Query psy5142
Match_columns 410
No_of_seqs 321 out of 2280
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 18:24:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5142.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5142hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2voo_A Lupus LA protein; RNA-b 100.0 2.4E-45 8.1E-50 335.1 16.8 192 11-240 1-192 (193)
2 2cqk_A C-MPL binding protein; 100.0 7.5E-31 2.6E-35 210.9 7.5 95 11-108 3-97 (101)
3 1s29_A LA protein; winged heli 100.0 1.2E-30 4.1E-35 207.0 7.7 85 19-107 7-92 (92)
4 4f02_A Polyadenylate-binding p 99.9 2.4E-26 8.4E-31 211.9 18.1 167 118-358 14-184 (213)
5 3md3_A Nuclear and cytoplasmic 99.9 4.4E-26 1.5E-30 199.8 18.1 159 120-353 1-165 (166)
6 1l3k_A Heterogeneous nuclear r 99.9 8.1E-26 2.8E-30 204.2 16.3 166 117-354 11-182 (196)
7 1b7f_A Protein (SXL-lethal pro 99.9 1.8E-25 6.2E-30 196.7 17.4 157 119-351 3-167 (168)
8 1fxl_A Paraneoplastic encephal 99.9 2.8E-25 9.6E-30 194.9 16.4 156 119-350 2-165 (167)
9 2qfj_A FBP-interacting repress 99.9 3.9E-25 1.3E-29 202.7 16.6 173 116-353 25-203 (216)
10 3nmr_A Cugbp ELAV-like family 99.9 1.3E-24 4.4E-29 192.3 18.1 165 118-352 2-174 (175)
11 2cjk_A Nuclear polyadenylated 99.9 3.4E-25 1.2E-29 194.9 13.2 158 118-354 2-165 (167)
12 2g4b_A Splicing factor U2AF 65 99.9 1E-23 3.5E-28 186.3 17.4 152 118-352 3-171 (172)
13 1owx_A Lupus LA protein, SS-B, 99.9 2.2E-24 7.6E-29 180.2 11.4 104 269-377 12-117 (121)
14 3smz_A Protein raver-1, ribonu 99.9 2.8E-23 9.7E-28 199.0 18.7 167 119-358 95-267 (284)
15 3pgw_A U1-A; protein-RNA compl 99.9 2.1E-23 7.2E-28 199.7 17.4 191 117-352 7-280 (282)
16 2yh0_A Splicing factor U2AF 65 99.9 3.3E-23 1.1E-27 187.2 16.7 174 118-354 3-193 (198)
17 3tyt_A Heterogeneous nuclear r 99.9 4.5E-23 1.5E-27 189.3 17.2 177 118-345 3-193 (205)
18 1fje_B Nucleolin RBD12, protei 99.9 8.8E-24 3E-28 187.7 11.1 161 117-354 11-173 (175)
19 2adc_A Polypyrimidine tract-bi 99.9 5.3E-22 1.8E-26 184.8 18.7 191 117-353 32-226 (229)
20 1qm9_A Polypyrimidine tract-bi 99.9 2.4E-22 8.3E-27 182.2 15.0 184 118-353 2-195 (198)
21 3sde_A Paraspeckle component 1 99.9 3.1E-22 1.1E-26 190.1 16.0 153 117-355 20-179 (261)
22 2ghp_A U4/U6 snRNA-associated 99.9 3.2E-22 1.1E-26 192.4 15.3 165 118-353 116-289 (292)
23 3smz_A Protein raver-1, ribonu 99.9 1.9E-21 6.4E-26 186.2 19.3 150 116-354 19-174 (284)
24 2ghp_A U4/U6 snRNA-associated 99.9 2.5E-21 8.5E-26 186.1 17.8 154 116-354 38-196 (292)
25 1s79_A Lupus LA protein; RRM, 99.7 8.4E-18 2.9E-22 137.3 7.9 89 115-241 7-95 (103)
26 4f25_A Polyadenylate-binding p 99.7 1.6E-16 5.6E-21 132.0 8.9 66 119-196 5-70 (115)
27 4fxv_A ELAV-like protein 1; RN 99.6 1.1E-15 3.9E-20 123.6 8.5 70 117-196 17-86 (99)
28 3pgw_S U1-70K; protein-RNA com 99.6 3.2E-15 1.1E-19 152.0 12.1 77 273-355 100-182 (437)
29 2kn4_A Immunoglobulin G-bindin 99.6 2.5E-14 8.4E-19 125.0 14.3 76 272-353 67-148 (158)
30 3s8s_A Histone-lysine N-methyl 99.6 7.7E-15 2.6E-19 121.0 8.4 69 118-196 5-73 (110)
31 2lxi_A RNA-binding protein 10; 99.6 2.2E-15 7.5E-20 119.9 4.9 63 120-190 2-65 (91)
32 2i2y_A Fusion protein consists 99.5 2.5E-14 8.5E-19 124.1 10.5 78 271-354 69-147 (150)
33 3mdf_A Peptidyl-prolyl CIS-tra 99.5 1.6E-14 5.4E-19 112.6 8.0 70 117-196 5-74 (85)
34 3bs9_A Nucleolysin TIA-1 isofo 99.5 2.3E-14 7.7E-19 112.3 8.7 69 118-196 5-73 (87)
35 2lkz_A RNA-binding protein 5; 99.5 4.3E-15 1.5E-19 119.3 4.7 67 117-191 7-75 (95)
36 3p5t_L Cleavage and polyadenyl 99.5 1.1E-14 3.7E-19 115.3 6.4 67 120-196 2-70 (90)
37 3ucg_A Polyadenylate-binding p 99.5 2E-14 6.8E-19 113.1 7.5 70 116-196 3-72 (89)
38 1whw_A Hypothetical protein ri 99.5 3.1E-14 1.1E-18 114.4 8.7 70 117-196 6-75 (99)
39 3lqv_A PRE-mRNA branch site pr 99.5 2.2E-14 7.4E-19 118.7 7.8 101 119-300 8-108 (115)
40 2dnz_A Probable RNA-binding pr 99.5 4.6E-14 1.6E-18 112.5 9.2 69 118-196 4-72 (95)
41 3md1_A Nuclear and cytoplasmic 99.5 4E-14 1.4E-18 109.8 8.5 67 120-196 2-68 (83)
42 3s7r_A Heterogeneous nuclear r 99.5 2.4E-14 8.2E-19 112.3 7.2 66 117-190 9-74 (87)
43 2ywk_A Putative RNA-binding pr 99.5 4E-14 1.4E-18 112.8 8.2 69 117-196 14-82 (95)
44 1p27_B RNA-binding protein 8A; 99.5 6.1E-14 2.1E-18 114.1 9.4 70 117-196 21-90 (106)
45 2dgs_A DAZ-associated protein 99.5 5.4E-14 1.9E-18 113.1 8.9 69 117-196 8-76 (99)
46 1x5s_A Cold-inducible RNA-bind 99.5 4E-14 1.4E-18 114.4 8.1 70 117-196 10-79 (102)
47 2cqc_A Arginine/serine-rich sp 99.5 4.3E-14 1.5E-18 112.5 8.0 70 117-196 13-82 (95)
48 1x5u_A Splicing factor 3B subu 99.5 5.5E-14 1.9E-18 114.2 8.7 70 117-196 13-82 (105)
49 2x1f_A MRNA 3'-END-processing 99.5 5.4E-14 1.8E-18 112.5 8.5 68 119-196 2-69 (96)
50 2e5h_A Zinc finger CCHC-type a 99.5 3.9E-14 1.3E-18 112.7 7.5 70 117-196 14-83 (94)
51 2dgo_A Cytotoxic granule-assoc 99.5 5.8E-14 2E-18 116.1 8.8 70 117-196 13-82 (115)
52 1sjq_A Polypyrimidine tract-bi 99.5 6.6E-14 2.3E-18 114.2 9.0 78 272-353 13-90 (105)
53 3ex7_B RNA-binding protein 8A; 99.5 8.3E-14 2.8E-18 117.0 9.8 78 270-353 17-100 (126)
54 2cq0_A Eukaryotic translation 99.5 3.4E-14 1.1E-18 115.2 7.1 70 117-196 13-82 (103)
55 4a8x_A RNA-binding protein wit 99.5 5E-14 1.7E-18 110.4 7.9 70 118-196 3-72 (88)
56 2rs2_A Musashi-1, RNA-binding 99.5 3.8E-14 1.3E-18 116.5 7.5 71 115-196 21-91 (109)
57 2do4_A Squamous cell carcinoma 99.5 5.2E-14 1.8E-18 113.4 8.1 69 117-196 15-83 (100)
58 3r27_A HnRNP L, heterogeneous 99.5 1.6E-13 5.5E-18 110.8 10.9 80 271-354 17-96 (100)
59 1sjq_A Polypyrimidine tract-bi 99.5 5.7E-14 2E-18 114.6 8.3 66 117-196 14-79 (105)
60 2la6_A RNA-binding protein FUS 99.5 9.8E-14 3.3E-18 111.6 9.4 70 117-196 11-88 (99)
61 2cph_A RNA binding motif prote 99.5 7.6E-14 2.6E-18 113.7 8.8 70 117-196 13-84 (107)
62 2dnm_A SRP46 splicing factor; 99.5 4.3E-14 1.5E-18 114.5 7.2 70 117-196 11-80 (103)
63 2cpf_A RNA binding motif prote 99.5 5.8E-14 2E-18 112.6 7.8 69 118-196 4-75 (98)
64 1uaw_A Mouse-musashi-1; RNP-ty 99.5 2.3E-14 7.8E-19 109.6 5.1 66 120-196 1-66 (77)
65 2cq4_A RNA binding motif prote 99.5 7.2E-14 2.5E-18 115.4 8.5 71 115-196 21-91 (114)
66 2krb_A Eukaryotic translation 99.5 7.3E-14 2.5E-18 108.2 8.0 65 120-196 2-72 (81)
67 1x4e_A RNA binding motif, sing 99.5 3.5E-14 1.2E-18 110.8 6.2 66 118-191 4-69 (85)
68 1x5t_A Splicing factor 3B subu 99.5 4E-14 1.4E-18 113.0 6.7 69 118-196 4-73 (96)
69 1p1t_A Cleavage stimulation fa 99.5 4.8E-14 1.6E-18 114.3 7.2 70 117-196 6-75 (104)
70 2mss_A Protein (musashi1); RNA 99.5 4.9E-14 1.7E-18 107.3 6.8 65 121-196 1-65 (75)
71 2dgu_A Heterogeneous nuclear r 99.5 6.1E-13 2.1E-17 107.8 13.8 74 272-353 8-81 (103)
72 1oo0_B CG8781-PA, drosophila Y 99.5 8.9E-14 3.1E-18 114.0 8.9 70 117-196 24-93 (110)
73 2jrs_A RNA-binding protein 39; 99.5 9.1E-14 3.1E-18 114.0 8.9 70 117-196 24-93 (108)
74 1x4h_A RNA-binding protein 28; 99.5 7.2E-14 2.5E-18 114.6 8.3 66 117-190 13-78 (111)
75 2div_A TRNA selenocysteine ass 99.5 6.3E-14 2.2E-18 112.6 7.7 69 118-196 8-77 (99)
76 2jwn_A Embryonic polyadenylate 99.5 8.8E-14 3E-18 116.5 8.7 73 113-196 30-102 (124)
77 3ns6_A Eukaryotic translation 99.5 6.5E-14 2.2E-18 113.2 7.5 66 118-191 5-76 (100)
78 2cpz_A CUG triplet repeat RNA- 99.5 6E-14 2.1E-18 116.0 7.5 70 117-196 23-92 (115)
79 2khc_A Testis-specific RNP-typ 99.5 6.3E-14 2.2E-18 116.4 7.6 71 116-196 37-107 (118)
80 2cqb_A Peptidyl-prolyl CIS-tra 99.5 3.9E-14 1.3E-18 114.5 5.9 70 117-196 10-79 (102)
81 2dhg_A TRNA selenocysteine ass 99.5 1.4E-13 4.7E-18 111.6 9.1 65 118-191 8-73 (104)
82 2cqd_A RNA-binding region cont 99.5 9.4E-14 3.2E-18 115.0 8.1 68 116-191 14-81 (116)
83 3n9u_C Cleavage and polyadenyl 99.5 1.5E-13 5E-18 120.4 9.8 69 118-196 54-124 (156)
84 3r27_A HnRNP L, heterogeneous 99.5 7.8E-14 2.7E-18 112.7 7.4 66 117-196 19-84 (100)
85 2dh8_A DAZ-associated protein 99.5 6.9E-14 2.4E-18 113.7 6.9 69 117-196 14-82 (105)
86 2fy1_A RNA-binding motif prote 99.5 1.3E-13 4.5E-18 114.6 8.7 69 117-196 5-73 (116)
87 1h2v_Z 20 kDa nuclear CAP bind 99.5 8.9E-14 3E-18 121.4 7.9 77 272-354 36-118 (156)
88 2d9p_A Polyadenylate-binding p 99.5 1.1E-13 3.8E-18 112.1 7.7 68 117-196 13-80 (103)
89 3ex7_B RNA-binding protein 8A; 99.5 1.5E-13 5.2E-18 115.4 8.7 70 117-196 20-89 (126)
90 2wbr_A GW182, gawky, LD47780P; 99.5 6.3E-13 2.2E-17 104.2 11.5 74 275-354 7-80 (89)
91 1iqt_A AUF1, heterogeneous nuc 99.4 5.2E-14 1.8E-18 107.1 5.1 65 121-196 1-65 (75)
92 2kxn_B Transformer-2 protein h 99.4 1.6E-13 5.6E-18 116.3 8.5 70 117-196 44-113 (129)
93 3ulh_A THO complex subunit 4; 99.4 1.9E-13 6.4E-18 111.4 8.6 68 118-196 28-95 (107)
94 2cpe_A RNA-binding protein EWS 99.4 1.1E-13 3.6E-18 114.1 7.0 71 116-196 12-90 (113)
95 2dnh_A Bruno-like 5, RNA bindi 99.4 2.5E-13 8.4E-18 110.3 9.1 66 117-191 13-78 (105)
96 2dng_A Eukaryotic translation 99.4 1.5E-13 5.3E-18 111.3 7.8 67 118-196 14-80 (103)
97 2cqi_A Nucleolysin TIAR; RNA r 99.4 1.7E-13 5.9E-18 110.9 8.1 68 117-196 13-80 (103)
98 1x4c_A Splicing factor, argini 99.4 1.4E-12 4.9E-17 106.6 13.7 75 272-353 12-91 (108)
99 2cq1_A PTB-like protein L; RRM 99.4 3.4E-13 1.2E-17 109.4 9.8 79 271-353 11-89 (101)
100 1wi8_A EIF-4B, eukaryotic tran 99.4 1.5E-13 5.1E-18 111.5 7.6 67 118-196 14-81 (104)
101 2ki2_A SS-DNA binding protein 99.4 7.5E-14 2.6E-18 110.1 5.6 66 120-196 2-67 (90)
102 2dgv_A HnRNP M, heterogeneous 99.4 2.8E-13 9.6E-18 107.2 8.8 67 118-196 7-73 (92)
103 1x4d_A Matrin 3; structural ge 99.4 2.9E-13 1E-17 110.0 9.0 78 272-353 12-90 (102)
104 2cq3_A RNA-binding protein 9; 99.4 2.6E-13 8.8E-18 109.9 8.6 68 117-196 13-80 (103)
105 1wg5_A Heterogeneous nuclear r 99.4 2.1E-13 7.1E-18 111.0 8.1 68 117-196 13-81 (104)
106 2do0_A HnRNP M, heterogeneous 99.4 2.2E-13 7.6E-18 112.3 8.2 69 117-196 13-81 (114)
107 1wex_A Hypothetical protein (r 99.4 2.1E-13 7.3E-18 111.2 7.9 65 118-196 14-78 (104)
108 1x4d_A Matrin 3; structural ge 99.4 7.7E-14 2.6E-18 113.4 5.2 65 118-196 14-79 (102)
109 4fxv_A ELAV-like protein 1; RN 99.4 7.9E-13 2.7E-17 106.7 11.1 76 272-353 16-97 (99)
110 2dis_A Unnamed protein product 99.4 2.6E-13 8.8E-18 111.0 8.4 66 117-190 6-73 (109)
111 1wex_A Hypothetical protein (r 99.4 4.7E-13 1.6E-17 109.1 9.8 79 271-353 11-89 (104)
112 2ek1_A RNA-binding protein 12; 99.4 8.2E-14 2.8E-18 111.0 5.1 69 118-196 14-82 (95)
113 1u6f_A Tcubp1, RNA-binding pro 99.4 2.3E-13 7.9E-18 116.3 8.0 71 116-196 39-109 (139)
114 2cqg_A TDP-43, TAR DNA-binding 99.4 2.5E-13 8.4E-18 110.0 7.6 64 117-188 13-76 (103)
115 2cpy_A RNA-binding protein 12; 99.4 9.5E-14 3.2E-18 114.9 5.1 68 117-196 13-81 (114)
116 1h2v_Z 20 kDa nuclear CAP bind 99.4 3.5E-13 1.2E-17 117.6 9.0 70 117-196 37-106 (156)
117 2err_A Ataxin-2-binding protei 99.4 1.5E-13 5.3E-18 112.8 6.3 70 115-196 25-94 (109)
118 2j76_E EIF-4B, EIF4B, eukaryot 99.4 1.4E-13 4.8E-18 111.1 6.0 69 116-196 16-85 (100)
119 1whx_A Hypothetical protein ri 99.4 3.3E-13 1.1E-17 111.3 8.2 65 116-196 7-71 (111)
120 2dgp_A Bruno-like 4, RNA bindi 99.4 3.3E-13 1.1E-17 109.7 8.1 67 117-191 11-77 (106)
121 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 3.2E-13 1.1E-17 115.2 8.3 70 117-196 61-130 (140)
122 2ad9_A Polypyrimidine tract-bi 99.4 1.9E-13 6.6E-18 114.0 6.7 60 118-191 30-89 (119)
123 1x4b_A Heterogeneous nuclear r 99.4 1.8E-13 6.3E-18 113.3 6.5 70 116-196 24-93 (116)
124 2cqp_A RNA-binding protein 12; 99.4 1.1E-13 3.8E-18 110.9 4.9 70 117-196 13-82 (98)
125 2cq1_A PTB-like protein L; RRM 99.4 2.2E-13 7.6E-18 110.5 6.6 65 118-196 14-78 (101)
126 1x4a_A Splicing factor, argini 99.4 4.2E-13 1.4E-17 109.8 8.4 67 117-196 20-86 (109)
127 2db1_A Heterogeneous nuclear r 99.4 1.4E-13 4.8E-18 114.8 5.5 68 117-196 15-85 (118)
128 3beg_B Splicing factor, argini 99.4 5.1E-13 1.7E-17 110.8 8.8 74 273-353 14-92 (115)
129 2ad9_A Polypyrimidine tract-bi 99.4 2.9E-13 9.9E-18 113.0 7.0 79 271-353 27-105 (119)
130 2dgx_A KIAA0430 protein; RRM d 99.4 4E-13 1.4E-17 107.6 7.6 66 118-196 8-77 (96)
131 1wez_A HnRNP H', FTP-3, hetero 99.4 1.8E-13 6.1E-18 111.2 5.4 67 117-196 13-79 (102)
132 1u6f_A Tcubp1, RNA-binding pro 99.4 2.4E-12 8.4E-17 109.8 12.8 76 272-353 39-120 (139)
133 2wbr_A GW182, gawky, LD47780P; 99.4 4.3E-13 1.5E-17 105.1 7.1 63 118-196 6-68 (89)
134 1x4f_A Matrin 3; structural ge 99.4 1.7E-13 5.9E-18 113.1 5.0 65 118-196 24-89 (112)
135 2hgl_A HNRPF protein, heteroge 99.4 2E-13 6.7E-18 116.9 5.4 67 118-196 43-112 (136)
136 2m2b_A RNA-binding protein 10; 99.4 1.8E-13 6.3E-18 116.0 5.1 66 117-191 21-88 (131)
137 2nlw_A Eukaryotic translation 99.4 3.5E-13 1.2E-17 109.8 6.6 68 117-196 13-86 (105)
138 2lmi_A GRSF-1, G-rich sequence 99.4 2.3E-13 7.8E-18 111.3 5.4 68 117-196 9-79 (107)
139 2ytc_A PRE-mRNA-splicing facto 99.4 7.4E-13 2.5E-17 103.1 8.1 64 117-196 10-74 (85)
140 2lea_A Serine/arginine-rich sp 99.4 2.9E-13 9.9E-18 115.6 6.2 70 117-196 45-114 (135)
141 2cpi_A CCR4-NOT transcription 99.4 2.5E-13 8.4E-18 111.9 5.5 73 117-196 13-88 (111)
142 2kn4_A Immunoglobulin G-bindin 99.4 5.8E-13 2E-17 116.2 8.2 70 117-196 68-137 (158)
143 1rk8_A CG8781-PA, CG8781-PA pr 99.4 7.3E-13 2.5E-17 116.8 8.7 70 117-196 70-139 (165)
144 2kt5_A RNA and export factor-b 99.4 7E-13 2.4E-17 111.1 8.1 69 117-196 33-101 (124)
145 2dnn_A RNA-binding protein 12; 99.4 6.2E-13 2.1E-17 109.4 7.5 66 118-196 15-80 (109)
146 3md3_A Nuclear and cytoplasmic 99.4 1.9E-12 6.5E-17 112.5 10.8 105 73-196 50-154 (166)
147 2dgx_A KIAA0430 protein; RRM d 99.4 5.2E-12 1.8E-16 101.0 12.3 77 271-353 5-88 (96)
148 1x4f_A Matrin 3; structural ge 99.4 4.8E-13 1.6E-17 110.4 6.2 78 272-353 22-100 (112)
149 2hgm_A HNRPF protein, heteroge 99.4 6.8E-13 2.3E-17 112.0 7.1 64 118-190 41-105 (126)
150 2dha_A FLJ20171 protein; RRM d 99.4 3.9E-13 1.3E-17 113.0 5.6 68 117-196 21-92 (123)
151 2fy1_A RNA-binding motif prote 99.4 4.8E-12 1.6E-16 105.1 12.1 75 273-353 5-84 (116)
152 2dgw_A Probable RNA-binding pr 99.4 8.3E-13 2.8E-17 104.4 7.1 67 117-196 8-74 (91)
153 3q2s_C Cleavage and polyadenyl 99.4 6.6E-13 2.3E-17 123.6 7.5 69 118-196 67-137 (229)
154 1fj7_A Nucleolin RBD1, protein 99.4 4E-13 1.4E-17 108.3 5.2 68 117-196 15-82 (101)
155 2la4_A Nuclear and cytoplasmic 99.4 1E-12 3.6E-17 105.9 7.7 63 118-196 26-88 (101)
156 2jvr_A Nucleolar protein 3; RN 99.4 7.9E-13 2.7E-17 109.1 6.8 65 118-196 27-92 (111)
157 1x4a_A Splicing factor, argini 99.4 6.5E-12 2.2E-16 102.7 12.2 77 271-353 18-97 (109)
158 2xs2_A Deleted in azoospermia- 99.4 4.9E-13 1.7E-17 108.0 5.3 62 117-187 7-68 (102)
159 1x4g_A Nucleolysin TIAR; struc 99.4 1.4E-12 4.7E-17 106.8 7.9 66 115-196 21-86 (109)
160 2dgt_A RNA-binding protein 30; 99.4 7.5E-12 2.5E-16 99.1 12.0 74 272-353 7-80 (92)
161 3s8s_A Histone-lysine N-methyl 99.4 5E-12 1.7E-16 104.0 11.3 78 273-356 4-87 (110)
162 1why_A Hypothetical protein ri 99.3 1.7E-12 6E-17 103.8 8.1 63 118-196 16-78 (97)
163 2dnq_A RNA-binding protein 4B; 99.3 2.4E-12 8.2E-17 101.6 8.8 62 117-196 6-67 (90)
164 1x5o_A RNA binding motif, sing 99.3 1.7E-12 5.7E-17 107.0 8.0 66 117-191 23-88 (114)
165 2fc9_A NCL protein; structure 99.3 1E-12 3.5E-17 105.9 6.6 66 117-196 13-78 (101)
166 2cpj_A Non-POU domain-containi 99.3 1E-12 3.6E-17 105.5 6.6 64 117-196 13-76 (99)
167 1wel_A RNA-binding protein 12; 99.3 3.2E-13 1.1E-17 113.4 3.6 69 117-196 23-91 (124)
168 2hgn_A Heterogeneous nuclear r 99.3 5.5E-13 1.9E-17 114.5 5.0 67 117-196 44-110 (139)
169 2a3j_A U1 small nuclear ribonu 99.3 2.1E-12 7.3E-17 109.1 8.4 66 118-196 28-97 (127)
170 1why_A Hypothetical protein ri 99.3 3.2E-12 1.1E-16 102.3 9.1 76 272-353 14-91 (97)
171 2dnp_A RNA-binding protein 14; 99.3 7E-12 2.4E-16 98.8 10.7 73 273-353 7-79 (90)
172 1x4g_A Nucleolysin TIAR; struc 99.3 6.4E-12 2.2E-16 102.8 10.8 76 272-353 22-97 (109)
173 2dnz_A Probable RNA-binding pr 99.3 6.9E-12 2.3E-16 99.7 10.7 75 273-353 3-83 (95)
174 3mdf_A Peptidyl-prolyl CIS-tra 99.3 6E-12 2E-16 97.8 10.0 74 273-352 5-84 (85)
175 2cqi_A Nucleolysin TIAR; RNA r 99.3 1.8E-11 6.2E-16 98.9 13.1 76 272-353 12-91 (103)
176 2cpj_A Non-POU domain-containi 99.3 4.9E-12 1.7E-16 101.5 9.5 77 271-353 11-87 (99)
177 1nu4_A U1A RNA binding domain; 99.3 1.7E-12 5.8E-17 103.7 6.6 67 117-196 6-76 (97)
178 3bs9_A Nucleolysin TIA-1 isofo 99.3 7.5E-12 2.6E-16 97.7 10.2 75 273-353 4-84 (87)
179 2cpx_A Hypothetical protein FL 99.3 1E-12 3.6E-17 108.4 5.5 70 117-196 23-92 (115)
180 2i2y_A Fusion protein consists 99.3 4.3E-12 1.5E-16 109.8 9.7 66 116-196 70-135 (150)
181 2cq3_A RNA-binding protein 9; 99.3 1.1E-11 3.8E-16 100.1 11.4 76 272-353 12-91 (103)
182 1whw_A Hypothetical protein ri 99.3 9.6E-12 3.3E-16 99.7 10.9 75 273-353 6-86 (99)
183 2lcw_A RNA-binding protein FUS 99.0 1.4E-13 4.9E-18 114.0 0.0 70 117-196 5-82 (116)
184 2hvz_A Splicing factor, argini 99.3 1.8E-12 6E-17 104.5 6.4 62 120-196 1-62 (101)
185 3ulh_A THO complex subunit 4; 99.3 9.5E-12 3.2E-16 101.2 10.8 77 271-353 25-106 (107)
186 2dnp_A RNA-binding protein 14; 99.3 2.8E-12 9.4E-17 101.2 7.4 62 117-196 7-68 (90)
187 4f25_A Polyadenylate-binding p 99.3 4E-12 1.4E-16 105.3 8.6 73 276-354 6-82 (115)
188 1x5t_A Splicing factor 3B subu 99.3 6.3E-12 2.2E-16 100.1 9.4 75 273-353 3-84 (96)
189 2g4b_A Splicing factor U2AF 65 99.3 5.3E-12 1.8E-16 110.7 9.9 102 73-196 60-161 (172)
190 1l3k_A Heterogeneous nuclear r 99.3 7E-12 2.4E-16 112.3 10.8 107 73-196 64-170 (196)
191 3md1_A Nuclear and cytoplasmic 99.3 6.8E-12 2.3E-16 97.0 9.3 73 276-354 2-80 (83)
192 2ytc_A PRE-mRNA-splicing facto 99.3 8.3E-12 2.8E-16 97.1 9.7 76 272-352 9-84 (85)
193 2kvi_A Nuclear polyadenylated 99.3 4.2E-12 1.4E-16 101.5 8.2 62 117-196 8-70 (96)
194 1whx_A Hypothetical protein ri 99.3 4.8E-12 1.7E-16 104.2 8.7 74 274-353 9-82 (111)
195 2e5j_A Methenyltetrahydrofolat 99.3 2.4E-12 8.3E-17 103.0 6.8 65 117-196 17-81 (97)
196 3nmr_A Cugbp ELAV-like family 99.3 7.8E-12 2.7E-16 109.7 10.6 66 117-191 93-158 (175)
197 2dgt_A RNA-binding protein 30; 99.3 3.4E-12 1.2E-16 101.1 7.4 62 117-196 8-69 (92)
198 2x1f_A MRNA 3'-END-processing 99.3 1.2E-11 4E-16 98.8 10.6 77 275-357 2-84 (96)
199 2xnq_A Nuclear polyadenylated 99.3 4.8E-12 1.7E-16 101.5 8.4 63 116-196 19-82 (97)
200 2cqc_A Arginine/serine-rich sp 99.3 1.9E-11 6.4E-16 97.1 11.7 77 271-353 11-93 (95)
201 2cpd_A Apobec-1 stimulating pr 99.3 2.5E-11 8.7E-16 97.3 12.6 75 271-353 11-87 (99)
202 4a8x_A RNA-binding protein wit 99.3 1E-11 3.6E-16 97.0 10.0 74 274-353 3-83 (88)
203 2f3j_A RNA and export factor b 99.3 3.9E-12 1.3E-16 113.7 8.5 68 118-196 87-154 (177)
204 1rk8_A CG8781-PA, CG8781-PA pr 99.3 9E-12 3.1E-16 109.7 10.7 78 270-353 67-150 (165)
205 2ywk_A Putative RNA-binding pr 99.3 1E-11 3.5E-16 98.7 9.9 76 272-353 13-93 (95)
206 2dnl_A Cytoplasmic polyadenyla 99.3 2.6E-12 8.9E-17 106.2 6.6 64 118-190 7-73 (114)
207 2dgu_A Heterogeneous nuclear r 99.3 3.5E-12 1.2E-16 103.2 7.0 61 118-196 10-70 (103)
208 2e5h_A Zinc finger CCHC-type a 99.3 1.8E-11 6.1E-16 97.1 11.0 76 271-352 12-93 (94)
209 2fc8_A NCL protein; structure 99.3 2.9E-12 1E-16 103.3 6.4 67 117-196 13-79 (102)
210 2do4_A Squamous cell carcinoma 99.3 1.5E-11 5.2E-16 98.8 10.7 76 272-353 14-94 (100)
211 1fxl_A Paraneoplastic encephal 99.3 1.2E-11 4.1E-16 107.5 10.8 100 73-191 53-152 (167)
212 2jvr_A Nucleolar protein 3; RN 99.3 1.6E-11 5.5E-16 101.2 10.9 77 273-354 26-104 (111)
213 2dnq_A RNA-binding protein 4B; 99.3 1.6E-11 5.4E-16 96.8 10.3 73 273-353 6-78 (90)
214 1b7f_A Protein (SXL-lethal pro 99.3 1.3E-11 4.6E-16 107.6 10.9 100 73-191 54-153 (168)
215 2cqd_A RNA-binding region cont 99.3 3.4E-11 1.2E-15 99.5 12.8 76 271-353 13-94 (116)
216 2la4_A Nuclear and cytoplasmic 99.3 7.8E-12 2.7E-16 100.7 8.7 75 273-353 25-99 (101)
217 2qfj_A FBP-interacting repress 99.3 5.1E-12 1.8E-16 115.0 8.5 70 117-196 123-192 (216)
218 1fjc_A Nucleolin RBD2, protein 99.3 2.3E-12 7.8E-17 102.8 5.4 66 116-196 13-78 (96)
219 2dgo_A Cytotoxic granule-assoc 99.3 2.6E-11 8.7E-16 100.0 11.8 77 271-353 11-93 (115)
220 2hzc_A Splicing factor U2AF 65 99.3 6.4E-12 2.2E-16 98.1 7.6 67 117-196 4-77 (87)
221 2jvo_A Nucleolar protein 3; nu 99.3 5E-12 1.7E-16 103.6 7.2 64 115-196 27-90 (108)
222 2hvz_A Splicing factor, argini 99.3 1.5E-11 5.1E-16 99.0 9.8 72 276-353 1-73 (101)
223 2xnq_A Nuclear polyadenylated 99.3 2.6E-11 8.9E-16 97.2 10.9 77 270-354 17-94 (97)
224 2dnm_A SRP46 splicing factor; 99.3 1.4E-11 4.8E-16 99.5 9.5 77 271-353 9-91 (103)
225 1oo0_B CG8781-PA, drosophila Y 99.3 2.7E-11 9.3E-16 99.0 11.3 78 270-353 21-104 (110)
226 2kvi_A Nuclear polyadenylated 99.3 6.6E-12 2.3E-16 100.3 7.4 74 272-353 7-81 (96)
227 2err_A Ataxin-2-binding protei 99.3 1.5E-11 5.1E-16 100.8 9.4 77 272-354 26-106 (109)
228 2cqb_A Peptidyl-prolyl CIS-tra 99.3 1.4E-11 4.7E-16 99.3 8.9 75 273-353 10-90 (102)
229 3d2w_A TAR DNA-binding protein 99.3 9.8E-12 3.4E-16 98.2 7.8 55 117-184 9-63 (89)
230 2dgv_A HnRNP M, heterogeneous 99.3 1E-11 3.5E-16 98.1 7.9 76 272-353 5-84 (92)
231 2cpf_A RNA binding motif prote 99.3 1.5E-11 5E-16 98.4 8.9 75 273-353 3-86 (98)
232 2cpz_A CUG triplet repeat RNA- 99.3 2E-11 6.8E-16 100.7 9.9 77 271-353 21-103 (115)
233 1x4h_A RNA-binding protein 28; 99.3 3.4E-11 1.2E-15 98.4 11.2 79 271-353 11-99 (111)
234 1p27_B RNA-binding protein 8A; 99.3 2E-11 6.7E-16 99.1 9.6 77 271-353 19-101 (106)
235 2e5g_A U6 snRNA-specific termi 99.3 1.1E-11 3.9E-16 98.5 8.0 63 118-196 7-69 (94)
236 3beg_B Splicing factor, argini 99.3 8.5E-12 2.9E-16 103.3 7.6 62 118-196 15-76 (115)
237 1x5u_A Splicing factor 3B subu 99.3 2.1E-11 7.2E-16 98.7 9.8 77 271-353 11-93 (105)
238 2dis_A Unnamed protein product 99.3 1.2E-11 4.1E-16 100.9 8.3 79 273-355 6-92 (109)
239 3q2s_C Cleavage and polyadenyl 99.3 8.2E-12 2.8E-16 116.1 7.8 81 274-358 67-153 (229)
240 2dnh_A Bruno-like 5, RNA bindi 99.2 1.2E-11 4.2E-16 100.1 7.9 75 273-353 13-95 (105)
241 2d9p_A Polyadenylate-binding p 99.2 1.1E-11 3.8E-16 100.1 7.6 76 272-353 12-91 (103)
242 2lkz_A RNA-binding protein 5; 99.2 1.6E-11 5.6E-16 98.3 8.4 76 276-353 10-93 (95)
243 1x4c_A Splicing factor, argini 99.2 1.9E-11 6.4E-16 99.9 8.9 59 118-191 14-72 (108)
244 4f02_A Polyadenylate-binding p 99.2 1.6E-11 5.4E-16 112.5 9.4 69 116-196 100-168 (213)
245 1nu4_A U1A RNA binding domain; 99.2 2E-11 7E-16 97.3 8.9 80 272-357 5-91 (97)
246 2cq0_A Eukaryotic translation 99.2 3.4E-11 1.2E-15 97.3 10.2 77 271-353 11-93 (103)
247 1wf1_A RNA-binding protein RAL 99.2 1.6E-11 5.4E-16 100.6 8.3 61 118-196 26-87 (110)
248 2la6_A RNA-binding protein FUS 99.2 3.3E-11 1.1E-15 96.7 10.0 77 270-352 8-98 (99)
249 1wf1_A RNA-binding protein RAL 99.2 4.5E-11 1.6E-15 97.8 10.8 74 272-353 24-98 (110)
250 2cph_A RNA binding motif prote 99.2 3.7E-11 1.3E-15 97.5 10.2 78 271-353 11-95 (107)
