-|+
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqag----pVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikil--n~VkLYgr 79 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAG----PVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKIL--NMVKLYGR 79 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcC----ceeeeecchhhhcccccceeEEEEechhhhHHHHHHH--HHHHhcCc
Confidence 34567999999999999999999999999 9999988864 457999999999999999999 58999999
Q ss_pred EEEEEecC
Q psy5142 346 KVSIEVVT 353 (410)
Q Consensus 346 ~v~v~~l~ 353 (410)
+|+|..++
T Consensus 80 pIrv~kas 87 (203)
T KOG0131|consen 80 PIRVNKAS 87 (203)
T ss_pred eeEEEecc
Confidence 99998876
No 120
>KOG0128|consensus
Probab=98.30 E-value=5e-08 Score=102.93 Aligned_cols=142 Identities=15% Similarity=0.194 Sum_probs=113.6
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
.+..++||+||+..+...+|...|+.+ |.+..|++......+ +++|.|||+|..++++.+||.... .++
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~----~~~e~vqi~~h~n~~----~~rG~~Y~~F~~~~~~~aaV~f~d---~~~ 733 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPS----GTIEVVQIVIHKNEK----RFRGKAYVEFLKPEHAGAAVAFRD---SCF 733 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCcc----chhhhHHHHHHhhcc----ccccceeeEeecCCchhhhhhhhh---hhh
Confidence 456789999999999999999999999 988888887555554 899999999999999999998766 233
Q ss_pred cccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCCe
Q psy5142 197 NENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGA 276 (410)
Q Consensus 197 ~~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g~ 276 (410)
.| ..
T Consensus 734 -----------------------~g-----------------------------------------------------K~ 737 (881)
T KOG0128|consen 734 -----------------------FG-----------------------------------------------------KI 737 (881)
T ss_pred -----------------------hh-----------------------------------------------------hh
Confidence 22 12
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC-----CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEe
Q psy5142 277 LLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG-----EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEV 351 (410)
Q Consensus 277 ~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g-----~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~ 351 (410)
.|+|.|+|+..|.+.|+.+|+.+| .+..+.++.. ++.|||.|.++.+|..++..+ ....++...+.+.+
T Consensus 738 ~v~i~g~pf~gt~e~~k~l~~~~g----n~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~--d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 738 SVAISGPPFQGTKEELKSLASKTG----NVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASV--DVAGKRENNGEVQV 811 (881)
T ss_pred hhheeCCCCCCchHHHHhhccccC----CccccchhhhhccccccceeccCCCcchhhhhcccc--hhhhhhhcCccccc
Confidence 577999999999999999999999 6666554432 345899999999999999888 44555555555544
No 121
>KOG0132|consensus
Probab=98.28 E-value=1.4e-06 Score=91.23 Aligned_cols=62 Identities=26% Similarity=0.460 Sum_probs=58.2
Q ss_pred hccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 116 DLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 116 ~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
.+..|||||++||..+++.+|..+|+.| |+|.+|.|. -++|||||.+....+|.+|+..+.+
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feef----GeiqSi~li----------~~R~cAfI~M~~RqdA~kalqkl~n 479 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEF----GEIQSIILI----------PPRGCAFIKMVRRQDAEKALQKLSN 479 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhc----ccceeEeec----------cCCceeEEEEeehhHHHHHHHHHhc
Confidence 4778999999999999999999999999 999999987 5799999999999999999999874
No 122
>KOG0146|consensus
Probab=98.24 E-value=1.7e-06 Score=80.46 Aligned_cols=75 Identities=15% Similarity=0.112 Sum_probs=68.1
Q ss_pred CchhhhhhccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHh
Q psy5142 109 FDIDFVKDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNE 188 (410)
Q Consensus 109 ~~~~~~~~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~ 188 (410)
.....+...+-|.|||-.||.+....+|..+|-+| |.|.+..+--|+.+. .+|.|+||.|+++.+|+.||..
T Consensus 275 ~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PF----GhivSaKVFvDRATN----QSKCFGFVSfDNp~SaQaAIqA 346 (371)
T KOG0146|consen 275 LPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPF----GHIVSAKVFVDRATN----QSKCFGFVSFDNPASAQAAIQA 346 (371)
T ss_pred hhhhhhcCCCcceEEEEeCchhhccHHHHHHhccc----cceeeeeeeehhccc----cccceeeEecCCchhHHHHHHH
Confidence 33445667889999999999999999999999999 999999998888876 8999999999999999999999
Q ss_pred cCC
Q psy5142 189 NKD 191 (410)
Q Consensus 189 ~~g 191 (410)
+||
T Consensus 347 MNG 349 (371)
T KOG0146|consen 347 MNG 349 (371)
T ss_pred hcc
Confidence 997
No 123
>KOG0112|consensus
Probab=98.24 E-value=1.3e-06 Score=92.93 Aligned_cols=159 Identities=13% Similarity=0.205 Sum_probs=124.1
Q ss_pred hhccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCc
Q psy5142 115 KDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNL 194 (410)
Q Consensus 115 ~~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~ 194 (410)
.....+|||++||+..+++.+|+..|..+ |.|..|.|-+...+ .-.-++||.|.+...+..|...+.+ .
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~----gkve~VDiKtP~~~-----~esa~~f~~~~n~dmtp~ak~e~s~--~ 436 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDES----GKVEEVDIKTPHIK-----TESAYAFVSLLNTDMTPSAKFEESG--P 436 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhh----ccccccccccCCCC-----cccchhhhhhhccccCcccchhhcC--C
Confidence 45778999999999999999999999999 99999999776544 4567899999999999888877763 1
Q ss_pred cccccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCC
Q psy5142 195 KFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPT 274 (410)
Q Consensus 195 ~~~~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~ 274 (410)
.+. .| .+++. |- .+....
T Consensus 437 ~I~----------------------~g----~~r~g----lG--------------------------------~~kst~ 454 (975)
T KOG0112|consen 437 LIG----------------------NG----THRIG----LG--------------------------------QPKSTP 454 (975)
T ss_pred ccc----------------------cC----ccccc----cc--------------------------------cccccc
Confidence 110 11 11111 00 001233
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcC--eEEEEEec
Q psy5142 275 GALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKD--VKVSIEVV 352 (410)
Q Consensus 275 g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g--~~v~v~~l 352 (410)
.+.+.+.+|+..+....|...|..|| .|..|+|..|..+|||.|.+...|+.|+..| .+..+++ +.+.|.++
T Consensus 455 ttr~~sgglg~w~p~~~l~r~fd~fG----pir~Idy~hgq~yayi~yes~~~aq~a~~~~--rgap~G~P~~r~rvdla 528 (975)
T KOG0112|consen 455 TTRLQSGGLGPWSPVSRLNREFDRFG----PIRIIDYRHGQPYAYIQYESPPAAQAATHDM--RGAPLGGPPRRLRVDLA 528 (975)
T ss_pred ceeeccCCCCCCChHHHHHHHhhccC----cceeeecccCCcceeeecccCccchhhHHHH--hcCcCCCCCcccccccc
Confidence 45688899999999999999999999 9999999999999999999999999999999 5666765 44555544
No 124
>KOG4454|consensus
Probab=98.23 E-value=4.2e-07 Score=82.27 Aligned_cols=63 Identities=14% Similarity=0.183 Sum_probs=59.7
Q ss_pred ceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 119 AQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 119 ~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
+|||||.||-..+|++-|.++|-+- |+|..|.|+..++. ..+ ||||.|.++-++.-|++.++|
T Consensus 9 drtl~v~n~~~~v~eelL~Elfiqa----GPV~kv~ip~~~d~-----~~k-Fa~v~f~~E~sv~~a~~L~ng 71 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQA----GPVYKVGIPSGQDQ-----EQK-FAYVFFPNENSVQLAGQLENG 71 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhcc----CceEEEeCCCCccC-----CCc-eeeeecccccchhhhhhhccc
Confidence 6999999999999999999999999 99999999998887 566 999999999999999999997
No 125
>KOG4208|consensus
Probab=98.23 E-value=2.4e-06 Score=76.94 Aligned_cols=67 Identities=22% Similarity=0.312 Sum_probs=60.6
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
..--+||..+|..+-+.+|..+|.++. |.|..++|.|++.|| .++|||||+|++++.|.-|-+.+|+
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~---g~v~r~rlsRnkrTG----NSKgYAFVEFEs~eVA~IaAETMNN 114 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFG---GTVTRFRLSRNKRTG----NSKGYAFVEFESEEVAKIAAETMNN 114 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcC---CeeEEEEeecccccC----CcCceEEEEeccHHHHHHHHHHhhh
Confidence 345689999999999999999999883 789999998888887 8999999999999999999999985
No 126
>KOG0153|consensus
Probab=98.22 E-value=4.5e-06 Score=80.41 Aligned_cols=75 Identities=23% Similarity=0.264 Sum_probs=68.0
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEecC
Q psy5142 274 TGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVT 353 (410)
Q Consensus 274 ~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l~ 353 (410)
.=.+|+|.||.+.+++.+|+++|-+|| +|.+|.+..+...|||.|.+.++|+.|.+..- +.+.|+|..|+|..-.
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyG----eirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~-n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYG----EIRSIRILPRKGCAFVTFTTREAAEKAAEKSF-NKLVINGFRLKIKWGR 301 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcC----CeeeEEeecccccceeeehhhHHHHHHHHhhc-ceeeecceEEEEEeCC
Confidence 346899999999999999999999999 99999999999999999999999999998885 3799999999987533
No 127
>KOG0129|consensus
Probab=98.20 E-value=2.3e-05 Score=79.24 Aligned_cols=166 Identities=11% Similarity=0.261 Sum_probs=109.4
Q ss_pred hhhccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCccccccccccc---EEEEEecCHHHHHHHHHhcC
Q psy5142 114 VKDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKG---SIFVTFDNKENAEKFLNENK 190 (410)
Q Consensus 114 ~~~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG---~afVeF~~~e~A~~Al~~~~ 190 (410)
+.....+.|||++||++++++.|...|..| |.+. |.-+..... ....-++| |+|..|+++.+++..+....
T Consensus 254 ~~~~~S~KVFvGGlp~dise~~i~~~F~~F----Gs~~-VdWP~k~~~-~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 254 RSPRYSRKVFVGGLPWDITEAQINASFGQF----GSVK-VDWPGKANS-RGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred CccccccceeecCCCccccHHHHHhhcccc----cceE-eecCCCccc-cccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 345678999999999999999999999999 9874 445531111 01113566 99999999999998877654
Q ss_pred CCCccccccccchhhhhhhhcccccccccCcccccchhhh-c---hHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCc
Q psy5142 191 DKNLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIK-W---QQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSK 266 (410)
Q Consensus 191 g~~~~~~~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~-~---k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~ 266 (410)
-....|- ......+ . .. +.+.|. | ..+|..
T Consensus 328 ~~~~~~y---f~vss~~---------~--k~---k~VQIrPW~laDs~fv~----------------------------- 361 (520)
T KOG0129|consen 328 EGEGNYY---FKVSSPT---------I--KD---KEVQIRPWVLADSDFVL----------------------------- 361 (520)
T ss_pred hcccceE---EEEecCc---------c--cc---cceeEEeeEeccchhhh-----------------------------
Confidence 1001110 0000000 0 00 111111 1 112220
Q ss_pred ccccCCCCCeEEEEeCCCCCCCHHHHHHHHH-hcCCCCCCeeEEEeeCCC------ceEEEEeCChhHHHHHHHHh
Q psy5142 267 QVVLELPTGALLKISDIKEPVSREDIREVLE-KVQTDDQEIVFIEFNVGE------PTAFVRYKKENNAEAVLKAL 335 (410)
Q Consensus 267 ~~~~~~~~g~~l~v~nL~~~~t~edLk~~F~-~~G~~~~~V~~V~~~~g~------~~afV~F~~~e~A~~Al~~l 335 (410)
.......+-.+|||.+||.-++-++|-.+|. -|| .|.||-|.++. +.|=|.|.+..+=-+||.+-
T Consensus 362 d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyG----gV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsar 433 (520)
T KOG0129|consen 362 DHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFG----GVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISAR 433 (520)
T ss_pred ccCcccCccceEEecCCCCcchHHHHHHHHHHhcC----ceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhh
Confidence 1223456677999999999999999999999 599 99998777652 34899999998888888875
No 128
>KOG0117|consensus
Probab=98.18 E-value=6.7e-06 Score=81.55 Aligned_cols=75 Identities=19% Similarity=0.311 Sum_probs=63.4
Q ss_pred cCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEc
Q psy5142 270 LELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIK 343 (410)
Q Consensus 270 ~~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~ 343 (410)
+..+.||-|||..||.++.+++|.-+|.+.| .|-.++++.+ +++|||.|.+.+.|++||+.|| +.+|.
T Consensus 78 ~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG----~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~ln--n~Eir 151 (506)
T KOG0117|consen 78 PPPPRGCEVFVGKIPRDVFEDELVPLFEKIG----KIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELN--NYEIR 151 (506)
T ss_pred CCCCCCceEEecCCCccccchhhHHHHHhcc----ceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhh--Ccccc
Confidence 3458899999999999999999999999999 9988888764 4579999999999999999994 45554
Q ss_pred -CeEEEEE
Q psy5142 344 -DVKVSIE 350 (410)
Q Consensus 344 -g~~v~v~ 350 (410)
|+.|.|.
T Consensus 152 ~GK~igvc 159 (506)
T KOG0117|consen 152 PGKLLGVC 159 (506)
T ss_pred CCCEeEEE
Confidence 6655554
No 129
>smart00361 RRM_1 RNA recognition motif.
Probab=98.12 E-value=1.1e-05 Score=61.36 Aligned_cols=55 Identities=13% Similarity=0.237 Sum_probs=45.0
Q ss_pred HHHHHHHHH----hcCCCCCCeeEEE---eeC----C--CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEE
Q psy5142 289 REDIREVLE----KVQTDDQEIVFIE---FNV----G--EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSI 349 (410)
Q Consensus 289 ~edLk~~F~----~~G~~~~~V~~V~---~~~----g--~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v 349 (410)
+++|+++|+ +|| .|..|. +.+ + .+.|||.|.+.++|.+|+..| ++..++|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG----~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l--~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFG----EVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDL--NGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcC----CeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHh--CCCEECCEEEEe
Confidence 578888888 999 887763 322 2 346999999999999999999 678999999876
No 130
>KOG0153|consensus
Probab=98.09 E-value=4.3e-06 Score=80.56 Aligned_cols=62 Identities=31% Similarity=0.410 Sum_probs=55.6
Q ss_pred hhccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcC
Q psy5142 115 KDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENK 190 (410)
Q Consensus 115 ~~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~ 190 (410)
++..-+||||++|-..+++.+|+++|-+| |+|.+|++. ..+++|||+|.+.++|+.|.+..-
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqy----Geirsi~~~----------~~~~CAFv~ftTR~aAE~Aae~~~ 285 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQY----GEIRSIRIL----------PRKGCAFVTFTTREAAEKAAEKSF 285 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhc----CCeeeEEee----------cccccceeeehhhHHHHHHHHhhc
Confidence 35667899999998899999999999999 999999986 347899999999999999998765
No 131
>KOG1456|consensus
Probab=98.07 E-value=5.9e-05 Score=73.35 Aligned_cols=165 Identities=15% Similarity=0.158 Sum_probs=110.4
Q ss_pred ceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccccc
Q psy5142 119 AQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFNE 198 (410)
Q Consensus 119 ~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~~ 198 (410)
.-.|.|++|-..+++.+|.+.++.| |.|..|.+.. ++..|.|+|++.+.|..++.......+-.
T Consensus 31 spvvhvr~l~~~v~eadl~eal~~f----G~i~yvt~~P----------~~r~alvefedi~~akn~Vnfaa~n~i~i-- 94 (494)
T KOG1456|consen 31 SPVVHVRGLHQGVVEADLVEALSNF----GPIAYVTCMP----------HKRQALVEFEDIEGAKNCVNFAADNQIYI-- 94 (494)
T ss_pred CceEEEeccccccchhHHHHHHhcC----CceEEEEecc----------ccceeeeeeccccchhhheehhccCcccc--
Confidence 3468999999999999999999999 9999998763 34569999999999999886644211111
Q ss_pred cccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCCeEE
Q psy5142 199 NCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGALL 278 (410)
Q Consensus 199 ~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g~~l 278 (410)
.| ...... |...+.- ++ +-.....++.+|
T Consensus 95 ---------------------~g---q~Al~N----yStsq~i-------------~R----------~g~es~~pN~VL 123 (494)
T KOG1456|consen 95 ---------------------AG---QQALFN----YSTSQCI-------------ER----------PGDESATPNKVL 123 (494)
T ss_pred ---------------------cC---chhhcc----cchhhhh-------------cc----------CCCCCCCCCeEE
Confidence 22 111111 1100000 00 001123344455
Q ss_pred EEe--CCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCc-eEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEecCc
Q psy5142 279 KIS--DIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEP-TAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVTG 354 (410)
Q Consensus 279 ~v~--nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~-~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l~g 354 (410)
.|. |--..+|-+-|..++...| .|..|-+.+-.+ .|.|+|++.+.|++|..+||+..+--+=..|+|+.+..
T Consensus 124 l~TIlNp~YpItvDVly~Icnp~G----kVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP 198 (494)
T KOG1456|consen 124 LFTILNPQYPITVDVLYTICNPQG----KVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKP 198 (494)
T ss_pred EEEeecCccccchhhhhhhcCCCC----ceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCc
Confidence 554 4345678999999999999 998887776544 49999999999999999996544333334666665543
No 132
>KOG4205|consensus
Probab=98.01 E-value=3.2e-06 Score=82.33 Aligned_cols=64 Identities=25% Similarity=0.476 Sum_probs=58.6
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNEN 189 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~ 189 (410)
..+.|||++||.++++.+++++|.+| |.|..+.++.+..+. +.+||+||+|.+++++.+++...
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~----g~v~~~~~~~d~~~~----~~rgFgfv~~~~e~sVdkv~~~~ 159 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQF----GKVADVVIMYDKTTS----RPRGFGFVTFDSEDSVDKVTLQK 159 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhcc----ceeEeeEEeeccccc----ccccceeeEeccccccceecccc
Confidence 35689999999999999999999999 999999999998876 89999999999999999988653
No 133
>KOG1456|consensus
Probab=97.97 E-value=9.8e-05 Score=71.87 Aligned_cols=182 Identities=12% Similarity=0.107 Sum_probs=112.4
Q ss_pred cceeeEeecCCCC-CCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 118 IAQSLYVKYIPVD-ATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 118 ~~rtv~V~~lp~~-~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
+..-+.|.+|... +.-+.|-.+|-.| |+|..|.+.+. -.|.|.|++.+..++++|+..+++..+ |
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClY----GNV~rvkFmkT---------k~gtamVemgd~~aver~v~hLnn~~l-f 351 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLY----GNVERVKFMKT---------KPGTAMVEMGDAYAVERAVTHLNNIPL-F 351 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhc----CceeeEEEeec---------ccceeEEEcCcHHHHHHHHHHhccCcc-c
Confidence 3456778888865 7789999999999 99999998763 356799999999999999999996322 3
Q ss_pred cccccchhhhhhh--hcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCC
Q psy5142 197 NENCEHKNAEKFL--NENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPT 274 (410)
Q Consensus 197 ~~~~~~~~~~k~~--~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~ 274 (410)
.... .....+.. .+..+..+ -.| . .. -++|...++... ...+| +....-.++
T Consensus 352 G~kl-~v~~SkQ~~v~~~~pflL-pDg---S---pS-fKdys~SkNnRF------------ssp~q-----AsKNrIq~P 405 (494)
T KOG1456|consen 352 GGKL-NVCVSKQNFVSPVQPFLL-PDG---S---PS-FKDYSGSKNNRF------------SSPEQ-----ASKNRIQPP 405 (494)
T ss_pred cceE-EEeeccccccccCCceec-CCC---C---cc-hhhccccccccc------------CChhH-----hhcccccCC
Confidence 2111 10000000 00000000 000 0 00 012211100000 00000 011123466
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCc----eEEEEeCChhHHHHHHHHhcCCCeEEcC
Q psy5142 275 GALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEP----TAFVRYKKENNAEAVLKALGSKEIVIKD 344 (410)
Q Consensus 275 g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~----~afV~F~~~e~A~~Al~~l~~~~~~i~g 344 (410)
.++|++.|.|..+|++.|-.+|...++ ....|++-+.++ .|.++|++.++|-.||..+ +-+.|++
T Consensus 406 s~vLHffNaP~~vtEe~l~~i~nek~v---~~~svkvFp~kserSssGllEfe~~s~Aveal~~~--NH~pi~~ 474 (494)
T KOG1456|consen 406 SNVLHFFNAPLGVTEEQLIGICNEKDV---PPTSVKVFPLKSERSSSGLLEFENKSDAVEALMKL--NHYPIEG 474 (494)
T ss_pred cceeEEecCCCccCHHHHHHHhhhcCC---CcceEEeecccccccccceeeeehHHHHHHHHHHh--ccccccC
Confidence 789999999999999999999998772 234556655443 4999999999999999999 4566653
No 134
>KOG0116|consensus
Probab=97.96 E-value=7.3e-06 Score=82.79 Aligned_cols=68 Identities=22% Similarity=0.258 Sum_probs=56.6
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...+|||+|||.++|.++|+++|+.| |.|....|..-...+ +...|+||+|.+.++++.||.... +.+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~F----G~Ik~~~I~vr~~~~----~~~~fgFV~f~~~~~~~~~i~Asp---~~i 354 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQF----GPIKEGGIQVRSPGG----KNPCFGFVEFENAAAVQNAIEASP---LEI 354 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhc----ccccccceEEeccCC----CcCceEEEEEeecchhhhhhhcCc---ccc
Confidence 34569999999999999999999999 999999886544221 233999999999999999999875 555
No 135
>KOG0533|consensus
Probab=97.96 E-value=1.9e-05 Score=74.14 Aligned_cols=77 Identities=17% Similarity=0.332 Sum_probs=65.4
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC-----CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEE
Q psy5142 276 ALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG-----EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIE 350 (410)
Q Consensus 276 ~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g-----~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~ 350 (410)
+.|.|.|||..|+.+||+++|.+|| .+..|-+..+ .++|-|.|...++|..|++.+ +++.++|..+++.