251 2jvo_A Nucleolar protein 3; nu 99.2 2.6E-11 9.1E-16 99.2 9.4 75 272-354 28-102 (108)
252 2cpd_A Apobec-1 stimulating pr 99.2 1.7E-11 5.9E-16 98.3 8.0 64 117-196 13-76 (99)
253 2e44_A Insulin-like growth fac 99.2 2.8E-11 9.6E-16 96.4 9.2 78 272-355 12-92 (96)
254 2e44_A Insulin-like growth fac 99.2 1.5E-11 5.2E-16 97.9 7.6 65 118-196 14-79 (96)
255 2do0_A HnRNP M, heterogeneous 99.2 2.6E-11 9E-16 99.7 9.3 76 272-353 12-92 (114)
256 2nlw_A Eukaryotic translation 99.2 4E-11 1.4E-15 97.4 10.2 76 273-354 13-99 (105)
257 2cq2_A Hypothetical protein LO 99.2 2.9E-11 9.9E-16 99.9 9.3 75 273-353 23-104 (114)
258 2khc_A Testis-specific RNP-typ 99.2 2.7E-11 9.1E-16 100.4 9.2 76 271-352 36-117 (118)
259 1x5p_A Negative elongation fac 99.2 1E-10 3.6E-15 93.4 12.4 74 272-353 12-85 (97)
260 1x5s_A Cold-inducible RNA-bind 99.2 3E-11 1E-15 97.3 9.2 76 272-353 9-90 (102)
261 2cjk_A Nuclear polyadenylated 99.2 1.1E-11 3.9E-16 108.0 7.2 69 117-196 85-153 (167)
262 2dgs_A DAZ-associated protein 99.2 4E-11 1.4E-15 96.1 9.8 75 272-353 7-87 (99)
263 3ucg_A Polyadenylate-binding p 99.2 3.8E-11 1.3E-15 94.0 9.3 72 275-353 6-83 (89)
264 2kt5_A RNA and export factor-b 99.2 7.8E-11 2.7E-15 98.5 11.7 78 271-354 31-113 (124)
265 2cpi_A CCR4-NOT transcription 99.2 3.1E-11 1.1E-15 99.1 9.0 76 272-353 12-99 (111)
266 1wf0_A TDP-43, TAR DNA-binding 99.2 4.1E-12 1.4E-16 99.8 3.4 56 118-186 4-59 (88)
267 2lxi_A RNA-binding protein 10; 99.2 1.8E-11 6.1E-16 97.0 7.1 75 276-354 2-82 (91)
268 1x5p_A Negative elongation fac 99.2 2.2E-11 7.6E-16 97.4 7.7 62 117-196 13-74 (97)
269 3s7r_A Heterogeneous nuclear r 99.2 6.7E-11 2.3E-15 92.4 10.3 72 273-351 9-86 (87)
270 2cq2_A Hypothetical protein LO 99.2 1.5E-11 5.2E-16 101.6 6.8 61 118-192 24-86 (114)
271 2cqh_A IGF-II mRNA-binding pro 99.2 8E-12 2.7E-16 99.1 4.9 59 118-191 7-66 (93)
272 1wi8_A EIF-4B, eukaryotic tran 99.2 7.2E-11 2.5E-15 95.6 10.7 75 271-353 11-92 (104)
273 3pgw_S U1-70K; protein-RNA com 99.2 1.4E-11 4.9E-16 125.1 8.0 70 117-196 100-169 (437)
274 2cpe_A RNA-binding protein EWS 99.2 4.5E-11 1.5E-15 98.2 9.5 76 272-353 12-101 (113)
275 3egn_A RNA-binding protein 40; 99.2 3.8E-12 1.3E-16 109.3 3.0 66 118-196 44-117 (143)
276 2jrs_A RNA-binding protein 39; 99.2 3.1E-11 1.1E-15 98.8 8.4 77 272-354 23-105 (108)
277 1wg1_A KIAA1579 protein, homol 99.2 1E-11 3.5E-16 97.6 5.2 62 118-196 4-65 (88)
278 2dgp_A Bruno-like 4, RNA bindi 99.2 6.3E-11 2.2E-15 96.1 10.1 76 272-353 10-94 (106)
279 2div_A TRNA selenocysteine ass 99.2 4.1E-11 1.4E-15 96.0 8.8 75 273-353 7-92 (99)
280 2e5j_A Methenyltetrahydrofolat 99.2 8.2E-11 2.8E-15 94.0 10.5 76 272-354 16-93 (97)
281 1s79_A Lupus LA protein; RRM, 99.2 2.3E-11 7.8E-16 98.9 7.3 72 274-352 10-86 (103)
282 2lea_A Serine/arginine-rich sp 99.2 1E-11 3.5E-16 105.9 5.5 76 272-353 44-125 (135)
283 1p1t_A Cleavage stimulation fa 99.2 3E-11 1E-15 97.5 7.9 78 275-358 8-91 (104)
284 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.2 1.2E-10 3.9E-15 99.1 11.9 75 271-351 59-139 (140)
285 3ns6_A Eukaryotic translation 99.2 1.6E-11 5.4E-16 99.1 6.0 73 275-353 6-91 (100)
286 2j8a_A Histone-lysine N-methyl 99.2 1.3E-11 4.4E-16 103.3 5.5 67 120-196 3-83 (136)
287 2db1_A Heterogeneous nuclear r 99.2 4.3E-11 1.5E-15 99.6 8.7 76 272-354 14-97 (118)
288 3lqv_A PRE-mRNA branch site pr 99.2 7.7E-11 2.6E-15 97.1 10.2 78 273-356 6-86 (115)
289 2a3j_A U1 small nuclear ribonu 99.2 6.9E-11 2.4E-15 99.8 9.8 80 271-356 25-111 (127)
290 2cqp_A RNA-binding protein 12; 99.2 1.8E-11 6.3E-16 97.8 6.0 77 272-354 12-94 (98)
291 2cq4_A RNA binding motif prote 99.2 9.5E-11 3.2E-15 96.5 10.2 73 274-353 24-102 (114)
292 2krb_A Eukaryotic translation 99.2 1.7E-11 5.8E-16 94.7 5.2 68 276-349 2-80 (81)
293 2dhg_A TRNA selenocysteine ass 99.2 3.3E-11 1.1E-15 97.4 7.0 76 272-353 6-88 (104)
294 3d2w_A TAR DNA-binding protein 99.2 1.2E-10 4.2E-15 91.8 10.1 77 272-356 8-85 (89)
295 2yh0_A Splicing factor U2AF 65 99.2 2.8E-11 9.6E-16 108.5 7.2 70 117-196 112-181 (198)
296 2cqh_A IGF-II mRNA-binding pro 99.2 3.6E-11 1.2E-15 95.2 7.0 74 273-353 6-81 (93)
297 1uaw_A Mouse-musashi-1; RNP-ty 99.2 2.5E-11 8.5E-16 92.5 5.8 70 276-352 1-76 (77)
298 2fc8_A NCL protein; structure 99.2 7.5E-11 2.6E-15 94.9 9.0 77 271-353 11-90 (102)
299 2hgl_A HNRPF protein, heteroge 99.2 3.9E-11 1.3E-15 102.5 7.5 78 272-356 41-126 (136)
300 1sjr_A Polypyrimidine tract-bi 99.2 6.3E-11 2.2E-15 103.9 8.8 61 119-191 46-106 (164)
301 2ek1_A RNA-binding protein 12; 99.2 2.5E-11 8.5E-16 96.4 5.7 75 273-353 13-93 (95)
302 2cpy_A RNA-binding protein 12; 99.2 1.3E-10 4.4E-15 95.9 10.2 76 273-355 13-94 (114)
303 2kxn_B Transformer-2 protein h 99.2 4.2E-11 1.4E-15 101.3 7.2 76 272-353 43-124 (129)
304 2dng_A Eukaryotic translation 99.2 1.9E-10 6.5E-15 92.9 10.6 75 271-353 11-91 (103)
305 2rs2_A Musashi-1, RNA-binding 99.2 1.2E-10 4.3E-15 95.3 9.5 75 273-354 23-103 (109)
306 2mss_A Protein (musashi1); RNA 99.2 4.1E-11 1.4E-15 90.9 6.0 67 278-351 2-74 (75)
307 2cqg_A TDP-43, TAR DNA-binding 99.1 2.1E-10 7.2E-15 92.5 10.4 74 272-353 12-91 (103)
308 1x4e_A RNA binding motif, sing 99.1 1.9E-11 6.3E-16 95.2 3.8 72 273-350 3-80 (85)
309 1fje_B Nucleolin RBD12, protei 99.1 1.6E-10 5.5E-15 101.7 10.3 99 73-196 63-161 (175)
310 2hzc_A Splicing factor U2AF 65 99.1 1.7E-10 5.8E-15 89.9 9.3 74 274-350 5-85 (87)
311 2lcw_A RNA-binding protein FUS 98.7 4.4E-12 1.5E-16 104.9 0.0 75 273-353 5-93 (116)
312 2cpx_A Hypothetical protein FL 99.1 1.1E-10 3.9E-15 96.0 8.5 76 272-353 22-103 (115)
313 1wez_A HnRNP H', FTP-3, hetero 99.1 8E-11 2.7E-15 95.4 7.3 74 272-353 12-90 (102)
314 2fc9_A NCL protein; structure 99.1 1.9E-10 6.5E-15 92.4 9.4 76 272-353 12-89 (101)
315 2pe8_A Splicing factor 45; RRM 99.1 1.2E-10 4.3E-15 94.9 8.4 69 118-196 7-81 (105)
316 3zzy_A Polypyrimidine tract-bi 99.1 1.1E-10 3.9E-15 98.5 8.4 60 119-191 28-88 (130)
317 3n9u_C Cleavage and polyadenyl 99.1 3.2E-10 1.1E-14 99.1 11.5 79 274-356 54-138 (156)
318 2dgw_A Probable RNA-binding pr 99.1 2.7E-10 9.2E-15 89.8 10.0 74 273-354 8-86 (91)
319 2dh8_A DAZ-associated protein 99.1 1.4E-10 4.9E-15 93.8 8.5 76 271-353 12-93 (105)
320 1x4b_A Heterogeneous nuclear r 99.1 2.8E-10 9.4E-15 93.9 9.9 73 274-353 26-104 (116)
321 1wg1_A KIAA1579 protein, homol 99.1 1.3E-10 4.3E-15 91.2 7.5 73 274-353 4-76 (88)
322 2lmi_A GRSF-1, G-rich sequence 99.1 6.2E-11 2.1E-15 96.7 5.8 76 272-354 8-91 (107)
323 2bz2_A Negative elongation fac 99.1 9.4E-11 3.2E-15 98.0 6.9 62 117-196 37-98 (121)
324 2jwn_A Embryonic polyadenylate 99.1 1.3E-10 4.3E-15 97.1 7.7 72 275-353 36-113 (124)
325 3tyt_A Heterogeneous nuclear r 99.1 2.8E-10 9.4E-15 103.9 10.3 75 273-353 2-78 (205)
326 2ki2_A SS-DNA binding protein 99.1 4.8E-11 1.7E-15 93.8 4.6 73 276-355 2-80 (90)
327 1fjc_A Nucleolin RBD2, protein 99.1 2.5E-10 8.6E-15 90.8 8.8 75 272-353 13-89 (96)
328 2diu_A KIAA0430 protein; struc 99.1 1.5E-10 5E-15 91.7 7.2 54 120-191 10-68 (96)
329 2e5i_A Heterogeneous nuclear r 99.1 3.5E-10 1.2E-14 94.9 9.7 72 276-353 26-100 (124)
330 1wel_A RNA-binding protein 12; 99.1 1E-10 3.4E-15 98.0 6.2 78 272-356 22-105 (124)
331 2f3j_A RNA and export factor b 99.1 3.5E-10 1.2E-14 100.9 10.2 79 271-355 84-167 (177)
332 2dnn_A RNA-binding protein 12; 99.1 4E-10 1.4E-14 92.5 9.4 72 274-353 15-91 (109)
333 2e5i_A Heterogeneous nuclear r 99.1 2.9E-10 9.8E-15 95.5 8.6 58 120-191 26-84 (124)
334 1iqt_A AUF1, heterogeneous nuc 99.1 9.6E-11 3.3E-15 88.7 5.1 68 277-351 1-74 (75)
335 2e5g_A U6 snRNA-specific termi 99.1 2.9E-10 9.9E-15 90.2 8.1 71 275-352 8-79 (94)
336 2m2b_A RNA-binding protein 10; 99.1 2.3E-10 7.9E-15 96.7 7.5 75 272-353 20-106 (131)
337 1wg5_A Heterogeneous nuclear r 99.1 2.8E-10 9.7E-15 92.2 7.5 75 272-353 12-92 (104)
338 1x5o_A RNA binding motif, sing 99.1 3.3E-10 1.1E-14 93.1 7.8 76 272-353 22-110 (114)
339 2diu_A KIAA0430 protein; struc 99.1 4.8E-10 1.7E-14 88.7 8.3 70 274-353 8-82 (96)
340 2hgn_A Heterogeneous nuclear r 99.1 4.9E-11 1.7E-15 102.2 2.8 73 273-353 44-121 (139)
341 2bz2_A Negative elongation fac 99.0 4.8E-10 1.6E-14 93.7 8.6 75 272-354 36-110 (121)
342 3p5t_L Cleavage and polyadenyl 99.0 1.6E-10 5.5E-15 91.0 5.3 74 276-353 2-81 (90)
343 3egn_A RNA-binding protein 40; 99.0 2.7E-10 9.2E-15 97.6 6.9 77 272-354 42-129 (143)
344 2dha_A FLJ20171 protein; RRM d 99.0 4.1E-10 1.4E-14 94.4 7.4 76 273-355 21-105 (123)
345 2j76_E EIF-4B, EIF4B, eukaryot 99.0 1.8E-10 6.2E-15 92.7 5.0 76 271-354 15-97 (100)
346 1fj7_A Nucleolin RBD1, protein 99.0 2.7E-10 9.3E-15 91.5 5.6 74 273-353 15-93 (101)
347 2xs2_A Deleted in azoospermia- 99.0 4.7E-10 1.6E-14 90.3 6.8 72 274-353 8-84 (102)
348 1sjr_A Polypyrimidine tract-bi 99.0 1.2E-09 4E-14 95.8 9.6 73 275-353 46-122 (164)
349 1wf0_A TDP-43, TAR DNA-binding 99.0 4.8E-10 1.7E-14 87.7 6.1 72 274-353 4-76 (88)
350 2hgm_A HNRPF protein, heteroge 99.0 5.9E-10 2E-14 93.8 6.8 77 272-355 39-121 (126)
351 3u1l_A PRE-mRNA-splicing facto 99.0 5.5E-10 1.9E-14 104.1 7.3 62 117-192 132-202 (240)
352 1jmt_A Splicing factor U2AF 35 99.0 1.6E-10 5.5E-15 94.0 3.1 62 124-196 20-93 (104)
353 3zzy_A Polypyrimidine tract-bi 99.0 2.4E-09 8.1E-14 90.4 10.3 73 275-353 28-104 (130)
354 3sde_A Paraspeckle component 1 99.0 1.7E-09 5.7E-14 102.1 10.4 76 271-352 18-93 (261)
355 2adc_A Polypyrimidine tract-bi 99.0 1.8E-09 6E-14 99.9 9.9 79 269-353 28-108 (229)
356 3pgw_A U1-A; protein-RNA compl 99.0 9.7E-10 3.3E-14 104.4 8.0 65 117-196 205-269 (282)
357 3u1l_A PRE-mRNA-splicing facto 98.9 1.3E-09 4.3E-14 101.7 8.0 78 272-355 131-229 (240)
358 3v4m_A Splicing factor U2AF 65 98.9 1.1E-09 3.8E-14 89.2 6.6 70 119-196 5-84 (105)
359 2dit_A HIV TAT specific factor 98.9 2E-09 7E-14 88.4 8.0 65 118-196 14-89 (112)
360 2pe8_A Splicing factor 45; RRM 98.9 6E-09 2E-13 84.8 9.8 75 273-353 6-92 (105)
361 2dnl_A Cytoplasmic polyadenyla 98.9 2.9E-09 9.8E-14 87.7 8.0 68 274-350 7-83 (114)
362 2d9o_A DNAJ (HSP40) homolog, s 98.9 4.7E-09 1.6E-13 84.6 8.8 49 129-190 27-75 (100)
363 1qm9_A Polypyrimidine tract-bi 98.9 2.6E-09 9E-14 95.9 7.8 74 275-354 3-78 (198)
364 3tht_A Alkylated DNA repair pr 98.9 2.8E-09 9.5E-14 104.5 7.6 62 117-192 16-79 (345)
365 2voo_A Lupus LA protein; RNA-b 98.9 3.8E-09 1.3E-13 95.5 7.9 72 275-353 109-185 (193)
366 3ue2_A Poly(U)-binding-splicin 98.8 3.9E-09 1.3E-13 87.8 6.9 73 118-196 19-96 (118)
367 2dit_A HIV TAT specific factor 98.8 2.7E-08 9.4E-13 81.5 10.8 76 273-354 13-101 (112)
368 2j8a_A Histone-lysine N-methyl 98.8 4.9E-08 1.7E-12 81.7 11.7 73 276-352 3-93 (136)
369 3v4m_A Splicing factor U2AF 65 98.8 2.1E-08 7.1E-13 81.5 9.2 74 274-353 4-95 (105)
370 1owx_A Lupus LA protein, SS-B, 98.8 4.5E-08 1.5E-12 81.4 10.5 65 118-196 17-83 (121)
371 3tht_A Alkylated DNA repair pr 98.7 3.8E-08 1.3E-12 96.4 9.4 63 272-338 15-79 (345)
372 2dnr_A Synaptojanin-1; RRM dom 98.7 8.5E-08 2.9E-12 75.2 8.5 75 272-355 4-86 (91)
373 3ue2_A Poly(U)-binding-splicin 98.6 8.2E-08 2.8E-12 79.7 7.9 75 274-354 19-108 (118)
374 1jmt_A Splicing factor U2AF 35 98.6 2E-08 6.8E-13 81.5 3.6 66 280-351 20-102 (104)
375 3s6e_A RNA-binding protein 39; 98.6 8.6E-08 2.9E-12 79.1 7.1 64 119-196 7-80 (114)
376 2d9o_A DNAJ (HSP40) homolog, s 98.5 3E-07 1E-11 74.0 8.7 61 285-353 27-88 (100)
377 3s6e_A RNA-binding protein 39; 98.5 2.1E-07 7.3E-12 76.7 7.9 73 275-353 7-91 (114)
378 1ufw_A Synaptojanin 2; RNP dom 98.5 5.5E-07 1.9E-11 70.9 8.5 75 270-353 10-93 (95)
379 2l9w_A U4/U6 snRNA-associated- 98.2 9.8E-06 3.4E-10 65.2 10.0 72 275-352 21-97 (117)
380 3dxb_A Thioredoxin N-terminall 98.0 6.1E-06 2.1E-10 75.5 6.7 60 131-196 141-200 (222)
381 2dnr_A Synaptojanin-1; RRM dom 97.9 9.1E-06 3.1E-10 63.6 5.0 59 119-196 7-73 (91)
382 1ufw_A Synaptojanin 2; RNP dom 97.8 2.9E-05 9.9E-10 61.1 5.3 59 119-196 15-82 (95)
383 2dhx_A Poly (ADP-ribose) polym 97.7 0.00019 6.4E-09 57.2 8.8 61 118-190 7-68 (104)
384 3dxb_A Thioredoxin N-terminall 97.6 5.7E-05 1.9E-09 68.9 6.2 60 288-353 142-211 (222)
385 4eyt_A Telomerase associated p 97.6 0.0011 3.6E-08 51.2 11.2 88 272-365 9-102 (129)
386 1whv_A Poly(A)-specific ribonu 97.5 0.0003 1E-08 55.4 8.1 58 271-335 12-69 (100)
387 2l9w_A U4/U6 snRNA-associated- 97.4 0.00068 2.3E-08 54.5 8.6 67 118-196 20-87 (117)
388 3ctr_A Poly(A)-specific ribonu 97.2 0.00028 9.4E-09 55.8 4.3 56 274-336 5-60 (101)
389 2dhx_A Poly (ADP-ribose) polym 97.2 0.0013 4.5E-08 52.3 7.7 71 274-351 7-80 (104)
390 1uw4_A UPF3X; nonsense mediate 96.6 0.0067 2.3E-07 47.4 7.4 56 277-336 3-66 (91)
391 1wey_A Calcipressin 1; structu 96.1 0.019 6.4E-07 45.8 7.3 72 276-353 6-82 (104)
392 1whv_A Poly(A)-specific ribonu 96.0 0.0069 2.4E-07 47.6 4.6 53 120-189 17-69 (100)
393 3ctr_A Poly(A)-specific ribonu 95.9 0.0079 2.7E-07 47.4 4.4 54 121-190 7-60 (101)
394 3pq1_A Poly(A) RNA polymerase; 95.8 0.0041 1.4E-07 62.9 3.0 62 113-188 47-108 (464)
395 1uw4_A UPF3X; nonsense mediate 95.7 0.033 1.1E-06 43.4 7.1 69 120-196 2-70 (91)
396 1wwh_A Nucleoporin 35, nucleop 95.6 0.033 1.1E-06 45.6 7.3 59 117-190 22-80 (119)
397 1wwh_A Nucleoporin 35, nucleop 95.2 0.058 2E-06 44.1 7.4 71 275-353 24-95 (119)
398 2l08_A Regulator of nonsense t 95.0 0.022 7.4E-07 44.9 4.2 56 277-336 11-74 (97)
399 2lsl_A Telomerase associated p 92.6 0.014 4.7E-07 45.4 0.0 92 270-365 13-133 (137)
400 2l08_A Regulator of nonsense t 92.8 0.13 4.4E-06 40.5 4.7 70 119-196 9-78 (97)
401 1wey_A Calcipressin 1; structu 92.5 0.21 7.3E-06 39.7 5.7 62 119-196 5-71 (104)
402 3p3d_A Nucleoporin 53; structu 90.4 0.17 5.7E-06 42.0 3.1 67 119-190 7-83 (132)
403 3htx_A HEN1; HEN1, small RNA m 85.9 1 3.5E-05 48.8 6.4 82 18-102 103-204 (950)
404 3pq1_A Poly(A) RNA polymerase; 84.8 0.67 2.3E-05 46.7 4.1 53 277-334 55-108 (464)
405 3p3d_A Nucleoporin 53; structu 82.9 1.8 6E-05 35.9 5.2 69 277-353 9-97 (132)
406 1b34_A Protein (small nuclear 78.0 0.74 2.5E-05 37.5 1.3 15 311-325 59-73 (119)
407 2hh3_A KH-type splicing regula 76.7 6.6 0.00023 31.0 6.6 40 290-335 31-74 (106)
408 3d45_A Poly(A)-specific ribonu 76.6 4 0.00014 41.6 6.7 54 120-190 441-494 (507)
409 3d45_A Poly(A)-specific ribonu 75.6 6.9 0.00024 39.8 8.1 55 275-336 440-494 (507)
410 1wfx_A Probable RNA 2'-phospho 74.8 6.8 0.00023 34.4 6.8 52 53-107 27-80 (186)
411 2pk2_A Cyclin-T1, protein TAT; 70.3 0.9 3.1E-05 44.2 0.0 16 285-300 227-242 (358)
412 4a4j_A Pacszia, cation-transpo 56.7 31 0.0011 23.5 6.3 56 276-335 4-59 (69)
413 3j21_T 50S ribosomal protein L 51.8 29 0.00098 26.3 5.5 56 276-335 25-83 (86)
414 3fry_A Probable copper-exporti 48.4 65 0.0022 22.3 6.9 55 276-335 7-61 (73)
415 2l6f_A Focal adhesion kinase 1 41.2 8.1 0.00028 34.2 0.0 11 392-402 192-202 (215)
416 2xmw_A PACS-N, cation-transpor 33.9 85 0.0029 20.7 5.5 56 276-335 5-63 (71)
417 1vq8_S 50S ribosomal protein L 33.5 50 0.0017 24.9 4.2 48 283-333 29-80 (85)
418 3lpe_A Putative transcription 33.4 1.1E+02 0.0038 23.0 6.3 34 149-191 39-72 (92)
419 2av5_A Ribonuclease P protein 32.2 65 0.0022 25.6 5.1 59 290-352 40-100 (120)
420 3dxs_X Copper-transporting ATP 31.4 1.2E+02 0.0042 20.5 6.8 56 276-335 4-63 (74)
421 4a17_R RPL23A, 60S ribosomal p 31.4 78 0.0027 26.5 5.4 56 275-335 88-147 (150)
422 3u5e_X 60S ribosomal protein L 31.3 81 0.0028 26.2 5.5 56 275-335 80-139 (142)
423 2kt2_A Mercuric reductase; nme 30.3 1.2E+02 0.004 20.0 7.2 55 277-335 3-57 (69)
424 4hhu_A OR280; engineered prote 27.8 1E+02 0.0036 24.6 5.3 74 276-352 43-129 (170)
425 2czv_C Ribonuclease P protein 25.6 81 0.0028 25.1 4.5 59 290-352 40-100 (120)
426 3p8c_D Wiskott-aldrich syndrom 25.3 43 0.0015 31.1 3.1 12 289-300 118-129 (279)
427 3p8c_D Wiskott-aldrich syndrom 24.8 44 0.0015 31.0 3.1 13 392-404 193-205 (279)
428 3h7h_B Transcription elongatio 24.2 77 0.0026 24.8 4.0 33 149-190 40-72 (106)
429 4e8u_A Putative uncharacterize 22.9 1.2E+02 0.004 26.0 5.2 50 120-180 13-73 (172)
430 3iz5_X 60S ribosomal protein L 22.8 86 0.003 26.3 4.2 56 275-335 90-149 (152)
431 1yg0_A COP associated protein; 21.7 1.7E+02 0.0056 18.7 5.4 45 277-325 4-48 (66)
432 2zkr_s 60S ribosomal protein L 21.5 1.5E+02 0.0053 24.9 5.5 55 276-335 95-153 (156)
433 2l6f_A Focal adhesion kinase 1 26.4 21 0.0007 31.6 0.0 21 385-405 182-202 (215)
No 1
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=100.00 E-value=2.4e-45 Score=335.07 Aligned_cols=192 Identities=47% Similarity=0.807 Sum_probs=167.3
Q ss_pred CCCCCccchhHHHHHHHHHHHHHhCCCCCCCChhHHhhhccCCCeEehHHHHhhHHHHhccCcHHHHHHHHhhcCCceEE
Q psy5142 11 GNSGAEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDALKKSTSKLIE 90 (410)
Q Consensus 11 ~~~~~~~~~~~~~~~i~~QlEfYfsd~Nl~~D~fl~~~~~~~~g~v~l~~l~~F~r~k~l~~d~~~i~~Al~~~~S~~le 90 (410)
|.+|...+++++..+|++||||||||+||++|+||+++|..++|||||++|++|+||+.|+.|.+.|+.||+.|....|+
T Consensus 1 ~~~~~~~~~~~~~~~i~~q~e~yfs~~nl~~D~fl~~~~~~~~g~V~l~~i~sF~r~k~l~~d~~~I~~Al~~S~~~~le 80 (193)
T 2voo_A 1 GSNGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELME 80 (193)
T ss_dssp --------CHHHHHHHHHHHHHHTSTTTGGGCHHHHHHHHHTTTCEEHHHHTTSHHHHHHCCCHHHHHHHHHTCSSCCEE
T ss_pred CCCCCcCCcHHHHHHHHHHhheecchhhcccCHHHHHHhcccCCcEEeHHHhhhhHHHHhcCCHHHHHHHHhhcccceEE
Confidence 45666788999999999999999999999999999999997689999999999999999999999999999944339999
Q ss_pred EecCccceecCCCCCCCCCchhhhhhccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCccccccccccc
Q psy5142 91 VNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKG 170 (410)
Q Consensus 91 vsed~~~vrR~~~~p~p~~~~~~~~~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG 170 (410)
|++++.+|||.+..|+|+.+++.+.+...++|||+|||+++|+++|+++|++| |.|.+|+|+++..+ .++|
T Consensus 81 v~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~----G~v~~v~i~~~~~~-----~~kG 151 (193)
T 2voo_A 81 ISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDK----GQVLNIQMRRTLHK-----AFKG 151 (193)
T ss_dssp ECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTS----CCEEEEEEEECTTC-----CEEE
T ss_pred EecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcC----CCEEEEEEEECCCC-----Cccc
Confidence 99999999999878899887777778889999999999999999999999999 99999999998765 8999
Q ss_pred EEEEEecCHHHHHHHHHhcCCCCccccccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHH
Q psy5142 171 SIFVTFDNKENAEKFLNENKDKNLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKK 240 (410)
Q Consensus 171 ~afVeF~~~e~A~~Al~~~~g~~~~~~~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~ 240 (410)
||||+|.+.++|++|++..+ ..+ .| +.|.|.|+.+|.++|+
T Consensus 152 ~aFVeF~~~e~A~~A~~~~~---~~~-----------------------~G---r~l~V~~~~~y~~~K~ 192 (193)
T 2voo_A 152 SIFVVFDSIESAKKFVETPG---QKY-----------------------KE---TDLLILFKDDYFAKKN 192 (193)
T ss_dssp EEEEEESSHHHHHHHHHCTT---CEE-----------------------TT---EECEEEETTTC-----
T ss_pred EEEEEECCHHHHHHHHHhCC---CeE-----------------------CC---EEEEEEEhHHHHHHhc
Confidence 99999999999999998876 567 88 9999999999987653
No 2
>2cqk_A C-MPL binding protein; LA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.46
Probab=99.96 E-value=7.5e-31 Score=210.86 Aligned_cols=95 Identities=24% Similarity=0.512 Sum_probs=86.8
Q ss_pred CCCCCccchhHHHHHHHHHHHHHhCCCCCCCChhHHhhhccCCCeEehHHHHhhHHHHhccCcHHHHHHHHhhcCCceEE
Q psy5142 11 GNSGAEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDALKKSTSKLIE 90 (410)
Q Consensus 11 ~~~~~~~~~~~~~~~i~~QlEfYfsd~Nl~~D~fl~~~~~~~~g~v~l~~l~~F~r~k~l~~d~~~i~~Al~~~~S~~le 90 (410)
|-+..+...+++.++|++||||||||+||++|+||+++|.. +|||||++|++|+|||+|+.|++.|++||+ .|..|+
T Consensus 3 ~~~~~~~~~~~l~~~I~~QvEyYFSd~NL~~D~fL~~~md~-~G~Vpl~~iasF~r~k~lt~d~~~i~~al~--~S~~le 79 (101)
T 2cqk_A 3 SGSSGAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDS-DQFIPIWTVANMEEIKKLTTDPDLILEVLR--SSPMVQ 79 (101)
T ss_dssp SSSCCSCCHHHHHHHHHHHHHHHTSHHHHHHCHHHHHHSCT-TSCEEHHHHHHCHHHHHHCCCHHHHHHHHH--HSSSEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHhhcchhhhccCHHHHHhhhc-CCCEEhHHHhCChHHHHHcCCHHHHHHHHH--hCCcEE
Confidence 34445567899999999999999999999999999999964 599999999999999999999999999999 788999
Q ss_pred EecCccceecCCCCCCCC
Q psy5142 91 VNEDGTKIRRNPEKELPT 108 (410)
Q Consensus 91 vsed~~~vrR~~~~p~p~ 108 (410)
|++|+++|||+.+.|+|+
T Consensus 80 vsedg~kVRr~~~~~i~~ 97 (101)
T 2cqk_A 80 VDEKGEKVRPSHKRCISG 97 (101)
T ss_dssp ECSSSSEEEECCSCCCCS
T ss_pred EcCCCCeeeeCCCCCcCC
Confidence 999999999998777775
No 3
>1s29_A LA protein; winged helix-turn-helix, autoantigen, RNA-binding, RNA binding protein; 1.60A {Trypanosoma brucei} SCOP: a.4.5.46
Probab=99.96 E-value=1.2e-30 Score=206.98 Aligned_cols=85 Identities=39% Similarity=0.764 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCCChhHHhhhccC-CCeEehHHHHhhHHHHhccCcHHHHHHHHhhcCCceEEEecCccc
Q psy5142 19 VSKLENQIIEQIEYYFSDINLARDKFLQGEIKKD-DGWVELTTMLKFARLAKMTTEAKVIVDALKKSTSKLIEVNEDGTK 97 (410)
Q Consensus 19 ~~~~~~~i~~QlEfYfsd~Nl~~D~fl~~~~~~~-~g~v~l~~l~~F~r~k~l~~d~~~i~~Al~~~~S~~levsed~~~ 97 (410)
.+++..+|++||||||||+||++|+||+++|.++ +|||||++|++|+|||+|++|.+.|++||+ .|..|+|++||++
T Consensus 7 ~~~~~~~I~~QvEyYFSd~NL~~D~fL~~~m~~~~~G~Vpl~~i~sF~r~k~lt~d~~~i~~al~--~S~~lev~edg~~ 84 (92)
T 1s29_A 7 SSENKQKLQKQVEFYFSDVNVQRDIFLKGKMAENAEGFVSLETLLTFKRVNSVTTDVKEVVEAIR--PSEKLVLSEDGLM 84 (92)
T ss_dssp CHHHHHHHHHHHHHHTSHHHHTTCHHHHHHHTTSTTCCEEHHHHTTSHHHHTTCSCHHHHHHHHT--TCSSEEECTTSSE
T ss_pred CHHHHHHHHHHHHhhcchhhhccCHHHHHHhccCCCCCEEhHHHhCChhHHHHcCCHHHHHHHHh--hCCeEEEeCCCCE
Confidence 4788999999999999999999999999999874 799999999999999999999999999999 8899999999999
Q ss_pred eecCCCCCCC
Q psy5142 98 IRRNPEKELP 107 (410)
Q Consensus 98 vrR~~~~p~p 107 (410)
|||+ .|+|
T Consensus 85 VRR~--~PlP 92 (92)
T 1s29_A 85 VRRR--DPLP 92 (92)
T ss_dssp EEES--SCCC
T ss_pred EeCC--CCCC
Confidence 9999 4666
No 4
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.94 E-value=2.4e-26 Score=211.90 Aligned_cols=167 Identities=18% Similarity=0.242 Sum_probs=138.3
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFN 197 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~ 197 (410)
..+||||+|||+++|+++|+++|++| |+|.+|+|+++..++ .++|||||+|.+.++|++|++.+++ ..+
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~----G~I~~v~i~~d~~tg----~~~G~afV~F~~~~~A~~Ai~~~~~--~~~- 82 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPA----GPILSIRVCRDMITR----RSLGYAYVNFQQPADAERALDTMNF--DVI- 82 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTC----CEEEEEEEEESSHHHHHHHHHHHTT--CEE-
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhh----CCEEEEEEecccCCC----CccccccceeCCHHHHHHHHHHhhh--hhc-
Confidence 45899999999999999999999999 999999999988765 8999999999999999999999885 334
Q ss_pred ccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCCeE
Q psy5142 198 ENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGAL 277 (410)
Q Consensus 198 ~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g~~ 277 (410)
.| +.|.+.+...... ........