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~----~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~--~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFG----ELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKY--NGVALDGRPMKIE 157 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhc----cceEEeeccCCCCCCCccceeeecchHhHHHHHHHh--cCcccCCceeeeE
Confidence 7899999999999999999999999 7766655432 256999999999999999999 5699999999999
Q ss_pred ecCchHHH
Q psy5142 351 VVTGEEEQ 358 (410)
Q Consensus 351 ~l~g~eE~ 358 (410)
++......
T Consensus 158 ~i~~~~~~ 165 (243)
T KOG0533|consen 158 IISSPSQS 165 (243)
T ss_pred EecCcccc
Confidence 88755443
No 136
>KOG0132|consensus
Probab=97.95 E-value=1.8e-05 Score=83.14 Aligned_cols=83 Identities=22% Similarity=0.341 Sum_probs=71.9
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEec--
Q psy5142 275 GALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVV-- 352 (410)
Q Consensus 275 g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l-- 352 (410)
.++|+|.+|+..+++.||+.+|+.|| +|..|.+......|||.+....+|.+|+.+| .++.+.++.|++...
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefG----eiqSi~li~~R~cAfI~M~~RqdA~kalqkl--~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFG----EIQSIILIPPRGCAFIKMVRRQDAEKALQKL--SNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcc----cceeEeeccCCceeEEEEeehhHHHHHHHHH--hcccccceeeEEeeecc
Confidence 46899999999999999999999999 9999999999999999999999999999999 467888887755544
Q ss_pred CchHH--HHHHHH
Q psy5142 353 TGEEE--QTVLDR 363 (410)
Q Consensus 353 ~g~eE--~~yw~k 363 (410)
.|-.+ +.||.-
T Consensus 495 ~G~kse~k~~wD~ 507 (894)
T KOG0132|consen 495 KGPKSEYKDYWDV 507 (894)
T ss_pred CCcchhhhhhhhc
Confidence 44444 668865
No 137
>KOG4209|consensus
Probab=97.95 E-value=7.6e-06 Score=76.77 Aligned_cols=70 Identities=21% Similarity=0.191 Sum_probs=64.3
Q ss_pred hhhhccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 113 FVKDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 113 ~~~~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
...+++.+.+||+|+.+.+|.+++...|+.| |.|..|.|+.+...+ .++||+||+|.+.+.++.|+. +++
T Consensus 95 ~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~C----g~i~~~ti~~d~~~~----~~k~~~yvef~~~~~~~~ay~-l~g 164 (231)
T KOG4209|consen 95 RQKEVDAPSVWVGNVDFLVTLTKIELHFESC----GGINRVTVPKDKFRG----HPKGFAYVEFSSYELVEEAYK-LDG 164 (231)
T ss_pred hhhccCCceEEEeccccccccchhhheeecc----CCccceeeeccccCC----CcceeEEEecccHhhhHHHhh-cCC
Confidence 4567889999999999999999999999999 999999999998876 789999999999999999999 554
No 138
>KOG0111|consensus
Probab=97.94 E-value=6.8e-06 Score=74.53 Aligned_cols=75 Identities=12% Similarity=0.247 Sum_probs=65.5
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEE
Q psy5142 274 TGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKV 347 (410)
Q Consensus 274 ~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v 347 (410)
...+|||.||.+++++.-|...|-+|| +|..|.++.+ .++|||+|.-.++|.+||..| ++.++-|+.|
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFG----DI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNM--nesEL~Grti 82 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFG----DIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNM--NESELFGRTI 82 (298)
T ss_pred cceeEEeccchHHHHHHHHHhcccccc----chhhcccccchhcccccceeEEEeeccchhHHHhhcC--chhhhcceeE
Confidence 346899999999999999999999999 8888877643 457999999999999999999 6788999999
Q ss_pred EEEecCc
Q psy5142 348 SIEVVTG 354 (410)
Q Consensus 348 ~v~~l~g 354 (410)
+|.++..
T Consensus 83 rVN~AkP 89 (298)
T KOG0111|consen 83 RVNLAKP 89 (298)
T ss_pred EEeecCC
Confidence 9987643
No 139
>KOG0126|consensus
Probab=97.94 E-value=1.8e-06 Score=76.10 Aligned_cols=76 Identities=21% Similarity=0.274 Sum_probs=67.5
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCeEEcCe
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE------PTAFVRYKKENNAEAVLKALGSKEIVIKDV 345 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~~i~g~ 345 (410)
+...+-|||.|||.+.|+.||--+|++|| +|..|.+.++. ++||+.|++.-+.--|+..| +|+.|.|+
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyG----e~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~--NGiki~gR 105 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYG----EIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNL--NGIKILGR 105 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccC----ceEEEEEEecCCCCcccceEEEEecCccceEEEEecc--CCceecce
Confidence 44557899999999999999999999999 99999888754 35999999999988999999 78999999
Q ss_pred EEEEEecC
Q psy5142 346 KVSIEVVT 353 (410)
Q Consensus 346 ~v~v~~l~ 353 (410)
.|+|..+.
T Consensus 106 tirVDHv~ 113 (219)
T KOG0126|consen 106 TIRVDHVS 113 (219)
T ss_pred eEEeeecc
Confidence 99999874
No 140
>KOG1365|consensus
Probab=97.91 E-value=8.8e-05 Score=72.42 Aligned_cols=157 Identities=17% Similarity=0.267 Sum_probs=99.1
Q ss_pred eeEeecCCCCCCHHHHHHHHhhccCCCC-ceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcccccc
Q psy5142 121 SLYVKYIPVDATLDDIKDFFKKNTSEDV-KITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFNEN 199 (410)
Q Consensus 121 tv~V~~lp~~~t~~~L~~~F~~~~~~~G-~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~~~ 199 (410)
-|..++|||..+..+|..||.-....+| .+... ...+ +-.|++.|.|.++|.-+-|++... ...
T Consensus 62 vvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG----~~qg-----rRnge~lvrf~d~e~RdlalkRhk---hh~--- 126 (508)
T KOG1365|consen 62 VVRARGLPWQSSDQDIARFFKGLNIANGGRALCL----NAQG-----RRNGEALVRFVDPEGRDLALKRHK---HHM--- 126 (508)
T ss_pred EEEecCCCCCcccCCHHHHHhhhhccccceeeee----hhhh-----ccccceEEEecCchhhhhhhHhhh---hhc---
Confidence 4557899999999999999986522112 22221 2222 668999999999999999998754 222
Q ss_pred ccchhhhhhhhcccccccccCcccccchhhhc--hHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCCeE
Q psy5142 200 CEHKNAEKFLNENKDKNLKFNENCEHSLLIKW--QQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGAL 277 (410)
Q Consensus 200 ~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~--k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g~~ 277 (410)
.+ +.+.|-. -.++.. -. .....+...-+....-.+
T Consensus 127 --------------------g~---ryievYka~ge~f~~-----------------ia---gg~s~e~~~flsk~~qvi 163 (508)
T KOG1365|consen 127 --------------------GT---RYIEVYKATGEEFLK-----------------IA---GGTSNEAAPFLSKENQVI 163 (508)
T ss_pred --------------------cC---CceeeeccCchhheE-----------------ec---CCccccCCCCCCcccceE
Confidence 22 2222210 001100 00 000001111112222468
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcC---CCCCCeeEEEeeCCCc--eEEEEeCChhHHHHHHHHh
Q psy5142 278 LKISDIKEPVSREDIREVLEKVQ---TDDQEIVFIEFNVGEP--TAFVRYKKENNAEAVLKAL 335 (410)
Q Consensus 278 l~v~nL~~~~t~edLk~~F~~~G---~~~~~V~~V~~~~g~~--~afV~F~~~e~A~~Al~~l 335 (410)
|..+|||++++..|+.++|.+.- .....|.||..+.|+. .|||.|..+++|+.|+.+-
T Consensus 164 vRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~kh 226 (508)
T KOG1365|consen 164 VRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKH 226 (508)
T ss_pred EEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHH
Confidence 89999999999999999997421 1124688888876654 4999999999999999886
No 141
>KOG0533|consensus
Probab=97.88 E-value=2.9e-05 Score=72.92 Aligned_cols=64 Identities=16% Similarity=0.325 Sum_probs=60.7
Q ss_pred ceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 119 AQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 119 ~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
..+|+|.|||+.++.+||+++|..| |++..+.|..++.+ .+.|+|-|.|...++|..|++.++|
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~----~~~~r~~vhy~~~G-----~s~Gta~v~~~r~~DA~~avk~~~g 146 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEF----GELKRVAVHYDRAG-----RSLGTADVSFNRRDDAERAVKKYNG 146 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHh----ccceEEeeccCCCC-----CCCccceeeecchHhHHHHHHHhcC
Confidence 4689999999999999999999999 99999999988888 8999999999999999999999996
No 142
>KOG0415|consensus
Probab=97.85 E-value=4.2e-05 Score=73.90 Aligned_cols=77 Identities=16% Similarity=0.343 Sum_probs=68.5
Q ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCc------eEEEEeCChhHHHHHHHHhcCCCeEEcC
Q psy5142 271 ELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEP------TAFVRYKKENNAEAVLKALGSKEIVIKD 344 (410)
Q Consensus 271 ~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~------~afV~F~~~e~A~~Al~~l~~~~~~i~g 344 (410)
..|+..+|||--|.+-|+++||.-+|+.|| .|..+.+.++.. +|||+|.+.++.++|.=+| .++.|++
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG----~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKM--dNvLIDD 308 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFG----KIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKM--DNVLIDD 308 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcc----cceeeeEEecccccchhheeeeeecchhhHHHHHhhh--cceeecc
Confidence 356778999999999999999999999999 999998887643 5999999999999999999 6799999
Q ss_pred eEEEEEecC
Q psy5142 345 VKVSIEVVT 353 (410)
Q Consensus 345 ~~v~v~~l~ 353 (410)
+.|.|...+
T Consensus 309 rRIHVDFSQ 317 (479)
T KOG0415|consen 309 RRIHVDFSQ 317 (479)
T ss_pred ceEEeehhh
Confidence 999998654
No 143
>KOG0108|consensus
Probab=97.81 E-value=4.6e-05 Score=77.51 Aligned_cols=74 Identities=14% Similarity=0.247 Sum_probs=65.8
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEE
Q psy5142 276 ALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSI 349 (410)
Q Consensus 276 ~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v 349 (410)
+.+||.|+|+++++++|.++|+..| .|..+++..+ +++||+.|.+.++|..|++.| ++.+++|+.|++
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g----~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~l--Ng~~~~gr~l~v 92 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVG----PVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNL--NGAEFNGRKLRV 92 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccC----ccceeeecccccCCCcCceeeEecCchhhHHHHHHhc--CCcccCCceEEe
Confidence 8999999999999999999999999 8877776643 346999999999999999999 789999999999
Q ss_pred EecCch
Q psy5142 350 EVVTGE 355 (410)
Q Consensus 350 ~~l~g~ 355 (410)
.....+
T Consensus 93 ~~~~~~ 98 (435)
T KOG0108|consen 93 NYASNR 98 (435)
T ss_pred eccccc
Confidence 987643
No 144
>KOG0415|consensus
Probab=97.79 E-value=2.8e-05 Score=75.11 Aligned_cols=67 Identities=19% Similarity=0.173 Sum_probs=61.4
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
.....|||=-|.+-+|.++|.-+||.| |.|.++.++++..++ .+--+|||+|++.++.++|.=.+++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrF----G~i~sceVIRD~ktg----dsLqyaFiEFen~escE~AyFKMdN 303 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRF----GKIVSCEVIRDRKTG----DSLQYAFIEFENKESCEQAYFKMDN 303 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhc----ccceeeeEEeccccc----chhheeeeeecchhhHHHHHhhhcc
Confidence 445789999999999999999999999 999999999999887 7888999999999999999977774
No 145
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.77 E-value=0.00013 Score=59.00 Aligned_cols=69 Identities=16% Similarity=0.183 Sum_probs=61.2
Q ss_pred eeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 120 QSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 120 rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
+||-|+|+|...|.++|.+++... +.|..--+-||-|..++ ...|+|||.|.+++.|.+..+..+| ..|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~--~~g~yDF~YLPiDf~~~----~N~GYAFVNf~~~~~~~~F~~~f~g--~~w 70 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEH--FKGKYDFFYLPIDFKNK----CNLGYAFVNFTSPQAAIRFYKAFNG--KKW 70 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHh--ccCcceEEEeeeeccCC----CceEEEEEEcCCHHHHHHHHHHHcC--Ccc
Confidence 689999999999999999999875 34888889999887764 7899999999999999999999997 566
No 146
>KOG4206|consensus
Probab=97.66 E-value=0.00015 Score=66.38 Aligned_cols=75 Identities=20% Similarity=0.336 Sum_probs=62.9
Q ss_pred CCCeEEEEeCCCCCCCHHHHHH----HHHhcCCCCCCeeEEEeeCC---CceEEEEeCChhHHHHHHHHhcCCCeEEcCe
Q psy5142 273 PTGALLKISDIKEPVSREDIRE----VLEKVQTDDQEIVFIEFNVG---EPTAFVRYKKENNAEAVLKALGSKEIVIKDV 345 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~----~F~~~G~~~~~V~~V~~~~g---~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~ 345 (410)
.++-+|||.||++.+..++|+. +|++|| .|..|...+. .+-|||.|++.+.|-.|+..| +|+-+-|+
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG----~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l--~gfpFygK 80 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFG----KILDISAFKTPKMRGQAFVVFKETEAASAALRAL--QGFPFYGK 80 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhC----CeEEEEecCCCCccCceEEEecChhHHHHHHHHh--cCCcccCc
Confidence 4444999999999999999998 999999 8876655432 356999999999999999999 78889999
Q ss_pred EEEEEecC
Q psy5142 346 KVSIEVVT 353 (410)
Q Consensus 346 ~v~v~~l~ 353 (410)
.+++.-+.
T Consensus 81 ~mriqyA~ 88 (221)
T KOG4206|consen 81 PMRIQYAK 88 (221)
T ss_pred hhheeccc
Confidence 98887654
No 147
>KOG4210|consensus
Probab=97.65 E-value=4.4e-05 Score=73.98 Aligned_cols=166 Identities=17% Similarity=0.225 Sum_probs=111.5
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFN 197 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~ 197 (410)
...+.|++++-+.+...++..+|..+ |.+....+....... .++|+++|.|...+.+..|+.... ....
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~----g~~~~~~~S~~~~~~----~sk~~~s~~f~~ks~~~~~l~~s~---~~~~ 155 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEA----GLRVDARSSSLEDSL----SSKGGLSVHFAGKSQFFAALEESG---SKVL 155 (285)
T ss_pred ccccccccccccchhhccccccchhh----cCcccchhhhhcccc----ccccceeeccccHHHHHHHHHhhh---cccc
Confidence 46889999999999988899999999 988877776654443 689999999999999999998865 1110
Q ss_pred ccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCCeE
Q psy5142 198 ENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGAL 277 (410)
Q Consensus 198 ~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g~~ 277 (410)
.... .. ..|..... .+. +.+ .......+...+
T Consensus 156 ~~~~------------------~~---~dl~~~~~-~~~------------~n~--------------~~~~~~~~s~~~ 187 (285)
T KOG4210|consen 156 DGNK------------------GE---KDLNTRRG-LRP------------KNK--------------LSRLSSGPSDTI 187 (285)
T ss_pred cccc------------------cc---Cccccccc-ccc------------cch--------------hcccccCccccc
Confidence 0000 00 00000000 000 000 000112344556
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCc------eEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEE
Q psy5142 278 LKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEP------TAFVRYKKENNAEAVLKALGSKEIVIKDVKVSI 349 (410)
Q Consensus 278 l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~------~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v 349 (410)
+++.+|++.+++++|+.+|..+| .|..|+++.... .|||.|.....+..++.. +...+.+.++.+
T Consensus 188 ~~~~~~~f~~~~d~~~~~~~~~~----~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 258 (285)
T KOG4210|consen 188 FFVGELDFSLTRDDLKEHFVSSG----EITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND---QTRSIGGRPLRL 258 (285)
T ss_pred eeecccccccchHHHhhhccCcC----cceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc---ccCcccCccccc
Confidence 66899999999999999999999 999998886543 489999998877777654 234555555444
No 148
>KOG0120|consensus
Probab=97.64 E-value=0.00013 Score=74.88 Aligned_cols=181 Identities=14% Similarity=0.220 Sum_probs=117.0
Q ss_pred hhccceeeEeecCCCCCCHHHHHHHHhhccC-------CCC-ceEEEEEcccCcccccccccccEEEEEecCHHHHHHHH
Q psy5142 115 KDLIAQSLYVKYIPVDATLDDIKDFFKKNTS-------EDV-KITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFL 186 (410)
Q Consensus 115 ~~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~-------~~G-~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al 186 (410)
...+.+.+||+++|..++++....||..-+. ..| .|..+.+- .-+.|||++|.+.++|..|+
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n----------~~~nfa~ie~~s~~~at~~~ 240 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN----------LEKNFAFIEFRSISEATEAM 240 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec----------ccccceeEEecCCCchhhhh
Confidence 3567899999999999999999999975411 101 24444332 45889999999999999998
Q ss_pred HhcCCCCccccccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCC-CCC
Q psy5142 187 NENKDKNLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNT-EGS 265 (410)
Q Consensus 187 ~~~~g~~~~~~~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~-~~~ 265 (410)
.... ..| .| .++.+.-..+|......--. -.+ ++. ...
T Consensus 241 ~~~~---~~f-----------------------~g---~~~~~~r~~d~~~~p~~~~~-----~~~-------~~~~~~~ 279 (500)
T KOG0120|consen 241 ALDG---IIF-----------------------EG---RPLKIRRPHDYQPVPGITLS-----PSQ-------LGKVGLL 279 (500)
T ss_pred cccc---hhh-----------------------CC---CCceecccccccCCccchhh-----hcc-------ccccCCc
Confidence 7755 445 44 44333321111100000000 000 000 000
Q ss_pred cccccCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeC------CCceEEEEeCChhHHHHHHHHhcCCC
Q psy5142 266 KQVVLELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNV------GEPTAFVRYKKENNAEAVLKALGSKE 339 (410)
Q Consensus 266 ~~~~~~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~------g~~~afV~F~~~e~A~~Al~~l~~~~ 339 (410)
..........+-+++.|||...++.+++++...|| .+.-..+.. ++++||..|-++.....|+..| +|
T Consensus 280 ~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg----~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agL--nG 353 (500)
T KOG0120|consen 280 PASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFG----PLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGL--NG 353 (500)
T ss_pred ccccCcccccchhhhccCcCccCHHHHHHHHHhcc----cchhheeecccccccccceeeeeeeCCcchhhhhccc--ch
Confidence 00111233456788999999999999999999999 665444433 3456999999999999999999 67
Q ss_pred eEEcCeEEEEEec
Q psy5142 340 IVIKDVKVSIEVV 352 (410)
Q Consensus 340 ~~i~g~~v~v~~l 352 (410)
..++++.+.+...
T Consensus 354 m~lgd~~lvvq~A 366 (500)
T KOG0120|consen 354 MQLGDKKLVVQRA 366 (500)
T ss_pred hhhcCceeEeehh
Confidence 8888888777643
No 149
>KOG4660|consensus
Probab=97.61 E-value=8e-05 Score=76.01 Aligned_cols=64 Identities=25% Similarity=0.330 Sum_probs=58.3
Q ss_pred hhccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 115 KDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 115 ~~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
.+...++|+|-|||.+++.++|+.+|+.| |+|..|++-+ ...|.+||+|-+.-+|+.|++.+++
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~y----Geir~ir~t~---------~~~~~~~v~FyDvR~A~~Alk~l~~ 134 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAY----GEIREIRETP---------NKRGIVFVEFYDVRDAERALKALNR 134 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhh----cchhhhhccc---------ccCceEEEEEeehHhHHHHHHHHHH
Confidence 46788999999999999999999999999 9999987754 4578999999999999999999885
No 150
>KOG4661|consensus
Probab=97.52 E-value=0.00014 Score=74.10 Aligned_cols=66 Identities=18% Similarity=0.242 Sum_probs=59.0
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcC
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENK 190 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~ 190 (410)
...|.|||.+|...+-..+|+++|++| |.|+-..+..+..++ .-+.|+||++.+.++|.++|+.++
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKy----GKVvGAKVVTNaRsP----GaRCYGfVTMSts~eAtkCI~hLH 468 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKY----GKVVGAKVVTNARSP----GARCYGFVTMSTSAEATKCIEHLH 468 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHh----cceeceeeeecCCCC----CcceeEEEEecchHHHHHHHHHhh
Confidence 346889999999999999999999999 999999988776654 568899999999999999999876
No 151
>KOG4208|consensus
Probab=97.47 E-value=0.00051 Score=62.13 Aligned_cols=76 Identities=12% Similarity=0.225 Sum_probs=64.7
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEE
Q psy5142 275 GALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVS 348 (410)
Q Consensus 275 g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~ 348 (410)
--++++..+|..+.+..|..+|.+||+ .|..+.+.+. +++|||+|.+++.|+-|-+.| +++.+.++.|.
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g---~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETM--NNYLl~e~lL~ 123 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGG---TVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETM--NNYLLMEHLLE 123 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCC---eeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHh--hhhhhhhheee
Confidence 347788999999999999999999941 6777777653 346999999999999999999 67999999999
Q ss_pred EEecCch
Q psy5142 349 IEVVTGE 355 (410)
Q Consensus 349 v~~l~g~ 355 (410)
+.++..+
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9988766
No 152
>KOG4661|consensus
Probab=97.44 E-value=0.00027 Score=72.15 Aligned_cols=75 Identities=16% Similarity=0.233 Sum_probs=63.9
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCeEEcCeE
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE------PTAFVRYKKENNAEAVLKALGSKEIVIKDVK 346 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~ 346 (410)
..+..|.|.||+..|--.||+.+|++|| .|.-..++++. .+|||.+.+.+.|.+||..| +..++.|+.
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyG----KVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hL--HrTELHGrm 476 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYG----KVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHL--HRTELHGRM 476 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhc----ceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHh--hhhhhccee
Confidence 4467899999999999999999999999 77666665432 35999999999999999999 788999999
Q ss_pred EEEEecC
Q psy5142 347 VSIEVVT 353 (410)
Q Consensus 347 v~v~~l~ 353 (410)
|.|+...
T Consensus 477 ISVEkaK 483 (940)
T KOG4661|consen 477 ISVEKAK 483 (940)
T ss_pred eeeeecc
Confidence 9998654
No 153
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.43 E-value=0.0003 Score=57.93 Aligned_cols=57 Identities=21% Similarity=0.209 Sum_probs=38.2
Q ss_pred eeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcC
Q psy5142 120 QSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENK 190 (410)
Q Consensus 120 rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~ 190 (410)
..|++.+++..++.++|++.|++| |.|..|.+.+. ...|||.|.+++.|+.|++.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~----g~V~yVD~~~G----------~~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQF----GEVAYVDFSRG----------DTEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS------EEEEE--TT-----------SEEEEEESS---HHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhc----CCcceEEecCC----------CCEEEEEECCcchHHHHHHHHH
Confidence 368899999999999999999999 99999988753 3359999999999999998765
No 154
>KOG0226|consensus
Probab=97.37 E-value=0.00037 Score=64.85 Aligned_cols=67 Identities=16% Similarity=0.118 Sum_probs=61.4
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
.++..||++.|.-+++.+-|-..|.+| -.-....+.|++.++ +++||+||.|.+++++..|+.+++|
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kf----psf~~akviRdkRTg----KSkgygfVSf~~pad~~rAmrem~g 254 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKF----PSFQKAKVIRDKRTG----KSKGYGFVSFRDPADYVRAMREMNG 254 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhc----cchhhcccccccccc----ccccceeeeecCHHHHHHHHHhhcc
Confidence 456789999999999999999999999 777778888998887 8999999999999999999999996
No 155
>KOG4307|consensus
Probab=97.35 E-value=0.00052 Score=71.68 Aligned_cols=196 Identities=11% Similarity=0.030 Sum_probs=114.3
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFN 197 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~ 197 (410)
+.+-+-+++.++.+...++++||... .|..+.|..+.-.+ .-.|.++|+|....++++|+...+ ..+.
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-----~~~~~~l~~~~v~~----~~tG~~~v~f~~~~~~q~A~~rn~---~~~~ 377 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-----NAQSTDLSENRVAP----PQTGRKTVMFTPQAPFQNAFTRNP---SDDV 377 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-----cccccchhhhhcCC----CcCCceEEEecCcchHHHHHhcCc---hhhh
Confidence 34556678999999999999999875 56666666555442 337899999999999999998866 3331
Q ss_pred ccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCC-CCCcccccCCCCCe
Q psy5142 198 ENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNT-EGSKQVVLELPTGA 276 (410)
Q Consensus 198 ~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~-~~~~~~~~~~~~g~ 276 (410)
.+... -.|.....+.+...+.-.+-.. . . ...-..... ...+. ...........-+.
T Consensus 378 ~R~~q--------~~P~g~~~~~~a~~~~~~~~~~-~---------~---~~~hg~p~~-~pr~~~~~gq~vp~P~~ag~ 435 (944)
T KOG4307|consen 378 NRPFQ--------TGPPGNLGRNGAPPFQAGVPPP-V---------I---QNNHGRPIA-PPRAMVRPGQNVPFPGGAGG 435 (944)
T ss_pred hccee--------ecCCCccccccCccccccCCCC-c---------c---cccCCCCCC-CcccccCCCCCCCCCCCccc
Confidence 11111 0111111111100000000000 0 0 000000000 00000 00011122344567
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCCCCCe-eEEEeeCCC-----ceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEE
Q psy5142 277 LLKISDIKEPVSREDIREVLEKVQTDDQEI-VFIEFNVGE-----PTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIE 350 (410)
Q Consensus 277 ~l~v~nL~~~~t~edLk~~F~~~G~~~~~V-~~V~~~~g~-----~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~ 350 (410)
.|||.+||..++..++-..|+..- .| .+|.+.++. ..|||.|..++++..|...- ..+-++.+.|.|.
T Consensus 436 ~lyv~~lP~~t~~~~~v~~f~~~~----~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~--~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 436 ALYVFQLPVMTPIVPPVNKFMGAA----AVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVK--TKFYPGHRIIRVD 509 (944)
T ss_pred eEEeccCCccccccchhhhhhhhh----hhhheeEeccCCcccccchhhheeccccccchhhhcc--cccccCceEEEee
Confidence 899999999999999999999865 33 346655432 35999999988888887665 5677777888888
Q ss_pred ecC
Q psy5142 351 VVT 353 (410)
Q Consensus 351 ~l~ 353 (410)
-.+
T Consensus 510 si~ 512 (944)
T KOG4307|consen 510 SIA 512 (944)
T ss_pred chh
Confidence 665
No 156
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.34 E-value=0.0005 Score=49.28 Aligned_cols=52 Identities=19% Similarity=0.369 Sum_probs=43.7
Q ss_pred eeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHH
Q psy5142 120 QSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFL 186 (410)
Q Consensus 120 rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al 186 (410)
+.|-|.|+|.+.. +.+..+|.+| |+|..+.++ ....+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~f----GeI~~~~~~----------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASF----GEIVDIYVP----------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhc----CCEEEEEcC----------CCCcEEEEEECCHHHHHhhC
Confidence 6789999997765 5667799999 999999886 23567999999999999985
No 157
>KOG1457|consensus
Probab=97.28 E-value=0.0013 Score=60.08 Aligned_cols=74 Identities=19% Similarity=0.335 Sum_probs=59.7
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC-----ceEEEEeCChhHHHHHHHHhcCCCeEEc---CeEE
Q psy5142 276 ALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE-----PTAFVRYKKENNAEAVLKALGSKEIVIK---DVKV 347 (410)
Q Consensus 276 ~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~-----~~afV~F~~~e~A~~Al~~l~~~~~~i~---g~~v 347 (410)
.+|||.|||.++..-+|..+|..|- +.+-..+++..+. ..|||.|.+...|.+|+.+| +|+.++ +..+
T Consensus 35 RTLFVSGLP~DvKpREiynLFR~f~--GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaL--NGvrFDpE~~stL 110 (284)
T KOG1457|consen 35 RTLFVSGLPNDVKPREIYNLFRRFH--GYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNAL--NGVRFDPETGSTL 110 (284)
T ss_pred ceeeeccCCcccCHHHHHHHhccCC--CccceeeeeccCCCccccceEEEEecchHHHHHHHHHh--cCeeeccccCcee
Confidence 5899999999999999999999986 2234445555433 46999999999999999999 678887 6788
Q ss_pred EEEecC
Q psy5142 348 SIEVVT 353 (410)
Q Consensus 348 ~v~~l~ 353 (410)
.++++.
T Consensus 111 hiElAK 116 (284)
T KOG1457|consen 111 HIELAK 116 (284)
T ss_pred Eeeehh
Confidence 888753
No 158
>KOG2193|consensus
Probab=97.11 E-value=0.00028 Score=69.72 Aligned_cols=148 Identities=15% Similarity=0.226 Sum_probs=101.2
Q ss_pred eeeEeecCCCCCCHHHHHHHHhhc-cCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccccc
Q psy5142 120 QSLYVKYIPVDATLDDIKDFFKKN-TSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFNE 198 (410)
Q Consensus 120 rtv~V~~lp~~~t~~~L~~~F~~~-~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~~ 198 (410)
..+|++||....|..+|+.+|... +...|.+ | .-.|++||...+...|.+|++.++|+ ..+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~f----l-----------~k~gyafvd~pdq~wa~kaie~~sgk-~el-- 63 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQF----L-----------VKSGYAFVDCPDQQWANKAIETLSGK-VEL-- 63 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcce----e-----------eecceeeccCCchhhhhhhHHhhchh-hhh--
Confidence 358999999999999999999754 1111221 1 23799999999999999999999863 333
Q ss_pred cccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCCeEE
Q psy5142 199 NCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGALL 278 (410)
Q Consensus 199 ~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g~~l 278 (410)
.| ..+.+...-. + ..+ ..-+
T Consensus 64 ---------------------qG---kr~e~~~sv~----k-kqr-------------------------------srk~ 83 (584)
T KOG2193|consen 64 ---------------------QG---KRQEVEHSVP----K-KQR-------------------------------SRKI 83 (584)
T ss_pred ---------------------cC---ceeeccchhh----H-HHH-------------------------------hhhh
Confidence 44 4333321100 0 000 0014
Q ss_pred EEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEee-CCCceE--EEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEe
Q psy5142 279 KISDIKEPVSREDIREVLEKVQTDDQEIVFIEFN-VGEPTA--FVRYKKENNAEAVLKALGSKEIVIKDVKVSIEV 351 (410)
Q Consensus 279 ~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~-~g~~~a--fV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~ 351 (410)
.|.|+|+..-|+-|..++.+|| .|..+... ....++ -|.|.+.+.++-||..+ ++..+.+..+++..
T Consensus 84 Qirnippql~wevld~Ll~qyg----~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl--~g~Q~en~~~k~~Y 153 (584)
T KOG2193|consen 84 QIRNIPPQLQWEVLDSLLAQYG----TVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKL--NGPQLENQHLKVGY 153 (584)
T ss_pred hHhcCCHHHHHHHHHHHHhccC----CHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhh--cchHhhhhhhhccc
Confidence 4889999999999999999999 66655433 233344 46889999999999999 55666555555543
No 159
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.05 E-value=0.0016 Score=46.72 Aligned_cols=51 Identities=24% Similarity=0.353 Sum_probs=42.9
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHH
Q psy5142 277 LLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVL 332 (410)
Q Consensus 277 ~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al 332 (410)
-|.|.|.+++.. +.+..+|..|| +|..+.+.......||+|.+..+|++||
T Consensus 3 wI~V~Gf~~~~~-~~vl~~F~~fG----eI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 3 WISVSGFPPDLA-EEVLEHFASFG----EIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEEeECchHH-HHHHHHHHhcC----CEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 467888887665 45566999999 9999999877789999999999999985
No 160
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.01 E-value=0.0039 Score=48.61 Aligned_cols=68 Identities=18% Similarity=0.289 Sum_probs=44.0
Q ss_pred eEEEEeCCCCCCCHHHHH----HHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEe
Q psy5142 276 ALLKISDIKEPVSREDIR----EVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEV 351 (410)
Q Consensus 276 ~~l~v~nL~~~~t~edLk----~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~ 351 (410)
..|+|.|||.+.+...|+ .++..+|. .|..| . .++|+|+|.+++.|..|.+.| .+-.+=|..|.|+.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGG---kVl~v--~--~~tAilrF~~~~~A~RA~KRm--egEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGG---KVLSV--S--GGTAILRFPNQEFAERAQKRM--EGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT-----EEE------TT-EEEEESSHHHHHHHHHHH--TT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCC---EEEEE--e--CCEEEEEeCCHHHHHHHHHhh--cccccccceEEEEE
Confidence 479999999988766555 45556762 45443 2 478999999999999999999 45556688888886
Q ss_pred c
Q psy5142 352 V 352 (410)
Q Consensus 352 l 352 (410)
.
T Consensus 74 ~ 74 (90)
T PF11608_consen 74 S 74 (90)
T ss_dssp S
T ss_pred c
Confidence 6
No 161
>KOG0106|consensus
Probab=96.88 E-value=0.0011 Score=61.23 Aligned_cols=67 Identities=12% Similarity=0.201 Sum_probs=57.4
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEe
Q psy5142 277 LLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEV 351 (410)
Q Consensus 277 ~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~ 351 (410)
-+||.+||+.+.+.||..+|..|| .+..|++.. ++|||.|.+.-+|..|+..+ ++.++.|..+.++.
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg----~~~d~~mk~--gf~fv~fed~rda~Dav~~l--~~~~l~~e~~vve~ 69 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYG----KIPDADMKN--GFGFVEFEDPRDADDAVHDL--DGKELCGERLVVEH 69 (216)
T ss_pred ceeecccCCccchhHHHHHHhhcc----ccccceeec--ccceeccCchhhhhcccchh--cCceecceeeeeec
Confidence 478999999999999999999999 898888876 56799999999999999999 56777776644443
No 162
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.83 E-value=0.0036 Score=48.81 Aligned_cols=58 Identities=22% Similarity=0.356 Sum_probs=39.1
Q ss_pred eeeEeecCCCCCCHHHHHHHHhhcc-CCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 120 QSLYVKYIPVDATLDDIKDFFKKNT-SEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 120 rtv~V~~lp~~~t~~~L~~~F~~~~-~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
..|||.|||.+.+...|+.-+++.. +|.|.|.+|. .+.|+|.|.+++.|.+|.+.++|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~--------------~~tAilrF~~~~~A~RA~KRmeg 61 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS--------------GGTAILRFPNQEFAERAQKRMEG 61 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----------------TT-EEEEESSHHHHHHHHHHHTT
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe--------------CCEEEEEeCCHHHHHHHHHhhcc
Confidence 5799999999988877664444321 1357888772 46799999999999999999986
No 163
>KOG4660|consensus
Probab=96.73 E-value=0.0011 Score=67.84 Aligned_cols=63 Identities=24% Similarity=0.272 Sum_probs=53.8
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC-ceEEEEeCChhHHHHHHHHhcCCCeEEcCe
Q psy5142 277 LLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE-PTAFVRYKKENNAEAVLKALGSKEIVIKDV 345 (410)
Q Consensus 277 ~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~-~~afV~F~~~e~A~~Al~~l~~~~~~i~g~ 345 (410)
.|.|.|||.+++.++|..+|+.|| +|+.|...+.. +..||+|-+.-+|+.|+++| +...|.|+
T Consensus 77 ~L~v~nl~~~Vsn~~L~~~f~~yG----eir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l--~~~~~~~~ 140 (549)
T KOG4660|consen 77 TLVVFNLPRSVSNDTLLRIFGAYG----EIREIRETPNKRGIVFVEFYDVRDAERALKAL--NRREIAGK 140 (549)
T ss_pred eEEEEecCCcCCHHHHHHHHHhhc----chhhhhcccccCceEEEEEeehHhHHHHHHHH--HHHHhhhh
Confidence 678999999999999999999999 99998877654 45999999999999999999 44444443
No 164
>KOG0151|consensus
Probab=96.65 E-value=0.0024 Score=67.12 Aligned_cols=71 Identities=18% Similarity=0.232 Sum_probs=59.2
Q ss_pred hccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 116 DLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 116 ~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
+.....|||+||++.++++.|...|..| |+|.+|.+.-...-- .....+.|+||-|-+..+|++|++.++|
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrf----gPlasvKimwpRtEe-Ek~r~r~cgfvafmnR~D~era~k~lqg 241 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRF----GPLASVKIMWPRTEE-EKRRERNCGFVAFMNRADAERALKELQG 241 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhccc----Ccccceeeecccchh-hhccccccceeeehhhhhHHHHHHHhcc
Confidence 4556789999999999999999999999 999999886443210 0115688999999999999999999997
No 165
>KOG4454|consensus
Probab=96.61 E-value=0.0014 Score=59.84 Aligned_cols=90 Identities=14% Similarity=0.194 Sum_probs=74.0
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCc----eEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEE
Q psy5142 274 TGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEP----TAFVRYKKENNAEAVLKALGSKEIVIKDVKVSI 349 (410)
Q Consensus 274 ~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~----~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v 349 (410)
...+|+|.|+...++++-|.++|-+-| .|..|.++.+.. +|||.|.++.+..-|++.+ +++.+-+.++.+
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaG----PV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~--ng~~l~~~e~q~ 81 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAG----PVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLE--NGDDLEEDEEQR 81 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccC----ceEEEeCCCCccCCCceeeeecccccchhhhhhhc--ccchhccchhhc
Confidence 345899999999999999999999999 999998887643 5999999999999999999 678888888888
Q ss_pred EecCchHHHHHHHHhHHHHH
Q psy5142 350 EVVTGEEEQTVLDRMKIDIF 369 (410)
Q Consensus 350 ~~l~g~eE~~yw~k~~~~~~ 369 (410)
.+-.|..-..-.+.+..++.
T Consensus 82 ~~r~G~shapld~r~~~ei~ 101 (267)
T KOG4454|consen 82 TLRCGNSHAPLDERVTEEIL 101 (267)
T ss_pred ccccCCCcchhhhhcchhhh
Confidence 88887755544444444443
No 166
>KOG0151|consensus
Probab=96.54 E-value=0.0048 Score=64.88 Aligned_cols=69 Identities=14% Similarity=0.297 Sum_probs=58.4
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeC---------CCceEEEEeCChhHHHHHHHHhcCCCeEEcCe
Q psy5142 275 GALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNV---------GEPTAFVRYKKENNAEAVLKALGSKEIVIKDV 345 (410)
Q Consensus 275 g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~---------g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~ 345 (410)
-+.|++.||++.++++.|-..|+.|| .|..|.+.= +..+|||-|-+..+|++|++.| +++.+.+.