T Consensus 83 ----------------------~g---~~i~~~~~~~~~~--------------------------------~~~~~~~~ 105 (213)
T 4f02_A 83 ----------------------KG---KPVRIMWSQRDPS--------------------------------LRKSGVGN 105 (213)
T ss_dssp ----------------------TT---EECEEEECCCCTH--------------------------------HHHHCTTE
T ss_pred ----------------------CC---ccccccccccccc--------------------------------cccccccc
Confidence 55 6666554211000 00112347
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC----ceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEecC
Q psy5142 278 LKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE----PTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVT 353 (410)
Q Consensus 278 l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~----~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l~ 353 (410)
|+|.|||+.+++++|+++|++|| .|..|.+..+. ++|||+|.+.++|++|++.| ++..|+|+.|.|....
T Consensus 106 l~v~nl~~~~t~~~l~~~F~~~G----~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~l--ng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 106 IFIKNLDKSIDNKALYDTFSAFG----NILSCKVVCDENGSKGYGFVHFETQEAAERAIEKM--NGMLLNDRKVFVGRFK 179 (213)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGS----CEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEEECC
T ss_pred ceECCcccccHHHHHHHHHhhcC----CeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHh--CCCEECCEEEEEEEcC
Confidence 99999999999999999999999 99999887543 46999999999999999999 6799999999999987
Q ss_pred chHHH
Q psy5142 354 GEEEQ 358 (410)
Q Consensus 354 g~eE~ 358 (410)
...++
T Consensus 180 ~~~~~ 184 (213)
T 4f02_A 180 SRKER 184 (213)
T ss_dssp CHHHH
T ss_pred CCccc
Confidence 65443
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.4e-26 Score=199.81 Aligned_cols=159 Identities=16% Similarity=0.234 Sum_probs=135.8
Q ss_pred eeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcccccc
Q psy5142 120 QSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFNEN 199 (410)
Q Consensus 120 rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~~~ 199 (410)
|||||+|||.++|+++|+++|++| |.|.+|.++++..+ .++|+|||+|.+.++|.+|+..++| ..+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~~--~~~--- 66 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVG----GPIANIKIMIDKNN-----KNVNYAFVEYHQSHDANIALQTLNG--KQI--- 66 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGG----SCEEEEEEECCCC------CCEEEEEEEESSHHHHHHHHHHHTT--CEE---
T ss_pred CEEEECCCCCcCCHHHHHHHHHhc----CCeEEEEEEECCCC-----CCCCEEEEEeCCHHHHHHHHHHcCC--Ccc---
Confidence 699999999999999999999999 99999999988776 7899999999999999999988886 455
Q ss_pred ccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCCeEEE
Q psy5142 200 CEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGALLK 279 (410)
Q Consensus 200 ~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g~~l~ 279 (410)
.| +.|.+.+... .......+.+.|+
T Consensus 67 --------------------~g---~~i~v~~~~~--------------------------------~~~~~~~~~~~l~ 91 (166)
T 3md3_A 67 --------------------EN---NIVKINWAFQ--------------------------------SQQSSSDDTFNLF 91 (166)
T ss_dssp --------------------TT---EECEEEECCC--------------------------------CCCCCCTTCEEEE
T ss_pred --------------------CC---CeeEEEEcCC--------------------------------CCCCCCCCCceEE
Confidence 56 7777764210 0112345678999
Q ss_pred EeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEecC
Q psy5142 280 ISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVT 353 (410)
Q Consensus 280 v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l~ 353 (410)
|.|||..+++++|+++|++|| .|..|.+..+ .+.|||+|.+.++|.+|+..| ++..++|+.|.|....
T Consensus 92 v~nl~~~~t~~~l~~~f~~~G----~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 92 VGDLNVNVDDETLRNAFKDFP----SYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM--QGQDLNGRPLRINWAA 165 (166)
T ss_dssp EESCCTTCCHHHHHHHHTTST----TEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHH--TTCEETTEECEEEESC
T ss_pred ECCCCCCCCHHHHHHHHhccC----CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh--CCCccCCcEEEEEecC
Confidence 999999999999999999999 9999988754 236999999999999999999 6789999999998754
No 6
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.93 E-value=8.1e-26 Score=204.16 Aligned_cols=166 Identities=16% Similarity=0.219 Sum_probs=134.7
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| |.|.+|.|+++..++ .++|||||+|.+.++|.+|++..+ ..+
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~~~g----~~~g~afV~f~~~~~A~~A~~~~~---~~~ 79 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQW----GTLTDCVVMRDPNTK----RSRGFGFVTYATVEEVDAAMNARP---HKV 79 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTC----CEEEEEEEEESSHHHHHHHHHTCS---CEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEEEcCCCC----CccceEEEEeCCHHHHHHHHhcCC---CEE
Confidence 457899999999999999999999999 999999999987765 789999999999999999998843 556
Q ss_pred cccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCCe
Q psy5142 197 NENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGA 276 (410)
Q Consensus 197 ~~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g~ 276 (410)
.| +.|.+.+...... ..........+
T Consensus 80 -----------------------~g---~~l~v~~~~~~~~----------------------------~~~~~~~~~~~ 105 (196)
T 1l3k_A 80 -----------------------DG---RVVEPKRAVSRED----------------------------SQRPGAHLTVK 105 (196)
T ss_dssp -----------------------TT---EECEEEECCC---------------------------------------CCS
T ss_pred -----------------------CC---EEeeeecccCccc----------------------------ccccccCCCcc
Confidence 66 7777765211100 00011223457
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEE
Q psy5142 277 LLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE------PTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIE 350 (410)
Q Consensus 277 ~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~ 350 (410)
.|+|.|||+.+++++|+++|++|| .|..|.+..+. ++|||+|.+.++|.+|+.. ++..++|+.|.|.
T Consensus 106 ~l~V~nLp~~~t~~~l~~~F~~~G----~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~---~~~~~~G~~i~v~ 178 (196)
T 1l3k_A 106 KIFVGGIKEDTEEHHLRDYFEQYG----KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ---KYHTVNGHNCEVR 178 (196)
T ss_dssp EEEEECCTTTCCHHHHHHHHTTTS----CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC---SCCEETTEECEEE
T ss_pred eEEEeCCCCCCCHHHHHHHHhcCC----CeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh---CCcEECCEEEEEE
Confidence 899999999999999999999999 99999988653 3699999999999999976 3689999999999
Q ss_pred ecCc
Q psy5142 351 VVTG 354 (410)
Q Consensus 351 ~l~g 354 (410)
.+..
T Consensus 179 ~a~~ 182 (196)
T 1l3k_A 179 KALS 182 (196)
T ss_dssp ECC-
T ss_pred ecCC
Confidence 8763
No 7
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.93 E-value=1.8e-25 Score=196.69 Aligned_cols=157 Identities=18% Similarity=0.291 Sum_probs=134.4
Q ss_pred ceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccccc
Q psy5142 119 AQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFNE 198 (410)
Q Consensus 119 ~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~~ 198 (410)
.++|||+|||.++|+++|+++|++| |.|.+|.++++..++ .++|+|||+|.+.++|++|++.++| ..+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~----G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~A~~a~~~l~~--~~~-- 70 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAI----GPINTCRIMRDYKTG----YSYGYAFVDFTSEMDSQRAIKVLNG--ITV-- 70 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTT----SCEEEEECCEETTTT----EECSEEEEEESSHHHHHHHHHHHTT--CEE--
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEEEeCCCC----ccceEEEEEECCHHHHHHHHHhcCC--CEe--
Confidence 5899999999999999999999999 999999999887664 7899999999999999999998886 455
Q ss_pred cccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCCeEE
Q psy5142 199 NCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGALL 278 (410)
Q Consensus 199 ~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g~~l 278 (410)
.| +.|.+.+.. ......+.+.|
T Consensus 71 ---------------------~g---~~l~v~~~~----------------------------------~~~~~~~~~~l 92 (168)
T 1b7f_A 71 ---------------------RN---KRLKVSYAR----------------------------------PGGESIKDTNL 92 (168)
T ss_dssp ---------------------TT---EECEEEECC----------------------------------CCSSTTTTCEE
T ss_pred ---------------------CC---cEEEEEecC----------------------------------CCcccCCCCCE
Confidence 66 777776421 01122456789
Q ss_pred EEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCeEEcC--eEEEEE
Q psy5142 279 KISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE------PTAFVRYKKENNAEAVLKALGSKEIVIKD--VKVSIE 350 (410)
Q Consensus 279 ~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~~i~g--~~v~v~ 350 (410)
+|.|||..+++++|+++|++|| .|..|.+.++. +.|||+|.+.++|.+|+..| ++..++| +.|+|.
T Consensus 93 ~v~nl~~~~t~~~l~~~f~~~G----~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 93 YVTNLPRTITDDQLDTIFGKYG----SIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL--NNVIPEGGSQPLSVR 166 (168)
T ss_dssp EEESCCTTCCHHHHHHHHTSSS----CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH--TTCCCTTCSSCCEEE
T ss_pred EEeCCCCCCCHHHHHHhhhcCC----cEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHh--cCCEecCCCeEEEEE
Confidence 9999999999999999999999 99999988754 46999999999999999999 5677876 888887
Q ss_pred e
Q psy5142 351 V 351 (410)
Q Consensus 351 ~ 351 (410)
.
T Consensus 167 ~ 167 (168)
T 1b7f_A 167 L 167 (168)
T ss_dssp E
T ss_pred e
Confidence 5
No 8
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.93 E-value=2.8e-25 Score=194.87 Aligned_cols=156 Identities=17% Similarity=0.312 Sum_probs=132.0
Q ss_pred ceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccccc
Q psy5142 119 AQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFNE 198 (410)
Q Consensus 119 ~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~~ 198 (410)
.++|||+|||.++|+++|+++|++| |.|.+|.++++..++ .++|+|||+|.++++|.+|++.++| ..+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~----G~i~~v~~~~~~~~~----~~~g~afV~f~~~~~A~~a~~~l~~--~~~-- 69 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSI----GEIESCKLVRDKITG----QSLGYGFVNYIDPKDAEKAINTLNG--LRL-- 69 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEEECTTTC----CEEEEEEEEESSHHHHHHHHHHHTT--CEE--
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhc----CCeEEEEEEeCCCCC----cceeEEEEEECCHHHHHHHHHHcCC--Ccc--
Confidence 5899999999999999999999999 999999999987554 7899999999999999999998886 455
Q ss_pred cccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCCeEE
Q psy5142 199 NCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGALL 278 (410)
Q Consensus 199 ~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g~~l 278 (410)
.| +.|.+.+... .......+.|
T Consensus 70 ---------------------~g---~~l~v~~~~~----------------------------------~~~~~~~~~l 91 (167)
T 1fxl_A 70 ---------------------QT---KTIKVSYARP----------------------------------SSASIRDANL 91 (167)
T ss_dssp ---------------------TT---EECEEEECCC----------------------------------CCGGGTTCEE
T ss_pred ---------------------CC---ceEEEEecCC----------------------------------CcccCCCCcE
Confidence 66 7777764210 0112345689
Q ss_pred EEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCeEEcCeE--EEEE
Q psy5142 279 KISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE------PTAFVRYKKENNAEAVLKALGSKEIVIKDVK--VSIE 350 (410)
Q Consensus 279 ~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~--v~v~ 350 (410)
+|.|||..+++++|+++|++|| .|..|.+..+. +.|||+|.+.++|.+|+..| ++..++|+. |.|.
T Consensus 92 ~v~nl~~~~t~~~l~~~f~~~G----~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 92 YVSGLPKTMTQKELEQLFSQYG----RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL--NGQKPSGATEPITVK 165 (167)
T ss_dssp EEESCCTTCCHHHHHHHHGGGS----CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH--TTCCCTTCSSCCEEE
T ss_pred EECCCCCcCCHHHHHHHHHhcC----CEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHh--cCCccCCCccceEEE
Confidence 9999999999999999999999 99999887653 46999999999999999999 667888865 5554
No 9
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.93 E-value=3.9e-25 Score=202.67 Aligned_cols=173 Identities=16% Similarity=0.209 Sum_probs=136.6
Q ss_pred hccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcc
Q psy5142 116 DLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLK 195 (410)
Q Consensus 116 ~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~ 195 (410)
....++|||+|||.++|+++|+++|++| |.|.+|.|+++..++ .++|||||+|.+.++|.+|++.+++ ..
T Consensus 25 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~g----~~~g~afV~f~~~~~A~~A~~~l~~--~~ 94 (216)
T 2qfj_A 25 LAIMSRVYVGSIYYELGEDTIRQAFAPF----GPIKSIDMSWDSVTM----KHKGFAFVEYEVPEAAQLALEQMNS--VM 94 (216)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHGGG----SCEEEEEECCC-CC-----CCCSEEEEEESSHHHHHHHHHHHSS--CC
T ss_pred cCcCCEEEEECCCCCCCHHHHHHHHHhC----CCEEEEEEeecCCCC----ccCceEEEEeCCHHHHHHHHHHccC--Ce
Confidence 3557899999999999999999999999 999999999887654 7899999999999999999998886 44
Q ss_pred ccccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCC
Q psy5142 196 FNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTG 275 (410)
Q Consensus 196 ~~~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g 275 (410)
+ .| +.|.|.+...+......... ........
T Consensus 95 ~-----------------------~g---~~l~v~~~~~~~~~~~~~~~-----------------------~~~~~~~~ 125 (216)
T 2qfj_A 95 L-----------------------GG---RNIKVGRPSNIGQAQPIIDQ-----------------------LAEEARAF 125 (216)
T ss_dssp C-----------------------C----CCCEEECCSCCGGGHHHHHH-----------------------HHHHHTTS
T ss_pred e-----------------------CC---eeEEEecCCCccccchhhhh-----------------------hhcccCCC
Confidence 5 55 66666432111000000000 00012345
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEE
Q psy5142 276 ALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSI 349 (410)
Q Consensus 276 ~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v 349 (410)
++|+|.|||.++++++|+++|++|| .|..|.+..+ .++|||+|.+.++|.+|+..| ++..|+|+.|.|
T Consensus 126 ~~l~v~nlp~~~t~~~l~~~f~~~G----~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l--~g~~~~g~~i~V 199 (216)
T 2qfj_A 126 NRIYVASVHQDLSDDDIKSVFEAFG----KIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM--NLFDLGGQYLRV 199 (216)
T ss_dssp CEEEEECCCTTCCHHHHHHHHTTSS----CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH--TTCBCSSSBCEE
T ss_pred cEEEEeCCCCcCCHHHHHHHHhccC----CeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHc--cCCEeCCcEEEE
Confidence 6899999999999999999999999 9999999865 346999999999999999999 678899999999
Q ss_pred EecC
Q psy5142 350 EVVT 353 (410)
Q Consensus 350 ~~l~ 353 (410)
....
T Consensus 200 ~~a~ 203 (216)
T 2qfj_A 200 GKAV 203 (216)
T ss_dssp EECS
T ss_pred EEec
Confidence 8765
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.93 E-value=1.3e-24 Score=192.30 Aligned_cols=165 Identities=19% Similarity=0.233 Sum_probs=129.0
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFN 197 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~ 197 (410)
+.++|||+|||+++|+++|+++|++| |.|.+|+|+++..++ ...++|||||+|.+.++|++|++.+++ ..+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~~--~~~- 72 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQY----GAVYEINVLRDRSQN--PPQSKGCCFVTFYTRKAALEAQNALHN--MKV- 72 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEEEECSSS--SCEEEEEEEEEESSHHHHHHHHHHHTT--TCC-
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEEecCCCC--CCCcceEEEEEECCHHHHHHHHHHhcC--cEE-
Confidence 46899999999999999999999999 999999999887652 014799999999999999999999886 333
Q ss_pred ccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCCeE
Q psy5142 198 ENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGAL 277 (410)
Q Consensus 198 ~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g~~ 277 (410)
.+...+.+.+.+.. .........+.
T Consensus 73 ----------------------~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~ 97 (175)
T 3nmr_A 73 ----------------------LPGMHHPIQMKPAD---------------------------------SEKNNAVEDRK 97 (175)
T ss_dssp ----------------------CTTCSSCCEEEECG---------------------------------GGCCSCGGGSE
T ss_pred ----------------------ccCCccceEEcccc---------------------------------ccccccCCCCe
Confidence 11011333333210 00111234568
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC-----CceEEEEeCChhHHHHHHHHhcCCCeEEc---CeEEEE
Q psy5142 278 LKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG-----EPTAFVRYKKENNAEAVLKALGSKEIVIK---DVKVSI 349 (410)
Q Consensus 278 l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g-----~~~afV~F~~~e~A~~Al~~l~~~~~~i~---g~~v~v 349 (410)
|+|.|||+.+++++|+++|++|| .|..|.+.++ .++|||+|.+.++|.+|+..|+ +..+. ++.|.|
T Consensus 98 l~v~nl~~~~t~~~l~~~F~~~G----~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~--g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 98 LFIGMISKKCTENDIRVMFSSFG----QIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMH--QAQTMEGCSSPMVV 171 (175)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGS----CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT--TSCCCTTCSSCCEE
T ss_pred EEEcCCCCcCCHHHHHHHHHhCC----CEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhc--CCcccCCCCCCeEE
Confidence 99999999999999999999999 9999998875 3369999999999999999994 44343 488888
Q ss_pred Eec
Q psy5142 350 EVV 352 (410)
Q Consensus 350 ~~l 352 (410)
..+
T Consensus 172 ~~a 174 (175)
T 3nmr_A 172 KFA 174 (175)
T ss_dssp EEC
T ss_pred Eec
Confidence 764
No 11
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.92 E-value=3.4e-25 Score=194.93 Aligned_cols=158 Identities=16% Similarity=0.241 Sum_probs=132.7
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFN 197 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~ 197 (410)
+.++|||+|||+++|+++|+++|++| |.|.+|.|+++..++ .++|||||+|.+.++|++|+... ..+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g----~~~g~afV~f~~~~~a~~A~~~~----~~~- 68 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKY----GTVTDLKIMKDPATG----RSRGFGFLSFEKPSSVDEVVKTQ----HIL- 68 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTT----CCEEEEECCCCTTTS----SCCSCEEEEESSTHHHHHHHHSC----CEE-
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEEECCCCC----CccceEEEEEccHHHHHHHHhcc----ccc-
Confidence 36899999999999999999999999 999999999987665 89999999999999999999863 245
Q ss_pred ccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCCeE
Q psy5142 198 ENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGAL 277 (410)
Q Consensus 198 ~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g~~ 277 (410)
.| +.|.+.+..... ...+...
T Consensus 69 ----------------------~g---~~i~v~~~~~~~----------------------------------~~~~~~~ 89 (167)
T 2cjk_A 69 ----------------------DG---KVIDPKRAIPRD----------------------------------EQDKTGK 89 (167)
T ss_dssp ----------------------TT---EECCCEECCCHH----------------------------------HHHHCEE
T ss_pred ----------------------CC---eEcccccccchh----------------------------------hccCCCe
Confidence 55 666655421100 0122458
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEe
Q psy5142 278 LKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE------PTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEV 351 (410)
Q Consensus 278 l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~ 351 (410)
|+|.|||+.+++++|+++|++|| .|..|.+..+. ++|||+|.+.++|.+|++ + ++..++|+.|.|..
T Consensus 90 l~V~nlp~~~t~~~l~~~F~~~G----~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~--~~~~~~g~~i~V~~ 162 (167)
T 2cjk_A 90 IFVGGIGPDVRPKEFEEFFSQWG----TIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-N--KFIDFKDRKIEIKR 162 (167)
T ss_dssp EEEEEECTTCCHHHHHHHHHTTS----CCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-C--SEECSSSSCEEEEE
T ss_pred EEECCCCCCCCHHHHHHHHHhCc----cEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-C--CCEEeCCeEEEEee
Confidence 99999999999999999999999 99999987653 479999999999999998 6 68999999999998
Q ss_pred cCc
Q psy5142 352 VTG 354 (410)
Q Consensus 352 l~g 354 (410)
...
T Consensus 163 a~p 165 (167)
T 2cjk_A 163 AEP 165 (167)
T ss_dssp CCC
T ss_pred cCC
Confidence 754
No 12
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.91 E-value=1e-23 Score=186.33 Aligned_cols=152 Identities=20% Similarity=0.340 Sum_probs=126.3
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCC-----------ceEEEEEcccCcccccccccccEEEEEecCHHHHHHHH
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDV-----------KITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFL 186 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G-----------~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al 186 (410)
+.++|||+|||+++|+++|+++|++| | .|.++.+. ..+|+|||+|.++++|.+|+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~----g~~~g~~~~~~~~v~~~~~~----------~~~g~afV~f~~~~~A~~A~ 68 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQ----MRLGGLTQAPGNPVLAVQIN----------QDKNFAFLEFRSVDETTQAM 68 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHH----HHHTTCCSSSSCSEEEEEEE----------TTTTEEEEEESSHHHHHHHG
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHH----hhhcccccCCCCceeeeEec----------CCCCEEEEEeCCHHHHHHHH
Confidence 46899999999999999999999999 7 45555543 56899999999999999999
Q ss_pred HhcCCCCccccccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCc
Q psy5142 187 NENKDKNLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSK 266 (410)
Q Consensus 187 ~~~~g~~~~~~~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~ 266 (410)
.++| ..+ .| +.|.+.+...
T Consensus 69 -~~~~--~~~-----------------------~g---~~i~v~~~~~-------------------------------- 87 (172)
T 2g4b_A 69 -AFDG--IIF-----------------------QG---QSLKIRRPHD-------------------------------- 87 (172)
T ss_dssp -GGTT--CEE-----------------------TT---EECEEECCSS--------------------------------
T ss_pred -HhCC--cEe-----------------------cC---ceeeecCCcc--------------------------------
Confidence 6775 455 66 7777764211
Q ss_pred ccccCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCe
Q psy5142 267 QVVLELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE------PTAFVRYKKENNAEAVLKALGSKEI 340 (410)
Q Consensus 267 ~~~~~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~ 340 (410)
.......+.|+|.|||..+++++|+++|++|| .|..|.+.++. +.|||+|.+.++|.+|+..| ++.
T Consensus 88 --~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G----~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l--~g~ 159 (172)
T 2g4b_A 88 --YQPLPGAHKLFIGGLPNYLNDDQVKELLTSFG----PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL--NGM 159 (172)
T ss_dssp --CCCCTTTTCEEEECCCTTCCHHHHHHHHHTTS----CEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHH--TTC
T ss_pred --cCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcC----CceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHc--CCC
Confidence 01123356899999999999999999999999 99999988763 46999999999999999999 679
Q ss_pred EEcCeEEEEEec
Q psy5142 341 VIKDVKVSIEVV 352 (410)
Q Consensus 341 ~i~g~~v~v~~l 352 (410)
.++|+.|.|..+
T Consensus 160 ~~~g~~l~V~~A 171 (172)
T 2g4b_A 160 QLGDKKLLVQRA 171 (172)
T ss_dssp EETTEECEEEEC
T ss_pred EECCeEEEEEeC
Confidence 999999999865
No 13
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.91 E-value=2.2e-24 Score=180.19 Aligned_cols=104 Identities=26% Similarity=0.372 Sum_probs=99.8
Q ss_pred ccCCCCCeEEEEeCCCCC-CCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCC-hhHHHHHHHHhcCCCeEEcCeE
Q psy5142 269 VLELPTGALLKISDIKEP-VSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKK-ENNAEAVLKALGSKEIVIKDVK 346 (410)
Q Consensus 269 ~~~~~~g~~l~v~nL~~~-~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~-~e~A~~Al~~l~~~~~~i~g~~ 346 (410)
+..+++||+|+|.||+++ +++++|+++|++|| +|.||++.+|..+|||+|.+ +.+|..|+..+++++++|+|..
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G----~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHG----EIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSC----CEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcC----CEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 457899999999999999 99999999999999 99999999999999999999 7899999999999999999999
Q ss_pred EEEEecCchHHHHHHHHhHHHHHHHHHhhhh
Q psy5142 347 VSIEVVTGEEEQTVLDRMKIDIFKRRQKLMN 377 (410)
Q Consensus 347 v~v~~l~g~eE~~yw~k~~~~~~~~~~~~~~ 377 (410)
+++++|+|++|+.||+||.+++++++++ ++
T Consensus 88 ~~~evL~GeeE~~yw~Ki~ed~~~k~~k-~~ 117 (121)
T 1owx_A 88 VTWEVLEGEVEKEALKKIIEDQQESLNK-WK 117 (121)
T ss_dssp EEEEECCHHHHHHHHHHHHHHHHHHHCC-CC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHhC-cc
Confidence 9999999999999999999999999988 55
No 14
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.91 E-value=2.8e-23 Score=198.96 Aligned_cols=167 Identities=13% Similarity=0.203 Sum_probs=141.9
Q ss_pred ceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccccc
Q psy5142 119 AQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFNE 198 (410)
Q Consensus 119 ~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~~ 198 (410)
.++|||+|||+++|+++|+++|++| |.|..|.++++..++ .++|+|||+|.+.++|.+|+..++| ..+
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~g----~~~g~afV~f~~~~~a~~A~~~l~~--~~~-- 162 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPF----GSLERCFLVYSERTG----QSKGYGFAEYMKKDSAARAKSDLLG--KPL-- 162 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTC----CEEEEEEEEESSHHHHHHHHHHHTT--CEE--
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhc----CCeeEEEEEeeCCCC----ccceEEEEEECCHHHHHHHHHHhCC--CEe--
Confidence 4799999999999999999999999 999999999887665 7899999999999999999998886 455
Q ss_pred cccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCCeEE
Q psy5142 199 NCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGALL 278 (410)
Q Consensus 199 ~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g~~l 278 (410)
.| +.|.|.+...- .........++|
T Consensus 163 ---------------------~g---~~i~v~~a~~~-------------------------------~~~~~~~~~~~l 187 (284)
T 3smz_A 163 ---------------------GP---RTLYVHWTDAG-------------------------------QLTPALLHSRCL 187 (284)
T ss_dssp ---------------------TT---EECEEEECCGG-------------------------------GCCTTTTSCSEE
T ss_pred ---------------------CC---cEEEEEECCCC-------------------------------CCCcccCCccEE
Confidence 66 78877653110 011123456789
Q ss_pred EEeCCCCCC-CHHHHHHHHHhcCCCCCCeeEEEeeCC-----CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEec
Q psy5142 279 KISDIKEPV-SREDIREVLEKVQTDDQEIVFIEFNVG-----EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVV 352 (410)
Q Consensus 279 ~v~nL~~~~-t~edLk~~F~~~G~~~~~V~~V~~~~g-----~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l 352 (410)
+|.|||+.+ ++++|+++|++|| .|..|.+.++ .+.|||+|.+.++|.+|+..| ++..++|+.|.|...
T Consensus 188 ~v~nlp~~~~~~~~l~~~f~~~G----~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v~~a 261 (284)
T 3smz_A 188 CVDRLPPGFNDVDALCRALSAVH----SPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQA--DGLSLGGSHLRVSFC 261 (284)
T ss_dssp EEECCCTTCCCHHHHHHHTCSSS----CCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHH--TTCEETTEECEEEEC
T ss_pred EEecCCcccCCHHHHHHHhhCCC----CeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHh--CCCccCCeEEEEEEe
Confidence 999999995 9999999999999 9999988765 456999999999999999999 678999999999998
Q ss_pred CchHHH
Q psy5142 353 TGEEEQ 358 (410)
Q Consensus 353 ~g~eE~ 358 (410)
...++.
T Consensus 262 ~~~~~~ 267 (284)
T 3smz_A 262 APGPPG 267 (284)
T ss_dssp CSSSCH
T ss_pred cCCCcc
Confidence 876653
No 15
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.90 E-value=2.1e-23 Score=199.65 Aligned_cols=191 Identities=19% Similarity=0.334 Sum_probs=134.5
Q ss_pred ccceeeEeecCCCCCCHHHHH----HHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCC
Q psy5142 117 LIAQSLYVKYIPVDATLDDIK----DFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDK 192 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~----~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~ 192 (410)
...++|||+|||+++|+++|+ ++|++| |.|.+|+|.+ .+ .++|||||+|.+.++|.+|++.++|
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~----G~i~~v~~~~--~~-----~~~g~afV~f~~~~~a~~A~~~l~g- 74 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQF----GQILDILVSR--SL-----KMRGQAFVIFKEVSSATNALRSMQG- 74 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhcc----CCeEEEEEcC--CC-----CcceEEEEEECCHHHHHHHHHHhcC-
Confidence 457899999999999999977 899999 9999999986 22 6899999999999999999999886
Q ss_pred CccccccccchhhhhhhhcccccccccCcccccchhhhchHHHHH-----------HHH-HHHHhhh--hccccCccCCC
Q psy5142 193 NLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHE-----------EKK-QEVRSKR--DKSKKSTEGDG 258 (410)
Q Consensus 193 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~-----------~k~-~e~~~~~--~k~k~~~e~~~ 258 (410)
..+ .| +.|.|.+...... ... .+..... +..........
T Consensus 75 -~~~-----------------------~g---~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (282)
T 3pgw_A 75 -FPF-----------------------YD---KPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQG 127 (282)
T ss_pred -Cee-----------------------CC---cEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccC
Confidence 445 33 4444443211000 000 0000000 00000000000
Q ss_pred CCCC-------CC-------------------------------------C-------------------cccccCCCCC
Q psy5142 259 EGNT-------EG-------------------------------------S-------------------KQVVLELPTG 275 (410)
Q Consensus 259 ~~~~-------~~-------------------------------------~-------------------~~~~~~~~~g 275 (410)
.... .. . .......++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (282)
T 3pgw_A 128 GGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPN 207 (282)
T ss_pred cCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCC
Confidence 0000 00 0 0001123456
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC-ceEEEEeCChhHHHHHHHHhcCCCeEEc-CeEEEEEec
Q psy5142 276 ALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE-PTAFVRYKKENNAEAVLKALGSKEIVIK-DVKVSIEVV 352 (410)
Q Consensus 276 ~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~-~~afV~F~~~e~A~~Al~~l~~~~~~i~-g~~v~v~~l 352 (410)
++|+|.|||..+++++|+++|++|| .|..|.+.++. ++|||+|.+.++|.+|+..| ++..++ |+.|.|...
T Consensus 208 ~~l~v~nl~~~~~~~~l~~~F~~~G----~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 208 HILFLTNLPEETNELMLSMLFNQFP----GFKEVRLVPGRHDIAFVEFDNEVQAGAARDAL--QGFKITQNNAMKISFA 280 (282)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhcC----CeEEEEEecCCCcEEEEEeCCHHHHHHHHHHc--CCcEeCCCCEEEEEEe
Confidence 8999999999999999999999999 99999999877 78999999999999999999 678888 999999864
No 16
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.90 E-value=3.3e-23 Score=187.24 Aligned_cols=174 Identities=17% Similarity=0.288 Sum_probs=129.3
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceE-----------EEEEcccCcccccccccccEEEEEecCHHHHHHHH
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKIT-----------NIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFL 186 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~-----------~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al 186 (410)
..|+|||+|||+++|+++|+++|++| |.|. ++.+. ..+|||||+|.+.++|++|+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~----g~i~g~~~~~~~~v~~~~~~----------~~~g~afV~F~~~~~A~~Al 68 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQ----MRLGGLTQAPGNPVLAVQIN----------QDKNFAFLEFRSVDETTQAM 68 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHH----HHHHTCCSSSSCSEEEEEEE----------TTTTEEEEEESCSHHHHHHG
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHH----HhhcccccCCCCceEEeEec----------CCCCEEEEEeCCHHHHHHHH
Confidence 36899999999999999999999999 8444 33332 57999999999999999999
Q ss_pred HhcCCCCccccccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCc
Q psy5142 187 NENKDKNLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSK 266 (410)
Q Consensus 187 ~~~~g~~~~~~~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~ 266 (410)
.++| ..+ .| +.|.|.+...+.. ....... ........