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfg----PlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~l--qg~iv~~~ 247 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFG----PLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKEL--QGIIVMEY 247 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccC----cccceeeecccchhhhccccccceeeehhhhhHHHHHHHh--cceeeeee
Confidence 47899999999999999999999999 888877652 3446999999999999999999 66777666
Q ss_pred EEEE
Q psy5142 346 KVSI 349 (410)
Q Consensus 346 ~v~v 349 (410)
.+++
T Consensus 248 e~K~ 251 (877)
T KOG0151|consen 248 EMKL 251 (877)
T ss_pred eeee
Confidence 5554
No 167
>KOG1548|consensus
Probab=96.52 E-value=0.0095 Score=57.90 Aligned_cols=79 Identities=16% Similarity=0.204 Sum_probs=60.6
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCC----CCCeeEEEeeCC-----CceEEEEeCChhHHHHHHHHhcCCCeEE
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTD----DQEIVFIEFNVG-----EPTAFVRYKKENNAEAVLKALGSKEIVI 342 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~----~~~V~~V~~~~g-----~~~afV~F~~~e~A~~Al~~l~~~~~~i 342 (410)
...++.|||.|||.++|.+.+.++|++||+- ...--.|.+-+. ++.|.+.|-..++..-|+..| ++..+
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~il--De~~~ 208 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKIL--DEDEL 208 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHh--Ccccc
Confidence 3456789999999999999999999999911 011112333332 234899999999999999999 56788
Q ss_pred cCeEEEEEec
Q psy5142 343 KDVKVSIEVV 352 (410)
Q Consensus 343 ~g~~v~v~~l 352 (410)
+|+.|+|+.+
T Consensus 209 rg~~~rVerA 218 (382)
T KOG1548|consen 209 RGKKLRVERA 218 (382)
T ss_pred cCcEEEEehh
Confidence 8999999876
No 168
>KOG4210|consensus
Probab=96.28 E-value=0.002 Score=62.54 Aligned_cols=62 Identities=23% Similarity=0.378 Sum_probs=57.1
Q ss_pred ceeeE-eecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHh
Q psy5142 119 AQSLY-VKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNE 188 (410)
Q Consensus 119 ~rtv~-V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~ 188 (410)
..++| |.+|+..+|.++|..+|..+ |.|..|+++.+..++ ..+||+||.|.+...+..++..
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~----~~i~~~r~~~~~~s~----~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSS----GEITSVRLPTDEESG----DSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cccceeecccccccchHHHhhhccCc----CcceeeccCCCCCcc----chhhhhhhhhhhchhHHHHhhc
Confidence 45666 99999999999999999999 999999999998886 8999999999999999999985
No 169
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.26 E-value=0.019 Score=42.42 Aligned_cols=54 Identities=24% Similarity=0.382 Sum_probs=43.1
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcC--CCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHh
Q psy5142 277 LLKISDIKEPVSREDIREVLEKVQ--TDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKAL 335 (410)
Q Consensus 277 ~l~v~nL~~~~t~edLk~~F~~~G--~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l 335 (410)
.|+|.|+. +.+-+||+.+|..|. ..+..|.||+ +.+|-|.|.+.+.|.+||.+|
T Consensus 7 avhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWId----DtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 7 AVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWID----DTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEec----CCcEEEEECCHHHHHHHHHcC
Confidence 58899985 578899999999992 1134677764 477999999999999999865
No 170
>KOG1995|consensus
Probab=96.22 E-value=0.0057 Score=59.75 Aligned_cols=76 Identities=11% Similarity=0.145 Sum_probs=60.0
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCe------------eEEEeeC--CCceEEEEeCChhHHHHHHHHhcC
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEI------------VFIEFNV--GEPTAFVRYKKENNAEAVLKALGS 337 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V------------~~V~~~~--g~~~afV~F~~~e~A~~Al~~l~~ 337 (410)
......+||.+||..++..+|-++|.+++ .| .|.+..+ .+..|-|.|.++..|+.|+.-+
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg----~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~-- 136 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCG----VIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWF-- 136 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcc----eeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhh--
Confidence 44566899999999999999999999999 33 1122222 2345999999999999999999
Q ss_pred CCeEEcCeEEEEEecC
Q psy5142 338 KEIVIKDVKVSIEVVT 353 (410)
Q Consensus 338 ~~~~i~g~~v~v~~l~ 353 (410)
.+..+.+..|+|.+++
T Consensus 137 agkdf~gn~ikvs~a~ 152 (351)
T KOG1995|consen 137 AGKDFCGNTIKVSLAE 152 (351)
T ss_pred ccccccCCCchhhhhh
Confidence 5667788888888775
No 171
>KOG4307|consensus
Probab=96.06 E-value=0.0097 Score=62.54 Aligned_cols=66 Identities=26% Similarity=0.359 Sum_probs=55.7
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCce-EEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKI-TNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I-~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
.-.|.|-+.|+|++++.+||.+||..| -.+ .+|++++..++ ...|-|-|-|++.++|..|+..+++
T Consensus 865 pGp~V~~~~n~Pf~v~l~dI~~FF~dY----~~~p~sI~~r~nd~G-----~pTGe~mvAfes~~eAr~A~~dl~~ 931 (944)
T KOG4307|consen 865 PGPRVLSCNNFPFDVTLEDIVEFFNDY----EPDPNSIRIRRNDDG-----VPTGECMVAFESQEEARRASMDLDG 931 (944)
T ss_pred CCCeEEEecCCCccccHHHHHHHhccc----ccCCCceeEeecCCC-----CcccceeEeecCHHHHHhhhhcccc
Confidence 334578899999999999999999999 332 46677766665 8999999999999999999998886
No 172
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.02 E-value=0.025 Score=54.80 Aligned_cols=72 Identities=14% Similarity=0.224 Sum_probs=56.9
Q ss_pred CeEEEEeCCCCCCCHHH----H--HHHHHhcCCCCCCeeEEEeeCCCc---------eEEEEeCChhHHHHHHHHhcCCC
Q psy5142 275 GALLKISDIKEPVSRED----I--REVLEKVQTDDQEIVFIEFNVGEP---------TAFVRYKKENNAEAVLKALGSKE 339 (410)
Q Consensus 275 g~~l~v~nL~~~~t~ed----L--k~~F~~~G~~~~~V~~V~~~~g~~---------~afV~F~~~e~A~~Al~~l~~~~ 339 (410)
..++||.|||+.+..|. | .++|++|| .|..|-+.+-.. .-||.|.+.++|..||..+ ++
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyG----kI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~v--Dg 187 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYG----KIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEV--DG 187 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhcc----ceeEEEecccccccccccccceEEEEecchHHHHHHHHHh--cc
Confidence 45789999998886554 3 46899999 998887765321 1399999999999999999 67
Q ss_pred eEEcCeEEEEEec
Q psy5142 340 IVIKDVKVSIEVV 352 (410)
Q Consensus 340 ~~i~g~~v~v~~l 352 (410)
..++|+.|+..--
T Consensus 188 s~~DGr~lkatYG 200 (480)
T COG5175 188 SLLDGRVLKATYG 200 (480)
T ss_pred ccccCceEeeecC
Confidence 8889998887654
No 173
>KOG2314|consensus
Probab=95.99 E-value=0.014 Score=60.14 Aligned_cols=66 Identities=26% Similarity=0.354 Sum_probs=55.4
Q ss_pred cceeeEeecCCCC--CCHHH----HHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 118 IAQSLYVKYIPVD--ATLDD----IKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 118 ~~rtv~V~~lp~~--~t~~~----L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
.+..|+|.|.|.- .-.+- |..+|+++ |+|.++.+|-+..+ ..+|++|++|.++.+|+.|++.++|
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~----gk~vn~~~P~~e~g-----gtkG~lf~E~~~~~~A~~aVK~l~G 127 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKA----GKIVNMYYPIDEEG-----GTKGYLFVEYASMRDAKKAVKSLNG 127 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhh----ccccceeeccCccC-----CeeeEEEEEecChhhHHHHHHhccc
Confidence 4578999999953 33344 45789999 99999999988877 6899999999999999999999998
Q ss_pred C
Q psy5142 192 K 192 (410)
Q Consensus 192 ~ 192 (410)
+
T Consensus 128 ~ 128 (698)
T KOG2314|consen 128 K 128 (698)
T ss_pred c
Confidence 3
No 174
>KOG3152|consensus
Probab=95.97 E-value=0.0045 Score=57.84 Aligned_cols=63 Identities=16% Similarity=0.264 Sum_probs=53.8
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCc------------------eEEEEeCChhHHHHHHHHhcC
Q psy5142 276 ALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEP------------------TAFVRYKKENNAEAVLKALGS 337 (410)
Q Consensus 276 ~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~------------------~afV~F~~~e~A~~Al~~l~~ 337 (410)
-+|||.+||+.....-|+++|++|| .|-.|.+.+... .|+|+|.+...|..+...||
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yG----eVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Ln- 149 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYG----EVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLN- 149 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhcc----ccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhC-
Confidence 4899999999999999999999999 998888775322 28999999999999999994
Q ss_pred CCeEEcC
Q psy5142 338 KEIVIKD 344 (410)
Q Consensus 338 ~~~~i~g 344 (410)
+..|+|
T Consensus 150 -n~~Igg 155 (278)
T KOG3152|consen 150 -NTPIGG 155 (278)
T ss_pred -CCccCC
Confidence 455665
No 175
>KOG0226|consensus
Probab=95.95 E-value=0.012 Score=55.02 Aligned_cols=73 Identities=7% Similarity=0.134 Sum_probs=57.7
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEee------CCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEE
Q psy5142 275 GALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFN------VGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVS 348 (410)
Q Consensus 275 g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~------~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~ 348 (410)
...||...|.-+++++-|...|.+|. .-....+. ..+++|||.|.++.++..|+..| ++--++.++|+
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfp----sf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem--~gkyVgsrpik 263 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFP----SFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREM--NGKYVGSRPIK 263 (290)
T ss_pred cceeecccccccccHHHHHHHHHhcc----chhhccccccccccccccceeeeecCHHHHHHHHHhh--cccccccchhH
Confidence 45777888999999999999999998 33222222 23456999999999999999999 67788888988
Q ss_pred EEecC
Q psy5142 349 IEVVT 353 (410)
Q Consensus 349 v~~l~ 353 (410)
++.-+
T Consensus 264 lRkS~ 268 (290)
T KOG0226|consen 264 LRKSE 268 (290)
T ss_pred hhhhh
Confidence 87544
No 176
>KOG4676|consensus
Probab=95.73 E-value=0.0095 Score=58.72 Aligned_cols=175 Identities=13% Similarity=0.137 Sum_probs=105.2
Q ss_pred eeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcccccc
Q psy5142 120 QSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFNEN 199 (410)
Q Consensus 120 rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~~~ 199 (410)
..|.|.||.+.+|.++++.+|... |.|..++|....+.- +-....-.|||-|.+...+..|--+-+ ..|.+.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~l----GkI~elrlyp~~~d~-~~pv~sRtcyVkf~d~~sv~vaQhLtn---tvfvdr 79 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNL----GKIPELRLYPNVDDS-KIPVISRTCYVKFLDSQSVTVAQHLTN---TVFVDR 79 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhc----cccccccccCCCCCc-cCcceeeeEEEeccCCcceeHHhhhcc---ceeeee
Confidence 478899999999999999999999 999999876532210 001346789999999999888766655 344222
Q ss_pred ccch---------hhhh---hhhcc-cccccccCcc--cccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCC
Q psy5142 200 CEHK---------NAEK---FLNEN-KDKNLKFNEN--CEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEG 264 (410)
Q Consensus 200 ~~~~---------~~~k---~~~~~-~~~~~~~~g~--~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~ 264 (410)
.... ..+. +.+++ -+.-+.++|. ...+|...-. ..++
T Consensus 80 aliv~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh-------------------------~p~a--- 131 (479)
T KOG4676|consen 80 ALIVRPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINH-------------------------SPNA--- 131 (479)
T ss_pred eEEEEecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccC-------------------------Cccc---
Confidence 2111 0000 00100 0001111110 0011111000 0000
Q ss_pred CcccccCCCC----------CeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC--ceEEEEeCChhHHHHHH
Q psy5142 265 SKQVVLELPT----------GALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE--PTAFVRYKKENNAEAVL 332 (410)
Q Consensus 265 ~~~~~~~~~~----------g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~--~~afV~F~~~e~A~~Al 332 (410)
.-..+.+++ ..++++.+|+..+-..++-+.|..+| +|.|..+..+. ..|-|.|....+...|+
T Consensus 132 -ilktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~G----ev~ya~~ask~~s~~c~~sf~~qts~~hal 206 (479)
T KOG4676|consen 132 -ILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKG----EVSYAHTASKSRSSSCSHSFRKQTSSKHAL 206 (479)
T ss_pred -eecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcc----hhhhhhhhccCCCcchhhhHhhhhhHHHHH
Confidence 000000110 14677888999998999999999999 99887776543 45889999988888888
Q ss_pred HHh
Q psy5142 333 KAL 335 (410)
Q Consensus 333 ~~l 335 (410)
.++
T Consensus 207 r~~ 209 (479)
T KOG4676|consen 207 RSH 209 (479)
T ss_pred Hhc
Confidence 876
No 177
>KOG1995|consensus
Probab=95.62 E-value=0.019 Score=56.25 Aligned_cols=67 Identities=18% Similarity=0.174 Sum_probs=55.2
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEE--------EEEcccCcccccccccccEEEEEecCHHHHHHHHHh
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITN--------IIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNE 188 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~--------v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~ 188 (410)
...-||||.++|..+|.++|.++|.+| |.|.. |.|-+++.++ ..||-|.|+|+++-.|+.|+.-
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qc----g~ikrnK~t~kPki~~y~dkeT~----~~KGeatvS~~D~~~akaai~~ 135 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQC----GVIKRNKRTGKPKIKIYTDKETG----APKGEATVSYEDPPAAKAAIEW 135 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhc----ceeccCCCCCCcchhcccccccc----CcCCceeeeecChhhhhhhhhh
Confidence 456799999999999999999999999 76632 2233333343 7899999999999999999999
Q ss_pred cCC
Q psy5142 189 NKD 191 (410)
Q Consensus 189 ~~g 191 (410)
+++
T Consensus 136 ~ag 138 (351)
T KOG1995|consen 136 FAG 138 (351)
T ss_pred hcc
Confidence 986
No 178
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.56 E-value=0.039 Score=44.91 Aligned_cols=69 Identities=16% Similarity=0.069 Sum_probs=45.4
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEE-EcccCcc--cccccccccEEEEEecCHHHHHHHHHhcC
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNII-MRNYQDK--LANQKKFKGSIFVTFDNKENAEKFLNENK 190 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~-l~~~~~~--~~~~~~~kG~afVeF~~~e~A~~Al~~~~ 190 (410)
...+.|.|=|||.. ....|.+.|++| |.|.+.. +.+...+ ..+...-.....|+|+++.+|.+||....
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~----G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG 75 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSF----GTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNG 75 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCC----S-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTT
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhc----ceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCC
Confidence 34677999999988 568899999999 9998875 2222110 00011346789999999999999999865
No 179
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.28 E-value=0.036 Score=53.74 Aligned_cols=68 Identities=21% Similarity=0.431 Sum_probs=51.7
Q ss_pred ccceeeEeecCCCCCCHHHH------HHHHhhccCCCCceEEEEEcccCccccccccccc--EEEEEecCHHHHHHHHHh
Q psy5142 117 LIAQSLYVKYIPVDATLDDI------KDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKG--SIFVTFDNKENAEKFLNE 188 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L------~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG--~afVeF~~~e~A~~Al~~ 188 (410)
++..-|||-+||..+..+++ .+||.+| |.|..|.+-+...... .-.+ -+||+|.+.|+|..+|..
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQy----GkI~KIvvNkkt~s~n---st~~h~gvYITy~~kedAarcIa~ 184 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQY----GKIKKIVVNKKTSSLN---STASHAGVYITYSTKEDAARCIAE 184 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhc----cceeEEEecccccccc---cccccceEEEEecchHHHHHHHHH
Confidence 45677999999998776663 4899999 9999998865432210 1122 259999999999999999
Q ss_pred cCC
Q psy5142 189 NKD 191 (410)
Q Consensus 189 ~~g 191 (410)
.+|
T Consensus 185 vDg 187 (480)
T COG5175 185 VDG 187 (480)
T ss_pred hcc
Confidence 986
No 180
>KOG4209|consensus
Probab=95.19 E-value=0.027 Score=52.99 Aligned_cols=73 Identities=14% Similarity=0.130 Sum_probs=60.7
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCeE
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDVK 346 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~ 346 (410)
.....++|.|+...++.+.+..+|+.|| .|..|+++.+ +++|||.|.+.+.++.|+. | ++..|.|..
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg----~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l--~gs~i~~~~ 171 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCG----GINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-L--DGSEIPGPA 171 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccC----CccceeeeccccCCCcceeEEEecccHhhhHHHhh-c--CCccccccc
Confidence 3445799999999999999999999999 8876666543 3479999999999999999 7 577888888
Q ss_pred EEEEec
Q psy5142 347 VSIEVV 352 (410)
Q Consensus 347 v~v~~l 352 (410)
+.+...
T Consensus 172 i~vt~~ 177 (231)
T KOG4209|consen 172 IEVTLK 177 (231)
T ss_pred ceeeee
Confidence 888764
No 181
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.18 E-value=0.12 Score=44.76 Aligned_cols=57 Identities=19% Similarity=0.357 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEecCch
Q psy5142 290 EDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVTGE 355 (410)
Q Consensus 290 edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l~g~ 355 (410)
.+|-+.|..|| +|.-|++.. +.-+|.|.+-++|-+|+.. ++++++|+.|+|++.+.+
T Consensus 51 ~~ll~~~~~~G----evvLvRfv~--~~mwVTF~dg~sALaals~---dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 51 DELLQKFAQYG----EVVLVRFVG--DTMWVTFRDGQSALAALSL---DGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHHCCS-----ECEEEEET--TCEEEEESSCHHHHHHHHG---CCSEETTEEEEEEE----
T ss_pred HHHHHHHHhCC----ceEEEEEeC--CeEEEEECccHHHHHHHcc---CCcEECCEEEEEEeCCcc
Confidence 36777888899 898888887 4689999999988888876 589999999999998755
No 182
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=95.18 E-value=0.14 Score=41.45 Aligned_cols=59 Identities=19% Similarity=0.261 Sum_probs=47.8
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhc
Q psy5142 276 ALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALG 336 (410)
Q Consensus 276 ~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~ 336 (410)
++|-|+|||-..|.++|.+++..... -...++.++.+ .++|||-|.+++.|....+.++
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~--g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~ 66 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFK--GKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFN 66 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhcc--CcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHc
Confidence 57889999999999999999987421 15666666543 4579999999999999999994
No 183
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.07 E-value=0.061 Score=41.99 Aligned_cols=56 Identities=16% Similarity=0.354 Sum_probs=40.7
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhc
Q psy5142 274 TGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALG 336 (410)
Q Consensus 274 ~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~ 336 (410)
+..+.+|. .|......||.++|+.|| .+.|.+| ++++|||.....+.|..|+..+.