T Consensus 69 -~l~g--~~~-----------------------~g---~~i~v~~~~~~~~------------~~~~~~~--~~~~~~~~ 105 (198)
T 2yh0_A 69 -AFDG--IIF-----------------------QG---QSLKIRRPHDYQP------------LPGMSEN--PSVYVPGV 105 (198)
T ss_dssp -GGTT--EEE-----------------------TT---EEEEEECCCCCCC------------CCCSSSC--SSCCCTTS
T ss_pred -HhcC--CEE-----------------------cC---ceEEEeCCCCCCC------------CCCCcCC--CcCCCCCC
Confidence 6775 455 66 7777764221100 0000000 00000000
Q ss_pred ccccCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCe
Q psy5142 267 QVVLELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEI 340 (410)
Q Consensus 267 ~~~~~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~ 340 (410)
.......+.+.|+|.|||+.+++++|+++|++|| .|..|.+..+ .++|||+|.+.++|.+|+..| ++.
T Consensus 106 ~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G----~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~ 179 (198)
T 2yh0_A 106 VSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFG----PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL--NGM 179 (198)
T ss_dssp SCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBS----CEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHH--TTC
T ss_pred ccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcC----CccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHc--CCC
Confidence 1112235678999999999999999999999999 9999998865 346999999999999999999 678
Q ss_pred EEcCeEEEEEecCc
Q psy5142 341 VIKDVKVSIEVVTG 354 (410)
Q Consensus 341 ~i~g~~v~v~~l~g 354 (410)
.++|+.|.|.....
T Consensus 180 ~~~g~~l~v~~a~~ 193 (198)
T 2yh0_A 180 QLGDKKLLVQRASV 193 (198)
T ss_dssp EETTEECEEEESCC
T ss_pred EECCEEEEEEECCC
Confidence 99999999997653
No 17
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.90 E-value=4.5e-23 Score=189.33 Aligned_cols=177 Identities=10% Similarity=0.066 Sum_probs=124.5
Q ss_pred cceeeEeecCC-CCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 118 IAQSLYVKYIP-VDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 118 ~~rtv~V~~lp-~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
..++|||+||| +++|+++|+++|++| |.|.+|+|+++ .+|||||+|.+.++|++|++.++| ..+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~----G~v~~v~i~~~---------~~g~afV~f~~~~~A~~Ai~~lng--~~~ 67 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLY----GNVEKVKFMKS---------KPGAAMVEMADGYAVDRAITHLNN--NFM 67 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTT----SCEEEEEECTT---------STTCEEEEESSHHHHHHHHHHHTT--CEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhc----CCeEEEEEecC---------CCCEEEEEECCHHHHHHHHHHhCC--CEE
Confidence 35799999999 899999999999999 99999999752 479999999999999999999997 455
Q ss_pred cccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccC---ccCCCCCCCCCC----cccc
Q psy5142 197 NENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKS---TEGDGEGNTEGS----KQVV 269 (410)
Q Consensus 197 ~~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~---~e~~~~~~~~~~----~~~~ 269 (410)
.| +.|.|.+...-... ... ........ +.-......... ....
T Consensus 68 -----------------------~g---~~l~v~~s~~~~~~---p~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 117 (205)
T 3tyt_A 68 -----------------------FG---QKMNVCVSKQPAIM---PGQ-SYGLEDGSCSYKDFSESRNNRFSTPEQAAKN 117 (205)
T ss_dssp -----------------------TT---EECEEEECSCSCCC---CCS-CCBCTTSCBSEEECTTCTTCSCSSHHHHTTS
T ss_pred -----------------------CC---ceEEEEEccCCccC---CCc-ccccccCCccccccCCCccccccCccccccc
Confidence 55 66666542100000 000 00000000 000000000000 0000
Q ss_pred cCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCe--eEEEeeCCC----ceEEEEeCChhHHHHHHHHhcCCCeEEc
Q psy5142 270 LELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEI--VFIEFNVGE----PTAFVRYKKENNAEAVLKALGSKEIVIK 343 (410)
Q Consensus 270 ~~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V--~~V~~~~g~----~~afV~F~~~e~A~~Al~~l~~~~~~i~ 343 (410)
...++..+|+|.|||+++++++|+++|++|| .| ..|.+.++. +.|||+|.+.++|.+||..| ++..|+
T Consensus 118 ~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G----~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~l--ng~~~~ 191 (205)
T 3tyt_A 118 RIQHPSNVLHFFNAPLEVTEENFFEICDELG----VKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFL--NHYQMK 191 (205)
T ss_dssp CCCCCCSEEEEEEECTTCCHHHHHHHHHHHT----CCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHH--TTCEEC
T ss_pred ccCCCcceEEEeCCCCCCCHHHHHHHHHhcC----CcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHh--CCCCcc
Confidence 1235678999999999999999999999999 87 788877642 57999999999999999999 677887
Q ss_pred Ce
Q psy5142 344 DV 345 (410)
Q Consensus 344 g~ 345 (410)
|.
T Consensus 192 g~ 193 (205)
T 3tyt_A 192 NP 193 (205)
T ss_dssp CS
T ss_pred CC
Confidence 75
No 18
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.90 E-value=8.8e-24 Score=187.66 Aligned_cols=161 Identities=16% Similarity=0.210 Sum_probs=129.7
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||.++|+++|+++|++| |.|..+.+. +..++ .++|||||+|.++++|++|++ ++| ..+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~----g~~~~~~~~-~~~~~----~~~g~afV~f~~~~~a~~A~~-l~g--~~~ 78 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISEL----FAKNDLAVV-DVRTG----TNRKFGYVDFESAEDLEKALE-LTG--LKV 78 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHH----HHHHTCCCC-EEEEE----TTTTEEEEEESSHHHHHHHHH-GGG--EEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHh----CCcceEEEE-ECCCC----ccccEEEEEECCHHHHHHHHh-cCC--CEe
Confidence 457999999999999999999999999 988773333 33333 789999999999999999995 665 455
Q ss_pred cccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCCe
Q psy5142 197 NENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGA 276 (410)
Q Consensus 197 ~~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g~ 276 (410)
.| +.|.|.+... .........+
T Consensus 79 -----------------------~g---~~l~v~~~~~--------------------------------~~~~~~~~~~ 100 (175)
T 1fje_B 79 -----------------------FG---NEIKLEKPKG--------------------------------RDSKKVRAAR 100 (175)
T ss_dssp -----------------------TT---EEEEEECCCC--------------------------------SSCSTTGGGG
T ss_pred -----------------------CC---eEEEEecCCC--------------------------------ccccccccCC
Confidence 66 7777764210 0011223567
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeC--CCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEecCc
Q psy5142 277 LLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNV--GEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVTG 354 (410)
Q Consensus 277 ~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~--g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l~g 354 (410)
.|+|.|||..+++++|+++|++|| .|..+ ... ..++|||+|.+.++|.+|+..| ++..++|+.|.|.....
T Consensus 101 ~l~v~nlp~~~t~~~l~~~F~~~g----~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 101 TLLAKNLSFNITEDELKEVFEDAL----EIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEK--QGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp EEEEESCCSSCCHHHHHHHCTTCS----EEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHH--TEEEETTEEEEEEECSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcC----eEEEe-cCCCCCceEEEEEECCHHHHHHHHHHh--CCCEECCeEEEEEecCC
Confidence 999999999999999999999999 99887 332 3457999999999999999999 67999999999987653
No 19
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.89 E-value=5.3e-22 Score=184.80 Aligned_cols=191 Identities=15% Similarity=0.147 Sum_probs=134.2
Q ss_pred ccceeeEeecCCC-CCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcc
Q psy5142 117 LIAQSLYVKYIPV-DATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLK 195 (410)
Q Consensus 117 ~~~rtv~V~~lp~-~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~ 195 (410)
...++|||+|||+ ++|+++|+++|++| |.|.+|+|+++ .+|||||+|.+.++|++|++.++| ..
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~----G~i~~v~i~~~---------~~g~afV~F~~~~~A~~Ai~~l~g--~~ 96 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVY----GDVQRVKILFN---------KKENALVQMADGNQAQLAMSHLNG--HK 96 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHH----TCEEEEEECCT---------TSCCEEEEESCHHHHHHHHHHHTT--CB
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhC----CCeEEEEEEEC---------CCCEEEEEECCHHHHHHHHHHhCC--Ce
Confidence 4578999999999 99999999999999 99999999863 278999999999999999998886 45
Q ss_pred ccccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhcccc-CccCCCCCCCCCCcccccCCCC
Q psy5142 196 FNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKK-STEGDGEGNTEGSKQVVLELPT 274 (410)
Q Consensus 196 ~~~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~-~~e~~~~~~~~~~~~~~~~~~~ 274 (410)
+ .| +.|.|.+...................+. ....................++
T Consensus 97 ~-----------------------~g---~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (229)
T 2adc_A 97 L-----------------------HG---KPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPP 150 (229)
T ss_dssp C-----------------------SS---SBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCS
T ss_pred E-----------------------CC---eEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCC
Confidence 5 45 5666554210000000000000000000 0000000000000111123456
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEe-eCCCceEEEEeCChhHHHHHHHHhcCCCeEEc-CeEEEEEec
Q psy5142 275 GALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEF-NVGEPTAFVRYKKENNAEAVLKALGSKEIVIK-DVKVSIEVV 352 (410)
Q Consensus 275 g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~-~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~-g~~v~v~~l 352 (410)
.++|+|.|||+.+++++|+++|++|| ..|..|.+ ..+.++|||+|.+.++|.+|+..| ++..++ |+.|.|...
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G---~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~~g~~l~v~~a 225 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNG---GVVKGFKFFQKDRKMALIQMGSVEEAVQALIDL--HNHDLGENHHLRVSFS 225 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTS---CCEEEEEECSSSTTCEEEEESSHHHHHHHHHHH--TTCBSSSSCBCEEEEC
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcC---CCeeEEEEEECCCcEEEEEECCHHHHHHHHHHH--CCCccCCCCeEEEEEe
Confidence 78999999999999999999999999 35888888 447789999999999999999999 678888 999999875
Q ss_pred C
Q psy5142 353 T 353 (410)
Q Consensus 353 ~ 353 (410)
.
T Consensus 226 ~ 226 (229)
T 2adc_A 226 K 226 (229)
T ss_dssp S
T ss_pred c
Confidence 4
No 20
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.88 E-value=2.4e-22 Score=182.17 Aligned_cols=184 Identities=15% Similarity=0.168 Sum_probs=132.3
Q ss_pred cceeeEeecCCC-CCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 118 IAQSLYVKYIPV-DATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 118 ~~rtv~V~~lp~-~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
..++|||+|||+ ++|+++|+++|++| |.|.+|.|+++ .+|||||+|.+.++|++|+..++| ..+
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~----G~i~~v~i~~~---------~~g~afV~f~~~~~a~~A~~~l~~--~~~ 66 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVY----GDVQRVKILFN---------KKENALVQMADGNQAQLAMSHLNG--HKL 66 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTT----CCCSEEECSTT---------CSSCCEEECTTTHHHHHHHHHHTT--CCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhc----CCEEEEEEEeC---------CCCEEEEEECCHHHHHHHHHHhCC--Cee
Confidence 468999999999 99999999999999 99999999863 278999999999999999998886 455
Q ss_pred cccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccc-c--CccCCCC---C-CCCCCcccc
Q psy5142 197 NENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSK-K--STEGDGE---G-NTEGSKQVV 269 (410)
Q Consensus 197 ~~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k-~--~~e~~~~---~-~~~~~~~~~ 269 (410)
.| +.|.|.+...... ...+.... . ...-... . .........
T Consensus 67 -----------------------~g---~~l~v~~a~~~~~------~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 114 (198)
T 1qm9_A 67 -----------------------HG---KPIRITLSKHQNV------QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQ 114 (198)
T ss_dssp -----------------------SS---CCCEEEECCCCSC------CCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCS
T ss_pred -----------------------cC---eEEEEEEecCCCc------CCCCcCCccccccccccCCchhhccCccccccc
Confidence 55 6666654210000 00000000 0 0000000 0 000000111
Q ss_pred cCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeC-CCceEEEEeCChhHHHHHHHHhcCCCeEEc-CeEE
Q psy5142 270 LELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNV-GEPTAFVRYKKENNAEAVLKALGSKEIVIK-DVKV 347 (410)
Q Consensus 270 ~~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~-g~~~afV~F~~~e~A~~Al~~l~~~~~~i~-g~~v 347 (410)
...++.++|+|.|||..+++++|+++|++|| ..|..|.+.+ +.+.|||+|.+.++|.+|+..| ++..++ |+.|
T Consensus 115 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G---~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~~g~~l 189 (198)
T 1qm9_A 115 NIFPPSATLHLSNIPPSVSEEDLKVLFSSNG---GVVKGFKFFQKDRKMALIQMGSVEEAVQALIDL--HNHDLGENHHL 189 (198)
T ss_dssp CCCCCCCEEEECCCCTTCCHHHHHHHHHHTT---SCCCEEEESSTTSSCEEEECSSHHHHHHHHHHH--TSSCCSSCCSC
T ss_pred cCCCCccEEEEeCCCCCCCHHHHHHHHHHcC---CCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHh--cCCccCCCCeE
Confidence 2246688999999999999999999999998 3578888844 6788999999999999999999 567888 9999
Q ss_pred EEEecC
Q psy5142 348 SIEVVT 353 (410)
Q Consensus 348 ~v~~l~ 353 (410)
.|....
T Consensus 190 ~v~~a~ 195 (198)
T 1qm9_A 190 RVSFSK 195 (198)
T ss_dssp CEEEEC
T ss_pred EEEeec
Confidence 888654
No 21
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.88 E-value=3.1e-22 Score=190.11 Aligned_cols=153 Identities=19% Similarity=0.287 Sum_probs=130.2
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| |.|.+|.|. +.+|||||+|.+.++|.+|+..++| ..+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~----------~~kg~afV~f~~~~~A~~A~~~l~g--~~i 83 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERY----GEPSEVFIN----------RDRGFGFIRLESRTLAEIAKAELDG--TIL 83 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGG----CCCSEEEEE----------TTTTEEEEECSSHHHHHHHHHHHTT--CEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc----CCEEEEEEe----------CCCcEEEEEECCHHHHHHHHHHcCC--cEE
Confidence 457899999999999999999999999 999999985 4589999999999999999998886 445
Q ss_pred cccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCCe
Q psy5142 197 NENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGA 276 (410)
Q Consensus 197 ~~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g~ 276 (410)
.| +.|.|.+. .+++
T Consensus 84 -----------------------~g---~~l~v~~a----------------------------------------~~~~ 97 (261)
T 3sde_A 84 -----------------------KS---RPLRIRFA----------------------------------------THGA 97 (261)
T ss_dssp -----------------------TT---EECEEEEC----------------------------------------CCSS
T ss_pred -----------------------CC---ceeEeeec----------------------------------------ccCC
Confidence 66 77777641 2356
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC-----CceEEEEeCChhHHHHHHHHhcCCCeEE--cCeEEEE
Q psy5142 277 LLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG-----EPTAFVRYKKENNAEAVLKALGSKEIVI--KDVKVSI 349 (410)
Q Consensus 277 ~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g-----~~~afV~F~~~e~A~~Al~~l~~~~~~i--~g~~v~v 349 (410)
.|+|.|||+.+++++|+++|++|| .|..|.+..+ .++|||+|.+.++|.+|+..|+++.+.+ .++.|.|
T Consensus 98 ~l~v~nl~~~~t~~~l~~~F~~~G----~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 98 ALTVKNLSPVVSNELLEQAFSQFG----PVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGS----CEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cccccCCCCCCCHHHHHHHHHhcC----CeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 899999999999999999999999 9999988754 3469999999999999999996443332 2788999
Q ss_pred EecCch
Q psy5142 350 EVVTGE 355 (410)
Q Consensus 350 ~~l~g~ 355 (410)
..+...
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 887654
No 22
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.88 E-value=3.2e-22 Score=192.38 Aligned_cols=165 Identities=17% Similarity=0.278 Sum_probs=131.5
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCC-ceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDV-KITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G-~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
..++|||+|||+++|+++|+++|++| | .|..|.|+++..+ .++|||||+|.+.++|.+|+..++| ..+
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~----G~~i~~v~i~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g--~~~ 184 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDI----NVVALSIRLPSLRFN-----TSRRFAYIDVTSKEDARYCVEKLNG--LKI 184 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHT----TCCCCEEECC------------CCEEEEECSSHHHHHHHHHHHTT--CEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHh----CCCeEEEEEEeCCCC-----CcceEEEEEECCHHHHHHHHHHhCC--CEe
Confidence 36899999999999999999999999 9 9999999988775 7899999999999999999998886 455
Q ss_pred cccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCCe
Q psy5142 197 NENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGA 276 (410)
Q Consensus 197 ~~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g~ 276 (410)
.| +.|.|.+...... . ..........+
T Consensus 185 -----------------------~g---~~l~v~~a~~~~~----------------~-----------~~~~~~~~~~~ 211 (292)
T 2ghp_A 185 -----------------------EG---YTLVTKVSNPLEK----------------S-----------KRTDSATLEGR 211 (292)
T ss_dssp -----------------------TT---EECEEEECCCC------------------------------------CCTTT
T ss_pred -----------------------CC---cEEEEEECCCCcc----------------c-----------ccccccCCCCc
Confidence 66 7777765211000 0 00011245667
Q ss_pred EEEEeCCCCC-CCHHHHHHHHHhcCCCCCCeeEEEeeCCC-------ceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEE
Q psy5142 277 LLKISDIKEP-VSREDIREVLEKVQTDDQEIVFIEFNVGE-------PTAFVRYKKENNAEAVLKALGSKEIVIKDVKVS 348 (410)
Q Consensus 277 ~l~v~nL~~~-~t~edLk~~F~~~G~~~~~V~~V~~~~g~-------~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~ 348 (410)
.|+|.|||+. +++++|+++|++|| .|..|.+.++. ++|||+|.+.++|.+|+ .| ++..++|+.|.
T Consensus 212 ~l~v~nlp~~~~t~~~l~~~F~~~G----~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l--~g~~~~g~~i~ 284 (292)
T 2ghp_A 212 EIMIRNLSTELLDENLLRESFEGFG----SIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QM--NRSLLGNREIS 284 (292)
T ss_dssp EEEEEEECTTTCCHHHHHHHHGGGS----CEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GG--TTEEETTEEEE
T ss_pred eEEEECCCcccCCHHHHHHHHhccC----CeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hh--cCCEECCcEEE
Confidence 9999999999 99999999999999 99999997643 36999999999999999 99 67999999999
Q ss_pred EEecC
Q psy5142 349 IEVVT 353 (410)
Q Consensus 349 v~~l~ 353 (410)
|....
T Consensus 285 V~~a~ 289 (292)
T 2ghp_A 285 VSLAD 289 (292)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 99875
No 23
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.88 E-value=1.9e-21 Score=186.25 Aligned_cols=150 Identities=19% Similarity=0.298 Sum_probs=130.7
Q ss_pred hccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcc
Q psy5142 116 DLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLK 195 (410)
Q Consensus 116 ~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~ 195 (410)
....++|||+|||.++|+++|+++|+.| | |.+|.+ . .++|+|||+|.+.++|.+|+..++| ..
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~----G-i~~~~~-----~-----~~~g~afV~f~~~~~A~~A~~~l~~--~~ 81 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQEVHDLLSDY----E-LKYCFV-----D-----KYKGTAFVTLLNGEQAEAAINAFHQ--SR 81 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHHHHHHTTTS----C-EEEEEE-----E-----TTTTEEEEEESSHHHHHHHHHHHTT--CE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHc----C-CEEEEE-----e-----cCCCEEEEEeCCHHHHHHHHHHcCC--Ce
Confidence 3567899999999999999999999999 9 999988 2 6799999999999999999999886 44
Q ss_pred ccccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCC
Q psy5142 196 FNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTG 275 (410)
Q Consensus 196 ~~~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g 275 (410)
+ .| +.|.+.+ .+.+
T Consensus 82 ~-----------------------~g---~~i~v~~----------------------------------------~~~~ 95 (284)
T 3smz_A 82 L-----------------------RE---RELSVQL----------------------------------------QPTD 95 (284)
T ss_dssp E-----------------------TT---EECEEEE----------------------------------------CCCS
T ss_pred e-----------------------CC---eEEEEEe----------------------------------------cCCC
Confidence 5 66 7777754 1345
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEE
Q psy5142 276 ALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE------PTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSI 349 (410)
Q Consensus 276 ~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v 349 (410)
+.|+|.|||+.+++++|+++|++|| .|..|.+..+. ++|||+|.+.++|.+|+..+ ++..++|+.|.|
T Consensus 96 ~~l~v~nlp~~~t~~~l~~~f~~~G----~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l--~~~~~~g~~i~v 169 (284)
T 3smz_A 96 ALLCVANLPPSLTQQQFEELVRPFG----SLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDL--LGKPLGPRTLYV 169 (284)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGS----CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CEEEEcCCCCcCCHHHHHHHHHhcC----CeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHh--CCCEeCCcEEEE
Confidence 6899999999999999999999999 99998887542 36999999999999999999 678999999999
Q ss_pred EecCc
Q psy5142 350 EVVTG 354 (410)
Q Consensus 350 ~~l~g 354 (410)
.....
T Consensus 170 ~~a~~ 174 (284)
T 3smz_A 170 HWTDA 174 (284)
T ss_dssp EECCG
T ss_pred EECCC
Confidence 87753
No 24
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.87 E-value=2.5e-21 Score=186.14 Aligned_cols=154 Identities=13% Similarity=0.213 Sum_probs=128.9
Q ss_pred hccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcc
Q psy5142 116 DLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLK 195 (410)
Q Consensus 116 ~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~ 195 (410)
+...++|||+|||+++|+++|+++|++| |.|.+|.|+++..+ .+|+|||+|.+.++|++|++ ++| ..
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~------~~g~afV~f~~~~~A~~A~~-~~~--~~ 104 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHC----GPIIHVDVADSLKK------NFRFARIEFARYDGALAAIT-KTH--KV 104 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGG----SCEEEEEEEECTTS------SSEEEEEEESSHHHHHHHHT-TTT--CE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECCCC------CcEEEEEEECCHHHHHHHHH-hCC--cE
Confidence 4668999999999999999999999999 99999999987654 48999999999999999996 564 45
Q ss_pred ccccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCC
Q psy5142 196 FNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTG 275 (410)
Q Consensus 196 ~~~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g 275 (410)
+ .| +.|.+.+ ...
T Consensus 105 ~-----------------------~g---~~i~v~~-----------------------------------------~~~ 117 (292)
T 2ghp_A 105 V-----------------------GQ---NEIIVSH-----------------------------------------LTE 117 (292)
T ss_dssp E-----------------------TT---EECEEEE-----------------------------------------CCS
T ss_pred e-----------------------CC---cEEEEEE-----------------------------------------CCC
Confidence 5 66 7776653 235
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeC-----CCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEE
Q psy5142 276 ALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNV-----GEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIE 350 (410)
Q Consensus 276 ~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~-----g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~ 350 (410)
+.|+|.|||+.+++++|+++|++|| ..|..|.+.. ..++|||+|.+.++|.+|+..| ++..++|+.|.|.
T Consensus 118 ~~l~v~nlp~~~t~~~l~~~f~~~G---~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 192 (292)
T 2ghp_A 118 CTLWMTNFPPSYTQRNIRDLLQDIN---VVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKL--NGLKIEGYTLVTK 192 (292)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHTT---CCCCEEECC-------CCEEEEECSSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhC---CCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHh--CCCEeCCcEEEEE
Confidence 6899999999999999999999998 3567777654 3467999999999999999999 6789999999998
Q ss_pred ecCc
Q psy5142 351 VVTG 354 (410)
Q Consensus 351 ~l~g 354 (410)
....
T Consensus 193 ~a~~ 196 (292)
T 2ghp_A 193 VSNP 196 (292)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 7653
No 25
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=8.4e-18 Score=137.26 Aligned_cols=89 Identities=43% Similarity=0.728 Sum_probs=79.6
Q ss_pred hhccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCc
Q psy5142 115 KDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNL 194 (410)
Q Consensus 115 ~~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~ 194 (410)
.+...++|||+|||+++|+++|+++|++| |+|.+|+|+++..+ .++|||||+|.+.++|++|+. +++ .
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~----G~v~~v~i~~d~~g-----~~rG~aFV~F~~~e~a~~Ai~-~~~--~ 74 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDK----GQVLNIQMRRTLHK-----AFKGSIFVVFDSIESAKKFVE-TPG--Q 74 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTS----SCEEEEEEECCCTT-----SCCCEEEEEESSHHHHHHHHT-SSC--C
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhc----CCEEEEEEEECCCC-----CCccEEEEEECCHHHHHHHHH-cCC--C
Confidence 34667999999999999999999999999 99999999998874 899999999999999999999 564 5
Q ss_pred cccccccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHH
Q psy5142 195 KFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQ 241 (410)
Q Consensus 195 ~~~~~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~ 241 (410)
.+ .| +.|.|.++.+|...+..
T Consensus 75 ~~-----------------------~g---r~l~V~~~~~~~~~k~~ 95 (103)
T 1s79_A 75 KY-----------------------KE---TDLLILFKDDYFAKKNE 95 (103)
T ss_dssp CC-----------------------TT---TTCEEEEHHHHHHHHHC
T ss_pred EE-----------------------CC---EEEEEEEchHHHHHHHH
Confidence 66 78 99999999999876543
No 26
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.66 E-value=1.6e-16 Score=131.96 Aligned_cols=66 Identities=18% Similarity=0.264 Sum_probs=60.2
Q ss_pred ceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 119 AQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 119 ~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
..+|||+|||+++|+++|+++|++| |.|.+|+|+++.. .++|||||+|.+.++|++|++.++| ..+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~----G~v~~v~i~~d~~------~~kg~afV~f~~~~~A~~Ai~~l~~--~~~ 70 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAF----GNILSCKVVCDEN------GSKGYGFVHFETQEAAERAIEKMNG--MLL 70 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEEETT------EEEEEEEEEESCHHHHHHHHHHHTT--CEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhcc----CCEEEEEEeecCC------CCCceEEEEECCHHHHHHHHHHcCC--CEE
Confidence 4689999999999999999999999 9999999998754 4699999999999999999999886 455
No 27
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.61 E-value=1.1e-15 Score=123.56 Aligned_cols=70 Identities=20% Similarity=0.337 Sum_probs=64.4
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
.+.++|||+|||+++|+++|+++|++| |.|.+|+|++++.++ .++|||||+|.+.++|++|++.++| ..+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~----G~I~~v~i~~d~~tg----~~kG~afV~f~~~~~A~~Ai~~lng--~~~ 86 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSI----GEVESAKLIRDKVAG----HSLGYGFVNYVTAKDAERAINTLNG--LRL 86 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEEECSSSC----CEEEEEEEEESSHHHHHHHHHHHTT--CEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEeEeeecCCCC----cccccEEEEECCHHHHHHHHHHhCC--CEE
Confidence 446789999999999999999999999 999999999988775 8999999999999999999999986 556
No 28
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.60 E-value=3.2e-15 Score=151.98 Aligned_cols=77 Identities=18% Similarity=0.237 Sum_probs=69.5
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCeE
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDVK 346 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~ 346 (410)
.+.++|||.|||+.||+++|+++|++|| .|..|.++.+ .++|||.|.+.++|.+||..| ++..|+|+.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G----~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l--ng~~i~gr~ 173 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYG----PIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA--DGKKIDGRR 173 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC----CeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHc--CCCEECCEE
Confidence 4567999999999999999999999999 9999988754 457999999999999999999 678999999
Q ss_pred EEEEecCch
Q psy5142 347 VSIEVVTGE 355 (410)
Q Consensus 347 v~v~~l~g~ 355 (410)
|.|.+..+.
T Consensus 174 i~V~~a~~~ 182 (437)
T 3pgw_S 174 VLVDVERGR 182 (437)
T ss_pred EEEEEeCCC
Confidence 999988754
No 29
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.58 E-value=2.5e-14 Score=124.99 Aligned_cols=76 Identities=20% Similarity=0.330 Sum_probs=68.6
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCeEEcCe
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE------PTAFVRYKKENNAEAVLKALGSKEIVIKDV 345 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~~i~g~ 345 (410)
....+.|||.|||+.+++++|+++|++|| .|..|.+..+. ++|||+|.+.++|++|+..| ++..++|+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G----~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~ 140 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYG----RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM--DGAVLDGR 140 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHS----CEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHS--TTEESSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC----CeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHh--CCCEECCe
Confidence 35568999999999999999999999999 99999987652 47999999999999999999 67999999
Q ss_pred EEEEEecC
Q psy5142 346 KVSIEVVT 353 (410)
Q Consensus 346 ~v~v~~l~ 353 (410)
.|.|....
T Consensus 141 ~l~v~~a~ 148 (158)
T 2kn4_A 141 ELRVQMAR 148 (158)
T ss_dssp EEEEEEEC
T ss_pred EEEEEECC
Confidence 99999865
No 30
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.55 E-value=7.7e-15 Score=121.02 Aligned_cols=69 Identities=12% Similarity=0.056 Sum_probs=64.1
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
..++|||+|||+++|+++|+++|++| |.|.+|.|+++..++ +++|||||+|.+.++|++|++.++| ..+
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~----G~i~~v~i~~d~~tg----~~rG~aFV~f~~~~~A~~Ai~~lng--~~~ 73 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKY----GEVEEVEILLHPRTR----KHLGLARVLFTSTRGAKETVKNLHL--TSV 73 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEEECTTTC----CEEEEEEEEESSHHHHHHHHHHHTT--CEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhc----CCeeEEEEEECCCCC----ceeeEEEEEECCHHHHHHHHHHhCC--CEE
Confidence 35899999999999999999999999 999999999998875 8999999999999999999999996 455
No 31
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.55 E-value=2.2e-15 Score=119.87 Aligned_cols=63 Identities=19% Similarity=0.389 Sum_probs=59.3
Q ss_pred eeeEeecCCCCCCHHHHHHHHhhccCCCC-ceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcC
Q psy5142 120 QSLYVKYIPVDATLDDIKDFFKKNTSEDV-KITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENK 190 (410)
Q Consensus 120 rtv~V~~lp~~~t~~~L~~~F~~~~~~~G-~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~ 190 (410)
++|||+|||+++|+++|+++|++| | .|.+|+|++++.++ .++|||||+|.+.++|++|++.+.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~----G~~v~~v~i~~d~~t~----~~rg~aFV~F~~~~~A~~Ai~~~~ 65 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSH----GVQAREVRLMRNKSSG----QSRGFAFVEFSHLQDATRWMEANQ 65 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHH----TCCCSBCCSSSCSSSC----CCSSEEEEECSSHHHHHHHHHTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHh----CCEeEEEEEEecCCCC----CcCceEEEEecCHHHHHHHHHhcC
Confidence 689999999999999999999999 9 89999999998876 899999999999999999998764
No 32
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.54 E-value=2.5e-14 Score=124.10 Aligned_cols=78 Identities=12% Similarity=0.237 Sum_probs=70.8
Q ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC-CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEE
Q psy5142 271 ELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG-EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSI 349 (410)
Q Consensus 271 ~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g-~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v 349 (410)
...+.+.|||.|||+.+++++|+++|++|| .|..|.+.++ .++|||+|.+.++|.+|+..| ++..++|+.|.|
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G----~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v 142 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYG----PLRSVWVARNPPGFAFVEFEDPRDAADAVREL--DGRTLCGCRVRV 142 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHS----CEEEEEECSSSCSEEEEEESSHHHHHHHHHHH--SSSCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhC----CEEEEEEeeCCCcEEEEEECCHHHHHHHHHHc--CCCEECCeEEEE
Confidence 345678999999999999999999999999 9999999887 789999999999999999999 678899999999
Q ss_pred EecCc
Q psy5142 350 EVVTG 354 (410)
Q Consensus 350 ~~l~g 354 (410)
....+
T Consensus 143 ~~a~~ 147 (150)
T 2i2y_A 143 ELSNG 147 (150)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 88653
No 33
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.53 E-value=1.6e-14 Score=112.64 Aligned_cols=70 Identities=20% Similarity=0.236 Sum_probs=63.7
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| |.|..|.|+++..++ .++|+|||+|.+.++|++|++.++| ..+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~----G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g--~~~ 74 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPF----GDITDIQIPLDYETE----KHRGFAFVEFELAEDAAAAIDNMNE--SEL 74 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGG----SCEEEEECCEETTTT----EECSEEEEEESSHHHHHHHHHHHTT--CEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhcc----CCEEEEEEEECCCCC----ccccEEEEEECCHHHHHHHHHHhCC--CEE
Confidence 346899999999999999999999999 999999999886665 7899999999999999999998886 455
No 34
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.53 E-value=2.3e-14 Score=112.26 Aligned_cols=69 Identities=22% Similarity=0.153 Sum_probs=62.9
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
..++|||+|||.++|+++|+++|++| |.|.+|.|+++..++ .++|||||+|.+.++|++|++.++| ..+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~A~~A~~~l~g--~~~ 73 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPF----GRISDARVVKDMATG----KSKGYGFVSFFNKWDAENAIQQMGG--QWL 73 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTC----CEEEEEEEEESSHHHHHHHHHHHTT--CEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhc----CCEeEEEEEecCCCC----ccceEEEEEECCHHHHHHHHHHcCC--CEE
Confidence 46899999999999999999999999 999999999987665 7899999999999999999999886 455
No 35
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.53 E-value=4.3e-15 Score=119.30 Aligned_cols=67 Identities=15% Similarity=0.236 Sum_probs=61.8
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCc--eEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVK--ITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~--I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
..-.||||+|||+++|+++|+++|++| |. |.+|++++++.++ .++|||||+|.+.++|++|++.++|
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~----G~i~v~~v~i~~d~~tg----~srG~aFV~f~~~~~A~~Ai~~lng 75 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPY----ASLAVNNIRLIKDKQTQ----QNRGFAFVQLSSAMDASQLLQILQS 75 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTT----CCCCGGGEECCCCSSSS----SCSSEEEEECSSSHHHHHHHHHHHS
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhh----CCccEEEEEEEecCCCC----CCceEeEEEECCHHHHHHHHHHhcC
Confidence 446799999999999999999999999 94 6799999998876 8999999999999999999999886
No 36
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.52 E-value=1.1e-14 Score=115.31 Aligned_cols=67 Identities=15% Similarity=0.164 Sum_probs=59.9
Q ss_pred eeeEeecCCCCCCHHHHHHHHhhccCCCC--ceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 120 QSLYVKYIPVDATLDDIKDFFKKNTSEDV--KITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 120 rtv~V~~lp~~~t~~~L~~~F~~~~~~~G--~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
.+|||+|||+++|+++|+++|++| | .|.+|+|++++.++ .++|||||+|.+.++|++|++.++| ..+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~----G~~~v~~v~i~~~~~~g----~~kG~afV~f~~~~~a~~Ai~~l~g--~~~ 70 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSL----GVNDILEIKFFENRANG----QSKGFALVGVGSEASSKKLMDLLPK--REL 70 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTT----TCCCCCCEEEEECTTTC----CEEEEEEECC-CHHHHHHHHHHGGG--SCS
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHh----CCCceEEEEEEecCCCC----ccCcEEEEEECCHHHHHHHHHHcCC--Cee
Confidence 589999999999999999999999 9 99999999988765 8999999999999999999999986 456
No 37
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.52 E-value=2e-14 Score=113.06 Aligned_cols=70 Identities=20% Similarity=0.283 Sum_probs=63.4
Q ss_pred hccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcc
Q psy5142 116 DLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLK 195 (410)
Q Consensus 116 ~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~ 195 (410)
+.+.++|||+|||+++|+++|+++|++| |.|.+|.++++..++ .++|||||+|.+.++|++|+ .++| ..