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG--~I~VsWi----~dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFG--QIYVSWI----NDTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCC--CEEEEEE----CTTEEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCC--cEEEEEE----cCCcEEEEeecHHHHHHHHHHhc
Confidence 34455565 799999999999999999 2233444 45889999999999999999883
No 184
>KOG0129|consensus
Probab=95.06 E-value=0.05 Score=55.67 Aligned_cols=64 Identities=16% Similarity=0.128 Sum_probs=55.9
Q ss_pred cceeeEeecCCCCCCHHHHHHHHh-hccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFK-KNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNEN 189 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~-~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~ 189 (410)
..|||||++||.-+|.++|..+|. -| |-|..|-|=.|+.=+ -++|.+=|+|.+..+-.+||..-
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~ly----GgV~yaGIDtD~k~K----YPkGaGRVtFsnqqsYi~AIsar 433 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLF----GGVLYVGIDTDPKLK----YPKGAGRVTFSNQQAYIKAISAR 433 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhc----CceEEEEeccCcccC----CCCCcceeeecccHHHHHHHhhh
Confidence 368999999999999999999999 67 999999987664322 68999999999999999999763
No 185
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.02 E-value=0.12 Score=42.05 Aligned_cols=66 Identities=8% Similarity=0.083 Sum_probs=46.7
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEE-------------eeCCCceEEEEeCChhHHHHHHHHhcCCCeEE
Q psy5142 276 ALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIE-------------FNVGEPTAFVRYKKENNAEAVLKALGSKEIVI 342 (410)
Q Consensus 276 ~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~-------------~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i 342 (410)
+-|.|.|.|+. .-..+-..|++|| +|.... .+.+..--.|+|+++.+|.+||.. +|..+
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G----~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~---NG~i~ 78 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFG----TILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK---NGTIF 78 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-----EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT---TTEEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcc----eEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh---CCeEE
Confidence 35778888887 4567888999999 885543 445556689999999999999876 58889
Q ss_pred cCeEEEE
Q psy5142 343 KDVKVSI 349 (410)
Q Consensus 343 ~g~~v~v 349 (410)
+|..+-.
T Consensus 79 ~g~~mvG 85 (100)
T PF05172_consen 79 SGSLMVG 85 (100)
T ss_dssp TTCEEEE
T ss_pred cCcEEEE
Confidence 8876643
No 186
>KOG3152|consensus
Probab=94.48 E-value=0.027 Score=52.79 Aligned_cols=70 Identities=16% Similarity=0.227 Sum_probs=54.5
Q ss_pred ceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcc--------cccccccccEEEEEecCHHHHHHHHHhcC
Q psy5142 119 AQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDK--------LANQKKFKGSIFVTFDNKENAEKFLNENK 190 (410)
Q Consensus 119 ~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~--------~~~~~~~kG~afVeF~~~e~A~~Al~~~~ 190 (410)
.-.||++++|+.+...-|+++|+.| |.|-.|.|...... ++.-...-.-++|||.+.-.|..+...+|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~y----GeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Ln 149 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQY----GEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLN 149 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhc----cccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhC
Confidence 3579999999999999999999999 99999998655433 10000111227899999999999999999
Q ss_pred CC
Q psy5142 191 DK 192 (410)
Q Consensus 191 g~ 192 (410)
++
T Consensus 150 n~ 151 (278)
T KOG3152|consen 150 NT 151 (278)
T ss_pred CC
Confidence 73
No 187
>KOG0115|consensus
Probab=93.54 E-value=0.1 Score=49.04 Aligned_cols=78 Identities=12% Similarity=0.123 Sum_probs=59.8
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeC-CCceEEEEeCChhHHHHHHHHhcCCC--eEEcCeEEEEE
Q psy5142 274 TGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNV-GEPTAFVRYKKENNAEAVLKALGSKE--IVIKDVKVSIE 350 (410)
Q Consensus 274 ~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~-g~~~afV~F~~~e~A~~Al~~l~~~~--~~i~g~~v~v~ 350 (410)
....|+|.||+.-++.+.|.+.|+.||..+-.|.+||+.. ....++|.|...-.|.+|+.....++ .+..+.++.|.
T Consensus 30 ~~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 30 MHAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred ccceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 3378999999999999999999999995445667777653 33469999999999999999885444 34556665554
Q ss_pred e
Q psy5142 351 V 351 (410)
Q Consensus 351 ~ 351 (410)
.
T Consensus 110 P 110 (275)
T KOG0115|consen 110 P 110 (275)
T ss_pred h
Confidence 3
No 188
>KOG1855|consensus
Probab=93.49 E-value=0.054 Score=54.21 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=50.2
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC-------------------CceEEEEeCChhHHHHHHHH
Q psy5142 274 TGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG-------------------EPTAFVRYKKENNAEAVLKA 334 (410)
Q Consensus 274 ~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g-------------------~~~afV~F~~~e~A~~Al~~ 334 (410)
+..+|.+.|||.+-+-+.|.++|+.+| .|+.|.+-.- ...|+|+|...+.|.+|.+.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G----~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVG----SIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhccc----ceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 456788999999999999999999999 9988877532 11389999999999999999
Q ss_pred hc
Q psy5142 335 LG 336 (410)
Q Consensus 335 l~ 336 (410)
++
T Consensus 306 ~~ 307 (484)
T KOG1855|consen 306 LN 307 (484)
T ss_pred hc
Confidence 83
No 189
>KOG4676|consensus
Probab=93.15 E-value=0.16 Score=50.38 Aligned_cols=71 Identities=6% Similarity=0.238 Sum_probs=52.2
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC---------CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEE
Q psy5142 277 LLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG---------EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKV 347 (410)
Q Consensus 277 ~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g---------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v 347 (410)
+|.|.||.+.++.+++..+|.-+| .|..+.+.+. ..+|||.|.+...+..|-... +-+.|+--.|
T Consensus 9 vIqvanispsat~dqm~tlFg~lG----kI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLt--ntvfvdrali 82 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLG----KIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLT--NTVFVDRALI 82 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhcc----ccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhc--cceeeeeeEE
Confidence 899999999999999999999999 7877665542 125999999999888876554 3344443333
Q ss_pred EEEecC
Q psy5142 348 SIEVVT 353 (410)
Q Consensus 348 ~v~~l~ 353 (410)
.+=.+.
T Consensus 83 v~p~~~ 88 (479)
T KOG4676|consen 83 VRPYGD 88 (479)
T ss_pred EEecCC
Confidence 333333
No 190
>KOG0128|consensus
Probab=93.08 E-value=0.048 Score=58.79 Aligned_cols=63 Identities=17% Similarity=0.254 Sum_probs=58.3
Q ss_pred ceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcC
Q psy5142 119 AQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENK 190 (410)
Q Consensus 119 ~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~ 190 (410)
...|+|+|.|+..|.++++.+++.+ |.+.+++++....+ +++|-|||.|.++.+|.+++....
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~----gn~~~~~~vt~r~g-----kpkg~a~v~y~~ea~~s~~~~s~d 798 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKT----GNVTSLRLVTVRAG-----KPKGKARVDYNTEADASRKVASVD 798 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhcccc----CCccccchhhhhcc-----ccccceeccCCCcchhhhhcccch
Confidence 5679999999999999999999999 99999998888777 899999999999999999987766
No 191
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.07 E-value=0.2 Score=43.12 Aligned_cols=60 Identities=13% Similarity=0.163 Sum_probs=47.6
Q ss_pred hccceeeEeecCCCCC----CHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcC
Q psy5142 116 DLIAQSLYVKYIPVDA----TLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENK 190 (410)
Q Consensus 116 ~~~~rtv~V~~lp~~~----t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~ 190 (410)
+..-.||.|+-|...+ +...|...++.| |+|.+|.+. .+-.|.|.|.+..+|-+|+..++
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~f----GpI~SVT~c-----------GrqsavVvF~d~~SAC~Av~Af~ 146 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVF----GPIQSVTLC-----------GRQSAVVVFKDITSACKAVSAFQ 146 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhc----CCcceeeec-----------CCceEEEEehhhHHHHHHHHhhc
Confidence 4556799998877663 334455667889 999999873 36679999999999999999987
No 192
>PF09421 FRQ: Frequency clock protein; InterPro: IPR018554 The frequency clock protein, is the central component of the frq-based circadian negative feedback loop, regulates various aspects of the circadian clock in Neurospora crassa []. This protein has been shown to interact with itself via a coiled-coil [].
Probab=92.76 E-value=0.13 Score=56.72 Aligned_cols=49 Identities=27% Similarity=0.493 Sum_probs=45.7
Q ss_pred CCeEehHHHHhhHHHHhccCcHHHHHHHHhhcCCceEEEecCccceecCC
Q psy5142 53 DGWVELTTMLKFARLAKMTTEAKVIVDALKKSTSKLIEVNEDGTKIRRNP 102 (410)
Q Consensus 53 ~g~v~l~~l~~F~r~k~l~~d~~~i~~Al~~~~S~~levsed~~~vrR~~ 102 (410)
+|||.|-+||..-.|--|..+++-|..||.+ .|..++|+.||.+||=+.
T Consensus 476 eGWVYLNLL~NmAQLHiiNVTPdFVRsAV~E-~StKfQLSpDGrKIRWRG 524 (989)
T PF09421_consen 476 EGWVYLNLLCNMAQLHIINVTPDFVRSAVSE-KSTKFQLSPDGRKIRWRG 524 (989)
T ss_pred ccceehHHHHHHHHHHhhccCHHHHHHHHHh-cccceeeCCCCCeeeecC
Confidence 6999999999999999999999999999998 689999999999998653
No 193
>KOG2591|consensus
Probab=92.66 E-value=0.13 Score=53.00 Aligned_cols=77 Identities=10% Similarity=0.243 Sum_probs=61.3
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHh--cCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEE
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEK--VQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSI 349 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~--~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v 349 (410)
..+-||+.++-||+.+-.|++|.+|+- +. .+..+.|... ..=||.|.+..+|+.|.+.|...-.++.|+.|..
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encP----k~iscefa~N-~nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCP----KVISCEFAHN-DNWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCC----Cceeeeeeec-CceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 345699999999999999999999985 55 5555555442 3469999999999999999965566778888877
Q ss_pred EecC
Q psy5142 350 EVVT 353 (410)
Q Consensus 350 ~~l~ 353 (410)
+|..
T Consensus 247 RIKa 250 (684)
T KOG2591|consen 247 RIKA 250 (684)
T ss_pred hhhh
Confidence 7643
No 194
>KOG4849|consensus
Probab=92.24 E-value=0.42 Score=46.79 Aligned_cols=77 Identities=9% Similarity=0.093 Sum_probs=56.1
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCC-CCCeeEEEeeC---CCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEE
Q psy5142 274 TGALLKISDIKEPVSREDIREVLEKVQTD-DQEIVFIEFNV---GEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSI 349 (410)
Q Consensus 274 ~g~~l~v~nL~~~~t~edLk~~F~~~G~~-~~~V~~V~~~~---g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v 349 (410)
+...+||.||-|-+|++||-+.+...|.. .++++|..--. .+++|.|...+..+.++.++.| -..+|.|+..+|
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiL--P~k~iHGQ~P~V 156 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEIL--PTKTIHGQSPTV 156 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhc--ccceecCCCCee
Confidence 34678999999999999999999988822 13444433222 2446889999988888888888 567888887766
Q ss_pred Eec
Q psy5142 350 EVV 352 (410)
Q Consensus 350 ~~l 352 (410)
.-.
T Consensus 157 ~~~ 159 (498)
T KOG4849|consen 157 LSY 159 (498)
T ss_pred ecc
Confidence 544
No 195
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=92.09 E-value=0.95 Score=33.45 Aligned_cols=58 Identities=22% Similarity=0.290 Sum_probs=43.7
Q ss_pred ceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhc
Q psy5142 119 AQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNEN 189 (410)
Q Consensus 119 ~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~ 189 (410)
.-.|+|.|+. +++.++|+.||..|+... ....|..+-+ .+|-|.|.+.+.|.+||..+
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~-~~~~IEWIdD-----------tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEE-GPFRIEWIDD-----------TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccC-CCceEEEecC-----------CcEEEEECCHHHHHHHHHcC
Confidence 4579999985 478899999999985432 3456665543 24789999999999999753
No 196
>KOG3293|consensus
Probab=91.53 E-value=0.55 Score=38.89 Aligned_cols=15 Identities=13% Similarity=0.206 Sum_probs=8.0
Q ss_pred CeEEcCeEEEEEecC
Q psy5142 339 EIVIKDVKVSIEVVT 353 (410)
Q Consensus 339 ~~~i~g~~v~v~~l~ 353 (410)
..-|.|..|++-.+.
T Consensus 58 EcYirGttIkylri~ 72 (134)
T KOG3293|consen 58 ECYIRGTTIKYLRIP 72 (134)
T ss_pred eeEEecceeEEEecc
Confidence 345556666555444
No 197
>KOG2416|consensus
Probab=91.04 E-value=0.13 Score=53.57 Aligned_cols=64 Identities=16% Similarity=0.275 Sum_probs=54.8
Q ss_pred cceeeEeecCCCCCCHHHHHHHHh-hccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFK-KNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~-~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
....|||.||-.-+|.-.|++++. .+ |.|+...|= +-|..|||.|.+.++|......++| +.|
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtg----g~Vee~WmD----------kIKShCyV~yss~eEA~atr~Alhn--V~W 506 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTG----GNVEEFWMD----------KIKSHCYVSYSSVEEAAATREALHN--VQW 506 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhcc----CchHHHHHH----------HhhcceeEecccHHHHHHHHHHHhc--ccc
Confidence 457899999999999999999998 56 888877543 4567799999999999999999987 788
Q ss_pred c
Q psy5142 197 N 197 (410)
Q Consensus 197 ~ 197 (410)
+
T Consensus 507 P 507 (718)
T KOG2416|consen 507 P 507 (718)
T ss_pred C
Confidence 4
No 198
>KOG4849|consensus
Probab=90.60 E-value=0.24 Score=48.39 Aligned_cols=66 Identities=9% Similarity=0.058 Sum_probs=52.7
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCC--ceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcC
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDV--KITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENK 190 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G--~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~ 190 (410)
-....+||+||-|-+|.+||.+..... | .+..+.+-.+...+ .+||||.|...+...+++.++.+.
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~----G~~~~~dmKFFENR~NG----QSKG~AL~~~~SdAa~Kq~MeiLP 145 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQST----GLAQFADMKFFENRTNG----QSKGYALLVLNSDAAVKQTMEILP 145 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhh----hHHHHhhhhhhhcccCC----cccceEEEEecchHHHHHHHHhcc
Confidence 446789999999999999999888876 6 34444444444444 899999999999999999998887
No 199
>KOG2202|consensus
Probab=90.46 E-value=0.14 Score=48.22 Aligned_cols=49 Identities=20% Similarity=0.381 Sum_probs=40.2
Q ss_pred HHHHHHHh-hccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 134 DDIKDFFK-KNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 134 ~~L~~~F~-~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
++|...|+ +| |+|+++.+..+..- ...|-+||.|..+|+|++|++.+++
T Consensus 83 Ed~f~E~~~ky----gEiee~~Vc~Nl~~-----hl~GNVYV~f~~Ee~ae~a~~~lnn 132 (260)
T KOG2202|consen 83 EDVFTELEDKY----GEIEELNVCDNLGD-----HLVGNVYVKFRSEEDAEAALEDLNN 132 (260)
T ss_pred HHHHHHHHHHh----hhhhhhhhhcccch-----hhhhhhhhhcccHHHHHHHHHHHcC
Confidence 45555555 89 99999987766544 5789999999999999999999995
No 200
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=90.12 E-value=0.088 Score=55.43 Aligned_cols=7 Identities=57% Similarity=0.914 Sum_probs=2.6
Q ss_pred hHHhhhc
Q psy5142 44 FLQGEIK 50 (410)
Q Consensus 44 fl~~~~~ 50 (410)
|+..+++
T Consensus 178 ~i~~~ik 184 (556)
T PF05918_consen 178 FIVDEIK 184 (556)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 201
>KOG2416|consensus
Probab=89.17 E-value=0.48 Score=49.47 Aligned_cols=93 Identities=15% Similarity=0.244 Sum_probs=65.5
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCe--eEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEE---cCeEE
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQEI--VFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVI---KDVKV 347 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V--~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i---~g~~v 347 (410)
....+|+|.||-.-.|.-+|++++..-|+ .| .|+|-.+ +-|||.|.+.+.|.+.+.+| +++.+ |++.|
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg---~Vee~WmDkIK--ShCyV~yss~eEA~atr~Al--hnV~WP~sNPK~L 514 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGG---NVEEFWMDKIK--SHCYVSYSSVEEAAATREAL--HNVQWPPSNPKHL 514 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccC---chHHHHHHHhh--cceeEecccHHHHHHHHHHH--hccccCCCCCcee
Confidence 34579999999888899999999997551 33 2555444 56999999999999999999 55654 45667
Q ss_pred EEEecCchHHHHHHHHhHHHHHHHHH
Q psy5142 348 SIEVVTGEEEQTVLDRMKIDIFKRRQ 373 (410)
Q Consensus 348 ~v~~l~g~eE~~yw~k~~~~~~~~~~ 373 (410)
.+...+ ..+..|...-.++......
T Consensus 515 ~adf~~-~deld~hr~~led~~ae~~ 539 (718)
T KOG2416|consen 515 IADFVR-ADELDKHRNGLEDLEAELP 539 (718)
T ss_pred Eeeecc-hhHHHHHhccchhcccccc
Confidence 777665 4455555554555444433
No 202
>KOG2314|consensus
Probab=89.13 E-value=1.5 Score=45.70 Aligned_cols=73 Identities=15% Similarity=0.263 Sum_probs=55.0
Q ss_pred CeEEEEeCCCCCCC------HHHHHHHHHhcCCCCCCeeEEEeeCCC-----ceEEEEeCChhHHHHHHHHhcCCCeEEc
Q psy5142 275 GALLKISDIKEPVS------REDIREVLEKVQTDDQEIVFIEFNVGE-----PTAFVRYKKENNAEAVLKALGSKEIVIK 343 (410)
Q Consensus 275 g~~l~v~nL~~~~t------~edLk~~F~~~G~~~~~V~~V~~~~g~-----~~afV~F~~~e~A~~Al~~l~~~~~~i~ 343 (410)
..+|.|.|+|---. +.-|..+|+++| .|..+.|+... +..|++|.+..+|+.|++.++ |..++
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~g----k~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~--G~~ld 131 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAG----KIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLN--GKRLD 131 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhc----cccceeeccCccCCeeeEEEEEecChhhHHHHHHhcc--cceec
Confidence 35788999875322 355778899999 89888888432 347899999999999999994 44444
Q ss_pred -CeEEEEEecC
Q psy5142 344 -DVKVSIEVVT 353 (410)
Q Consensus 344 -g~~v~v~~l~ 353 (410)
++...+..+.
T Consensus 132 knHtf~v~~f~ 142 (698)
T KOG2314|consen 132 KNHTFFVRLFK 142 (698)
T ss_pred ccceEEeehhh
Confidence 6788888765
No 203
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=89.12 E-value=2.6 Score=34.94 Aligned_cols=63 Identities=17% Similarity=0.145 Sum_probs=47.1
Q ss_pred eeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCC
Q psy5142 121 SLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDK 192 (410)
Q Consensus 121 tv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~ 192 (410)
.+.+-..|+-++.++|..+.+.+. ..|..++|+++.. ..+=.+.+.|.+.++|..+...+||+
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~---~~i~~~riird~~------pnrymVLikF~~~~~Ad~Fy~~fNGk 77 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFR---EDIEHIRIIRDGT------PNRYMVLIKFRDQESADEFYEEFNGK 77 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhccc---ccEEEEEEeeCCC------CceEEEEEEECCHHHHHHHHHHhCCC
Confidence 344444455667777776666662 5788889988654 34667999999999999999999984
No 204
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=88.65 E-value=1.7 Score=34.07 Aligned_cols=54 Identities=22% Similarity=0.290 Sum_probs=39.7
Q ss_pred eeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcC
Q psy5142 121 SLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENK 190 (410)
Q Consensus 121 tv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~ 190 (410)
-||--.||.+.-..||.++|++| |.|. |..+ .-.+|||.....+.|..|+..+.
T Consensus 10 HVFhltFPkeWK~~DI~qlFspf----G~I~-VsWi-----------~dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPF----GQIY-VSWI-----------NDTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCC----CCEE-EEEE-----------CTTEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEeCchHhhhhhHHHHhccC----CcEE-EEEE-----------cCCcEEEEeecHHHHHHHHHHhc
Confidence 34544499999999999999999 9875 4333 23469999999999999998876
No 205
>KOG0115|consensus
Probab=88.44 E-value=0.45 Score=44.79 Aligned_cols=62 Identities=23% Similarity=0.218 Sum_probs=56.1
Q ss_pred eeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcC
Q psy5142 120 QSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENK 190 (410)
Q Consensus 120 rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~ 190 (410)
..|||.||+.-+..|.+..-|+.| |+|....+.-+... +..+-.+|+|...-.|.+|+....