T Consensus 3 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~a~-~~~g--~~ 71 (89)
T 3ucg_A 3 EADARSIYVGNVDYGATAEELEAHFHGC----GSVNRVTILCDKFSG----HPKGFAYIEFSDKESVRTSL-ALDE--SL 71 (89)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHGGG----CCEEEEEEEESCSSS----SCCEEEEEEESSTHHHHHHG-GGTT--CE
T ss_pred CCcCCEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEEecCCCC----CcceEEEEEECCHHHHHHHH-hcCC--CE
Confidence 3567999999999999999999999999 999999999987665 88999999999999999999 7775 45
Q ss_pred c
Q psy5142 196 F 196 (410)
Q Consensus 196 ~ 196 (410)
+
T Consensus 72 ~ 72 (89)
T 3ucg_A 72 F 72 (89)
T ss_dssp E
T ss_pred E
Confidence 6
No 38
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=3.1e-14 Score=114.40 Aligned_cols=70 Identities=23% Similarity=0.230 Sum_probs=64.0
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| |.|..|.|+++..++ .++|||||+|.+.++|++|++.++| ..+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g--~~~ 75 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAY----GPLSELHYPIDSLTK----KPKGFAFVTFMFPEHAVKAYAEVDG--QVF 75 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTT----SCEEEEECCCCTTTC----CCCSEEEEEESSHHHHHHHHHHTTT--EES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEeEEEEEecCCCC----CcCeEEEEEECCHHHHHHHHHHhCC--CEE
Confidence 457899999999999999999999999 999999999988654 8899999999999999999999886 455
No 39
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.51 E-value=2.2e-14 Score=118.68 Aligned_cols=101 Identities=17% Similarity=0.344 Sum_probs=83.8
Q ss_pred ceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccccc
Q psy5142 119 AQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFNE 198 (410)
Q Consensus 119 ~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~~~ 198 (410)
.++|||+|||+++|+++|+++|++| |.|.+|.|+++. ..+|||||+|.+.++|.+|+..++| ..+
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~v~i~~~~-------~~~g~afV~f~~~~~A~~A~~~l~g--~~~-- 72 (115)
T 3lqv_A 8 NRILYIRNLPYKITAEEMYDIFGKY----GPIRQIRVGNTP-------ETRGTAYVVYEDIFDAKNAVDHLSG--FNV-- 72 (115)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEECST-------TTTTCEEEEESSHHHHHHHHHHHTT--CBS--
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeeCC-------CCCcEEEEEECCHHHHHHHHHHcCC--CEE--
Confidence 5899999999999999999999999 999999998643 4599999999999999999999886 456
Q ss_pred cccchhhhhhhhcccccccccCcccccchhhhchHHHHHHHHHHHHhhhhccccCccCCCCCCCCCCcccccCCCCCeEE
Q psy5142 199 NCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGALL 278 (410)
Q Consensus 199 ~~~~~~~~k~~~~~~~~~~~~~g~~~~~L~v~~k~~~~~~k~~e~~~~~~k~k~~~e~~~~~~~~~~~~~~~~~~~g~~l 278 (410)
.| +.|.|.+...-..
T Consensus 73 ---------------------~g---~~l~v~~a~~~~~----------------------------------------- 87 (115)
T 3lqv_A 73 ---------------------SN---RYLVVLYYNANRA----------------------------------------- 87 (115)
T ss_dssp ---------------------SS---CBCEEEECCHHHH-----------------------------------------
T ss_pred ---------------------CC---eEEEEEEecCChh-----------------------------------------
Confidence 67 8888876321100
Q ss_pred EEeCCCCCCCHHHHHHHHHhcC
Q psy5142 279 KISDIKEPVSREDIREVLEKVQ 300 (410)
Q Consensus 279 ~v~nL~~~~t~edLk~~F~~~G 300 (410)
..+++...++++|.++|++||
T Consensus 88 -~~~~~~~~~~~~l~~~~~~~g 108 (115)
T 3lqv_A 88 -FQKMDTKKKEEQLKLLKEKYG 108 (115)
T ss_dssp -TTTSCHHHHHHHHHHHHHHHC
T ss_pred -hhhhhHhHhHHHHHHHHHHhC
Confidence 024666778999999999999
No 40
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=4.6e-14 Score=112.47 Aligned_cols=69 Identities=28% Similarity=0.388 Sum_probs=63.6
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
..++|||+|||.++|+++|+++|++| |.|..|.|+++..++ .++|||||+|.+.++|++|++.++| ..+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g--~~~ 72 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPF----GKIDNIVLMKDSDTG----RSKGYGFITFSDSECARRALEQLNG--FEL 72 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEECCSSSC----CCCSEEEEEESCHHHHHHHHHHHTT--CCS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc----CCEeEEEEeecCCCC----ceeeEEEEEECCHHHHHHHHHHhCC--Cee
Confidence 35899999999999999999999999 999999999987765 8899999999999999999998886 455
No 41
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.51 E-value=4e-14 Score=109.83 Aligned_cols=67 Identities=15% Similarity=0.202 Sum_probs=62.0
Q ss_pred eeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 120 QSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 120 rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
.+|||+|||.++|+++|+++|++| |.|.+|.++++..++ .++|||||+|.+.++|++|+..++| ..+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~~----~~~g~afV~f~~~~~a~~a~~~l~g--~~~ 68 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDF----PSYLSGHVMWDMQTG----SSRGYGFVSFTSQDDAQNAMDSMQG--QDL 68 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTS----TTEEEEEEEECTTTC----CEEEEEEEEESCHHHHHHHHHHHTT--CEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEEEcCCCC----CccceEEEEECCHHHHHHHHHHhcC--Cee
Confidence 689999999999999999999999 999999999887665 8899999999999999999999886 455
No 42
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.51 E-value=2.4e-14 Score=112.28 Aligned_cols=66 Identities=21% Similarity=0.364 Sum_probs=61.0
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcC
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENK 190 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~ 190 (410)
...++|||+|||+++|+++|+++|++| |.|.+|.|+++..++ .++|||||+|.+.++|++|++..+
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g----~~~g~afV~f~~~~~a~~A~~~~~ 74 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKF----GEVVDCTIKMDPNTG----RSRGFGFILFKDAASVEKVLDQKE 74 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTT----SCEEEEEEEECTTTC----CEEEEEEEEESSTHHHHHHHHSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEeecCCCC----ccccEEEEEECCHHHHHHHHHhCC
Confidence 457899999999999999999999999 999999999987765 889999999999999999997744
No 43
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.50 E-value=4e-14 Score=112.78 Aligned_cols=69 Identities=13% Similarity=0.204 Sum_probs=63.3
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| |.|.+|.|+++..+ .++|||||+|.+.++|++|++.+++ ..+
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~----G~i~~v~i~~~~~g-----~~~g~afV~f~~~~~a~~A~~~l~g--~~~ 82 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQA----GPLTKVTICKDREG-----KPKSFGFVCFKHPESVSYAIALLNG--IRL 82 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTS-----CEEEEEEEEESSTHHHHHHHHHHTT--CEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc----CCEEEEEEEECCCC-----CCceEEEEEECCHHHHHHHHHHhCC--CEE
Confidence 456899999999999999999999999 99999999998764 8899999999999999999998886 455
No 44
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=6.1e-14 Score=114.12 Aligned_cols=70 Identities=21% Similarity=0.259 Sum_probs=64.3
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||.++|+++|+++|++| |.|.+|.|+++..++ .++|||||+|.+.++|++|+..++| ..+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g--~~~ 90 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEY----GEIKNIHLNLDRRTG----YLKGYTLVEYETYKEAQAAMEGLNG--QDL 90 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTS----SEEEEEEEEESCHHHHHHHHHHHTT--CBS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcc----CCeEEEEEEecCCCC----ceeeEEEEEECCHHHHHHHHHHhcC--CEE
Confidence 457899999999999999999999999 999999999987765 8899999999999999999999886 455
No 45
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=5.4e-14 Score=113.06 Aligned_cols=69 Identities=20% Similarity=0.380 Sum_probs=62.7
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||.++|+++|+++|++| |.|..|.|+++..++ .++|||||+|.+.++|++|++ +++ ..+
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~A~~-~~~--~~~ 76 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKF----GVVTEVVMIYDAEKQ----RPRGFGFITFEDEQSVDQAVN-MHF--HDI 76 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSS----SCEEEEEECCCTTTC----SCCSEEEEEESSHHHHHHHHH-HCC--CBS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEeCCCCC----CCCceEEEEECCHHHHHHHHH-hCC--CEE
Confidence 456899999999999999999999999 999999999987765 789999999999999999999 675 456
No 46
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4e-14 Score=114.38 Aligned_cols=70 Identities=19% Similarity=0.304 Sum_probs=63.9
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| |.|..|.|+++..++ .++|||||+|.+.++|++|++.+++ ..+
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~A~~A~~~l~g--~~~ 79 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKY----GQISEVVVVKDRETQ----RSRGFGFVTFENIDDAKDAMMAMNG--KSV 79 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHH----SCCCEEEECCCSSSC----SCCSEEEEECSSHHHHHHHHHHHTT--CCT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc----CCeEEEEEEeCCCCC----CcccEEEEEECCHHHHHHHHHHhCC--CEE
Confidence 346899999999999999999999999 999999999987765 7899999999999999999999886 455
No 47
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=4.3e-14 Score=112.50 Aligned_cols=70 Identities=20% Similarity=0.250 Sum_probs=64.0
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| |.|..|.|+++..++ .++|||||+|.+.++|++|+..++| ..+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~~~----~~~g~afV~f~~~~~A~~A~~~l~g--~~~ 82 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKY----GPIADVSIVYDQQSR----RSRGFAFVYFENVDDAKEAKERANG--MEL 82 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTT----SCEEEEEEEECSSSS----SEEEEEEEEESSHHHHHHHHHHHTT--EEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc----CCeeEEEEEEcCCCC----CcccEEEEEECCHHHHHHHHHHhCC--CEE
Confidence 346899999999999999999999999 999999999987765 7899999999999999999999886 455
No 48
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=5.5e-14 Score=114.19 Aligned_cols=70 Identities=17% Similarity=0.164 Sum_probs=64.2
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| |.|..|.|+++..++ .++|||||+|.+.++|++|++.+++ ..+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g--~~~ 82 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQA----GPVVNTHMPKDRVTG----QHQGYGFVEFLSEEDADYAIKIMDM--IKL 82 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTT----SCEEEEECCBCSSSC----SBCSCEEEEESSHHHHHHHHHHSSS--CBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCC----cCCcEEEEEECCHHHHHHHHHHhCC--CeE
Confidence 456899999999999999999999999 999999999987665 8999999999999999999999886 455
No 49
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.49 E-value=5.4e-14 Score=112.50 Aligned_cols=68 Identities=21% Similarity=0.308 Sum_probs=62.9
Q ss_pred ceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 119 AQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 119 ~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
.++|||+|||.++|+++|+++|++| |.|.+|.|+++..++ .++|||||+|.+.++|++|++.++| ..+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g----~~~g~afV~f~~~~~A~~Ai~~l~g--~~~ 69 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNV----GPVINLKMMFDPQTG----RSKGYAFIEFRDLESSASAVRNLNG--YQL 69 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCBCTTTC----CBCSEEEEEESSHHHHHHHHHHHTT--CEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhc----CCEEEEEEEeCCCCC----ccceEEEEEECCHHHHHHHHHHhCC--CeE
Confidence 4799999999999999999999999 999999999987765 7899999999999999999999886 455
No 50
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=3.9e-14 Score=112.67 Aligned_cols=70 Identities=23% Similarity=0.375 Sum_probs=64.0
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| |.|..|.|+++..++ .++|||||+|.+.++|++|++.+++ ..+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~~~----~~~g~afV~f~~~~~A~~A~~~l~g--~~~ 83 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKY----GKVVKVTIMKDKDTR----KSKGVAFILFLDKDSAQNCTRAINN--KQL 83 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTT----SCEEEEEECCCSSSC----CCTTCEEEEESCHHHHHHHHHHTTT--EEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc----CCeEEEEEEeCCCCC----CcccEEEEEECCHHHHHHHHHHcCC--Cee
Confidence 346899999999999999999999999 999999999988765 7899999999999999999999886 455
No 51
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.49 E-value=5.8e-14 Score=116.06 Aligned_cols=70 Identities=24% Similarity=0.191 Sum_probs=64.2
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| |.|..|.|+++..++ .++|||||+|.+.++|++|++.++| ..+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g--~~~ 82 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPF----GRISDARVVKDMATG----KSKGYGFVSFFNKWDAENAIQQMGG--QWL 82 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTC----CEEEEEEEEESSHHHHHHHHHHTTT--CEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEEcCCCC----CcceEEEEEECCHHHHHHHHHHhCC--CEE
Confidence 457999999999999999999999999 999999999987665 7899999999999999999999886 455
No 52
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=6.6e-14 Score=114.19 Aligned_cols=78 Identities=13% Similarity=0.181 Sum_probs=72.1
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEe
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEV 351 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~ 351 (410)
.++.++|||.|||+++++++|+++|++|| .|..|.+.+++++|||+|.+.++|++|++.+++++..++|+.|.|..
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG----~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFG----KVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHC----CEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC----CEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 35678999999999999999999999999 99999999999999999999999999999997667899999999987
Q ss_pred cC
Q psy5142 352 VT 353 (410)
Q Consensus 352 l~ 353 (410)
..
T Consensus 89 A~ 90 (105)
T 1sjq_A 89 SN 90 (105)
T ss_dssp CS
T ss_pred cC
Confidence 65
No 53
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.49 E-value=8.3e-14 Score=117.03 Aligned_cols=78 Identities=21% Similarity=0.313 Sum_probs=70.2
Q ss_pred cCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEc
Q psy5142 270 LELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIK 343 (410)
Q Consensus 270 ~~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~ 343 (410)
.....+++|||.|||+.+++++|+++|++|| .|..|.+..+ .++|||+|.+.++|++|++.| ++..|+
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~ 90 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYG----EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL--NGQDLM 90 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTS----CEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHH--TTCBSS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC----CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHh--CCCeeC
Confidence 3456689999999999999999999999999 9999998765 457999999999999999999 678899
Q ss_pred CeEEEEEecC
Q psy5142 344 DVKVSIEVVT 353 (410)
Q Consensus 344 g~~v~v~~l~ 353 (410)
|+.|.|....
T Consensus 91 g~~l~v~~a~ 100 (126)
T 3ex7_B 91 GQPISVDWCF 100 (126)
T ss_dssp SSBCEEEESE
T ss_pred CeEEEEEEec
Confidence 9999999764
No 54
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.4e-14 Score=115.15 Aligned_cols=70 Identities=17% Similarity=0.307 Sum_probs=64.2
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| |.|..|.|+++..++ .++|||||+|.+.++|++|+..++| ..+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~A~~A~~~l~g--~~~ 82 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPF----GSISRIYLAKDKTTG----QSKGFAFISFHRREDAARAIAGVSG--FGY 82 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTT----CCEEEEEEEECSSSC----SEEEEEEEEESSHHHHHHHHHHTTT--CEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC----CCeEEEEEeecCCCC----ceeeEEEEEECCHHHHHHHHHHcCC--Cee
Confidence 457999999999999999999999999 999999999987665 7899999999999999999999886 455
No 55
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.49 E-value=5e-14 Score=110.41 Aligned_cols=70 Identities=24% Similarity=0.245 Sum_probs=62.9
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
..++|||+|||.++|+++|+++|++| |.|.+|.|+++..++. .++|+|||+|.+.++|++|++.++| ..+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~~~i~~~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g--~~~ 72 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTY----GKIKMIDMPVERMHPH---LSKGYAYVEFENPDEAEKALKHMDG--GQI 72 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTT----SCEEEEECCEETTEEE---EECSEEEEEESSHHHHHHHHHHHTT--CEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEEeCCCCCC---CCCcEEEEEEecHHHHHHHHHHcCC--CeE
Confidence 46899999999999999999999999 9999999998876531 3899999999999999999999886 455
No 56
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.49 E-value=3.8e-14 Score=116.45 Aligned_cols=71 Identities=13% Similarity=0.267 Sum_probs=61.6
Q ss_pred hhccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCc
Q psy5142 115 KDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNL 194 (410)
Q Consensus 115 ~~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~ 194 (410)
.....++|||+|||.++|+++|+++|++| |.|.+|+|+++..++ .++|||||+|.+.++|.+|++.++ .
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~----G~i~~v~i~~~~~tg----~~kg~afV~f~~~~~A~~Ai~~~~---~ 89 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQF----GEVKECLVMRDPLTK----RSRGFGFVTFMDQAGVDKVLAQSR---H 89 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTT----SCEEEEEECCCTTTC----CCTTCEEEEESSHHHHHHHHHSSC---E
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHcc----CCeEEEEEEECCCCC----CcCcEEEEEECCHHHHHHHHHHCC---C
Confidence 34667999999999999999999999999 999999999988765 899999999999999999999875 5
Q ss_pred cc
Q psy5142 195 KF 196 (410)
Q Consensus 195 ~~ 196 (410)
.+
T Consensus 90 ~l 91 (109)
T 2rs2_A 90 EL 91 (109)
T ss_dssp EE
T ss_pred cC
Confidence 56
No 57
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=5.2e-14 Score=113.37 Aligned_cols=69 Identities=16% Similarity=0.362 Sum_probs=63.2
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||.++|+++|+++|++| |.|..|+|+++..+ .++|||||+|.+.++|++|++.++| ..+
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~g-----~~~g~afV~f~~~~~a~~A~~~l~g--~~~ 83 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAH----GTVKDLRLVTNRAG-----KPKGLAYVEYENESQASQAVMKMDG--MTI 83 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEEECTTS-----CEEEEEEEEESSHHHHHHHHHHHTT--EES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC----CCeEEEEEEECCCC-----CEEeEEEEEECCHHHHHHHHHHhCC--CEE
Confidence 557899999999999999999999999 99999999998844 7899999999999999999999886 455
No 58
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.49 E-value=1.6e-13 Score=110.83 Aligned_cols=80 Identities=16% Similarity=0.249 Sum_probs=73.6
Q ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEE
Q psy5142 271 ELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIE 350 (410)
Q Consensus 271 ~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~ 350 (410)
..+++.+|+|.|||+++|+++|+++|++|| .|..|.+.+.++.|||+|.+.++|.+|+..+++..+.++|+.|.|.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG----~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFG----PISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGS----CEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccC----CEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 346778999999999999999999999999 9999999999999999999999999999999766778999999998
Q ss_pred ecCc
Q psy5142 351 VVTG 354 (410)
Q Consensus 351 ~l~g 354 (410)
....
T Consensus 93 ~S~~ 96 (100)
T 3r27_A 93 YSTS 96 (100)
T ss_dssp ECSC
T ss_pred eccc
Confidence 7653
No 59
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=5.7e-14 Score=114.56 Aligned_cols=66 Identities=18% Similarity=0.288 Sum_probs=57.6
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| |.|.+|+|++ .+|||||+|.+.++|.+|++.+++....+
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~f----G~V~~v~i~~----------~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l 79 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPF----GKVTNLLMLK----------GKNQAFIEMNTEEAANTMVNYYTSVTPVL 79 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHH----CCEEEEEEET----------TTTEEEEEESSHHHHHHHHHHHTTSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEc----------CCCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 346899999999999999999999999 9999999974 37999999999999999999776322345
No 60
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.48 E-value=9.8e-14 Score=111.63 Aligned_cols=70 Identities=21% Similarity=0.341 Sum_probs=63.9
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEE--------EEEcccCcccccccccccEEEEEecCHHHHHHHHHh
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITN--------IIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNE 188 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~--------v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~ 188 (410)
...++|||+|||.++|+++|+++|++| |.|.. |+|++++.++ .++|||||+|.+.++|++|++.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~~~~~~~v~i~~~~~~g----~~~G~afV~f~~~~~a~~Ai~~ 82 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQI----GIIKTNKKTGQPMINLYTDRETG----KLKGEATVSFDDPPSAKAAIDW 82 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTT----SCBCEETTTTEESEEEEECTTTC----SEEEEEEEEBSSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh----CCEeeccccccccEEEEecCCCC----CeeeEEEEEECCHHHHHHHHHH
Confidence 456899999999999999999999999 99999 9999987765 8899999999999999999999
Q ss_pred cCCCCccc
Q psy5142 189 NKDKNLKF 196 (410)
Q Consensus 189 ~~g~~~~~ 196 (410)
++| ..+
T Consensus 83 l~g--~~~ 88 (99)
T 2la6_A 83 FDG--KEF 88 (99)
T ss_dssp HTT--CBS
T ss_pred hCC--CEe
Confidence 886 455
No 61
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=7.6e-14 Score=113.68 Aligned_cols=70 Identities=20% Similarity=0.329 Sum_probs=63.4
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEccc-CcccccccccccEEEEEecCHHHHHHHHHhc-CCCCc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNY-QDKLANQKKFKGSIFVTFDNKENAEKFLNEN-KDKNL 194 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~-~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~-~g~~~ 194 (410)
...++|||+|||+++|+++|+++|++| |.|..|+|+++ ..++ .++|||||+|.+.++|++|+..+ ++ .
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~~~--~ 82 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTF----GELKTVRLPKKMTGTG----AHRGFGFVDFITKQDAKKAFNALCHS--T 82 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCCCCSSSC----SSCSEEEEEESSHHHHHHHHHHHHTC--C
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHcc----CCeEEEEEecCCCCCC----CcCceEEEEECCHHHHHHHHHHhccC--C
Confidence 557999999999999999999999999 99999999988 5554 78999999999999999999998 75 4
Q ss_pred cc
Q psy5142 195 KF 196 (410)
Q Consensus 195 ~~ 196 (410)
.+
T Consensus 83 ~~ 84 (107)
T 2cph_A 83 HL 84 (107)
T ss_dssp BS
T ss_pred eE
Confidence 55
No 62
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=4.3e-14 Score=114.52 Aligned_cols=70 Identities=14% Similarity=0.222 Sum_probs=64.1
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| |.|..|.|+++..++ .++|||||+|.+.++|++|++.++| ..+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~A~~A~~~l~g--~~~ 80 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKY----GRVGDVYIPREPHTK----APRGFAFVRFHDRRDAQDAEAAMDG--AEL 80 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEECCBCSSSC----SBCSCEEEEESSSSHHHHHHHHHSS--CCB
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEeCCCCC----CCCeEEEEEECCHHHHHHHHHHcCC--CEE
Confidence 346899999999999999999999999 999999999988765 7899999999999999999999886 456
No 63
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=5.8e-14 Score=112.61 Aligned_cols=69 Identities=22% Similarity=0.288 Sum_probs=62.5
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCc---ccccccccccEEEEEecCHHHHHHHHHhcCCCCc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQD---KLANQKKFKGSIFVTFDNKENAEKFLNENKDKNL 194 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~---~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~ 194 (410)
..++|||+|||+++|+++|+++|++| |.|..|.|+++.. ++ .++|||||+|.+.++|++|++.++| .
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~gt~----~~~g~afV~f~~~~~a~~A~~~l~g--~ 73 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKV----GAIKSCTISKKKNKAGVL----LSMGFGFVEYKKPEQAQKALKQLQG--H 73 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEEEEECTTCCE----EEEEEEEEEESSHHHHHHHHHHSTT--C
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCCCc----CcccEEEEEECCHHHHHHHHHHhCC--C
Confidence 46899999999999999999999999 9999999998765 43 6899999999999999999999886 4
Q ss_pred cc
Q psy5142 195 KF 196 (410)
Q Consensus 195 ~~ 196 (410)
.+
T Consensus 74 ~~ 75 (98)
T 2cpf_A 74 TV 75 (98)
T ss_dssp EE
T ss_pred ee
Confidence 55
No 64
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=2.3e-14 Score=109.59 Aligned_cols=66 Identities=14% Similarity=0.311 Sum_probs=61.1
Q ss_pred eeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 120 QSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 120 rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
++|||+|||+++|+++|+++|++| |.|.+|.+++++.++ .++|+|||+|.+.++|++|++.++ ..+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~----G~v~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~a~~~~~---~~~ 66 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQF----GEVKECLVMRDPLTK----RSRGFGFVTFMDQAGVDKVLAQSR---HEL 66 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTT----SCCCCEEEECCCCSS----SCSSEEEECCCCTTHHHHHHHTTT---CCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEecCCCCC----CcCceEEEEEcCHHHHHHHHHhCC---Ccc
Confidence 589999999999999999999999 999999999987765 899999999999999999999887 455
No 65
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=7.2e-14 Score=115.38 Aligned_cols=71 Identities=14% Similarity=0.260 Sum_probs=64.4
Q ss_pred hhccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCc
Q psy5142 115 KDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNL 194 (410)
Q Consensus 115 ~~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~ 194 (410)
.+...++|||+|||+++|+++|+++|++| |.|..|.|+++..++ .++|||||+|.+.++|++|+ .++| .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g----~~~g~afV~f~~~~~a~~A~-~l~g--~ 89 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAV----GKVRDVRIISDRNSR----RSKGIAYVEFCEIQSVPLAI-GLTG--Q 89 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTT----SCEEEEEECCSCCSS----SCCCCEEEEESCGGGHHHHH-HHTT--E
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhC----CCEeEEEEEecCCCC----ccCcEEEEEeCcHHHHHHHH-HcCC--C
Confidence 34678999999999999999999999999 999999999988765 78999999999999999999 7775 5
Q ss_pred cc
Q psy5142 195 KF 196 (410)
Q Consensus 195 ~~ 196 (410)
.+
T Consensus 90 ~~ 91 (114)
T 2cq4_A 90 RL 91 (114)
T ss_dssp EE
T ss_pred Ee
Confidence 56
No 66
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.48 E-value=7.3e-14 Score=108.19 Aligned_cols=65 Identities=25% Similarity=0.314 Sum_probs=58.5
Q ss_pred eeeEeecCCCCC------CHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCC
Q psy5142 120 QSLYVKYIPVDA------TLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKN 193 (410)
Q Consensus 120 rtv~V~~lp~~~------t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~ 193 (410)
++|||+|||..+ |+++|+++|++| |.|.+|.|++ .++ .++|||||+|.+.++|++|+..++|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~----G~i~~v~i~~--~~g----~~~g~afV~f~~~~~A~~Ai~~lng-- 69 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKF----GKITNDFYPE--EDG----KTKGYIFLEYASPAHAVDAVKNADG-- 69 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTT----CCEEEEECCC--BTT----BCCCEEEEEESSHHHHHHHHTTSSS--
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhc----CCeEEEEecC--CCC----cEeEEEEEEECCHHHHHHHHHHhcC--
Confidence 799999999999 789999999999 9999999983 333 7899999999999999999999987
Q ss_pred ccc
Q psy5142 194 LKF 196 (410)
Q Consensus 194 ~~~ 196 (410)
..+
T Consensus 70 ~~~ 72 (81)
T 2krb_A 70 YKL 72 (81)
T ss_dssp CCC
T ss_pred ccc
Confidence 455
No 67
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=3.5e-14 Score=110.83 Aligned_cols=66 Identities=24% Similarity=0.233 Sum_probs=61.8
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
..++|||+|||+++|+++|+++|++| |.|..|.|++++.++ .++|||||+|.+.++|++|++.++|
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g 69 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPY----GKIVSTKAILDKTTN----KCKGYGFVDFDSPSAAQKAVTALKA 69 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTT----SCEEEEEEECCSSSC----SCCSEEEEEESCHHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCC----CcCcEEEEEECCHHHHHHHHHHhcC
Confidence 36899999999999999999999999 999999999987765 8899999999999999999998886
No 68
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4e-14 Score=113.02 Aligned_cols=69 Identities=12% Similarity=0.132 Sum_probs=63.1
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEE-EEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNI-IMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v-~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
..++|||+|||+++|+++|+++|++| |.|..| +|+++..++ .++|||||+|.+.++|++|++.++| ..+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~~i~~~~~~g----~~~g~afV~f~~~~~A~~A~~~l~g--~~~ 73 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAF----GVILQTPKIMRDPDTG----NSKGYAFINFASFDASDAAIEAMNG--QYL 73 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTT----SCBSSCCEECCCTTTC----SCCSEEEEEBSSHHHHHHHHHTTTT--CEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEEEEcCCCC----CcCeEEEEEECCHHHHHHHHHHcCC--CEE
Confidence 46899999999999999999999999 999999 999886665 7899999999999999999998886 455
No 69
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4.8e-14 Score=114.29 Aligned_cols=70 Identities=23% Similarity=0.320 Sum_probs=64.2
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||.++|+++|+++|++| |.|..|.|+++..++ .++|||||+|.+.++|++|++.++| ..+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~----G~i~~~~i~~~~~~g----~~~g~afV~f~~~~~a~~A~~~l~g--~~~ 75 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEV----GPVVSFRLVYDRETG----KPKGYGFCEYQDQETALSAMRNLNG--REF 75 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTT----SCCSEEEEEEETTTT----EEEEEEEEECSCHHHHHHHHHHSSS--BSC
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhc----CCeeEEEEEeCCCCC----ccceEEEEEECCHHHHHHHHHHhCC--Cee
Confidence 457999999999999999999999999 999999999887665 7899999999999999999999886 455
No 70
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.48 E-value=4.9e-14 Score=107.32 Aligned_cols=65 Identities=22% Similarity=0.389 Sum_probs=59.2
Q ss_pred eeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 121 SLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 121 tv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
+|||+|||+++|+++|+++|++| |.|.+|.|++++.++ .++|||||+|.+.++|++|++ +++ ..+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~a~~-~~~--~~~ 65 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQF----GKVDDAMLMFDKTTN----RHRGFGFVTFESEDIVEKVCE-IHF--HEI 65 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTT----SCCSEECCCBCSSST----TSCBEEEEECSCHHHHHHHHS-SSC--CCS
T ss_pred CEEEecCCCCCCHHHHHHHHHhc----CCEEEEEEEecCCCC----CcCcEEEEEECCHHHHHHHHH-CCC--CEE
Confidence 58999999999999999999999 999999999987665 899999999999999999998 564 455
No 71
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.48 E-value=6.1e-13 Score=107.78 Aligned_cols=74 Identities=9% Similarity=0.223 Sum_probs=68.4
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEe
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEV 351 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~ 351 (410)
..+.+.|||.|||+++++++|+++|++|| .|..|.+.+ ++|||+|.+.++|++|+..| ++..++|+.|.|..
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G----~i~~v~~~~--~~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFG----KLERVKKLK--DYAFIHFDERDGAVKAMEEM--NGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHS----CEEEEEECS--SCEEEEESSHHHHHHHHHHH--TTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC----CEEEEEEEC--CEEEEEeCCHHHHHHHHHHH--CCCccCCCEEEEEE
Confidence 45567999999999999999999999999 999999986 49999999999999999999 67899999999998
Q ss_pred cC
Q psy5142 352 VT 353 (410)
Q Consensus 352 l~ 353 (410)
..