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~f----g~~e~av~~vD~r~-----k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRF----GPIERAVAKVDDRG-----KPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhc----Cccchheeeecccc-----cccccchhhhhcchhHHHHHHHhc
Confidence 789999999999999999999999 99998887777666 678889999999999999998874
No 206
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=88.44 E-value=0.57 Score=42.21 Aligned_cols=70 Identities=11% Similarity=0.104 Sum_probs=43.9
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhh-ccCCCCce---EEEE--EcccCcccccccccccEEEEEecCHHHHHHHHHhcC
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKK-NTSEDVKI---TNII--MRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENK 190 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~-~~~~~G~I---~~v~--l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~ 190 (410)
.....|.|+.||+..|++++.+.+++ + +.- ..+. ........ ..-.-|||.|.+.+++..+...++
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l----~~~~~w~y~~g~~~~~~~~~----~~~SRaYi~F~~~~~~~~F~~~~~ 76 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWL----PDEWDWYYFQGKYGKKSFKP----PTYSRAYINFKNPEDLLEFRDRFD 76 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS------SSE---EEEEEEES-SSSTT----S--EEEEEEESSCHHHHHHHHHCT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhc----ccccceEEEecCCCCccCCC----CcceEEEEEeCCHHHHHHHHHhcC
Confidence 34568999999999999999987766 4 444 3333 11111110 123459999999999999999998
Q ss_pred CCCccc
Q psy5142 191 DKNLKF 196 (410)
Q Consensus 191 g~~~~~ 196 (410)
| ..|
T Consensus 77 g--~~F 80 (176)
T PF03467_consen 77 G--HVF 80 (176)
T ss_dssp T--EEE
T ss_pred C--cEE
Confidence 7 455
No 207
>KOG0804|consensus
Probab=88.28 E-value=1.2 Score=45.21 Aligned_cols=66 Identities=18% Similarity=0.259 Sum_probs=58.0
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCC
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDK 192 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~ 192 (410)
..++|.|-.+|.-+|.-||..|...++ -.|.+|++.|+.. .++=.+.|.|.+.++|..+.+.+||+
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~---~~I~~irivRd~~------pnrymvLIkFr~q~da~~Fy~efNGk 138 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFI---KQISDIRIVRDGM------PNRYMVLIKFRDQADADTFYEEFNGK 138 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHh---hhhheeEEeecCC------CceEEEEEEeccchhHHHHHHHcCCC
Confidence 378999999999999999999998874 7899999999544 35667999999999999999999984
No 208
>KOG2202|consensus
Probab=87.81 E-value=0.35 Score=45.55 Aligned_cols=57 Identities=26% Similarity=0.331 Sum_probs=43.2
Q ss_pred HHHHHHHH-hcCCCCCCeeEEEeeCCC-----ceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEec
Q psy5142 290 EDIREVLE-KVQTDDQEIVFIEFNVGE-----PTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVV 352 (410)
Q Consensus 290 edLk~~F~-~~G~~~~~V~~V~~~~g~-----~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l 352 (410)
|++-..|. +|| +|..+.+-... +-.||.|...++|++|+..| ++-.++|++|...+.
T Consensus 83 Ed~f~E~~~kyg----Eiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~l--nnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYG----EIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDL--NNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhh----hhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHH--cCccccCCcceeeec
Confidence 55555566 789 88776444322 23899999999999999999 678999998876654
No 209
>KOG2068|consensus
Probab=87.28 E-value=0.35 Score=47.20 Aligned_cols=70 Identities=17% Similarity=0.388 Sum_probs=52.8
Q ss_pred ccceeeEeecCCCCCCHHHHH---HHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 117 LIAQSLYVKYIPVDATLDDIK---DFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~---~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
+..+-+||-+||.....+.+. ++|.+| |.|..|.+.++..... ...+.-.+||+|...|+|..||..++|
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqy----gki~ki~~~~~~S~~s-~~~~~~s~yITy~~~eda~rci~~v~g 147 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQY----GKINKIVKNKDPSSSS-SSGGTCSVYITYEEEEDADRCIDDVDG 147 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCccccccc----ccceEEeecCCccccc-CCCCCCcccccccchHhhhhHHHHhhh
Confidence 455678999999775554443 789999 9999999988663100 002344599999999999999999986
No 210
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=87.00 E-value=2.6 Score=36.47 Aligned_cols=60 Identities=20% Similarity=0.275 Sum_probs=46.1
Q ss_pred CCCCeEEEEeCCCCCC-CHHHHHHHH---HhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhc
Q psy5142 272 LPTGALLKISDIKEPV-SREDIREVL---EKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALG 336 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~-t~edLk~~F---~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~ 336 (410)
.++-.+|.|+-|...+ ..+||+.+. +.|| .|..|. .-|..+|.|.|.+..+|=+|+.+++
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fG----pI~SVT-~cGrqsavVvF~d~~SAC~Av~Af~ 146 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFG----PIQSVT-LCGRQSAVVVFKDITSACKAVSAFQ 146 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcC----Ccceee-ecCCceEEEEehhhHHHHHHHHhhc
Confidence 3555567677666555 567777764 5689 898874 4688999999999999999999994
No 211
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=86.88 E-value=0.77 Score=41.37 Aligned_cols=58 Identities=12% Similarity=0.304 Sum_probs=40.1
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHh-cCCCCCCe---eEEEeeCCC--------ceEEEEeCChhHHHHHHHHhc
Q psy5142 275 GALLKISDIKEPVSREDIREVLEK-VQTDDQEI---VFIEFNVGE--------PTAFVRYKKENNAEAVLKALG 336 (410)
Q Consensus 275 g~~l~v~nL~~~~t~edLk~~F~~-~G~~~~~V---~~V~~~~g~--------~~afV~F~~~e~A~~Al~~l~ 336 (410)
++-|.|+.||+..|++++.+.++. ++ +- .|+....+. +.|||.|.+.+++......++
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~----~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~ 76 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLP----DEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFD 76 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--S----SE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCT
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcc----cccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcC
Confidence 456889999999999999997776 66 33 344322221 249999999999999999983
No 212
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=84.76 E-value=0.29 Score=51.67 Aligned_cols=8 Identities=38% Similarity=0.576 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q psy5142 24 NQIIEQIE 31 (410)
Q Consensus 24 ~~i~~QlE 31 (410)
..|..||+
T Consensus 133 ~~lf~~i~ 140 (556)
T PF05918_consen 133 TGLFSQIE 140 (556)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33344443
No 213
>KOG1996|consensus
Probab=83.91 E-value=2.9 Score=40.20 Aligned_cols=58 Identities=16% Similarity=0.106 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCCCCCCeeEEEeeCCCc-------eEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEec
Q psy5142 289 REDIREVLEKVQTDDQEIVFIEFNVGEP-------TAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVV 352 (410)
Q Consensus 289 ~edLk~~F~~~G~~~~~V~~V~~~~g~~-------~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l 352 (410)
++.+++.+.+|| .|..|-+....+ .-||+|...++|-+|+-.| +|.-++|+.|..-.-
T Consensus 300 ede~keEceKyg----~V~~viifeip~~p~deavRiFveF~r~e~aiKA~Vdl--nGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYG----KVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDL--NGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhc----ceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhc--CCceecceeeeheec
Confidence 456788899999 776664432211 2699999999999999999 788999998876543
No 214
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=82.67 E-value=2.7 Score=38.22 Aligned_cols=55 Identities=24% Similarity=0.496 Sum_probs=36.1
Q ss_pred CCeEehHHHHhhHHHHhccCcHHHHHHHHhhcCCceEEEe---cCccceecCCCCCCC
Q psy5142 53 DGWVELTTMLKFARLAKMTTEAKVIVDALKKSTSKLIEVN---EDGTKIRRNPEKELP 107 (410)
Q Consensus 53 ~g~v~l~~l~~F~r~k~l~~d~~~i~~Al~~~~S~~levs---ed~~~vrR~~~~p~p 107 (410)
+|||+|+.|+...+++....+.+.|.+.+...+-.-.++. .++..||=.....+|
T Consensus 30 ~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K~Rfel~~~~~~~~~IRA~qGHSi~ 87 (186)
T PF01885_consen 30 DGWVSVDDLLRALRFKGLWVTEEDIREVVETDDKQRFELRYEDPGGWRIRANQGHSIP 87 (186)
T ss_dssp T--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS--EEEE-----TTEEEESS--SS-
T ss_pred CCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCCCCeeEEcccccCceEEECCCCCCc
Confidence 5999999999999998777778889888887666678888 778899887655555
No 215
>KOG3973|consensus
Probab=82.11 E-value=0.9 Score=44.52 Aligned_cols=18 Identities=11% Similarity=0.029 Sum_probs=8.6
Q ss_pred ceeeEeecCCCCCCHHHH
Q psy5142 119 AQSLYVKYIPVDATLDDI 136 (410)
Q Consensus 119 ~rtv~V~~lp~~~t~~~L 136 (410)
.++|-..-.|.++++-.|
T Consensus 149 ~~~L~~~k~p~Nin~~~l 166 (465)
T KOG3973|consen 149 LRTLNFPKQPGNINEWKL 166 (465)
T ss_pred HHHcCCCCCCCCchHHHH
Confidence 344444444555555433
No 216
>KOG4285|consensus
Probab=80.04 E-value=6.7 Score=37.99 Aligned_cols=71 Identities=11% Similarity=0.125 Sum_probs=50.2
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEE-EEEecC
Q psy5142 275 GALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKV-SIEVVT 353 (410)
Q Consensus 275 g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v-~v~~l~ 353 (410)
..-|.|.|.|+.-. .-|-.+|.+|| .|..+........=+|||.+..+|++||..- +..|+|..+ -|.-..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG----~Vvkhv~~~ngNwMhirYssr~~A~KALskn---g~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCG----EVVKHVTPSNGNWMHIRYSSRTHAQKALSKN---GTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhC----eeeeeecCCCCceEEEEecchhHHHHhhhhc---CeeeccceEEeeeecC
Confidence 34567788776543 45778899999 8865544443445799999999999999874 677777543 555434
No 217
>KOG2278|consensus
Probab=77.53 E-value=3.7 Score=36.58 Aligned_cols=52 Identities=17% Similarity=0.303 Sum_probs=39.1
Q ss_pred CCeEehHHHHhhHHHHhccCcHHHHHHHHhhcCCceEEE--ecCccceecCCCC
Q psy5142 53 DGWVELTTMLKFARLAKMTTEAKVIVDALKKSTSKLIEV--NEDGTKIRRNPEK 104 (410)
Q Consensus 53 ~g~v~l~~l~~F~r~k~l~~d~~~i~~Al~~~~S~~lev--sed~~~vrR~~~~ 104 (410)
|||||+..|++.|+.+-..-.+++|..+++..+-.-..+ -++...||-.+..
T Consensus 32 dGfvpv~~lL~lnq~r~~~~t~ddi~riVk~ndKqRF~l~d~~~el~IrAnQGH 85 (207)
T KOG2278|consen 32 DGFVPVEDLLNLNQFRGANHTIDDIRRIVKRNDKQRFSLIDEAGELLIRANQGH 85 (207)
T ss_pred CCceEHHHHhccchhcccCCcHHHHHHHHhccccceEEeecCCCcEEEEecCCc
Confidence 699999999999999999988999999998644433332 3445567666433
No 218
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=77.44 E-value=9.1 Score=34.74 Aligned_cols=61 Identities=8% Similarity=0.023 Sum_probs=44.5
Q ss_pred CHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEec
Q psy5142 288 SREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVV 352 (410)
Q Consensus 288 t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l 352 (410)
....|+++|..++ .+....+.+.=....|.|.+.++|..|...++..+..+.|..+++-..
T Consensus 8 ~~~~l~~l~~~~~----~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~ 68 (184)
T PF04847_consen 8 NLAELEELFSTYD----PPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFG 68 (184)
T ss_dssp -HHHHHHHHHTT-----SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE--
T ss_pred hHHHHHHHHHhcC----CceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEc
Confidence 4578999999999 776666777777899999999999999999943378888888776543
No 219
>KOG2193|consensus
Probab=76.04 E-value=2.6 Score=42.46 Aligned_cols=70 Identities=19% Similarity=0.259 Sum_probs=52.2
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEe
Q psy5142 277 LLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEV 351 (410)
Q Consensus 277 ~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~ 351 (410)
-|++.||.+.++..||..+|..... ... =.|..-.+++||.+.+..-|.+|++.++ +..++.|..+.+..
T Consensus 3 klyignL~p~~~psdl~svfg~ak~---~~~-g~fl~k~gyafvd~pdq~wa~kaie~~s-gk~elqGkr~e~~~ 72 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKI---PGS-GQFLVKSGYAFVDCPDQQWANKAIETLS-GKVELQGKRQEVEH 72 (584)
T ss_pred cccccccCCCCChHHHHHHhccccC---CCC-cceeeecceeeccCCchhhhhhhHHhhc-hhhhhcCceeeccc
Confidence 3789999999999999999986430 111 1222234789999999999999999985 46777777766654
No 220
>KOG2135|consensus
Probab=75.95 E-value=0.99 Score=46.02 Aligned_cols=61 Identities=20% Similarity=0.217 Sum_probs=49.0
Q ss_pred hccceeeEeecCCCC-CCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcC
Q psy5142 116 DLIAQSLYVKYIPVD-ATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENK 190 (410)
Q Consensus 116 ~~~~rtv~V~~lp~~-~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~ 190 (410)
..+.+++-+.-.|.. -|..+|...|.+| |.|.+|.+... .-.|.|+|.+..+|-.|..-..
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~f----G~i~n~qv~~~----------~~~a~vTF~t~aeag~a~~s~~ 430 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQF----GEIENIQVDYS----------SLHAVVTFKTRAEAGEAYASHG 430 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhc----CccccccccCc----------hhhheeeeeccccccchhcccc
Confidence 467788888888876 5789999999999 99999988643 2349999999999977765543
No 221
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=75.72 E-value=4.7 Score=35.04 Aligned_cols=61 Identities=13% Similarity=0.183 Sum_probs=41.8
Q ss_pred ccceeeEeecCCC------CCC---HHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHH
Q psy5142 117 LIAQSLYVKYIPV------DAT---LDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLN 187 (410)
Q Consensus 117 ~~~rtv~V~~lp~------~~t---~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~ 187 (410)
...-||.|.-... .+. .++|.+.|.+| |+|.-||+. -+.-+|+|.+-.+|-+|+.
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~----GevvLvRfv------------~~~mwVTF~dg~sALaals 88 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQY----GEVVLVRFV------------GDTMWVTFRDGQSALAALS 88 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCC----S-ECEEEEE------------TTCEEEEESSCHHHHHHHH
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhC----CceEEEEEe------------CCeEEEEECccHHHHHHHc
Confidence 4456777765541 122 34778889999 998877654 2458899999999999999
Q ss_pred hcCCCCccc
Q psy5142 188 ENKDKNLKF 196 (410)
Q Consensus 188 ~~~g~~~~~ 196 (410)
... .++
T Consensus 89 ~dg---~~v 94 (146)
T PF08952_consen 89 LDG---IQV 94 (146)
T ss_dssp GCC---SEE
T ss_pred cCC---cEE
Confidence 866 566
No 222
>KOG4483|consensus
Probab=73.23 E-value=7.1 Score=39.20 Aligned_cols=56 Identities=21% Similarity=0.329 Sum_probs=48.6
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHH
Q psy5142 275 GALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKA 334 (410)
Q Consensus 275 g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~ 334 (410)
..+|-|.++|....-+||-.+|..|+..++.|.||+- .-|+-.|.+...|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd----thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD----THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec----ceeEEeecchHHHHHHhhc
Confidence 3689999999999999999999999977789999965 5599999999888888765
No 223
>KOG2068|consensus
Probab=73.08 E-value=1.4 Score=43.10 Aligned_cols=71 Identities=14% Similarity=0.246 Sum_probs=52.8
Q ss_pred eEEEEeCCCCCCCHHH-HH--HHHHhcCCCCCCeeEEEeeCCCc---------eEEEEeCChhHHHHHHHHhcCCCeEEc
Q psy5142 276 ALLKISDIKEPVSRED-IR--EVLEKVQTDDQEIVFIEFNVGEP---------TAFVRYKKENNAEAVLKALGSKEIVIK 343 (410)
Q Consensus 276 ~~l~v~nL~~~~t~ed-Lk--~~F~~~G~~~~~V~~V~~~~g~~---------~afV~F~~~e~A~~Al~~l~~~~~~i~ 343 (410)
..+++.+|+..+.++. |+ +.|.+|| .|..|.+..+.. .+||.|...++|..||... +++.++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqyg----ki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v--~g~~~d 151 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYG----KINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDV--DGFVDD 151 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccc----cceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHh--hhHHhh
Confidence 4577888888775444 43 3789999 888887766441 3899999999999999998 677777
Q ss_pred CeEEEEEec
Q psy5142 344 DVKVSIEVV 352 (410)
Q Consensus 344 g~~v~v~~l 352 (410)
|+.++...-
T Consensus 152 g~~lka~~g 160 (327)
T KOG2068|consen 152 GRALKASLG 160 (327)
T ss_pred hhhhHHhhC
Confidence 777555443
No 224
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=72.53 E-value=11 Score=34.06 Aligned_cols=82 Identities=16% Similarity=0.398 Sum_probs=49.4
Q ss_pred CCeEehHHHHhhHHHHhccCcHHHHHHHHhhcCCceEEEecCccceecCCCCCCCCCchhhhhhccceeeEeecCCCCCC
Q psy5142 53 DGWVELTTMLKFARLAKMTTEAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDAT 132 (410)
Q Consensus 53 ~g~v~l~~l~~F~r~k~l~~d~~~i~~Al~~~~S~~levsed~~~vrR~~~~p~p~~~~~~~~~~~~rtv~V~~lp~~~t 132 (410)
+|||+|+.|+...+.+-...+.+.|.+.+...+-.-.+++ +.+||=....-++ .+..........+|| ..|.
T Consensus 31 ~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~K~Rf~l~--~~~IRA~qGHSi~-v~~~~~~~~~P~~ly-----HGT~ 102 (179)
T PRK00819 31 EGWVDIDALIEALAKAYKWVTRELLEAVVESDDKGRFEIS--GDRIRARQGHSVD-VDLDLEEDTPPAVLY-----HGTS 102 (179)
T ss_pred CCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCCCcceEec--CceEEeccCcCCc-cccCCccCCCCceeE-----eCCC
Confidence 5999999999887654334467888888886555567776 6688887655443 111111111111222 2366
Q ss_pred HHHHHHHHhh
Q psy5142 133 LDDIKDFFKK 142 (410)
Q Consensus 133 ~~~L~~~F~~ 142 (410)
.+.+..++.+
T Consensus 103 ~~~~~~I~~~ 112 (179)
T PRK00819 103 SEELDSILEE 112 (179)
T ss_pred HHHHHHHHHh
Confidence 7777777753
No 225
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=72.12 E-value=14 Score=29.03 Aligned_cols=53 Identities=21% Similarity=0.384 Sum_probs=38.1
Q ss_pred CCCCCCHHHHHHHHHh-cCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHh
Q psy5142 283 IKEPVSREDIREVLEK-VQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKAL 335 (410)
Q Consensus 283 L~~~~t~edLk~~F~~-~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l 335 (410)
++...+..+|+..+++ ||..-..|..+..+.+...|||++.....|......+
T Consensus 28 V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 28 VDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred ECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 5678899999999998 5632122333334455567999999999998887666
No 226
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=71.50 E-value=16 Score=28.15 Aligned_cols=54 Identities=22% Similarity=0.348 Sum_probs=38.0
Q ss_pred CCCCCCCHHHHHHHHHh-cCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHh
Q psy5142 282 DIKEPVSREDIREVLEK-VQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKAL 335 (410)
Q Consensus 282 nL~~~~t~edLk~~F~~-~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l 335 (410)
-++...++.+|+..+++ |++.-..|.....+.+-..|||++.....|...-..+
T Consensus 20 ~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 20 IVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 36788999999999998 5632222333334445567999999988888877665
No 227
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=69.10 E-value=18 Score=39.22 Aligned_cols=73 Identities=12% Similarity=0.134 Sum_probs=50.3
Q ss_pred eEEEEeCC--CCCCCHHHHHHHHHhcC-CCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEec
Q psy5142 276 ALLKISDI--KEPVSREDIREVLEKVQ-TDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVV 352 (410)
Q Consensus 276 ~~l~v~nL--~~~~t~edLk~~F~~~G-~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l 352 (410)
...++-++ ...++.-+|-.++..-+ .....|-.|++.. .+.||..... .|...+..| ++..++|+.|.++.+
T Consensus 486 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~--~~s~v~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~ 560 (629)
T PRK11634 486 MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFA--SHSTIELPKG-MPGEVLQHF--TRTRILNKPMNMQLL 560 (629)
T ss_pred CEEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeC--CceEEEcChh-hHHHHHHHh--ccccccCCceEEEEC
Confidence 33444444 45677788888777655 2223455566654 6688888654 578899999 678899999999987
Q ss_pred C
Q psy5142 353 T 353 (410)
Q Consensus 353 ~ 353 (410)
.