T Consensus 80 a~ 81 (103)
T 2dgu_A 80 AK 81 (103)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 72
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.48 E-value=8.9e-14 Score=113.99 Aligned_cols=70 Identities=20% Similarity=0.184 Sum_probs=64.2
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||.++|+++|+++|++| |.|.+|.|+++..++ .++|||||+|.+.++|++|+..++| ..+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g--~~~ 93 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDY----GEIKNIHLNLDRRTG----FSKGYALVEYETHKQALAAKEALNG--AEI 93 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGG----SCEEEEECCBCTTTS----SBCSEEEEEESSHHHHHHHHHHHTT--CEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEecCCCC----CcceEEEEEECCHHHHHHHHHHcCC--CEE
Confidence 457999999999999999999999999 999999999887665 8899999999999999999998886 455
No 73
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.48 E-value=9.1e-14 Score=114.03 Aligned_cols=70 Identities=24% Similarity=0.306 Sum_probs=64.3
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||.++|+++|+++|++| |.|..|.|+++..++ .++|||||+|.+.++|++|++.++| ..+
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~~~g----~~~g~afV~F~~~~~A~~Ai~~l~g--~~i 93 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPF----GRIESIQLMMDSETG----RSKGYGFITFSDSECAKKALEQLNG--FEL 93 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTT----SCEEEEEEEEETTTT----EEEEEEEEEESCHHHHHHHHHHHTT--CCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEEcCCCC----ccceEEEEEECCHHHHHHHHHHcCC--CEE
Confidence 457999999999999999999999999 999999999887665 7899999999999999999999886 455
No 74
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=7.2e-14 Score=114.57 Aligned_cols=66 Identities=15% Similarity=0.278 Sum_probs=61.9
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcC
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENK 190 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~ 190 (410)
...++|||+|||+++|+++|+++|++| |.|.+|+|+++..++ .++|||||+|.+.++|.+|++.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g----~~~g~afV~f~~~~~A~~A~~~~~ 78 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQF----GDLKYVRVVLHPDTE----HSKGCAFAQFMTQEAAQKCLAAAS 78 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCBCSSSC----CBCSEEEEEESSHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCC----CCccEEEEEECCHHHHHHHHHHhc
Confidence 456899999999999999999999999 999999999988765 789999999999999999999987
No 75
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=6.3e-14 Score=112.59 Aligned_cols=69 Identities=19% Similarity=0.143 Sum_probs=63.6
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceE-EEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKIT-NIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~-~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
..++|||+|||+++|+++|+++|++| |.|. +|.|++++.++ .++|||||+|.+.++|++|++.++| ..+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~v~i~~~~~~g----~~~g~afV~f~~~~~a~~A~~~l~g--~~~ 77 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATM----GETVMSVKIIRNRLTG----IPAGYCFVEFADLATAEKCLHKING--KPL 77 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHT----TCCCCEEEEEECSSSC----CEEEEEEEECSCHHHHHHHHHTTTT--SEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHh----CCcceEEEEeecCCCC----CcCCEEEEEeCCHHHHHHHHHHHcC--Ccc
Confidence 46899999999999999999999999 9999 99999988665 7899999999999999999999886 455
No 76
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.47 E-value=8.8e-14 Score=116.54 Aligned_cols=73 Identities=18% Similarity=0.257 Sum_probs=65.2
Q ss_pred hhhhccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCC
Q psy5142 113 FVKDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDK 192 (410)
Q Consensus 113 ~~~~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~ 192 (410)
...+...++|||+|||+++|+++|+++|++| |.|.+|.|+++..++ .++|||||+|.+.++|.+|+ .++|
T Consensus 30 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~A~-~l~g- 99 (124)
T 2jwn_A 30 EKKEIDKRSVYVGNVDYGSTAQDLEAHFSSC----GSINRITILCDKFSG----HPKGYAYIEFAERNSVDAAV-AMDE- 99 (124)
T ss_dssp HHHHHHHTEEEEEEECTTCCHHHHHHHHHTT----SCEEEEEEEEECTTS----SCEEEEEEEESSHHHHHHHH-TTTT-
T ss_pred ccccCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEecCCCC----CcccEEEEEECCHHHHHHHH-hcCC-
Confidence 3456678999999999999999999999999 999999999987665 78999999999999999999 6775
Q ss_pred Cccc
Q psy5142 193 NLKF 196 (410)
Q Consensus 193 ~~~~ 196 (410)
..+
T Consensus 100 -~~~ 102 (124)
T 2jwn_A 100 -TVF 102 (124)
T ss_dssp -CEE
T ss_pred -CeE
Confidence 456
No 77
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.47 E-value=6.5e-14 Score=113.22 Aligned_cols=66 Identities=23% Similarity=0.271 Sum_probs=62.4
Q ss_pred cceeeEeecCCC------CCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 118 IAQSLYVKYIPV------DATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 118 ~~rtv~V~~lp~------~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
..++|||+|||+ ++++++|+++|++| |.|.+|+|+++..++ .++|||||+|.+.++|++|++.++|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~----G~i~~v~i~~d~~tg----~~kG~afV~f~~~~~A~~Ai~~lng 76 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKA----GKVVNMEFPIDEATG----KTKGFLFVECGSMNDAKKIIKSFHG 76 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTT----SCEEEEECCEETTTT----EECSEEEEEESSHHHHHHHHHHHTT
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhc----CCEeEEEEEEcCCCC----ccceEEEEEECCHHHHHHHHHHhCC
Confidence 468999999999 99999999999999 999999999998865 8999999999999999999999986
No 78
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.47 E-value=6e-14 Score=116.05 Aligned_cols=70 Identities=14% Similarity=0.150 Sum_probs=64.1
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| |.|..|.|+++..++ .++|||||+|.+.++|++|++.+++ ..+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g----~~~g~afV~f~~~~~a~~A~~~l~g--~~~ 92 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPF----GNVVSAKVFIDKQTN----LSKCFGFVSYDNPVSAQAAIQSMNG--FQI 92 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGG----SCCSEEEEEECSSSC----SEEEEEEEECSSHHHHHHHHHHHTT--CEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECCCCC----CcCccEEEEECCHHHHHHHHHHcCC--CEE
Confidence 456899999999999999999999999 999999999988665 8899999999999999999999886 456
No 79
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.47 E-value=6.3e-14 Score=116.39 Aligned_cols=71 Identities=17% Similarity=0.157 Sum_probs=64.9
Q ss_pred hccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcc
Q psy5142 116 DLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLK 195 (410)
Q Consensus 116 ~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~ 195 (410)
....++|||+|||+++|+++|+++|++| |.|.+|.|+++..++ .++|||||+|.+.++|++|++.++| ..
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~~~i~~~~~~g----~~~g~afV~f~~~~~A~~A~~~l~g--~~ 106 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPF----GNVISAKVFIDKQTS----LSKCFGFVSFDNPDSAQVAIKAMNG--FQ 106 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTS----CEEEEEEECCCSSSS----CCCCEEEEEEESSHHHHHHHHHCCC--CE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEeCCCCC----CcCcEEEEEECCHHHHHHHHHHcCC--CE
Confidence 3567999999999999999999999999 999999999987765 8899999999999999999999986 45
Q ss_pred c
Q psy5142 196 F 196 (410)
Q Consensus 196 ~ 196 (410)
+
T Consensus 107 ~ 107 (118)
T 2khc_A 107 V 107 (118)
T ss_dssp E
T ss_pred E
Confidence 5
No 80
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=3.9e-14 Score=114.49 Aligned_cols=70 Identities=20% Similarity=0.236 Sum_probs=63.9
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| |.|..|.|+++..++ .++|||||+|.+.++|++|++.+++ ..+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~A~~A~~~l~g--~~~ 79 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPF----GDITDIQIPLDYETE----KHRGFAFVEFELAEDAAAAIDNMNE--SEL 79 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTT----SCCCCEECCCCSSSC----CCSSEEEECCSSHHHHHHHHHHHTT--EEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcc----CCEEEEEEEecCCCC----CcceEEEEEECCHHHHHHHHHHhCC--CEE
Confidence 346899999999999999999999999 999999999987765 7899999999999999999998886 455
No 81
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.4e-13 Score=111.64 Aligned_cols=65 Identities=23% Similarity=0.172 Sum_probs=61.0
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhh-ccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKK-NTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~-~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
..++|||+|||+++|+++|+++|++ | |.|.+|.|+++. ++ .++|||||+|.+.++|.+|++.+++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~----G~v~~v~i~~~~-~g----~~~g~afV~f~~~~~a~~A~~~l~g 73 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVY----PSCRGGKVVLDQ-TG----VSKGYGFVKFTDELEQKRALTECQG 73 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHC----TTEEEEEEEECT-TC----CEEEEEEEEESCHHHHHHHHHHTTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhC----CCeEEEEEEECC-CC----CccceEEEEECCHHHHHHHHHHccC
Confidence 4689999999999999999999999 9 999999999988 43 7999999999999999999999886
No 82
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=9.4e-14 Score=115.05 Aligned_cols=68 Identities=19% Similarity=0.295 Sum_probs=63.1
Q ss_pred hccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 116 DLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 116 ~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
+...++|||+|||+++|+++|+++|++| |.|..|+|+++..++ .++|||||+|.+.++|++|++.+++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~Ai~~~~~ 81 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGF----GDIEEAVVITDRQTG----KSRGYGFVTMADRAAAERACKDPNP 81 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTT----SCEEEEEESCCSSSC----CCCSEEEEEESSHHHHHHHHTCSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CCeeEEEEEEcCCCC----ccceEEEEEECCHHHHHHHHHhCCC
Confidence 3567999999999999999999999999 999999999987765 8999999999999999999999883
No 83
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.46 E-value=1.5e-13 Score=120.42 Aligned_cols=69 Identities=12% Similarity=0.082 Sum_probs=63.1
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCC--ceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDV--KITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLK 195 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G--~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~ 195 (410)
..++|||+|||+++|+++|+++|++| | .|..|+|+++..++ .++|||||+|.+.++|++||+.++| ..
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~----G~i~v~~v~i~~d~~tg----~skGfaFV~f~~~~~A~~Ai~~lng--~~ 123 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSI----GVYDVVELKFAENRANG----QSKGYAEVVVASENSVHKLLELLPG--KV 123 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHT----TCCCEEEEEEEECTTTC----CEEEEEEEEESCHHHHHHHHHHSTT--CE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHH----CCccEEEEEEEecCCCC----ccceEEEEEECCHHHHHHHHHHcCC--CE
Confidence 46899999999999999999999999 9 99999999998776 8999999999999999999999986 45
Q ss_pred c
Q psy5142 196 F 196 (410)
Q Consensus 196 ~ 196 (410)
+
T Consensus 124 ~ 124 (156)
T 3n9u_C 124 L 124 (156)
T ss_dssp E
T ss_pred E
Confidence 6
No 84
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.46 E-value=7.8e-14 Score=112.70 Aligned_cols=66 Identities=12% Similarity=0.129 Sum_probs=58.3
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||.++|+++|+++|++| |.|.+|.|++ .+|+|||+|++.++|.+|++.+++..+.+
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~f----G~V~~v~i~~----------~kg~AFVef~~~~~A~~Av~~ln~~~~~i 84 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEF----GPISYVVVMP----------KKRQALVEFEDVLGACNAVNYAADNQIYI 84 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEET----------TTTEEEEEESSHHHHHHHHHHHHHSCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcc----CCEEEEEEEc----------CCCEEEEEECCHHHHHHHHHHhcCCCcee
Confidence 346899999999999999999999999 9999999873 48999999999999999999988533334
No 85
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=6.9e-14 Score=113.70 Aligned_cols=69 Identities=13% Similarity=0.239 Sum_probs=63.2
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| |.|..|.|+++..++ .++|||||+|.+.++|++|+.. ++ ..+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~v~i~~~~~~g----~~~g~afV~f~~~~~a~~a~~~-~~--~~~ 82 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQY----GEVVDCVIMKDKTTN----QSRGFGFVKFKDPNCVGTVLAS-RP--HTL 82 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTT----SCEEEEEEEECSSSC----CEEEEEEEEESSTTHHHHHHHH-CS--EEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeeCCCCC----CcceEEEEEECCHHHHHHHHHh-CC--CeE
Confidence 457899999999999999999999999 999999999987665 7899999999999999999999 75 556
No 86
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.46 E-value=1.3e-13 Score=114.57 Aligned_cols=69 Identities=17% Similarity=0.292 Sum_probs=63.1
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||.++|+++|+++|++| |.|.+|.|+++..+ .++|||||+|.+.++|++|++.++| ..+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~g-----~~~g~afV~F~~~~~A~~Ai~~l~g--~~~ 73 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKH----GPISEVLLIKDRTS-----KSRGFAFITFENPADAKNAAKDMNG--KSL 73 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTS----SCCSEEEEECSTTT-----TCCCEEEEECSSHHHHHHHHHHCSS--CBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEECCCC-----CcccEEEEEECCHHHHHHHHHHhCC--CEE
Confidence 346899999999999999999999999 99999999998843 8999999999999999999999986 455
No 87
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.46 E-value=8.9e-14 Score=121.39 Aligned_cols=77 Identities=19% Similarity=0.294 Sum_probs=69.7
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCeEEcCe
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE------PTAFVRYKKENNAEAVLKALGSKEIVIKDV 345 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~~i~g~ 345 (410)
..+.++|||.|||..+++++|+++|++|| .|..|.+.... ++|||+|.+.++|++||..| ++..|+|+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G----~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~ 109 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSG----DIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI--NGTRLDDR 109 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGS----CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHT--TTSEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC----CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHh--CCCEECCe
Confidence 45678999999999999999999999999 99999997643 36999999999999999999 67899999
Q ss_pred EEEEEecCc
Q psy5142 346 KVSIEVVTG 354 (410)
Q Consensus 346 ~v~v~~l~g 354 (410)
.|.|....+
T Consensus 110 ~l~V~~a~~ 118 (156)
T 1h2v_Z 110 IIRTDWDAG 118 (156)
T ss_dssp ECEEEEESC
T ss_pred EEEEEECCC
Confidence 999999875
No 88
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.1e-13 Score=112.08 Aligned_cols=68 Identities=24% Similarity=0.208 Sum_probs=62.2
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| |.|..|.|+++ .+ .++|||||+|.+.++|++|++.++| ..+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~-~g-----~~~g~afV~f~~~~~A~~A~~~l~g--~~~ 80 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPF----GTITSAKVMME-GG-----RSKGFGFVCFSSPEEATKAVTEMNG--RIV 80 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTT----SCEEEEEEEEC-SS-----SEEEEEEEEESSHHHHHHHHHHHTT--CBS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEcC-CC-----CcCEEEEEEECCHHHHHHHHHHhCC--CEe
Confidence 457899999999999999999999999 99999999987 33 7899999999999999999999886 455
No 89
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.45 E-value=1.5e-13 Score=115.38 Aligned_cols=70 Identities=21% Similarity=0.259 Sum_probs=64.1
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| |.|..|.|+++..++ .++|||||+|.+.++|++|++.++| ..+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g--~~~ 89 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEY----GEIKNIHLNLDRRTG----YLKGYTLVEYETYKEAQAAMEGLNG--QDL 89 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCBCTTTS----SBCSCEEEEESSHHHHHHHHHHHTT--CBS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCC----ccceEEEEEECCHHHHHHHHHHhCC--Cee
Confidence 457899999999999999999999999 999999999887665 7899999999999999999999886 455
No 90
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.45 E-value=6.3e-13 Score=104.22 Aligned_cols=74 Identities=14% Similarity=0.232 Sum_probs=69.7
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEecCc
Q psy5142 275 GALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVTG 354 (410)
Q Consensus 275 g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l~g 354 (410)
..-|+|.||++.+|+++|+++|.+|| +|..+.+...+++|||+|.++++|++|++.| ++..+.|+.|.|..++.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G----~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~L--n~~~l~gr~I~V~~A~e 80 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHG----PLVSFHPYLNQGIALCKYTTREEANKAQMAL--NNCVLANTTIFAESPSE 80 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHS----CEEEEEEETTTTEEEEEESSHHHHHHHHHHH--TTEEETTEEEEEECCCH
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhC----CEEEEEEcCCCcEEEEEECCHHHHHHHHHHh--cCCEECCcEEEEEECCH
Confidence 34688999999999999999999999 9999999999999999999999999999999 68999999999999963
No 91
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.45 E-value=5.2e-14 Score=107.09 Aligned_cols=65 Identities=18% Similarity=0.342 Sum_probs=59.3
Q ss_pred eeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 121 SLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 121 tv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
||||+|||+++|+++|+++|++| |.|.+|.|+++..++ .++|||||+|.+.++|++|++..+ ..+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~Ai~~~~---~~~ 65 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGF----GEVESIELPMDNKTN----KRRGFCFITFKEEEPVKKIMEKKY---HNV 65 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHH----SCCSEECCCCSCCCS----SSCCCEEEECSSSHHHHHHHTTSS---CCB
T ss_pred CEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCC----CcCCEEEEEECCHHHHHHHHHhCC---CeE
Confidence 69999999999999999999999 999999999887765 789999999999999999999733 455
No 92
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.45 E-value=1.6e-13 Score=116.26 Aligned_cols=70 Identities=20% Similarity=0.250 Sum_probs=64.2
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| |.|..|.|+++..++ .++|||||+|.+.++|++|++.++| ..+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~----G~I~~v~i~~d~~tg----~~~G~afV~F~~~~~A~~Ai~~lng--~~i 113 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKY----GPIADVSIVYDQQSR----RSRGFAFVYFENVDDAKEAKERANG--MEL 113 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTT----SCEEEEEEECCSSSS----CCCCEEEEEESCHHHHHHHHHHHTT--CCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCC----ccceEEEEEECCHHHHHHHHHHhCC--CEE
Confidence 346899999999999999999999999 999999999987765 7899999999999999999999886 455
No 93
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.45 E-value=1.9e-13 Score=111.40 Aligned_cols=68 Identities=16% Similarity=0.245 Sum_probs=62.5
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
..++|||+|||+.+|+++|+++|++| |.|.+|.|+++..+ .++|||||+|.+.++|++|++.++| ..+
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~g-----~~~g~afV~f~~~~~a~~A~~~l~g--~~~ 95 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEF----GTLKKAAVHYDRSG-----RSLGTADVHFERKADALKAMKQYNG--VPL 95 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEEECTTS-----CEEEEEEEEESSHHHHHHHHHHHTT--CEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECCCC-----CcceEEEEEECCHHHHHHHHHHhCC--CEe
Confidence 46899999999999999999999999 99999999988844 7899999999999999999999886 455
No 94
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.1e-13 Score=114.13 Aligned_cols=71 Identities=25% Similarity=0.314 Sum_probs=64.2
Q ss_pred hccceeeEeecCCCCCCHHHHHHHHhhccCCCCceE--------EEEEcccCcccccccccccEEEEEecCHHHHHHHHH
Q psy5142 116 DLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKIT--------NIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLN 187 (410)
Q Consensus 116 ~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~--------~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~ 187 (410)
+...++|||+|||+++|+++|+++|++| |.|. .|+|+++..++ .++|||||+|.+.++|++|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~~~~~~~v~i~~~~~~g----~~~g~afV~f~~~~~A~~Ai~ 83 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQC----GVVKMNKRTGQPMIHIYLDKETG----KPKGDATVSYEDPPTAKAAVE 83 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTT----SCBCBCSSSCCBSEECCBCTTTC----SBCSEEEEEBSSHHHHHHHHH
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhc----CCEeEccccCccCEEEEEeCCCC----CeeeEEEEEECCHHHHHHHHH
Confidence 3567999999999999999999999999 9999 69999886665 889999999999999999999
Q ss_pred hcCCCCccc
Q psy5142 188 ENKDKNLKF 196 (410)
Q Consensus 188 ~~~g~~~~~ 196 (410)
.++| ..+
T Consensus 84 ~l~g--~~~ 90 (113)
T 2cpe_A 84 WFDG--KDF 90 (113)
T ss_dssp HHTT--CEE
T ss_pred HcCC--Ccc
Confidence 9886 456
No 95
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.44 E-value=2.5e-13 Score=110.30 Aligned_cols=66 Identities=18% Similarity=0.241 Sum_probs=61.7
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
...++|||+|||+++|+++|+++|++| |.|..|.|+++..+ .++|||||+|.+.++|++|++.++|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~g-----~~~g~afV~f~~~~~A~~Ai~~l~g 78 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPF----GVIDECTVLRGPDG-----SSKGCAFVKFSSHTEAQAAIHALHG 78 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEEECSSS-----CEEEEEEEEESSHHHHHHHHHHHSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECCCC-----CcCcEEEEEeCCHHHHHHHHHHHcC
Confidence 457899999999999999999999999 99999999998754 8899999999999999999999886
No 96
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.44 E-value=1.5e-13 Score=111.27 Aligned_cols=67 Identities=25% Similarity=0.395 Sum_probs=61.3
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
..++|||+|||+++|+++|+++|++| | |..|+|+++..++ .++|||||+|.+.++|++|+ .+++ ..+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~----g-i~~v~i~~~~~~g----~~~g~afV~f~~~~~a~~A~-~l~g--~~~ 80 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDL----S-IRSVRLVRDKDTD----KFKGFCYVEFDEVDSLKEAL-TYDG--ALL 80 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTS----C-EEEEEEEECSSSC----SEEEEEEEEESSHHHHHHHG-GGTT--CEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhC----C-ceEEEEeecCCCC----ccceEEEEEECCHHHHHHHH-hhCC--CeE
Confidence 46899999999999999999999999 9 9999999988765 88999999999999999999 7775 556
No 97
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.7e-13 Score=110.92 Aligned_cols=68 Identities=21% Similarity=0.141 Sum_probs=61.5
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| |.|..|.|+++.. ..+|||||+|.+.++|++|+..+++ ..+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~------~~~g~afV~f~~~~~a~~A~~~l~g--~~~ 80 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQI----GPCKSCKMITEHT------SNDPYCFVEFYEHRDAAAALAAMNG--RKI 80 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHH----SCEEEEEEECCCC------SSCCEEEEEESSHHHHHHHHHHHTT--EEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhc----CCEeEEEEEecCC------CCCCEEEEEECCHHHHHHHHHHhCC--CCc
Confidence 457999999999999999999999999 9999999998754 3589999999999999999998886 455
No 98
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=1.4e-12 Score=106.64 Aligned_cols=75 Identities=9% Similarity=0.244 Sum_probs=69.7
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcC-----eE
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKD-----VK 346 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g-----~~ 346 (410)
....+.|||.|||+++++++|+++|++|| .|..|.+..+ ++|||+|.+.++|++||+.| ++..++| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G----~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l--~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAG----DVCYADVYRD-GTGVVEFVRKEDMTYAVRKL--DNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGS----CEEEEEEETT-TEEEEEESSHHHHHHHHHHS--SSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC----CEeEEEEecC-CEEEEEECCHHHHHHHHHHH--CcCCccCCcCcceE
Confidence 35578999999999999999999999999 9999999987 89999999999999999999 6899999 99
Q ss_pred EEEEecC
Q psy5142 347 VSIEVVT 353 (410)
Q Consensus 347 v~v~~l~ 353 (410)
|.|....
T Consensus 85 i~V~~a~ 91 (108)
T 1x4c_A 85 IRVKVDG 91 (108)
T ss_dssp EEEEESS
T ss_pred EEEEeCC
Confidence 9999875
No 99
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=3.4e-13 Score=109.40 Aligned_cols=79 Identities=13% Similarity=0.178 Sum_probs=73.0
Q ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEE
Q psy5142 271 ELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIE 350 (410)
Q Consensus 271 ~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~ 350 (410)
..++.++|||.|||+++++++|+++|++|| .|..|.+.+++++|||+|.+.++|++|++.++.++..++|+.|.|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG----~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFG----KVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTS----CEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcC----CEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 346678999999999999999999999999 9999999999999999999999999999998666789999999999
Q ss_pred ecC
Q psy5142 351 VVT 353 (410)
Q Consensus 351 ~l~ 353 (410)
...
T Consensus 87 ~a~ 89 (101)
T 2cq1_A 87 YSN 89 (101)
T ss_dssp ECS
T ss_pred EcC
Confidence 875
No 100
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.5e-13 Score=111.54 Aligned_cols=67 Identities=18% Similarity=0.326 Sum_probs=60.9
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcc-cccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDK-LANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~-~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
..++|||+|||+++|+++|+++|++| | |..|.|+++..+ + .++|||||+|.+.++|++|+ .+++ ..+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~----G-i~~v~i~~~~~~~g----~~~g~afV~f~~~~~a~~A~-~l~g--~~~ 81 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGL----N-ISAVRLPREPSNPE----RLKGFGYAEFEDLDSLLSAL-SLNE--ESL 81 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTS----C-EEEEECCBCSSCTT----SBCSCEEEEESSHHHHHHHH-GGGT--CEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHC----C-ceEEEEecCCCCCC----CcCeEEEEEECCHHHHHHHH-hcCC--CEe
Confidence 46899999999999999999999999 9 999999998775 4 88999999999999999999 7775 455
No 101
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.44 E-value=7.5e-14 Score=110.14 Aligned_cols=66 Identities=21% Similarity=0.340 Sum_probs=61.4
Q ss_pred eeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 120 QSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 120 rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
++|||+|||.++|+++|+++|++| |.|.+|.|+++..++ .++|||||+|.+.+ |.+|+..++| ..+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~----~~~g~afV~f~~~~-a~~a~~~l~g--~~~ 67 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQF----GKVFNVKLIYDRETK----KPKGFGFVEMQEES-VSEAIAKLDN--TDF 67 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHH----TCCSEEEECCCSSSC----CCCEEEEEEECTTH-HHHHHHTSCS--SCC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhc----CCEEEEEEEEcCCCC----CcceEEEEEECCHH-HHHHHHHhCC--CEE
Confidence 789999999999999999999999 999999999988765 88999999999999 9999999986 455
No 102
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.44 E-value=2.8e-13 Score=107.17 Aligned_cols=67 Identities=25% Similarity=0.278 Sum_probs=60.6
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
..++|||+|||.++|+++|+++|++| |.|..|.|+++ ++ .++|||||+|.+.++|++|++.+++ ..+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~----G~v~~~~i~~~--~g----~~~g~afV~f~~~~~a~~a~~~l~g--~~~ 73 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNEC----GHVLYADIKME--NG----KSKGCGVVKFESPEVAERACRMMNG--MKL 73 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTT----SCEEEEEEEES--SS----CEEEEEEEEESSHHHHHHHHHHHTT--CCB
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEcc--CC----CcceEEEEEECCHHHHHHHHHHhCC--CEE
Confidence 46899999999999999999999999 99999999873 32 7899999999999999999999886 455
No 103
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=2.9e-13 Score=109.97 Aligned_cols=78 Identities=14% Similarity=0.151 Sum_probs=72.2
Q ss_pred CCCCeEEEEeCCCC-CCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEE
Q psy5142 272 LPTGALLKISDIKE-PVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIE 350 (410)
Q Consensus 272 ~~~g~~l~v~nL~~-~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~ 350 (410)
..+.++|||.|||+ ++++++|+++|++|| .|..|.+.++.++|||+|.+.++|.+|++.|++.+..++|+.|.|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG----~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFG----VISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGS----CEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcC----CEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 35678999999999 999999999999999 9999999998899999999999999999999766788999999999
Q ss_pred ecC
Q psy5142 351 VVT 353 (410)
Q Consensus 351 ~l~ 353 (410)
...
T Consensus 88 ~a~ 90 (102)
T 1x4d_A 88 LSQ 90 (102)
T ss_dssp EEC
T ss_pred ECC
Confidence 875
No 104
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.6e-13 Score=109.88 Aligned_cols=68 Identities=24% Similarity=0.265 Sum_probs=61.6
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| |.|..|.|+++.. .++|||||+|.+.++|++|+..+++ ..+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~------~~~g~afV~f~~~~~a~~A~~~l~g--~~~ 80 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQF----GKILDVEIIFNER------GSKGFGFVTFENSADADRAREKLHG--TVV 80 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGT----SCEEEEEEECCTT------TTCCEEEEEESCHHHHHHHHHHHTT--CEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCC------CCcEEEEEEECCHHHHHHHHHHhCC--CEE
Confidence 457999999999999999999999999 9999999988754 4799999999999999999999886 455
No 105
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.1e-13 Score=110.96 Aligned_cols=68 Identities=21% Similarity=0.304 Sum_probs=60.5
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEE-EEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITN-IIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLK 195 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~-v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~ 195 (410)
...++|||+|||+++|+++|+++|++| |.|.. |+|+++..+ +++|||||+|.++++|++||.. ++ ..
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~----G~v~~~v~i~~~~~g-----~~~G~afV~F~~~~~a~~A~~~-~~--~~ 80 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGL----EIVPNGMTLPVDFQG-----RSTGEAFVQFASQEIAEKALKK-HK--ER 80 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTC----CEEEEEEECCBCSSS-----CBCSEEEEEESSHHHHHHHHTT-TT--CC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCcceeEEEEECCCC-----CcceEEEEEECCHHHHHHHHHh-Cc--ch
Confidence 346899999999999999999999999 99998 999888444 8999999999999999999998 64 44
Q ss_pred c
Q psy5142 196 F 196 (410)
Q Consensus 196 ~ 196 (410)
+
T Consensus 81 ~ 81 (104)
T 1wg5_A 81 I 81 (104)
T ss_dssp S
T ss_pred h
Confidence 5
No 106
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=2.2e-13 Score=112.25 Aligned_cols=69 Identities=14% Similarity=0.180 Sum_probs=63.0
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| |.|.+|.|+++..+ .++|||||+|.+.++|++|++.+++ ..+
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~----G~i~~~~i~~~~~g-----~~~g~afV~f~~~~~a~~A~~~l~g--~~~ 81 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMA----GVVVRADILEDKDG-----KSRGIGTVTFEQSIEAVQAISMFNG--QLL 81 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEEECTTC-----SEEEEEEEEESSHHHHHHHHHHHTT--CEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECCCC-----CeeeEEEEEECCHHHHHHHHHHhCC--CEe
Confidence 346899999999999999999999999 99999999988764 8899999999999999999998886 455
No 107
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=2.1e-13 Score=111.20 Aligned_cols=65 Identities=18% Similarity=0.253 Sum_probs=57.2
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
..++|||+|||+++|+++|+++|++| |.|.+|.|++ .+|||||+|.+.++|.+|++.+++....+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~f----G~V~~v~i~~----------~kg~aFVef~~~~~A~~Ai~~l~~~~~~i 78 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKF----GTICYVMMMP----------FKRQALVEFENIDSAKECVTFAADVPVYI 78 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTT----SCEEEEEEET----------TTTEEEEEESSHHHHHHHHHHHHHSCCBS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEEC----------CCCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 35899999999999999999999999 9999999874 37999999999999999999876433345
No 108
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=7.7e-14 Score=113.39 Aligned_cols=65 Identities=9% Similarity=0.059 Sum_probs=57.2
Q ss_pred cceeeEeecCCC-CCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 118 IAQSLYVKYIPV-DATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 118 ~~rtv~V~~lp~-~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
..++|||+|||+ ++|+++|+++|++| |.|.+|.|++ .+|||||+|++.++|.+|++.+++....+
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~f----G~V~~v~i~~----------~kg~aFVef~~~~~A~~Ai~~l~~~~~~~ 79 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPF----GVISNHLILN----------KINEAFIEMATTEDAQAAVDYYTTTPALV 79 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGG----SCEEEEEECS----------SSSCEEEEESSHHHHHHHHHHHHHSCCEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhc----CCEEEEEEEc----------CCCEEEEEECCHHHHHHHHHHHcCCCceE
Confidence 358999999999 99999999999999 9999999974 36899999999999999999887532345
No 109
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.43 E-value=7.9e-13 Score=106.74 Aligned_cols=76 Identities=13% Similarity=0.314 Sum_probs=68.5
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCeEEcCe
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE------PTAFVRYKKENNAEAVLKALGSKEIVIKDV 345 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~~i~g~ 345 (410)
+..|+.|||.|||+++|+++|+++|++|| .|..|.+.++. ++|||+|.++++|++|++.| ++..++|+
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G----~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~l--ng~~~~gr 89 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIG----EVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL--NGLRLQSK 89 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTS----CEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcC----CEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHh--CCCEECCE
Confidence 55688999999999999999999999999 99999987643 26999999999999999999 67999999
Q ss_pred EEEEEecC
Q psy5142 346 KVSIEVVT 353 (410)
Q Consensus 346 ~v~v~~l~ 353 (410)
.|.|....
T Consensus 90 ~l~V~~Ak 97 (99)
T 4fxv_A 90 TIKVSYAR 97 (99)
T ss_dssp ECEEEECC
T ss_pred EEEEEEee
Confidence 99998764
No 110
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=2.6e-13 Score=110.95 Aligned_cols=66 Identities=20% Similarity=0.255 Sum_probs=60.2
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCc-eEEEEEc-ccCcccccccccccEEEEEecCHHHHHHHHHhcC
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVK-ITNIIMR-NYQDKLANQKKFKGSIFVTFDNKENAEKFLNENK 190 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~-I~~v~l~-~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~ 190 (410)
...++|||+|||+++|+++|+++|++| |. |.+|.|+ ++..++ .++|||||+|.+.++|.+|+..++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~----G~~v~~v~i~~~~~~~g----~~~g~afV~f~~~~~A~~A~~~l~ 73 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKV----TEGVLDVIVYASAADKM----KNRGFAFVEYESHRAAAMARRKLM 73 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHH----STTEEEEECCSSSCTTT----TTCCEEEEEESSHHHHHHHHTTTT
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHh----cCCceEEEEEccCCCCC----CcCcEEEEEecCHHHHHHHHHHhh
Confidence 346899999999999999999999999 98 9999998 666654 789999999999999999999885
No 111
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=4.7e-13 Score=109.15 Aligned_cols=79 Identities=16% Similarity=0.262 Sum_probs=72.6
Q ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEE
Q psy5142 271 ELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIE 350 (410)
Q Consensus 271 ~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~ 350 (410)
..++..+|||.|||+++++++|+++|++|| .|..|.+.+++++|||+|.+.++|.+|++.|+..++.++|+.|.|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG----~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFG----TICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTS----CEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCC----CEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 346678999999999999999999999999 9999999999999999999999999999999766778999999999
Q ss_pred ecC
Q psy5142 351 VVT 353 (410)
Q Consensus 351 ~l~ 353 (410)
...
T Consensus 87 ~a~ 89 (104)
T 1wex_A 87 YST 89 (104)
T ss_dssp ECS
T ss_pred Ecc
Confidence 865
No 112
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.43 E-value=8.2e-14 Score=110.99 Aligned_cols=69 Identities=22% Similarity=0.353 Sum_probs=61.8
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
..++|||+|||+++|+++|+++|++| |.|..+.++.+..++ .++|||||+|.+.++|++|++.+++ ..+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~~~~~~~~~~g----~~~g~afV~f~~~~~a~~Ai~~l~g--~~~ 82 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGY----QVIPGSVCLKYNEKG----MPTGEAMVAFESRDEATAAVIDLND--RPI 82 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTS----CBCTTCCEEEECTTS----CEEEEEEEEESSHHHHHHHHHHHTT--CEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CCccceEEEEeCCCC----CEeeEEEEEECCHHHHHHHHHHhCC--CeE
Confidence 35899999999999999999999999 999988888776665 7899999999999999999998886 455
No 113
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.42 E-value=2.3e-13 Score=116.27 Aligned_cols=71 Identities=17% Similarity=0.319 Sum_probs=64.8
Q ss_pred hccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcc
Q psy5142 116 DLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLK 195 (410)
Q Consensus 116 ~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~ 195 (410)
....++|||+|||.++|+++|+++|+.| |.|.+|.|+++..++ .++|||||+|.+.++|.+|++.++| ..
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~----G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g--~~ 108 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERY----GPIESVKIVCDRETR----QSRGYGFVKFQSGSSAQQAIAGLNG--FN 108 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHH----SCEEEEEEEEETTTT----EEEEEEEEEESSHHHHHHHHHHTTT--EE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEEcCCCC----CcceEEEEEECCHHHHHHHHHHhCC--CE
Confidence 3567999999999999999999999999 999999999987765 7899999999999999999999886 45
Q ss_pred c
Q psy5142 196 F 196 (410)
Q Consensus 196 ~ 196 (410)
+
T Consensus 109 ~ 109 (139)
T 1u6f_A 109 I 109 (139)
T ss_dssp C
T ss_pred E
Confidence 5
No 114
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2.5e-13 Score=110.00 Aligned_cols=64 Identities=22% Similarity=0.277 Sum_probs=59.8
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHh
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNE 188 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~ 188 (410)
...++|||+|||+++|+++|+++|++| |.|..|.|+++..++ .++|||||+|.+.++|++|+..
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g----~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTF----GEVLMVQVKKDLKTG----HSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGG----SCEEEEEEEECSSSC----SEEEEEEEEESSHHHHHHHHHS
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhc----CCeEEEEEEecCCCC----CccceEEEEECCHHHHHHHHHc
Confidence 456899999999999999999999999 999999999987765 8999999999999999999985
No 115
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=9.5e-14 Score=114.93 Aligned_cols=68 Identities=18% Similarity=0.148 Sum_probs=61.6
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCce-EEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKI-TNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLK 195 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I-~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~ 195 (410)
...++|||+|||+++|+++|+++|++| |.| ..|+|+++..+ .++|||||+|.+.++|++||+. ++ ..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----g~v~~~v~i~~d~~g-----~~~G~afV~F~~~~~a~~Al~~-~~--~~ 80 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGI----PVDENAVHVLVDNNG-----QGLGQALVQFKNEDDARKSERL-HR--KK 80 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTS----CCCSTTEEECCCTTS-----SCSSCEEEECSSHHHHHHHGGG-CS--EE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhC----CCcCCeEEEEECCCC-----CcceEEEEEECCHHHHHHHHHh-CC--Cc
Confidence 456899999999999999999999999 999 89999998843 8999999999999999999998 64 45
Q ss_pred c
Q psy5142 196 F 196 (410)
Q Consensus 196 ~ 196 (410)
+
T Consensus 81 ~ 81 (114)
T 2cpy_A 81 L 81 (114)
T ss_dssp E
T ss_pred c
Confidence 5
No 116
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.42 E-value=3.5e-13 Score=117.56 Aligned_cols=70 Identities=24% Similarity=0.290 Sum_probs=64.4
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| |.|..|.|+++..++ .++|||||+|.+.++|++||+.+++ ..+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g--~~~ 106 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKS----GDIKKIIMGLDKMKK----TACGFCFVEYYSRADAENAMRYING--TRL 106 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTC----CEEEEEEEEESSHHHHHHHHHHTTT--SEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCC----ccceEEEEEECCHHHHHHHHHHhCC--CEE
Confidence 457899999999999999999999999 999999999988765 7899999999999999999999886 455
No 117
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=1.5e-13 Score=112.76 Aligned_cols=70 Identities=23% Similarity=0.257 Sum_probs=62.9
Q ss_pred hhccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCc
Q psy5142 115 KDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNL 194 (410)
Q Consensus 115 ~~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~ 194 (410)
.....++|||+|||.++|+++|+++|++| |.|.+|.|+++.. .++|||||+|.+.++|++|++.++| .
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~~------~~kg~afV~f~~~~~A~~Ai~~l~g--~ 92 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQF----GKILDVEIIFNER------GSKGFGFVTFENSADADRAREKLHG--T 92 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGT----CCCSCEEECCBTT------BCTTEEEEECCCSHHHHHHHHHHTT--C
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhc----CCEEEEEEEECCC------CCceEEEEEECCHHHHHHHHHHcCC--C
Confidence 34678999999999999999999999999 9999999988743 5799999999999999999999886 4
Q ss_pred cc
Q psy5142 195 KF 196 (410)
Q Consensus 195 ~~ 196 (410)
.+
T Consensus 93 ~~ 94 (109)
T 2err_A 93 VV 94 (109)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 118
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.42 E-value=1.4e-13 Score=111.12 Aligned_cols=69 Identities=17% Similarity=0.310 Sum_probs=59.6
Q ss_pred hccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccC-cccccccccccEEEEEecCHHHHHHHHHhcCCCCc
Q psy5142 116 DLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQ-DKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNL 194 (410)
Q Consensus 116 ~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~-~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~ 194 (410)
....++|||+|||+++|+++|+++|++| | |.+|+|+++. .++ .++|||||+|.+.++|.+|+ .++| .
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G-i~~v~i~~~~~~~g----~~~g~afV~f~~~~~a~~Ai-~l~g--~ 83 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGL----N-ISAVRLPREPSNPE----RLKGFGYAEFEDLDSLLSAL-SLNE--E 83 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSS----C-EEEEECSCCTTTTC----CCCSCEEEEECCHHHHHHHH-HTTT--C
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc----C-CeEEEEEecCCcCC----ccCeEEEEEECCHHHHHHHH-hcCC--C
Confidence 3567999999999999999999999999 9 9999999887 344 89999999999999999999 7775 4
Q ss_pred cc
Q psy5142 195 KF 196 (410)
Q Consensus 195 ~~ 196 (410)
.+
T Consensus 84 ~~ 85 (100)
T 2j76_E 84 SL 85 (100)
T ss_dssp CB
T ss_pred EE
Confidence 56
No 119
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=3.3e-13 Score=111.26 Aligned_cols=65 Identities=15% Similarity=0.181 Sum_probs=58.8
Q ss_pred hccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcc
Q psy5142 116 DLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLK 195 (410)
Q Consensus 116 ~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~ 195 (410)
+...++|||+|||+++|+++|+++|++| |.|..|.|+ ..+|||||+|.+.++|++|+..++| ..
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~----G~i~~v~i~----------~~~g~afV~f~~~~~A~~Ai~~l~g--~~ 70 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRF----GSLGRVLLP----------EGGITAIVEFLEPLEARKAFRHLAY--SK 70 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTT----SCEEEEECC----------SSSSCEEEEESCHHHHHHHHHHHTT--CB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEe----------CCCCEEEEEeCCHHHHHHHHHHhCC--CE
Confidence 3557899999999999999999999999 999999987 3578999999999999999999986 45
Q ss_pred c
Q psy5142 196 F 196 (410)
Q Consensus 196 ~ 196 (410)
+
T Consensus 71 ~ 71 (111)
T 1whx_A 71 F 71 (111)
T ss_dssp S
T ss_pred E
Confidence 5
No 120
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.42 E-value=3.3e-13 Score=109.74 Aligned_cols=67 Identities=24% Similarity=0.276 Sum_probs=62.9
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
...++|||+|||.++|+++|+++|++| |.|..|+|+++..++ .++|||||+|.+.++|.+|++.+++
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g----~~~g~afV~f~~~~~A~~A~~~l~g 77 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEF----GKIYELTVLKDRFTG----MHKGCAFLTYCERESALKAQSALHE 77 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHH----SCCCEEECCCCSSSC----SCCSEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEEecCCCC----CcceEEEEEECCHHHHHHHHHHhcC
Confidence 457999999999999999999999999 999999999988765 8899999999999999999999886
No 121
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.42 E-value=3.2e-13 Score=115.18 Aligned_cols=70 Identities=20% Similarity=0.236 Sum_probs=64.3
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||.++|+++|+++|++| |.|..|+|+++..++ .++|||||+|.+.++|++|++.++| ..+
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~----G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g--~~~ 130 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPF----GDITDIQIPLDYETE----KHRGFAFVEFELAEDAAAAIDNMNE--SEL 130 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGG----SCEEEEECCCCTTTC----CCCSEEEEEESCHHHHHHHHHHSTE--EEE
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhc----CCEEEEEEeecCCCC----CcCcEEEEEECCHHHHHHHHHHhCC--CEE
Confidence 457999999999999999999999999 999999999987665 8899999999999999999999886 455
No 122
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=1.9e-13 Score=114.03 Aligned_cols=60 Identities=20% Similarity=0.324 Sum_probs=55.2
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
..++|||+|||+++|+++|+++|++| |.|.+|+|++ .+|||||+|.+.++|.+|++.+++
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~f----G~V~~v~i~~----------~kG~AFVeF~~~e~A~~Ai~~l~~ 89 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPF----GKVTNLLMLK----------GKNQAFIEMNTEEAANTMVNYYTS 89 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTT----SCCCEEEEEG----------GGTEEEEECSCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEeC----------CCCEEEEEECCHHHHHHHHHHhcc
Confidence 35899999999999999999999999 9999999974 379999999999999999998763
No 123
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.8e-13 Score=113.28 Aligned_cols=70 Identities=13% Similarity=0.285 Sum_probs=63.5
Q ss_pred hccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcc
Q psy5142 116 DLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLK 195 (410)
Q Consensus 116 ~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~ 195 (410)
....++|||+|||+++|+++|+++|++| |.|..|.|+++..++ .++|||||+|.+.++|++|+.. ++ ..
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~~~g----~~~g~afV~f~~~~~a~~Ai~~-~~--~~ 92 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQW----GKLTDCVVMRDPASK----RSRGFGFVTFSSMAEVDAAMAA-RP--HS 92 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSS----CCCSEEEEECCTTTS----SCCSEEEEECSSHHHHHHHHTS-CS--EE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEECCCCC----CcCceEEEEeCCHHHHHHHHHh-CC--cE
Confidence 3567999999999999999999999999 999999999987765 7899999999999999999998 64 45
Q ss_pred c
Q psy5142 196 F 196 (410)
Q Consensus 196 ~ 196 (410)
+
T Consensus 93 ~ 93 (116)
T 1x4b_A 93 I 93 (116)
T ss_dssp E
T ss_pred E
Confidence 6
No 124
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=1.1e-13 Score=110.90 Aligned_cols=70 Identities=21% Similarity=0.333 Sum_probs=62.4
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| |.|..+.++++..++ .++|||||+|.+.++|++|++.++| ..+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~----G~v~~~~~~~~~~~g----~~~g~afV~f~~~~~a~~Ai~~l~g--~~~ 82 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGY----QVIPGSVCLKYNEKG----MPTGEAMVAFESRDEATAAVIDLND--RPI 82 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTS----CCCTTTCEEEECSSS----CEEEEEEEEESCHHHHHHHHHHTTT--CEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHc----CCccceEEEEECCCC----CeeeEEEEEECCHHHHHHHHHHhCC--Cee
Confidence 346899999999999999999999999 999988877776665 7899999999999999999999986 455
No 125
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=2.2e-13 Score=110.52 Aligned_cols=65 Identities=20% Similarity=0.220 Sum_probs=56.6
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
..++|||+|||+++|+++|+++|++| |.|.+|.|++ .+|||||+|.+.++|.+|++.+++....+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~f----G~v~~v~i~~----------~kg~aFVef~~~~~A~~Ai~~l~~~~~~~ 78 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPF----GKVTNILMLK----------GKNQAFLELATEEAAITMVNYYSAVTPHL 78 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTT----SCEEEEEEET----------TTTEEEEEESSHHHHHHHHHHHHHSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEC----------CCCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 45899999999999999999999999 9999999874 38999999999999999999765322345
No 126
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=4.2e-13 Score=109.84 Aligned_cols=67 Identities=25% Similarity=0.348 Sum_probs=60.0
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| |.|..|.|+.+. .++|||||+|.+.++|++|++.+++ ..+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~v~~~~i~~~~-------~~~g~afV~f~~~~~A~~A~~~l~g--~~~ 86 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKY----GAIRDIDLKNRR-------GGPPFAFVEFEDPRDAEDAVYGRDG--YDY 86 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEECCSS-------SSSCCEEEEESCHHHHHHHHHHHTT--CEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECC-------CCCcEEEEEECCHHHHHHHHHHcCC--CEE
Confidence 457899999999999999999999999 999999996532 5799999999999999999999886 455
No 127
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.41 E-value=1.4e-13 Score=114.76 Aligned_cols=68 Identities=10% Similarity=0.284 Sum_probs=61.7
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCc---eEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCC
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVK---ITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKN 193 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~---I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~ 193 (410)
...++|||+|||+++|+++|+++|+.| |. |..|+|+++..+ +++|||||+|.+.++|++||+ +++
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~----G~~~~v~~v~i~~~~~g-----~~~G~afV~F~~~~~a~~Al~-~~g-- 82 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDC----TIHDGVAGVHFIYTREG-----RQSGEAFVELESEDDVKLALK-KDR-- 82 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTS----CBTTGGGGEEEEECSSS-----CEEEEEEEEBSSHHHHHHHGG-GTT--
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHc----CCccCceeEEEEECCCC-----CCCeEEEEEECCHHHHHHHHh-cCC--
Confidence 356899999999999999999999999 99 899999988774 899999999999999999999 675
Q ss_pred ccc
Q psy5142 194 LKF 196 (410)
Q Consensus 194 ~~~ 196 (410)
..+
T Consensus 83 ~~~ 85 (118)
T 2db1_A 83 ESM 85 (118)
T ss_dssp EEE
T ss_pred CeE
Confidence 455
No 128
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.41 E-value=5.1e-13 Score=110.76 Aligned_cols=74 Identities=9% Similarity=0.263 Sum_probs=64.7
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeE-----E
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVK-----V 347 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~-----v 347 (410)
...+.|||.|||+++++++|+++|++|| .|..|.+..+ ++|||+|.+.++|++||+.| ++..|+|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G----~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l--~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAG----DVCYADVYRD-GTGVVEFVRKEDMTYAVRKL--DNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGS----CEEEEEECTT-SEEEEEESSHHHHHHHHHHH--TTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC----CeEEEEEecC-CEEEEEECCHHHHHHHHHHh--CCCEECCcEeeeEEE
Confidence 3468899999999999999999999999 9999999887 89999999999999999999 678899987 6
Q ss_pred EEEecC
Q psy5142 348 SIEVVT 353 (410)
Q Consensus 348 ~v~~l~ 353 (410)
++....
T Consensus 87 ~v~~~~ 92 (115)
T 3beg_B 87 RVKVDG 92 (115)
T ss_dssp EEEECC
T ss_pred EeccCC
Confidence 666543
No 129
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=2.9e-13 Score=112.97 Aligned_cols=79 Identities=13% Similarity=0.179 Sum_probs=72.2
Q ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEE
Q psy5142 271 ELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIE 350 (410)
Q Consensus 271 ~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~ 350 (410)
..++.++|||.|||+++++++|+++|++|| .|..|.+.+++++|||+|.+.++|.+|++.++..+..++|+.|.|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG----~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFG----KVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTS----CCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcC----CEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 345678999999999999999999999999 9999999998899999999999999999999644678999999999
Q ss_pred ecC
Q psy5142 351 VVT 353 (410)
Q Consensus 351 ~l~ 353 (410)
...
T Consensus 103 ~a~ 105 (119)
T 2ad9_A 103 FSN 105 (119)
T ss_dssp ECS
T ss_pred Ecc
Confidence 875
No 130
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=4e-13 Score=107.56 Aligned_cols=66 Identities=15% Similarity=0.196 Sum_probs=59.8
Q ss_pred cceeeEeecCCCCCCHHHHH----HHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCC
Q psy5142 118 IAQSLYVKYIPVDATLDDIK----DFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKN 193 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~----~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~ 193 (410)
..++|||+|||+++|+++|+ ++|++| |.|.+|+|+++..+ +|||||+|.+.++|++|++.++|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~----G~v~~v~i~~~~~~-------rg~afV~f~~~~~A~~Ai~~l~g-- 74 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARH----GKVKSVELSPHTDY-------QLKAVVQMENLQDAIGAVNSLHR-- 74 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHH----SCEEEEEECSCCST-------TCCEEEEESSHHHHHHHHHHHTT--
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhcccc----CcEEEEEEEeCCCC-------CeEEEEEECCHHHHHHHHHHhCC--
Confidence 35899999999999999999 999999 99999999987643 88999999999999999999986
Q ss_pred ccc
Q psy5142 194 LKF 196 (410)
Q Consensus 194 ~~~ 196 (410)
..+
T Consensus 75 ~~~ 77 (96)
T 2dgx_A 75 YKI 77 (96)
T ss_dssp EEE
T ss_pred CEE
Confidence 456
No 131
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.8e-13 Score=111.19 Aligned_cols=67 Identities=19% Similarity=0.274 Sum_probs=58.7
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| |. ..|+|+++..+ +++|||||+|.+.++|++||+. ++ ..+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~----G~-~~v~i~~d~~g-----~~~G~afV~F~~~~~a~~Al~~-~~--~~~ 79 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPL----NP-MRVHIEIGPDG-----RVTGEADVEFATHEDAVAAMAK-DK--ANM 79 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSC----CC-SEEEEEESSSS-----CEEEEEEEECSSSHHHHHHHTT-SS--CCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHc----Cc-eEEEEEECCCC-----CEeeEEEEEECCHHHHHHHHHh-CC--CeE
Confidence 346899999999999999999999999 95 49999998744 8999999999999999999964 64 445
No 132
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.40 E-value=2.4e-12 Score=109.84 Aligned_cols=76 Identities=14% Similarity=0.261 Sum_probs=68.3
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCe
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDV 345 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~ 345 (410)
....+.|||.|||.++++++|+++|++|| .|..|.+..+ .++|||+|.+.++|.+|+..| ++..++|+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~ 112 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYG----PIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGL--NGFNILNK 112 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHS----CEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHT--TTEECSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC----CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHh--CCCEECCe
Confidence 45568999999999999999999999999 9999988754 246999999999999999999 68999999
Q ss_pred EEEEEecC
Q psy5142 346 KVSIEVVT 353 (410)
Q Consensus 346 ~v~v~~l~ 353 (410)
.|.|....
T Consensus 113 ~l~v~~a~ 120 (139)
T 1u6f_A 113 RLKVALAA 120 (139)
T ss_dssp EEEEEESS
T ss_pred EEEEEECC
Confidence 99999865
No 133
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.40 E-value=4.3e-13 Score=105.15 Aligned_cols=63 Identities=10% Similarity=0.086 Sum_probs=58.0
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
....|||+||++.+|+++|+++|.+| |+|.++++. .++|||||+|.++++|.+|++.+|+ .++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~----G~V~~~~l~----------~~kGfaFVey~~~~eA~~Ai~~Ln~--~~l 68 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQH----GPLVSFHPY----------LNQGIALCKYTTREEANKAQMALNN--CVL 68 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHH----SCEEEEEEE----------TTTTEEEEEESSHHHHHHHHHHHTT--EEE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhh----CCEEEEEEc----------CCCcEEEEEECCHHHHHHHHHHhcC--CEE
Confidence 45689999999999999999999999 999999985 4699999999999999999999996 556
No 134
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=1.7e-13 Score=113.10 Aligned_cols=65 Identities=18% Similarity=0.337 Sum_probs=57.1
Q ss_pred cceeeEeecCCCC-CCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 118 IAQSLYVKYIPVD-ATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 118 ~~rtv~V~~lp~~-~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
..++|||+|||++ +|+++|+++|++| |.|.+|+|. +.+|||||+|.+.++|.+|++.+++....+
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~f----G~V~~v~i~----------~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l 89 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPY----GKIKNYILM----------RMKSQAFIEMETREDAMAMVDHCLKKALWF 89 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTT----SCCSEEEEE----------TTTTEEEEECSSHHHHHHHHHHHHHSCCCS
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhc----CCEEEEEEe----------cCCCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 3689999999998 9999999999999 999999996 358999999999999999999876422345
No 135
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.39 E-value=2e-13 Score=116.85 Aligned_cols=67 Identities=10% Similarity=0.272 Sum_probs=61.3
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCc---eEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVK---ITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNL 194 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~---I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~ 194 (410)
..++|||+|||+++|+++|+++|++| |. |..|+|+++..+ +++|||||+|.+.++|++|++ +++ .
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~----G~v~~v~~v~i~~d~~g-----~srG~aFV~F~~~e~a~~Al~-~~g--~ 110 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDC----TIHDGAAGVHFIYTREG-----RQSGEAFVELGSEDDVKMALK-KDR--E 110 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTC----CCSSSSTTEEEEECSSS-----CEEEEEEEECSSHHHHHHHHT-TTE--E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHh----CCcCceeEEEEEECCCC-----CCCeEEEEEECCHHHHHHHHh-cCC--C
Confidence 46899999999999999999999999 99 899999998874 899999999999999999999 775 4
Q ss_pred cc
Q psy5142 195 KF 196 (410)
Q Consensus 195 ~~ 196 (410)
.+
T Consensus 111 ~l 112 (136)
T 2hgl_A 111 SM 112 (136)
T ss_dssp ES
T ss_pred EE
Confidence 45
No 136
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.39 E-value=1.8e-13 Score=116.02 Aligned_cols=66 Identities=11% Similarity=0.183 Sum_probs=61.6
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEE--EEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITN--IIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~--v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
...++|||+|||+++|+++|+++|++| |.|.. |+|++++.++ .++|||||+|.+. +|.+|+..++|
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~----G~v~~~~v~i~~d~~tg----~~rG~aFV~f~~~-~a~~Ai~~l~g 88 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPY----AVLSSSNVRVIKDKQTQ----LNRGFAFIQLSTI-EAAQLLQILQA 88 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGG----CCCCTTTEECCBCSSSS----SBCSCEEEECCHH-HHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh----CCcceeeEEEEEcCCCC----CcceEEEEEECCH-HHHHHHHHhcC
Confidence 557899999999999999999999999 99977 9999998765 8999999999999 99999999996
No 137
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.39 E-value=3.5e-13 Score=109.79 Aligned_cols=68 Identities=25% Similarity=0.297 Sum_probs=60.4
Q ss_pred ccceeeEeecCCCCC------CHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcC
Q psy5142 117 LIAQSLYVKYIPVDA------TLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENK 190 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~------t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~ 190 (410)
...++|||+|||+.+ |+++|+++|++| |.|.+|.|++ .++ .++|||||+|.+.++|++|+..++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~----G~v~~v~i~~--~~g----~~~G~afV~f~~~~~A~~Ai~~l~ 82 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF----GKITNDFYPE--EDG----KTKGYIFLEYASPAHAVDAVKNAD 82 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGG----SCEEEEECCC--BTT----BSCCEEEEEECSSSHHHHHHHHCS
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcC----CCEEEEEeeC--CCC----CeeeEEEEEECCHHHHHHHHHHhC
Confidence 346899999999999 789999999999 9999999983 333 789999999999999999999999
Q ss_pred CCCccc
Q psy5142 191 DKNLKF 196 (410)
Q Consensus 191 g~~~~~ 196 (410)
| ..+
T Consensus 83 g--~~~ 86 (105)
T 2nlw_A 83 G--YKL 86 (105)
T ss_dssp S--EEC
T ss_pred C--ccc
Confidence 6 456
No 138
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.39 E-value=2.3e-13 Score=111.31 Aligned_cols=68 Identities=16% Similarity=0.271 Sum_probs=61.4
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCc---eEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCC
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVK---ITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKN 193 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~---I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~ 193 (410)
...++|||+|||+++|+++|+++|+.| |. |..|+|+++..+ +++|||||+|.+.++|++||. +++
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~----g~~~~v~~v~i~~~~~g-----~~~G~afV~F~~~~~a~~Al~-~~~-- 76 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDC----RIRNGENGIHFLLNRDG-----KRRGDALIEMESEQDVQKALE-KHR-- 76 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTS----CBTTTTTTEECCCCTTS-----TTCSEEEEEBSSHHHHHHHHT-TTT--
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhc----CCcCCcceEEEEECCCC-----CEeeEEEEEECCHHHHHHHHH-hCc--
Confidence 456899999999999999999999999 88 999999988874 899999999999999999999 664
Q ss_pred ccc
Q psy5142 194 LKF 196 (410)
Q Consensus 194 ~~~ 196 (410)
..+
T Consensus 77 ~~~ 79 (107)
T 2lmi_A 77 MYM 79 (107)
T ss_dssp CCS
T ss_pred cee
Confidence 445
No 139
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=7.4e-13 Score=103.14 Aligned_cols=64 Identities=20% Similarity=0.272 Sum_probs=57.6
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhc-CCCCcc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNEN-KDKNLK 195 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~-~g~~~~ 195 (410)
...++|||+|||.++|+++|+++|++| |.|.+|.+++ .+|||||+|.+.++|.+|++.+ ++ ..
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~----G~i~~~~~~~----------~kg~afV~f~~~~~A~~a~~~l~~~--~~ 73 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQF----GEIRTITVVQ----------RQQCAFIQFATRQAAEVAAEKSFNK--LI 73 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTT----SCEEEEEEEG----------GGTEEEEEESSHHHHHHHHHTTTTT--CE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhC----CCEeEEEEEC----------CCCEEEEEECCHHHHHHHHHHhcCC--ee
Confidence 456899999999999999999999999 9999999974 4799999999999999999987 64 44
Q ss_pred c
Q psy5142 196 F 196 (410)
Q Consensus 196 ~ 196 (410)
+
T Consensus 74 ~ 74 (85)
T 2ytc_A 74 V 74 (85)
T ss_dssp E
T ss_pred E
Confidence 5
No 140
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.39 E-value=2.9e-13 Score=115.60 Aligned_cols=70 Identities=19% Similarity=0.278 Sum_probs=64.1
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| |.|..|.|+++..++ .++|||||+|.+.++|++|+..++| ..+
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~----G~i~~v~i~~~~~~g----~~~G~afV~F~~~~~A~~Ai~~l~g--~~i 114 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKY----GRVGDVYIPRDRYTK----ESRGFAFVRFHDKRDAEDAMDAMDG--AVL 114 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGG----SCCSEEECCCCSSSS----SCCSCCEEECSCHHHHHHHHTTTTT--CCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEecCCCC----ccceEEEEEECCHHHHHHHHHHcCC--CEE
Confidence 457899999999999999999999999 999999999887665 8999999999999999999999886 445
No 141
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=2.5e-13 Score=111.86 Aligned_cols=73 Identities=15% Similarity=0.221 Sum_probs=63.0
Q ss_pred ccceeeEeecCCCCCCHHHHH---HHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCC
Q psy5142 117 LIAQSLYVKYIPVDATLDDIK---DFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKN 193 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~---~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~ 193 (410)
...++|||+|||+++|+++|+ ++|++| |.|..|.|+++..++ ....++|||||+|.+.++|++|++.++|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~----G~i~~v~i~~~~~~~-~~~~~~G~afV~f~~~~~A~~Ai~~lng-- 85 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKF----GKIHKVVINNSTSYA-GSQGPSASAYVTYIRSEDALRAIQCVNN-- 85 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTT----SCEEEEEEECCSSCC-SSSCCCEEEEEEESSHHHHHHHHHHHTT--
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhcc----CCEEEEEEecCCCcC-ccCCCCeEEEEEECcHHHHHHHHHHhCC--
Confidence 457899999999999999999 999999 999999998876532 1125679999999999999999999886
Q ss_pred ccc
Q psy5142 194 LKF 196 (410)
Q Consensus 194 ~~~ 196 (410)
..+
T Consensus 86 ~~~ 88 (111)
T 2cpi_A 86 VVV 88 (111)
T ss_dssp EEE
T ss_pred CEE
Confidence 455
No 142
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.39 E-value=5.8e-13 Score=116.19 Aligned_cols=70 Identities=19% Similarity=0.278 Sum_probs=64.4
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| |.|..|+|+++..++ .++|||||+|.+.++|.+|+..++| ..+
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~----G~v~~~~i~~~~~~g----~~~g~afV~f~~~~~a~~A~~~l~g--~~~ 137 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKY----GRVGDVYIPRDRYTK----ESRGFAFVRFHDKRDAEDAMDAMDG--AVL 137 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHH----SCEEEEECCCCSSCT----TSCCEEEEEESBHHHHHHHHHHSTT--EES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeecCCCC----ccceEEEEEECCHHHHHHHHHHhCC--CEE
Confidence 457899999999999999999999999 999999999987665 8999999999999999999999886 455
No 143
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.38 E-value=7.3e-13 Score=116.80 Aligned_cols=70 Identities=20% Similarity=0.184 Sum_probs=63.7
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+.+|+++|+.+|++| |.|..|.|+++..++ .++|||||+|.+.++|++||..++| ..+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~----G~i~~v~i~~~~~~g----~~~g~afV~f~~~~~A~~Ai~~l~g--~~~ 139 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDY----GEIKNIHLNLDRRTG----FSKGYALVEYETHKQALAAKEALNG--AEI 139 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTS----SEEEEEEEEESSHHHHHHHHHHHTT--CEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcC----CCEEEEEEEecCCCC----cEeeEEEEEECCHHHHHHHHHHhCC--CEE
Confidence 456899999999999999999999999 999999999987665 7899999999999999999999886 455
No 144
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.38 E-value=7e-13 Score=111.11 Aligned_cols=69 Identities=16% Similarity=0.219 Sum_probs=62.8
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||.++|+++|+++|++| |.|.+|.|+++. ++ .++|||||+|.+.++|.+|++.++| ..+
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~v~i~~~~-~g----~~~g~afV~f~~~~~A~~Ai~~l~g--~~~ 101 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEF----GTLKKAAVDYDR-SG----RSLGTADVHFERRADALKAMKQYKG--VPL 101 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTT----SCCSEEEEECCS-SS----SCCSEEEEEESSHHHHHHHHHHHTT--EES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEEECC-CC----CEeeEEEEEECCHHHHHHHHHHcCC--CEE
Confidence 346899999999999999999999999 999999999988 43 7999999999999999999998886 455
No 145
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=6.2e-13 Score=109.38 Aligned_cols=66 Identities=17% Similarity=0.263 Sum_probs=58.5
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
..++|||+|||+++|+++|+++|++| .|.+|+|+++..+ +++|||||+|.++++|++||. +++ ..+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-----~v~~v~i~~d~~g-----~~~G~afV~F~~~~~a~~Al~-~~~--~~~ 80 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-----RVDAVHLLKDHVG-----RNNGNGLVKFLSPQDTFEALK-RNR--MLM 80 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-----CCCEEEECCCTTC-----CCCSEEEEECSSHHHHHHHHH-TTT--EEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-----CeeEEEEEECCCC-----CCCeEEEEEECCHHHHHHHHh-cCC--CeE
Confidence 35799999999999999999999999 5889999988774 899999999999999999994 564 445
No 146
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.38 E-value=1.9e-12 Score=112.53 Aligned_cols=105 Identities=13% Similarity=0.116 Sum_probs=78.7
Q ss_pred cHHHHHHHHhhcCCceEEEecCccceecCCCCCCCCCchhhhhhccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEE
Q psy5142 73 EAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITN 152 (410)
Q Consensus 73 d~~~i~~Al~~~~S~~levsed~~~vrR~~~~p~p~~~~~~~~~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~ 152 (410)
+.+.+..|+.. .+...+......|......+.+ .....++|||+|||.++|.++|+++|++| |.|.+
T Consensus 50 ~~~~a~~A~~~--l~~~~~~g~~i~v~~~~~~~~~-------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~----G~i~~ 116 (166)
T 3md3_A 50 QSHDANIALQT--LNGKQIENNIVKINWAFQSQQS-------SSDDTFNLFVGDLNVNVDDETLRNAFKDF----PSYLS 116 (166)
T ss_dssp SHHHHHHHHHH--HTTCEETTEECEEEECCCCCCC-------CCTTCEEEEEESCCTTCCHHHHHHHHTTS----TTEEE
T ss_pred CHHHHHHHHHH--cCCCccCCCeeEEEEcCCCCCC-------CCCCCceEEECCCCCCCCHHHHHHHHhcc----CCeeE
Confidence 45666667652 2233444444444443211111 12457899999999999999999999999 99999
Q ss_pred EEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 153 IIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 153 v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
|.++++..++ .++|+|||+|.+.++|.+|+..++| ..+
T Consensus 117 ~~i~~~~~~~----~~~g~afV~f~~~~~A~~A~~~l~g--~~~ 154 (166)
T 3md3_A 117 GHVMWDMQTG----SSRGYGFVSFTSQDDAQNAMDSMQG--QDL 154 (166)
T ss_dssp EEEEECTTTC----CEEEEEEEEESCHHHHHHHHHHHTT--CEE
T ss_pred EEEEecCCCC----CcceEEEEEeCCHHHHHHHHHHhCC--Ccc
Confidence 9999887665 7899999999999999999999886 455
No 147
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=5.2e-12 Score=101.01 Aligned_cols=77 Identities=19% Similarity=0.310 Sum_probs=70.4
Q ss_pred CCCCCeEEEEeCCCCCCCHHHHH----HHHHhcCCCCCCeeEEEeeCC---CceEEEEeCChhHHHHHHHHhcCCCeEEc
Q psy5142 271 ELPTGALLKISDIKEPVSREDIR----EVLEKVQTDDQEIVFIEFNVG---EPTAFVRYKKENNAEAVLKALGSKEIVIK 343 (410)
Q Consensus 271 ~~~~g~~l~v~nL~~~~t~edLk----~~F~~~G~~~~~V~~V~~~~g---~~~afV~F~~~e~A~~Al~~l~~~~~~i~ 343 (410)
....++.|||.|||+.+++++|+ ++|++|| .|..|.+..+ .++|||+|.+.++|++|++.| ++..++
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G----~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l--~g~~~~ 78 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHG----KVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSL--HRYKIG 78 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHS----CEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHH--TTEEET
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccC----cEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHh--CCCEEC
Confidence 35677899999999999999999 9999999 9999999865 567999999999999999999 789999
Q ss_pred CeEEEEEecC
Q psy5142 344 DVKVSIEVVT 353 (410)
Q Consensus 344 g~~v~v~~l~ 353 (410)
|+.|.|....