T Consensus 561 ~ 561 (629)
T PRK11634 561 G 561 (629)
T ss_pred C
Confidence 4
No 228
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=68.68 E-value=25 Score=26.27 Aligned_cols=52 Identities=15% Similarity=0.263 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeE
Q psy5142 286 PVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVK 346 (410)
Q Consensus 286 ~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~ 346 (410)
.++-++||..+..|+ |.++..+.+.=||.|.+-.+|+++.... ++..+-+..
T Consensus 11 ~~~v~d~K~~Lr~y~-------~~~I~~d~tGfYIvF~~~~Ea~rC~~~~--~~~~~f~y~ 62 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-------WDRIRDDRTGFYIVFNDSKEAERCFRAE--DGTLFFTYR 62 (66)
T ss_pred CccHHHHHHHHhcCC-------cceEEecCCEEEEEECChHHHHHHHHhc--CCCEEEEEE
Confidence 467899999999998 3344444455689999999999999988 444444433
No 229
>KOG1996|consensus
Probab=68.32 E-value=12 Score=36.21 Aligned_cols=52 Identities=25% Similarity=0.262 Sum_probs=39.4
Q ss_pred HHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 133 LDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 133 ~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
++++.+-..+| |.|.+|.|.-.+.-.. .-.--.||+|...++|.+|+-.++|
T Consensus 300 ede~keEceKy----g~V~~viifeip~~p~---deavRiFveF~r~e~aiKA~VdlnG 351 (378)
T KOG1996|consen 300 EDETKEECEKY----GKVGNVIIFEIPSQPE---DEAVRIFVEFERVESAIKAVVDLNG 351 (378)
T ss_pred HHHHHHHHHhh----cceeeEEEEecCCCcc---chhheeeeeeccHHHHHHHHHhcCC
Confidence 46777888999 9999998765533210 1122389999999999999999996
No 230
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=68.19 E-value=22 Score=26.90 Aligned_cols=64 Identities=30% Similarity=0.299 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHHhcC-CCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEec
Q psy5142 284 KEPVSREDIREVLEKVQ-TDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVV 352 (410)
Q Consensus 284 ~~~~t~edLk~~F~~~G-~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l 352 (410)
-..++.-+|-.++...+ .....|-.|++.. .++||.-... .|..++..| ++..++|+.|.++.+
T Consensus 10 ~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--~~S~vev~~~-~a~~v~~~l--~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 10 KDGLTPRDIVGAICNEAGIPGRDIGRIDIFD--NFSFVEVPEE-VAEKVLEAL--NGKKIKGKKVRVERA 74 (74)
T ss_dssp GGT--HHHHHHHHHTCTTB-GGGEEEEEE-S--S-EEEEE-TT--HHHHHHHH--TT--SSS----EEE-
T ss_pred ccCCCHHHHHHHHHhccCCCHHhEEEEEEee--eEEEEEECHH-HHHHHHHHh--cCCCCCCeeEEEEEC
Confidence 35677888888888764 3335677777765 7789888664 689999999 678999999999864
No 231
>KOG2135|consensus
Probab=67.71 E-value=3.4 Score=42.27 Aligned_cols=71 Identities=14% Similarity=0.147 Sum_probs=50.5
Q ss_pred CeEEEEeCCCCCC-CHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEec
Q psy5142 275 GALLKISDIKEPV-SREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVV 352 (410)
Q Consensus 275 g~~l~v~nL~~~~-t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l 352 (410)
.|.|.+.-+|+.. +..+|..+|.+|| +|.-|.+.-....|.|.|.+...|-.|-.. .+..|+|+.|+|..-
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG----~i~n~qv~~~~~~a~vTF~t~aeag~a~~s---~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFG----EIENIQVDYSSLHAVVTFKTRAEAGEAYAS---HGAVLNNRFIKLFWH 443 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcC----ccccccccCchhhheeeeeccccccchhcc---ccceecCceeEEEEe
Confidence 3555555556655 7899999999999 886654443345699999998888666444 367788887777643
No 232
>COG4907 Predicted membrane protein [Function unknown]
Probab=67.26 E-value=3.8 Score=41.85 Aligned_cols=17 Identities=24% Similarity=0.542 Sum_probs=7.5
Q ss_pred EEEeCCh-hHHHHHHHHh
Q psy5142 319 FVRYKKE-NNAEAVLKAL 335 (410)
Q Consensus 319 fV~F~~~-e~A~~Al~~l 335 (410)
|..|.++ --+++.+++|
T Consensus 515 ylVYatALGV~dkVvkam 532 (595)
T COG4907 515 YLVYATALGVSDKVVKAM 532 (595)
T ss_pred hhhhhhhhccHHHHHHHH
Confidence 4445543 2334444444
No 233
>KOG4574|consensus
Probab=67.21 E-value=2.9 Score=45.62 Aligned_cols=59 Identities=14% Similarity=0.127 Sum_probs=48.2
Q ss_pred eecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 124 VKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 124 V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
+.|.+...|-..|..+|+.| |.|.++++.|+. ..|.|+|.+.+.|..|++.+.|+....
T Consensus 303 ~~nn~v~~tSssL~~l~s~y----g~v~s~wtlr~~----------N~alvs~~s~~sai~a~dAl~gkevs~ 361 (1007)
T KOG4574|consen 303 LENNAVNLTSSSLATLCSDY----GSVASAWTLRDL----------NMALVSFSSVESAILALDALQGKEVSV 361 (1007)
T ss_pred hhcccccchHHHHHHHHHhh----cchhhheecccc----------cchhhhhHHHHHHHHhhhhhcCCcccc
Confidence 34445556788899999999 999999987654 359999999999999999999865544
No 234
>KOG2318|consensus
Probab=66.75 E-value=19 Score=37.89 Aligned_cols=79 Identities=16% Similarity=0.097 Sum_probs=60.6
Q ss_pred hccceeeEeecCCCC-CCHHHHHHHHhhccCCCCceEEEEEcccCccc---------cc---------------------
Q psy5142 116 DLIAQSLYVKYIPVD-ATLDDIKDFFKKNTSEDVKITNIIMRNYQDKL---------AN--------------------- 164 (410)
Q Consensus 116 ~~~~rtv~V~~lp~~-~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~---------~~--------------------- 164 (410)
+...+.|-|-|+.|+ +...+|.-+|++|+-..|.|.+|.|.....+. ++
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 355688999999998 88999999999998888999999985432210 00
Q ss_pred ---------c----cccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 165 ---------Q----KKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 165 ---------~----~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
+ +.--=||.|+|.+.+.|.+.++.++| +.|
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG--~Ef 293 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDG--IEF 293 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCc--cee
Confidence 0 00123799999999999999999998 555
No 235
>KOG0112|consensus
Probab=66.00 E-value=6.2 Score=43.47 Aligned_cols=61 Identities=10% Similarity=0.063 Sum_probs=54.2
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
...+.+++++|+..+....|...|..| |.|..|.+. ....||||.|++...|+.|+..+-|
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~f----Gpir~Idy~----------hgq~yayi~yes~~~aq~a~~~~rg 513 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRF----GPIRIIDYR----------HGQPYAYIQYESPPAAQAATHDMRG 513 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhcc----Ccceeeecc----------cCCcceeeecccCccchhhHHHHhc
Confidence 456789999999999999999999999 999998775 3467899999999999999998875
No 236
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=65.63 E-value=16 Score=26.68 Aligned_cols=50 Identities=12% Similarity=0.169 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEE
Q psy5142 289 REDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVI 342 (410)
Q Consensus 289 ~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i 342 (410)
=.+|-++|.+.| +.|.++........+++++.. ++.+.|.+.|.+.|+.+
T Consensus 15 La~v~~~l~~~~---inI~~i~~~~~~~~~~~rl~~-~~~~~~~~~L~~~G~~v 64 (66)
T cd04908 15 LAAVTEILSEAG---INIRALSIADTSEFGILRLIV-SDPDKAKEALKEAGFAV 64 (66)
T ss_pred HHHHHHHHHHCC---CCEEEEEEEecCCCCEEEEEE-CCHHHHHHHHHHCCCEE
Confidence 356777888877 567776654443458888766 44556666665455543
No 237
>KOG4285|consensus
Probab=64.49 E-value=16 Score=35.42 Aligned_cols=57 Identities=12% Similarity=0.197 Sum_probs=45.3
Q ss_pred ceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcC
Q psy5142 119 AQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENK 190 (410)
Q Consensus 119 ~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~ 190 (410)
+.=|-|-+||...+ .-|...|+.| |+|+...+.+ .-.+-+|.|.+.-+|++||....
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~c----G~Vvkhv~~~----------ngNwMhirYssr~~A~KALskng 253 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRC----GEVVKHVTPS----------NGNWMHIRYSSRTHAQKALSKNG 253 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhh----CeeeeeecCC----------CCceEEEEecchhHHHHhhhhcC
Confidence 45577778887543 5788899999 9999887652 23478999999999999998865
No 238
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=60.80 E-value=34 Score=24.38 Aligned_cols=46 Identities=13% Similarity=0.276 Sum_probs=38.7
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChh
Q psy5142 277 LLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKEN 326 (410)
Q Consensus 277 ~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e 326 (410)
++.|.|+.-.-....|+..+.... .|..+.+.......-|.|....
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~----GV~~v~vd~~~~~v~v~~~~~~ 46 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLP----GVKSVKVDLETKTVTVTYDPDK 46 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTST----TEEEEEEETTTTEEEEEESTTT
T ss_pred CEEECCcccHHHHHHHHHHHhcCC----CCcEEEEECCCCEEEEEEecCC
Confidence 466778777777889999999988 8999999988899999998653
No 239
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=59.96 E-value=16 Score=31.37 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=29.2
Q ss_pred eEEEEeCCCCCC-CHHHHHHHHHhcCCCCCCeeEEEeeCC
Q psy5142 276 ALLKISDIKEPV-SREDIREVLEKVQTDDQEIVFIEFNVG 314 (410)
Q Consensus 276 ~~l~v~nL~~~~-t~edLk~~F~~~G~~~~~V~~V~~~~g 314 (410)
.=|.|.|||... +++-|+.+-+.+| .+..||..+.
T Consensus 105 vWVri~glP~~~~~~~~~~~i~~~iG----~~i~vD~~t~ 140 (153)
T PF14111_consen 105 VWVRIYGLPLHLWSEEILKAIGSKIG----EPIEVDENTL 140 (153)
T ss_pred hhhhhccCCHHHhhhHHHHHHHHhcC----CeEEEEcCCC
Confidence 357788999875 8899999999999 8888887654
No 240
>KOG4574|consensus
Probab=56.02 E-value=10 Score=41.68 Aligned_cols=69 Identities=12% Similarity=0.117 Sum_probs=58.2
Q ss_pred EeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEec
Q psy5142 280 ISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVV 352 (410)
Q Consensus 280 v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l 352 (410)
+.|.+-..+-..|..+|++|| .|......++..-|.|.|.+.+.|-.|++++++..+-..|-+.+|...
T Consensus 303 ~~nn~v~~tSssL~~l~s~yg----~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 303 LENNAVNLTSSSLATLCSDYG----SVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred hhcccccchHHHHHHHHHhhc----chhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 445555677888999999999 999988888888999999999999999999977777777877777654
No 241
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=53.22 E-value=28 Score=33.76 Aligned_cols=76 Identities=26% Similarity=0.305 Sum_probs=57.4
Q ss_pred CCCCchhhhhhccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccc---cccccccEEEEEecCHHHH
Q psy5142 106 LPTFDIDFVKDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLA---NQKKFKGSIFVTFDNKENA 182 (410)
Q Consensus 106 ~p~~~~~~~~~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~---~~~~~kG~afVeF~~~e~A 182 (410)
+|.-++++ -.|+|...|+..+++.-.+..-|-+| |+|++|.|..+.++.. ..-...-+..+.|-+.+.+
T Consensus 6 LPkGdD~Y----rTRSLLfeNv~~sidLh~Fl~~fv~~----~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~C 77 (309)
T PF10567_consen 6 LPKGDDEY----RTRSLLFENVNNSIDLHSFLTKFVKF----GPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREIC 77 (309)
T ss_pred cCCCCccc----eeHHHHHhhccccccHHHHHHHhhcc----CceeEEEEecCCCcccccccccccceEEEEeeechHHH
Confidence 56555554 36899999999999999999999999 9999999987662210 0013457899999999988
Q ss_pred HHHHHhc
Q psy5142 183 EKFLNEN 189 (410)
Q Consensus 183 ~~Al~~~ 189 (410)
-.+....
T Consensus 78 LdFYNnv 84 (309)
T PF10567_consen 78 LDFYNNV 84 (309)
T ss_pred HHHHHHH
Confidence 7766543
No 242
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=53.05 E-value=52 Score=24.64 Aligned_cols=60 Identities=18% Similarity=0.336 Sum_probs=45.7
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCC-hhHHHHHHHHhcCCC
Q psy5142 276 ALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKK-ENNAEAVLKALGSKE 339 (410)
Q Consensus 276 ~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~-~e~A~~Al~~l~~~~ 339 (410)
..+++.|+.=.--...++..+.... .|..|++....+.+.|.|.+ ..+.+..+.++.+.|
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~----gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aG 64 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVD----GVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAG 64 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCC----CeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcC
Confidence 4677777776667788999999988 89999998888889999998 455555555554334
No 243
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=52.10 E-value=48 Score=24.77 Aligned_cols=46 Identities=20% Similarity=0.421 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 129 VDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 129 ~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
..++.++++.-+..| + -..|+ -++. | -||.|.+..+|+++....+|
T Consensus 10 ~~~~v~d~K~~Lr~y----~-~~~I~--~d~t---------G-fYIvF~~~~Ea~rC~~~~~~ 55 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKY----R-WDRIR--DDRT---------G-FYIVFNDSKEAERCFRAEDG 55 (66)
T ss_pred CCccHHHHHHHHhcC----C-cceEE--ecCC---------E-EEEEECChHHHHHHHHhcCC
Confidence 357899999999999 4 33333 3322 2 79999999999999999886
No 244
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=50.60 E-value=11 Score=30.02 Aligned_cols=64 Identities=11% Similarity=0.239 Sum_probs=37.1
Q ss_pred HHHHHhhcCCceEEEecCccceecCCCCCCCC-CchhhhhhccceeeEeecCCCCCCHHHHHHHHh
Q psy5142 77 IVDALKKSTSKLIEVNEDGTKIRRNPEKELPT-FDIDFVKDLIAQSLYVKYIPVDATLDDIKDFFK 141 (410)
Q Consensus 77 i~~Al~~~~S~~levsed~~~vrR~~~~p~p~-~~~~~~~~~~~rtv~V~~lp~~~t~~~L~~~F~ 141 (410)
+++.|-+..-..|.++.....|+=.| .+++. ..-+....+..|||.|.|||...++++|++..+
T Consensus 10 VA~~i~~~~~~~v~l~~~~~~V~v~P-~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 10 VAQRILKKKKHPVPLEDCCVRVKVSP-VTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred HHHHHHhCCEEEEEECCEEEEEEEEe-EecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 44444432333455554444444432 11211 112234568899999999999999999986543
No 245
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=48.30 E-value=1.5e+02 Score=24.40 Aligned_cols=60 Identities=7% Similarity=0.084 Sum_probs=40.6
Q ss_pred CeEEEEeC-CCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCc----eEEEEeCChhHHHHHHHHhcC
Q psy5142 275 GALLKISD-IKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEP----TAFVRYKKENNAEAVLKALGS 337 (410)
Q Consensus 275 g~~l~v~n-L~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~----~afV~F~~~e~A~~Al~~l~~ 337 (410)
++.+.+-. .|..++-++|..+...+- ..|..+.+.++.. -+.++|.+.++|..-...+|+
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~---~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNG 76 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFR---EDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNG 76 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhccc---ccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCC
Confidence 34444444 555556677765555443 2677788776543 388999999999999999953
No 246
>PRK03717 ribonuclease P protein component 2; Provisional
Probab=47.64 E-value=76 Score=26.64 Aligned_cols=59 Identities=22% Similarity=0.279 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCCh--hHHHHHHHHhcCCCeEEcCeEEEEEec
Q psy5142 290 EDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKE--NNAEAVLKALGSKEIVIKDVKVSIEVV 352 (410)
Q Consensus 290 edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~--e~A~~Al~~l~~~~~~i~g~~v~v~~l 352 (410)
+.+.++|+.+|.-.+....+.+......|.|+..-. +.+..|+..+ ..++|..+.+.++
T Consensus 40 ~av~~~fGd~G~~~~~~~li~f~~~t~~gIlRc~R~~~~~v~aAL~li----~~i~~~~v~ir~l 100 (120)
T PRK03717 40 EASLSTLGELGTARAKPWFIKFDEKTQTGIVRCDRKHVEELRFALTLV----TEINGSKAIIRTL 100 (120)
T ss_pred HHHHHHcChhhhccccceEEEEeCCCCEEEEEcCchhHHHHHHHHHHH----HhCCCeeEEEEEe
Confidence 344445666662122334456666566899999753 4567777777 3567777777765
No 247
>KOG2253|consensus
Probab=45.74 E-value=13 Score=39.61 Aligned_cols=71 Identities=21% Similarity=0.206 Sum_probs=56.1
Q ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEE
Q psy5142 271 ELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIE 350 (410)
Q Consensus 271 ~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~ 350 (410)
..++..++||.|+...++.+-++.+...+| -|..... ..+||..|.....+..|+..+ ....++|..+.+.
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g----~v~s~kr---~~fgf~~f~~~~~~~ra~r~~--t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSG----FVPSWKR---DKFGFCEFLKHIGDLRASRLL--TELNIDDQKLIEN 106 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCC----cchhhhh---hhhcccchhhHHHHHHHHHHh--cccCCCcchhhcc
Confidence 456677999999999999999999999999 5543322 238999999999999999998 5667776655443
No 248
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=43.73 E-value=26 Score=29.30 Aligned_cols=57 Identities=11% Similarity=0.103 Sum_probs=29.7
Q ss_pred eeEeecCCCC---------CCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHH-HHHHHHh
Q psy5142 121 SLYVKYIPVD---------ATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKEN-AEKFLNE 188 (410)
Q Consensus 121 tv~V~~lp~~---------~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~-A~~Al~~ 188 (410)
+++|-|+|.+ .+..+|++.|+.| ..+. |+...... .+.|++.|+|...-. -..|+..
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f----~p~k-v~~l~~~~------gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEF----NPLK-VKPLYGKQ------GHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH-------SE-EEEEEETT------EEEEEEEEE--SSHHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhc----CCce-eEECcCCC------CCcEEEEEEECCChHHHHHHHHH
Confidence 5667777543 3568999999999 6654 44444333 478999999987443 3334433
No 249
>COG1369 POP5 RNase P/RNase MRP subunit POP5 [Translation, ribosomal structure and biogenesis]
Probab=43.55 E-value=84 Score=26.59 Aligned_cols=64 Identities=20% Similarity=0.304 Sum_probs=41.3
Q ss_pred CCCCHHHHHHH--------HHhcCCCCCCeeEEEeeCCCceEEEEeCC--hhHHHHHHHHhcCCCeEEcCeEEEEEec
Q psy5142 285 EPVSREDIREV--------LEKVQTDDQEIVFIEFNVGEPTAFVRYKK--ENNAEAVLKALGSKEIVIKDVKVSIEVV 352 (410)
Q Consensus 285 ~~~t~edLk~~--------F~~~G~~~~~V~~V~~~~g~~~afV~F~~--~e~A~~Al~~l~~~~~~i~g~~v~v~~l 352 (410)
..++..+|.++ |+.+|+-.+.+.-|.+....++|.|+..- .+.+.+|+..+ ..++|+.|.+.++
T Consensus 27 ~~i~~~~l~~~I~~s~l~llG~~gta~~~~~lv~~~~~t~~GIvrc~R~~~~~v~aAL~l~----~~~~g~rv~I~~l 100 (124)
T COG1369 27 EEITRGELVRLIRRSLLSLLGDVGTAKANPRLVKYYFSTGTGIVRCRREYVDLVRAALMLA----REVNGKRVIIVVL 100 (124)
T ss_pred ccCChhHHHHHHHHHHHHHcCcccccccceeEEEEeccCCceEEEEechhHHHHHHHHHHH----HHhCCceEEEEEe
Confidence 45566666553 33334334555666666667889999874 46777888777 3677777777665
No 250
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=42.34 E-value=72 Score=27.76 Aligned_cols=56 Identities=20% Similarity=0.332 Sum_probs=38.0
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHh-cCCCCCCeeEE---EeeCCCceEEEEeCChhHHHHHHHHh
Q psy5142 275 GALLKISDIKEPVSREDIREVLEK-VQTDDQEIVFI---EFNVGEPTAFVRYKKENNAEAVLKAL 335 (410)
Q Consensus 275 g~~l~v~nL~~~~t~edLk~~F~~-~G~~~~~V~~V---~~~~g~~~afV~F~~~e~A~~Al~~l 335 (410)
+..+|+ ++...+..+|+..+++ |+ +.|..| ..+.|...|||++....+|......+
T Consensus 83 N~yvF~--Vd~kAnK~qIK~AVEklf~---VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~ki 142 (145)
T PTZ00191 83 NTLVFI--VDQRANKTQIKKAVEKLYD---VKVVKVNTLITPDGLKKAYIRLSPDVDALDVANKI 142 (145)
T ss_pred CEEEEE--EcCCCCHHHHHHHHHHHhC---CeeEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 455665 4567899999999998 55 244444 33345567999998877766555544
No 251
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=41.25 E-value=1.2e+02 Score=31.32 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=10.8
Q ss_pred EEEEeCChhHHHHHHHHh
Q psy5142 318 AFVRYKKENNAEAVLKAL 335 (410)
Q Consensus 318 afV~F~~~e~A~~Al~~l 335 (410)
..|.|.-+.+...-+..+
T Consensus 316 ~VI~~~~P~~~~~yvqR~ 333 (456)
T PRK10590 316 HVVNYELPNVPEDYVHRI 333 (456)
T ss_pred EEEEeCCCCCHHHhhhhc
Confidence 456666666666555555
No 252
>KOG2479|consensus
Probab=40.61 E-value=17 Score=37.00 Aligned_cols=18 Identities=39% Similarity=0.473 Sum_probs=14.4
Q ss_pred CCCCCCCCCCcccccccc
Q psy5142 391 RGTKRSRGGNFESNKKAK 408 (410)
Q Consensus 391 ~G~~~~rgg~~~~~~~~~ 408 (410)
|+++++||++|+.++.+|
T Consensus 141 r~~~~~~g~rfg~~~~~k 158 (549)
T KOG2479|consen 141 RLYGRNRGRRFGRGKPQK 158 (549)
T ss_pred hhccccccccccCCCccc
Confidence 567788999999887665
No 253
>PTZ00315 2'-phosphotransferase; Provisional
Probab=39.50 E-value=47 Score=35.54 Aligned_cols=55 Identities=18% Similarity=0.350 Sum_probs=42.7
Q ss_pred CCeEehHHHHhhHHHHhccCcHHHHHHHHhhcCCceEEEe---cCc-cceecCCCCCCC
Q psy5142 53 DGWVELTTMLKFARLAKMTTEAKVIVDALKKSTSKLIEVN---EDG-TKIRRNPEKELP 107 (410)
Q Consensus 53 ~g~v~l~~l~~F~r~k~l~~d~~~i~~Al~~~~S~~levs---ed~-~~vrR~~~~p~p 107 (410)
+|||+|+.|+.-.+++....+.+.|.+.+..++-.-.+++ +++ .+||=....-++
T Consensus 403 ~Gwv~vd~LL~~~~~~~~~~t~e~i~~VV~~ndK~RF~l~~~~~~~~~~IRA~QGHSi~ 461 (582)
T PTZ00315 403 NGYVLLDDILRQPPMRNDPVSVQDVARVVRDSDKQRFKLAYGAADGRLYIRANQGHSID 461 (582)
T ss_pred CCCEEHHHHHHHHHhcCCCCCHHHHHHHHHcCCCCceEEeccCCCCceEEEeccCcccc
Confidence 5999999999988877665678899899987666678887 345 478887655554
No 254
>KOG3172|consensus
Probab=38.85 E-value=29 Score=28.25 Aligned_cols=16 Identities=19% Similarity=0.449 Sum_probs=12.1
Q ss_pred CCeEEcCeEEEEEecC
Q psy5142 338 KEIVIKDVKVSIEVVT 353 (410)
Q Consensus 338 ~~~~i~g~~v~v~~l~ 353 (410)
..+.|.|..|.+-+|-
T Consensus 59 e~V~IRGS~IRFlvlP 74 (119)
T KOG3172|consen 59 EQVFIRGSKIRFLVLP 74 (119)
T ss_pred eeEEEecCeEEEEECc
Confidence 3577888888887775
No 255
>KOG0921|consensus
Probab=38.41 E-value=22 Score=39.70 Aligned_cols=14 Identities=29% Similarity=0.522 Sum_probs=6.1
Q ss_pred CeEehHHHHhhHHH
Q psy5142 54 GWVELTTMLKFARL 67 (410)
Q Consensus 54 g~v~l~~l~~F~r~ 67 (410)
||--|-+|+.|+-.
T Consensus 652 gwa~i~~L~~~ll~ 665 (1282)
T KOG0921|consen 652 GWAEIMTLCNRLLE 665 (1282)
T ss_pred chHHhhhhhhhhhh
Confidence 44444444444433
No 256
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=36.95 E-value=1.8e+02 Score=24.72 Aligned_cols=58 Identities=14% Similarity=0.151 Sum_probs=40.6
Q ss_pred CCCeEEEEeCCCCC---CCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHh
Q psy5142 273 PTGALLKISDIKEP---VSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKAL 335 (410)
Q Consensus 273 ~~g~~l~v~nL~~~---~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l 335 (410)
.....|.|.+.+.. .+-..+.+.+.+-| +.++.+.. ..+..-|+|.++++..+|.+.+
T Consensus 33 gedpavQIs~~~~g~~~~~~~~v~~~L~~~g---I~~ksi~~--~~~~~~irf~~~~~Ql~Ak~vL 93 (127)
T PRK10629 33 QQESTLAIRAVHQGASLPDGFYVYQHLDANG---IHIKSITP--ENDSLLIRFDSPEQSAAAKEVL 93 (127)
T ss_pred CCCceEEEecCCCCCccchHHHHHHHHHHCC---CCcceEEe--eCCEEEEEECCHHHHHHHHHHH
Confidence 33445667665333 46778888888887 34555444 4468999999999888888888
No 257
>COG4907 Predicted membrane protein [Function unknown]
Probab=35.79 E-value=28 Score=35.85 Aligned_cols=6 Identities=33% Similarity=0.495 Sum_probs=2.2
Q ss_pred HHHHhc
Q psy5142 65 ARLAKM 70 (410)
Q Consensus 65 ~r~k~l 70 (410)
+=|+.+
T Consensus 29 d~m~~~ 34 (595)
T COG4907 29 DVMAKL 34 (595)
T ss_pred HHHHHh
Confidence 333333
No 258
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=35.32 E-value=67 Score=29.11 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=33.3
Q ss_pred CHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcC
Q psy5142 132 TLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENK 190 (410)
Q Consensus 132 t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~ 190 (410)
..+.|+++|..| +.+......+ +-+=+.|.|.+.++|..|...++
T Consensus 8 ~~~~l~~l~~~~----~~~~~~~~L~----------sFrRi~v~f~~~~~A~~~r~~l~ 52 (184)
T PF04847_consen 8 NLAELEELFSTY----DPPVQFSPLK----------SFRRIRVVFESPESAQRARQLLH 52 (184)
T ss_dssp -HHHHHHHHHTT-----SS-EEEEET----------TTTEEEEE-SSTTHHHHHHHTST
T ss_pred hHHHHHHHHHhc----CCceEEEEcC----------CCCEEEEEeCCHHHHHHHHHHhc
Confidence 357899999999 8887776553 23348899999999999999877
No 259
>KOG3293|consensus
Probab=34.51 E-value=30 Score=28.88 Aligned_cols=14 Identities=14% Similarity=0.399 Sum_probs=7.7
Q ss_pred eeCCCceEEEEeCC
Q psy5142 311 FNVGEPTAFVRYKK 324 (410)
Q Consensus 311 ~~~g~~~afV~F~~ 324 (410)
|.+|...-||+..+
T Consensus 60 YirGttIkylri~d 73 (134)
T KOG3293|consen 60 YIRGTTIKYLRIPD 73 (134)
T ss_pred EEecceeEEEeccH
Confidence 34555556666655
No 260
>PF12300 DUF3628: Protein of unknown function (DUF3628); InterPro: IPR022077 Proteins in this entry are DEAD Box RhlB RNA Helicases found in Xanthomonadaceae bacteria.; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=32.24 E-value=62 Score=28.42 Aligned_cols=6 Identities=0% Similarity=-0.247 Sum_probs=2.3
Q ss_pred hHHHHH
Q psy5142 364 MKIDIF 369 (410)
Q Consensus 364 ~~~~~~ 369 (410)
..+.+.
T Consensus 45 AReqra 50 (180)
T PF12300_consen 45 AREQRA 50 (180)
T ss_pred HHHHHH
Confidence 334433
No 261
>PF12993 DUF3877: Domain of unknown function, E. rectale Gene description (DUF3877); InterPro: IPR024539 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=31.23 E-value=1.9e+02 Score=25.92 Aligned_cols=104 Identities=17% Similarity=0.396 Sum_probs=0.0
Q ss_pred eEehHHHHhhHHHHhccCcHHHHHHHHhh------cCCceEEEecCccceecCCCCCCCCCchhhhhhccceeeEeecC-
Q psy5142 55 WVELTTMLKFARLAKMTTEAKVIVDALKK------STSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYI- 127 (410)
Q Consensus 55 ~v~l~~l~~F~r~k~l~~d~~~i~~Al~~------~~S~~levsed~~~vrR~~~~p~p~~~~~~~~~~~~rtv~V~~l- 127 (410)
|-||+.| |.+=.+..+.+.+..||.. ..-.-|.|+-.+.+.-=. +|+.-.++..+.-.-.-|++.|
T Consensus 29 YYPlsSL---n~~l~~e~~~~em~~~L~~f~~~~~~~lG~v~vs~k~eRFCf~----IP~~g~~YVhe~~~~~eFik~lI 101 (175)
T PF12993_consen 29 YYPLSSL---NHFLGTEDDEEEMQEALEEFPEYVKDRLGEVEVSHKGERFCFH----IPEEGSEYVHEHTKENEFIKELI 101 (175)
T ss_pred EccHHHH---HHHhcccccHHHHHHHHHHhHHHHHhhhccEEEEecCcEEEEE----cCcHHHHHHHhcCCCCHHHHHHH
Q ss_pred ----CCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecC
Q psy5142 128 ----PVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDN 178 (410)
Q Consensus 128 ----p~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~ 178 (410)
-..+|.++|.++|.+| +. +|++-.-..+ .|- ..|.|++
T Consensus 102 e~v~~hgcT~e~I~~~F~~y----s~--~~~~e~~~~~-----eFD--~~i~Fed 143 (175)
T PF12993_consen 102 ELVGKHGCTLEDILELFHKY----SD--NVHCEEMDNG-----EFD--YLIYFED 143 (175)
T ss_pred HHHhcCCcCHHHHHHHHHHh----cC--CeEEEeecCC-----CCC--EEEEecC
No 262
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=31.10 E-value=84 Score=24.41 Aligned_cols=34 Identities=18% Similarity=0.383 Sum_probs=24.7
Q ss_pred ceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 149 KITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 149 ~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
.|.+|..+. ..+||.|||=.++.++..|+....+
T Consensus 33 ~I~Si~~~~---------~lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 33 NIYSIFAPD---------SLKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp ---EEEE-T---------TSTSEEEEEESSHHHHHHHHTT-TT
T ss_pred ceEEEEEeC---------CCceEEEEEeCCHHHHHHHHhcccc
Confidence 566666553 5799999999999999999988773
No 263
>PF13865 FoP_duplication: C-terminal duplication domain of Friend of PRMT1
Probab=30.67 E-value=58 Score=24.84 Aligned_cols=10 Identities=30% Similarity=0.508 Sum_probs=4.2
Q ss_pred CCCCCCCCcc
Q psy5142 393 TKRSRGGNFE 402 (410)
Q Consensus 393 ~~~~rgg~~~ 402 (410)
++++|+++..
T Consensus 24 ~r~~r~~~~~ 33 (74)
T PF13865_consen 24 GRGGRGGRGK 33 (74)
T ss_pred CCCCCCCCCC
Confidence 3344444333
No 264
>KOG4410|consensus
Probab=27.96 E-value=1.4e+02 Score=28.94 Aligned_cols=50 Identities=12% Similarity=0.246 Sum_probs=37.2
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCCh
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKE 325 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~ 325 (410)
+..+-+++.||+.++--.||+..+.+.+. ....+...---+.||+.|-+.
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~---~pm~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKREC---TPMSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCC---CceeEeeecCCcceeEecCCc
Confidence 33456999999999999999999999881 223344433345699999874
No 265
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=27.06 E-value=1.3e+02 Score=22.16 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=17.3
Q ss_pred HHHHHHHHhhccCCCCceEEEEEccc
Q psy5142 133 LDDIKDFFKKNTSEDVKITNIIMRNY 158 (410)
Q Consensus 133 ~~~L~~~F~~~~~~~G~I~~v~l~~~ 158 (410)
..+|+++|++. |+|.-+-+-..
T Consensus 8 ~~~iR~~fs~l----G~I~vLYvn~~ 29 (62)
T PF15513_consen 8 TAEIRQFFSQL----GEIAVLYVNPY 29 (62)
T ss_pred HHHHHHHHHhc----CcEEEEEEccc
Confidence 46899999999 99987666433
No 266
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=26.17 E-value=52 Score=34.02 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=11.6
Q ss_pred chhHHHHHHHHHHHHHhCCC
Q psy5142 18 EVSKLENQIIEQIEYYFSDI 37 (410)
Q Consensus 18 ~~~~~~~~i~~QlEfYfsd~ 37 (410)
+.-+|..++..++.-|+...
T Consensus 83 PtreLa~Qi~~~~~~~~~~~ 102 (456)
T PRK10590 83 PTRELAAQIGENVRDYSKYL 102 (456)
T ss_pred CcHHHHHHHHHHHHHHhccC
Confidence 44556666666666665433
No 267
>KOG0804|consensus
Probab=24.61 E-value=2.2e+02 Score=29.51 Aligned_cols=64 Identities=9% Similarity=0.198 Sum_probs=49.9
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCc----eEEEEeCChhHHHHHHHHhcCCCeEEc
Q psy5142 275 GALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEP----TAFVRYKKENNAEAVLKALGSKEIVIK 343 (410)
Q Consensus 275 g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~----~afV~F~~~e~A~~Al~~l~~~~~~i~ 343 (410)
+..|.|-.+|-.++-.||-.++..+- ..|..+.+.++.. ...|+|.+.++|...-..+| |..++
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~---~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efN--Gk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFI---KQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFN--GKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHh---hhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcC--CCcCC
Confidence 77899999999999999999988764 2566666665322 38899999999999999994 44444
No 268
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=24.10 E-value=40 Score=32.97 Aligned_cols=46 Identities=17% Similarity=0.298 Sum_probs=32.7
Q ss_pred EEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEecCchHHHHHHHHhHHHH
Q psy5142 318 AFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVTGEEEQTVLDRMKIDI 368 (410)
Q Consensus 318 afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l~g~eE~~yw~k~~~~~ 368 (410)
|||.|++..+|+.|++.+. ..++..+.+. ...+-..-+|+.+....
T Consensus 1 aFVtF~~~~~a~~~~q~~~----~~~~~~~~v~-~APeP~DI~W~NL~~~~ 46 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLL----SKRPNSWRVS-PAPEPDDIIWENLSISS 46 (325)
T ss_pred CEEEECCHHHHHHHHHHHh----cCCCCCceEe-eCCCcccccccccCCCh
Confidence 7999999999999999872 2234555454 44566777888875433
No 269
>KOG2945|consensus
Probab=21.29 E-value=74 Score=31.99 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=0.0
Q ss_pred cccCCCCCCCCCCCCCCCCCCCccccccccC
Q psy5142 379 KKSGRKFGKKGPRGTKRSRGGNFESNKKAKV 409 (410)
Q Consensus 379 ~~rg~~~~grg~~G~~~~rgg~~~~~~~~~~ 409 (410)
++.++|+.||||||.++.+|+-..+|-.-.|
T Consensus 325 ~~~~~RgrGrGgRg~ggn~g~~~~~~~aP~~ 355 (365)
T KOG2945|consen 325 GGGGPRGRGRGGRGEGGNQGPHRRQAAAPAV 355 (365)
T ss_pred CCCCCccCCCCCCCCCCccCccccccCCCCC
No 270
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=20.92 E-value=3.2e+02 Score=21.03 Aligned_cols=60 Identities=20% Similarity=0.128 Sum_probs=41.0
Q ss_pred eeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhc
Q psy5142 121 SLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNEN 189 (410)
Q Consensus 121 tv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~ 189 (410)
.-|+=..+.+++..+|+..++..+. -.|..|+....+.. .+ =|||++..-.+|...-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~--VkV~~Vnt~~~~~~------~K-KA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFD--VKVEKVNTLITPRG------EK-KAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhC--CceEEEEeEEcCCC------ce-EEEEEECCCCcHHHHHHhh
Confidence 4666677889999999999987532 36777765443321 11 2999999888887665443
No 271
>KOG1751|consensus
Probab=20.81 E-value=2.8e+02 Score=24.44 Aligned_cols=56 Identities=27% Similarity=0.351 Sum_probs=35.0
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcC-CCCCCeeEEEeeCCCceEEEEeCChhHHHHHH
Q psy5142 275 GALLKISDIKEPVSREDIREVLEKVQ-TDDQEIVFIEFNVGEPTAFVRYKKENNAEAVL 332 (410)
Q Consensus 275 g~~l~v~nL~~~~t~edLk~~F~~~G-~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al 332 (410)
+++||+..+. .+..+|++.+.++- ++-..|..+--+.|...|||++...-+|....
T Consensus 95 Ntlvf~vd~k--ankhqiKqAVkkLyd~dvakvntli~p~g~kkayv~la~dydaldva 151 (157)
T KOG1751|consen 95 NTLVFIVDSK--ANKHQIKQAVKKLYDTDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 151 (157)
T ss_pred ceeEEEEecc--cchHHHHHHHHHHhccchhhheeeecCCCceeEEEecCCchhHHHHh
Confidence 4566776544 45699999999854 33233333323345557999999876655443
No 272
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=20.76 E-value=2.3e+02 Score=22.48 Aligned_cols=18 Identities=17% Similarity=0.418 Sum_probs=15.5
Q ss_pred CCCCCCHHHHHHHHHh-cC
Q psy5142 283 IKEPVSREDIREVLEK-VQ 300 (410)
Q Consensus 283 L~~~~t~edLk~~F~~-~G 300 (410)
++..++..+|+..|+. ||
T Consensus 27 V~~~a~K~eIK~aie~lf~ 45 (92)
T PRK05738 27 VAPDATKPEIKAAVEKLFG 45 (92)
T ss_pred ECCCCCHHHHHHHHHHHcC
Confidence 5678999999999998 55
No 273
>KOG4008|consensus
Probab=20.67 E-value=76 Score=29.87 Aligned_cols=35 Identities=14% Similarity=0.318 Sum_probs=30.7
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEE
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIM 155 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l 155 (410)
...+++|+-|+|..+|++-|..+.+++ |.+..+..
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsql----g~vq~~~y 72 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQL----GHVQELLY 72 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHh----hhhhheec
Confidence 457899999999999999999999999 87766654
Done!