T Consensus 79 gr~l~V~~a~ 88 (96)
T 2dgx_A 79 SKKILVSLAT 88 (96)
T ss_dssp TEEEEEEECC
T ss_pred CeEEEEEEcC
Confidence 9999999865
No 148
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=4.8e-13 Score=110.43 Aligned_cols=78 Identities=14% Similarity=0.190 Sum_probs=72.3
Q ss_pred CCCCeEEEEeCCCCC-CCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEE
Q psy5142 272 LPTGALLKISDIKEP-VSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIE 350 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~-~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~ 350 (410)
.++.++|||.|||++ +++++|+++|++|| .|..|.+.+.+++|||+|.+.++|++|++.|+.++..++|+.|.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG----~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 97 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYG----KIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 97 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTS----CCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcC----CEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 456889999999998 99999999999999 9999999999999999999999999999999766788999999998
Q ss_pred ecC
Q psy5142 351 VVT 353 (410)
Q Consensus 351 ~l~ 353 (410)
...
T Consensus 98 ~a~ 100 (112)
T 1x4f_A 98 LSE 100 (112)
T ss_dssp EEC
T ss_pred ECc
Confidence 865
No 149
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.37 E-value=6.8e-13 Score=111.96 Aligned_cols=64 Identities=27% Similarity=0.378 Sum_probs=57.4
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceE-EEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcC
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKIT-NIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENK 190 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~-~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~ 190 (410)
..++|||+|||+++|+++|+++|++| +.+. +|+|+++..+ +++|||||+|.++++|++||+..+
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~----~i~~~~v~i~~d~~G-----rsrGfaFV~F~~~e~A~~Al~~~~ 105 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL----EIVPNGITLPVDPEG-----KITGEAFVQFASQELAEKALGKHK 105 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS----CEEEEEEECCCCSSS-----SSCSEEEEEESSTTHHHHHHTTTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC----CceeeEEEEEECCCC-----CCceEEEEEECCHHHHHHHHHHCC
Confidence 46899999999999999999999999 6443 8999998874 899999999999999999998744
No 150
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=3.9e-13 Score=113.03 Aligned_cols=68 Identities=24% Similarity=0.379 Sum_probs=59.8
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCce----EEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCC
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKI----TNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDK 192 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I----~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~ 192 (410)
...++|||+|||+++|+++|++||++| |.| ..|+|+++..+ +++|||||+|.+.++|++||+. ++
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~----g~v~g~v~~v~i~~d~~g-----r~~G~aFV~F~~~~~A~~Al~~-~~- 89 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQH----CPITGGKEGILFVTYPDG-----RPTGDAFVLFACEEYAQNALRK-HK- 89 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTT----SCCTTGGGGEEEEECTTS-----CEEEEEEECCSSHHHHHHHHTT-TT-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhh----CCccCCcceEEEEECCCC-----CEeeEEEEEECCHHHHHHHHHh-CC-
Confidence 456899999999999999999999999 875 68999988644 8999999999999999999997 53
Q ss_pred Cccc
Q psy5142 193 NLKF 196 (410)
Q Consensus 193 ~~~~ 196 (410)
..+
T Consensus 90 -~~l 92 (123)
T 2dha_A 90 -DLL 92 (123)
T ss_dssp -EES
T ss_pred -Cee
Confidence 445
No 151
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.37 E-value=4.8e-12 Score=105.05 Aligned_cols=75 Identities=13% Similarity=0.193 Sum_probs=68.3
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC-----ceEEEEeCChhHHHHHHHHhcCCCeEEcCeEE
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE-----PTAFVRYKKENNAEAVLKALGSKEIVIKDVKV 347 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~-----~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v 347 (410)
...+.|||.|||.++++++|+++|++|| .|..|.+..+. ++|||+|.+.++|++|++.| ++..++|+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G----~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l--~g~~~~g~~l 78 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHG----PISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDM--NGKSLHGKAI 78 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSS----CCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHC--SSCBCSSSBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC----CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHh--CCCEECCEEE
Confidence 4457899999999999999999999999 99999998754 68999999999999999999 6788999999
Q ss_pred EEEecC
Q psy5142 348 SIEVVT 353 (410)
Q Consensus 348 ~v~~l~ 353 (410)
.|....
T Consensus 79 ~V~~a~ 84 (116)
T 2fy1_A 79 KVEQAK 84 (116)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999875
No 152
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=8.3e-13 Score=104.37 Aligned_cols=67 Identities=19% Similarity=0.287 Sum_probs=59.6
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| .|..|+|+++..+ .++|+|||+|.+.++|++|+. +++ ..+
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-----~i~~v~i~~~~~g-----~~~g~afV~f~~~~~a~~A~~-~~g--~~~ 74 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-----KPVAIRIVRNAHG-----NKTGYIFVDFSNEEEVKQALK-CNR--EYM 74 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-----CCSEEEEEECTTS-----CEEEEEEEECSSHHHHHHHHH-SCS--EEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-----CceEEEEEECCCC-----CCceEEEEEECCHHHHHHHHH-hCC--cee
Confidence 356899999999999999999999999 5889999988444 789999999999999999999 885 455
No 153
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.37 E-value=6.6e-13 Score=123.55 Aligned_cols=69 Identities=14% Similarity=0.146 Sum_probs=62.7
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCC--ceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDV--KITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLK 195 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G--~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~ 195 (410)
..++|||+|||+++|+++|+++|++| | .|..|+|+++..++ +++|||||+|.+.++|++||+.+++ ..
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~----G~~~v~~v~i~~d~~tg----~skGfaFV~f~~~~~a~~Ai~~lng--~~ 136 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSL----GVNDILEIKFFENRANG----QSKGFALVGVGSEASSKKLMDLLPK--RE 136 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTT----TCCCEEEEEEEECTTTC----CEEEEEEEEESCTTHHHHHHTTSTT--SC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHH----CCcceEEEEEEecCCCC----ccceEEEEEECCHHHHHHHHHHcCC--Ce
Confidence 56899999999999999999999999 9 99999999998765 8999999999999999999999886 45
Q ss_pred c
Q psy5142 196 F 196 (410)
Q Consensus 196 ~ 196 (410)
+
T Consensus 137 ~ 137 (229)
T 3q2s_C 137 L 137 (229)
T ss_dssp B
T ss_pred E
Confidence 5
No 154
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.36 E-value=4e-13 Score=108.34 Aligned_cols=68 Identities=15% Similarity=0.158 Sum_probs=59.3
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| |.|.. .++.+..++ .++|||||+|.+.++|++|++ ++| ..+
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~v~~-~~~~~~~~g----~~~g~afV~f~~~~~a~~A~~-l~g--~~~ 82 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISEL----FAKND-LAVVDVRTG----TNRKFGYVDFESAEDLEKALE-LTG--LKV 82 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHH----HHHHT-CCCCEEEEE----TTTTEEEEEESSHHHHHHHHH-GGG--CCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh----CCcce-EEEecCCCC----CcCcEEEEEECCHHHHHHHHh-cCC--cEE
Confidence 457899999999999999999999999 99988 555555554 789999999999999999999 775 455
No 155
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.36 E-value=1e-12 Score=105.86 Aligned_cols=63 Identities=24% Similarity=0.307 Sum_probs=57.7
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
..++|||+|||.++|+++|+++|++| |.|.+|+|. .++|||||+|.+.++|.+|+..++| ..+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~----G~i~~~~~~----------~~~g~afV~f~~~~~A~~Ai~~l~g--~~~ 88 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNF----GFILDFKHY----------PEKGCCFIKYDTHEQAAVCIVALAN--FPF 88 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTT----SCCSEEEEE----------TTTTEEEEECSSHHHHHHHHHHHTT--CEE
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhC----CCEEEEEEe----------cCCCEEEEEECCHHHHHHHHHHhCC--CeE
Confidence 36899999999999999999999999 999999987 3589999999999999999999886 456
No 156
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.36 E-value=7.9e-13 Score=109.10 Aligned_cols=65 Identities=20% Similarity=0.317 Sum_probs=58.2
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCC-ceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDV-KITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G-~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
..++|||+|||+++|+++|+++|++| | .|..|.+... .++|||||+|.+.++|++|++.++| ..+
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~----G~~v~~v~i~~~--------~~rGfaFV~F~~~e~A~~Ai~~lng--~~l 92 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLAREN----SLETTFSSVNTR--------DFDGTGALEFPSEEILVEALERLNN--IEF 92 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHH----TCCCSEEECSSC--------SSSCCEEEEESSHHHHHHHHHHTTT--EEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHh----CCeeEEEEEEcC--------CCCCEEEEEECCHHHHHHHHHHcCC--CEE
Confidence 35899999999999999999999999 9 9999988532 4689999999999999999999986 456
No 157
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=6.5e-12 Score=102.66 Aligned_cols=77 Identities=17% Similarity=0.261 Sum_probs=68.8
Q ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC---ceEEEEeCChhHHHHHHHHhcCCCeEEcCeEE
Q psy5142 271 ELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE---PTAFVRYKKENNAEAVLKALGSKEIVIKDVKV 347 (410)
Q Consensus 271 ~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~---~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v 347 (410)
.....+.|||.|||+++++++|+++|++|| .|..|.+.... .+|||+|.+.++|++|++.| ++..++|+.|
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G----~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l 91 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYG----AIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGR--DGYDYDGYRL 91 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGS----CEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHH--TTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC----CeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHc--CCCEECCeEE
Confidence 345668999999999999999999999999 99999987653 48999999999999999999 6789999999
Q ss_pred EEEecC
Q psy5142 348 SIEVVT 353 (410)
Q Consensus 348 ~v~~l~ 353 (410)
.|....
T Consensus 92 ~V~~a~ 97 (109)
T 1x4a_A 92 RVEFPR 97 (109)
T ss_dssp EEECCC
T ss_pred EEEEcc
Confidence 998754
No 158
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.36 E-value=4.9e-13 Score=107.99 Aligned_cols=62 Identities=21% Similarity=0.356 Sum_probs=58.5
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHH
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLN 187 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~ 187 (410)
...++|||+|||+++|+++|+++|++| |.|.+|+|+++. ++ .++|||||+|.+.++|++|+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~-~g----~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARY----GSVKEVKIITDR-TG----VSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGG----SCEEEEEEEECT-TS----CEEEEEEEEESSCCCHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC----CCeEEEEEEECC-CC----CccceEEEEECCHHHHHHHHh
Confidence 567999999999999999999999999 999999999988 43 899999999999999999999
No 159
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=1.4e-12 Score=106.81 Aligned_cols=66 Identities=20% Similarity=0.161 Sum_probs=59.4
Q ss_pred hhccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCc
Q psy5142 115 KDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNL 194 (410)
Q Consensus 115 ~~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~ 194 (410)
.....++|||+|||.++|+++|+++|++| |.|..|.|++ .+|||||+|.+.++|.+|+..++| .
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~----G~i~~v~i~~----------~~g~afV~f~~~~~a~~A~~~l~g--~ 84 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPF----GQIMEIRVFP----------EKGYSFVRFSTHESAAHAIVSVNG--T 84 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHH----SCEEEEEEET----------TTTEEEEEESSHHHHHHHHHHHTT--C
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeC----------CCCEEEEEECCHHHHHHHHHHcCC--C
Confidence 34567899999999999999999999999 9999999974 379999999999999999999886 4
Q ss_pred cc
Q psy5142 195 KF 196 (410)
Q Consensus 195 ~~ 196 (410)
.+
T Consensus 85 ~~ 86 (109)
T 1x4g_A 85 TI 86 (109)
T ss_dssp EE
T ss_pred EE
Confidence 56
No 160
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=7.5e-12 Score=99.10 Aligned_cols=74 Identities=14% Similarity=0.302 Sum_probs=68.6
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEe
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEV 351 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~ 351 (410)
....+.|||.|||+.+++++|+++|++|| .|..|.+.++ +|||+|.+.++|++|+..| ++..++|+.|.|..
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G----~v~~v~~~~~--~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYG----PVIECDIVKD--YAFVHMERAEDAVEAIRGL--DNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTS----CCCEEEECSS--EEEEEESCHHHHHHHHHHH--TTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC----CeEEEEEECC--EEEEEECCHHHHHHHHHHh--CCCeeCCcEEEEEE
Confidence 45678999999999999999999999999 9999999875 9999999999999999999 78999999999998
Q ss_pred cC
Q psy5142 352 VT 353 (410)
Q Consensus 352 l~ 353 (410)
..
T Consensus 79 a~ 80 (92)
T 2dgt_A 79 ST 80 (92)
T ss_dssp SS
T ss_pred cc
Confidence 64
No 161
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.35 E-value=5e-12 Score=104.04 Aligned_cols=78 Identities=12% Similarity=0.107 Sum_probs=69.3
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCeEEcCeE
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE------PTAFVRYKKENNAEAVLKALGSKEIVIKDVK 346 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~ 346 (410)
++...|||.|||+.+++++|+++|++|| .|..|.+..+. ++|||.|.+.++|++|++.| ++..++|+.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G----~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~l--ng~~~~gr~ 77 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYG----EVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNL--HLTSVMGNI 77 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTS----CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcC----CeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHh--CCCEECCeE
Confidence 4567899999999999999999999999 99999987543 36999999999999999999 789999999
Q ss_pred EEEEecCchH
Q psy5142 347 VSIEVVTGEE 356 (410)
Q Consensus 347 v~v~~l~g~e 356 (410)
|.|.+....+
T Consensus 78 i~V~~a~~~~ 87 (110)
T 3s8s_A 78 IHAQLDIKGQ 87 (110)
T ss_dssp CEEEECSTTH
T ss_pred EEEEECCCCc
Confidence 9999876443
No 162
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.35 E-value=1.7e-12 Score=103.83 Aligned_cols=63 Identities=11% Similarity=0.158 Sum_probs=57.1
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
..++|||+|||.++|+++|+++|++| |.|.+|.|.+ .+|||||+|.+.++|++|++.+++ ..+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~v~~~~----------~~g~afV~f~~~~~A~~A~~~l~g--~~~ 78 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRF----GSIRTIDHVK----------GDSFAYIQYESLDAAQAACAKMRG--FPL 78 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTT----SCEEEEEECS----------SSCCEEEEESSHHHHHHHHHHHTT--CBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEeC----------CCCEEEEEECCHHHHHHHHHHHCC--CEe
Confidence 45899999999999999999999999 9999999873 278999999999999999999886 445
No 163
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=2.4e-12 Score=101.55 Aligned_cols=62 Identities=23% Similarity=0.327 Sum_probs=56.5
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||.++|+++|+++|++| |.|..|.|+ +|||||+|.+.++|++|++.+++ ..+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~~~------------~g~afV~f~~~~~A~~A~~~l~g--~~~ 67 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQY----GKVLECDII------------KNYGFVHIEDKTAAEDAIRNLHH--YKL 67 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTS----SCEEEEEEE------------TTEEEEEESSHHHHHHHHHHHTT--CBC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEE------------CCEEEEEECCHHHHHHHHHHhcC--Ccc
Confidence 346899999999999999999999999 999999885 67999999999999999999886 455
No 164
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=1.7e-12 Score=107.04 Aligned_cols=66 Identities=12% Similarity=0.238 Sum_probs=61.8
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
...++|||+|||+++|+++|+++|++| |.|..|.|+++. ++ .++|||||+|.+.++|++|++.++|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~~~i~~~~-~g----~~~g~afV~f~~~~~a~~A~~~l~g 88 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPF----GQVISTRILRDS-SG----TSRGVGFARMESTEKCEAVIGHFNG 88 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTT----SCEEEEEEEECS-SS----CEEEEEEEEESCHHHHHHHHHHHBT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEECC-CC----CcceEEEEEECCHHHHHHHHHHhCC
Confidence 457899999999999999999999999 999999999988 43 7899999999999999999999987
No 165
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=1e-12 Score=105.90 Aligned_cols=66 Identities=24% Similarity=0.335 Sum_probs=57.6
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| |.| +++++..+ .++|||||+|.+.++|++|+..+++ ..+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----g~v---~~~~~~~g-----~~~g~afV~f~~~~~A~~A~~~l~g--~~~ 78 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKA----TFI---KVPQNQNG-----KSKGYAFIEFASFEDAKEALNSCNK--REI 78 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSC----SEE---ECCBCSSS-----CBCSEEEEECSSHHHHHHHHHHTSS--EEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC----CEE---EEEECCCC-----CEeeEEEEEECCHHHHHHHHHHhCC--CEe
Confidence 457999999999999999999999999 987 56665443 7899999999999999999999886 455
No 166
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.34 E-value=1e-12 Score=105.54 Aligned_cols=64 Identities=22% Similarity=0.345 Sum_probs=58.1
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| |.|..|.|++ .+|||||+|.+.++|++|++.++| ..+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~~~~----------~kg~afV~f~~~~~a~~a~~~l~g--~~~ 76 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKY----GKAGEVFIHK----------DKGFGFIRLETRTLAEIAKVELDN--MPL 76 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTT----CCCSEEEEET----------TTTEEEEECSSSHHHHHHHHHHTT--CCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhc----CCeEEEEEec----------CCCEEEEEECCHHHHHHHHHHhCC--CEe
Confidence 456899999999999999999999999 9999999873 479999999999999999999886 445
No 167
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=3.2e-13 Score=113.39 Aligned_cols=69 Identities=26% Similarity=0.334 Sum_probs=58.5
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| |.|..+.++.+..++ .++|||||+|.+.++|++||+ +++ ..+
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~----G~v~~~~~~~~~~~g----~~~G~afV~F~~~~~a~~Al~-~~g--~~~ 91 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKL----DIVEDSIYIAYGPNG----KATGEGFVEFRNEADYKAALC-RHK--QYM 91 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSS----CBCTTTCEEEECTTS----SEEEEEEEEBSSSHHHHHHHT-SCS--BCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc----CCccceEEEEECCCC----CCCeEEEEEECCHHHHHHHHH-hCC--CeE
Confidence 346899999999999999999999999 999885444444443 789999999999999999999 775 455
No 168
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.34 E-value=5.5e-13 Score=114.49 Aligned_cols=67 Identities=19% Similarity=0.261 Sum_probs=59.2
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| | |.+|+|+++..+ +++|||||+|.+.++|++|| .+++ ..+
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~----G-i~~v~i~~d~~g-----~srGfaFV~F~~~e~A~~Al-~~~g--~~l 110 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPL----N-PVRVHIEIGPDG-----RVTGEADVEFATHEEAVAAM-SKDR--ANM 110 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSC----C-CSEEECCCSSSS-----CSSCCCEEECSHHHHHHHHT-TCCS--CSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----C-CeEEEEEECCCC-----CCceEEEEEeCCHHHHHHHH-hhCC--CEE
Confidence 456899999999999999999999999 9 779999998774 89999999999999999999 5564 445
No 169
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.34 E-value=2.1e-12 Score=109.10 Aligned_cols=66 Identities=15% Similarity=0.319 Sum_probs=58.1
Q ss_pred cceeeEeecCCCCCCHHHHH----HHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCC
Q psy5142 118 IAQSLYVKYIPVDATLDDIK----DFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKN 193 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~----~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~ 193 (410)
..++|||+|||+.+++++|+ ++|++| |.|.+|.+.+. + .++|||||+|.+.++|.+|+..++|
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~----G~I~~v~i~~~--~-----~~rG~aFV~F~~~~~A~~Ai~~lng-- 94 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQ----GDILDIVVDLS--D-----DNSGKAYIVFATQESAQAFVEAFQG-- 94 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHH----SCEEEEEECCC--C-----SSCCCEEEEESSHHHHHHHHHHSTT--
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccC----CCeEEEEeccC--C-----CcCCEEEEEECCHHHHHHHHHHHCC--
Confidence 46899999999999999876 799999 99999988642 2 6799999999999999999999997
Q ss_pred ccc
Q psy5142 194 LKF 196 (410)
Q Consensus 194 ~~~ 196 (410)
..+
T Consensus 95 ~~l 97 (127)
T 2a3j_A 95 YPF 97 (127)
T ss_dssp CCC
T ss_pred CEe
Confidence 455
No 170
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.34 E-value=3.2e-12 Score=102.25 Aligned_cols=76 Identities=13% Similarity=0.265 Sum_probs=70.0
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEc--CeEEEE
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIK--DVKVSI 349 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~--g~~v~v 349 (410)
.++.+.|+|.|||+.+++++|+++|++|| .|..|++.++.++|||+|.+.++|++|++.| ++..++ |+.|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G----~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFG----SIRTIDHVKGDSFAYIQYESLDAAQAACAKM--RGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTS----CEEEEEECSSSCCEEEEESSHHHHHHHHHHH--TTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC----CeeEEEEeCCCCEEEEEECCHHHHHHHHHHH--CCCEeCCCCcEEEE
Confidence 34567899999999999999999999999 9999999998889999999999999999999 677888 999999
Q ss_pred EecC
Q psy5142 350 EVVT 353 (410)
Q Consensus 350 ~~l~ 353 (410)
....
T Consensus 88 ~~a~ 91 (97)
T 1why_A 88 DFAK 91 (97)
T ss_dssp EECC
T ss_pred EECC
Confidence 8765
No 171
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=7e-12 Score=98.84 Aligned_cols=73 Identities=18% Similarity=0.334 Sum_probs=67.8
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEec
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVV 352 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l 352 (410)
.+.+.|||.|||+.+++++|+++|++|| .|..|.+.++ +|||+|.+.++|++|+..| ++..++|+.|.|...
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G----~v~~~~~~~~--~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRG----RVIECDVVKD--YAFVHMEKEADAKAAIAQL--NGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHS----CEEEEEECSS--CEEEEESCHHHHHHHHHHH--TTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCC----CEEEEEEECC--EEEEEECCHHHHHHHHHHh--CCCEECCcEEEEEEC
Confidence 4567899999999999999999999999 9999999875 9999999999999999999 678999999999986
Q ss_pred C
Q psy5142 353 T 353 (410)
Q Consensus 353 ~ 353 (410)
.
T Consensus 79 ~ 79 (90)
T 2dnp_A 79 T 79 (90)
T ss_dssp C
T ss_pred C
Confidence 4
No 172
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=6.4e-12 Score=102.76 Aligned_cols=76 Identities=14% Similarity=0.182 Sum_probs=71.0
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEe
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEV 351 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~ 351 (410)
.+..+.|||.|||..+++++|+++|++|| .|..|.+..+.++|||.|.+.++|++|+..| ++..++|+.|.|..
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G----~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFG----QIMEIRVFPEKGYSFVRFSTHESAAHAIVSV--NGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHS----CEEEEEEETTTTEEEEEESSHHHHHHHHHHH--TTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC----CeEEEEEeCCCCEEEEEECCHHHHHHHHHHc--CCCEECCcEEEEEe
Confidence 45678999999999999999999999999 9999999999999999999999999999999 67899999999987
Q ss_pred cC
Q psy5142 352 VT 353 (410)
Q Consensus 352 l~ 353 (410)
..
T Consensus 96 a~ 97 (109)
T 1x4g_A 96 GK 97 (109)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 173
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=6.9e-12 Score=99.69 Aligned_cols=75 Identities=15% Similarity=0.220 Sum_probs=67.8
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCeEEcCeE
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE------PTAFVRYKKENNAEAVLKALGSKEIVIKDVK 346 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~ 346 (410)
++.+.|+|.|||..+++++|+++|++|| .|..|.+..+. ++|||+|.+.++|++|+..| ++..++|+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G----~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~ 76 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFG----KIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL--NGFELAGRP 76 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTS----CEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHH--TTCCSSSSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC----CEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHh--CCCeeCCcE
Confidence 4567999999999999999999999999 99999998753 47999999999999999999 678999999
Q ss_pred EEEEecC
Q psy5142 347 VSIEVVT 353 (410)
Q Consensus 347 v~v~~l~ 353 (410)
|.|....
T Consensus 77 l~V~~a~ 83 (95)
T 2dnz_A 77 MRVGHVT 83 (95)
T ss_dssp CEEEESS
T ss_pred EEEEEcc
Confidence 9999764
No 174
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.33 E-value=6e-12 Score=97.84 Aligned_cols=74 Identities=16% Similarity=0.280 Sum_probs=66.6
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCeE
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDVK 346 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~ 346 (410)
++.+.|+|.|||+++++++|+++|++|| .|..|.+..+ .++|||+|.+.++|++|++.| ++..++|+.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~ 78 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFG----DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM--NESELFGRT 78 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGS----CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHH--TTCEETTEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccC----CEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHh--CCCEECCcE
Confidence 4567999999999999999999999999 9999988653 457999999999999999999 678999999
Q ss_pred EEEEec
Q psy5142 347 VSIEVV 352 (410)
Q Consensus 347 v~v~~l 352 (410)
|.|+..
T Consensus 79 l~v~~a 84 (85)
T 3mdf_A 79 IRVNLA 84 (85)
T ss_dssp CEEEEC
T ss_pred EEEEEc
Confidence 999864
No 175
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=1.8e-11 Score=98.86 Aligned_cols=76 Identities=17% Similarity=0.217 Sum_probs=69.3
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC----CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEE
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG----EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKV 347 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g----~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v 347 (410)
....+.|||.|||+.+++++|+++|++|| .|..|.+..+ .++|||+|.+.++|++|+..| ++..++|+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G----~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l 85 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIG----PCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAM--NGRKILGKEV 85 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHS----CEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHH--TTEEETTEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcC----CEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHh--CCCCcCCCeE
Confidence 45678999999999999999999999999 9999998873 458999999999999999999 6899999999
Q ss_pred EEEecC
Q psy5142 348 SIEVVT 353 (410)
Q Consensus 348 ~v~~l~ 353 (410)
.|....
T Consensus 86 ~V~~a~ 91 (103)
T 2cqi_A 86 KVNWAT 91 (103)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999865
No 176
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=4.9e-12 Score=101.55 Aligned_cols=77 Identities=13% Similarity=0.254 Sum_probs=71.4
Q ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEE
Q psy5142 271 ELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIE 350 (410)
Q Consensus 271 ~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~ 350 (410)
..++.+.|||.|||+.+++++|+++|++|| .|..|.+.+..++|||+|.+.++|++|++.| ++..++|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G----~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l--~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYG----KAGEVFIHKDKGFGFIRLETRTLAEIAKVEL--DNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTC----CCSEEEEETTTTEEEEECSSSHHHHHHHHHH--TTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcC----CeEEEEEecCCCEEEEEECCHHHHHHHHHHh--CCCEeCCceEEEE
Confidence 456678999999999999999999999999 9999999999999999999999999999999 6788999999999
Q ss_pred ecC
Q psy5142 351 VVT 353 (410)
Q Consensus 351 ~l~ 353 (410)
...
T Consensus 85 ~a~ 87 (99)
T 2cpj_A 85 FAC 87 (99)
T ss_dssp ESS
T ss_pred EcC
Confidence 864
No 177
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.32 E-value=1.7e-12 Score=103.68 Aligned_cols=67 Identities=22% Similarity=0.444 Sum_probs=59.7
Q ss_pred ccceeeEeecCCCCCCHHHHH----HHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCC
Q psy5142 117 LIAQSLYVKYIPVDATLDDIK----DFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDK 192 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~----~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~ 192 (410)
...++|||+|||.++|+++|+ ++|++| |.|..|.|++ ++ .++|||||+|.+.++|.+|+..++|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~----G~i~~v~i~~---~~----~~~g~afV~f~~~~~A~~A~~~l~g- 73 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRF----GQILDILVSR---SL----KMRGQAFVIFKEVSSATNALRSMQG- 73 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGG----SCEEEEECCH---HH----HHTTCEEEEESSHHHHHHHHHHHTT-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhC----CCEEEEEEEc---CC----CcCcEEEEEeCCHHHHHHHHHHhCC-
Confidence 346899999999999999999 999999 9999999874 22 6799999999999999999999886
Q ss_pred Cccc
Q psy5142 193 NLKF 196 (410)
Q Consensus 193 ~~~~ 196 (410)
..+
T Consensus 74 -~~~ 76 (97)
T 1nu4_A 74 -FPF 76 (97)
T ss_dssp -CEE
T ss_pred -CEE
Confidence 455
No 178
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.32 E-value=7.5e-12 Score=97.69 Aligned_cols=75 Identities=11% Similarity=0.110 Sum_probs=66.8
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCeEEcCeE
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE------PTAFVRYKKENNAEAVLKALGSKEIVIKDVK 346 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~ 346 (410)
++.+.|+|.|||..+++++|+++|++|| .|..|.+..+. ++|||+|.+.++|++|+..| ++..++|+.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G----~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~ 77 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFG----RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM--GGQWLGGRQ 77 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGS----CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcC----CEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHc--CCCEECCeE
Confidence 4568999999999999999999999999 99999987653 46999999999999999999 678999999
Q ss_pred EEEEecC
Q psy5142 347 VSIEVVT 353 (410)
Q Consensus 347 v~v~~l~ 353 (410)
|.|....
T Consensus 78 l~v~~a~ 84 (87)
T 3bs9_A 78 IRTNWAT 84 (87)
T ss_dssp CEEEEEC
T ss_pred EEEEecC
Confidence 9998765
No 179
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=1e-12 Score=108.37 Aligned_cols=70 Identities=23% Similarity=0.251 Sum_probs=56.8
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| |.|..|.+.....++ .++|||||+|.+.++|++|+..++| ..+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~----G~v~~~~~~~~~~~g----~~~g~afV~f~~~~~a~~Ai~~l~g--~~~ 92 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARF----QEKKGPPIQFRMMTG----RMRGQAFITFPNKEIAWQALHLVNG--YKL 92 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHH----HHSSSSCCEEEEECS----SSCSEEEEECSSHHHHHHHHHHSTT--CBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh----CCccceEEEEEcCCC----ccceEEEEEECCHHHHHHHHHHhCC--CEe
Confidence 346899999999999999999999999 999433222221133 7899999999999999999999886 455
No 180
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.32 E-value=4.3e-12 Score=109.85 Aligned_cols=66 Identities=14% Similarity=0.200 Sum_probs=59.7
Q ss_pred hccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcc
Q psy5142 116 DLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLK 195 (410)
Q Consensus 116 ~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~ 195 (410)
....++|||+|||+++|+++|+++|++| |.|.+|+|+++ ++|||||+|.+.++|.+|+..++| ..
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~----G~i~~v~i~~~---------~~g~afV~f~~~~~a~~A~~~l~g--~~ 134 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYY----GPLRSVWVARN---------PPGFAFVEFEDPRDAADAVRELDG--RT 134 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHH----SCEEEEEECSS---------SCSEEEEEESSHHHHHHHHHHHSS--SC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhh----CCEEEEEEeeC---------CCcEEEEEECCHHHHHHHHHHcCC--CE
Confidence 3567999999999999999999999999 99999999863 489999999999999999999886 44
Q ss_pred c
Q psy5142 196 F 196 (410)
Q Consensus 196 ~ 196 (410)
+
T Consensus 135 ~ 135 (150)
T 2i2y_A 135 L 135 (150)
T ss_dssp S
T ss_pred E
Confidence 5
No 181
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=1.1e-11 Score=100.15 Aligned_cols=76 Identities=20% Similarity=0.317 Sum_probs=69.5
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC----CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEE
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG----EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKV 347 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g----~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v 347 (410)
..+.+.|||.|||+.+++++|+++|++|| .|..|.+..+ .++|||+|.+.++|++|+..| ++..++|+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G----~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l 85 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFG----KILDVEIIFNERGSKGFGFVTFENSADADRAREKL--HGTVVEGRKI 85 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTS----CEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHH--TTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC----CeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHh--CCCEECCEEE
Confidence 45668999999999999999999999999 9999999865 468999999999999999999 6789999999
Q ss_pred EEEecC
Q psy5142 348 SIEVVT 353 (410)
Q Consensus 348 ~v~~l~ 353 (410)
.|....
T Consensus 86 ~v~~a~ 91 (103)
T 2cq3_A 86 EVNNAT 91 (103)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 999865
No 182
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.32 E-value=9.6e-12 Score=99.69 Aligned_cols=75 Identities=13% Similarity=0.191 Sum_probs=68.7
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCeEEcCeE
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE------PTAFVRYKKENNAEAVLKALGSKEIVIKDVK 346 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~ 346 (410)
.+.+.|+|.|||+.+++++|+++|++|| .|..|.+..+. ++|||+|.+.++|++|+..| ++..++|+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~ 79 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYG----PLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV--DGQVFQGRM 79 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTS----CEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHT--TTEESSSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC----CEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHh--CCCEECCcE
Confidence 4568999999999999999999999999 99999997654 57999999999999999999 679999999
Q ss_pred EEEEecC
Q psy5142 347 VSIEVVT 353 (410)
Q Consensus 347 v~v~~l~ 353 (410)
|.|....
T Consensus 80 l~V~~a~ 86 (99)
T 1whw_A 80 LHVLPST 86 (99)
T ss_dssp EEEEECC
T ss_pred EEEEEcC
Confidence 9999865
No 183
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.00 E-value=1.4e-13 Score=114.02 Aligned_cols=70 Identities=21% Similarity=0.341 Sum_probs=63.5
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEE--------EEEcccCcccccccccccEEEEEecCHHHHHHHHHh
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITN--------IIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNE 188 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~--------v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~ 188 (410)
...++|||+|||+++|+++|+++|++| |.|.. |.|+++..++ .++|||||+|.+.++|++|++.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~~~~~~~v~i~~~~~~g----~~~g~afV~f~~~~~A~~Ai~~ 76 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQI----GIIKTNKKTGQPMINLYTDRETG----KLKGEATVSFDDPPSAKAAIDW 76 (116)
Confidence 457899999999999999999999999 99999 8898887665 7899999999999999999998
Q ss_pred cCCCCccc
Q psy5142 189 NKDKNLKF 196 (410)
Q Consensus 189 ~~g~~~~~ 196 (410)
++| ..+
T Consensus 77 l~g--~~~ 82 (116)
T 2lcw_A 77 FDG--KEF 82 (116)
Confidence 886 455
No 184
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.32 E-value=1.8e-12 Score=104.53 Aligned_cols=62 Identities=16% Similarity=0.229 Sum_probs=56.7
Q ss_pred eeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 120 QSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 120 rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
++|||+|||+++|+++|+++|++| |.|..|.|+++ ++|||||+|.+.++|++|++.++| ..+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~---------~~g~afV~f~~~~~a~~A~~~l~g--~~~ 62 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYY----GPLRTVWIARN---------PPGFAFVEFEDPRDAEDAVRGLDG--KVI 62 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHH----CCCSEEEEESS---------SSSEEEEECSSHHHHHHHHHHHHH--SCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeeC---------CCCEEEEEECCHHHHHHHHHHHCC--CeE
Confidence 489999999999999999999999 99999999864 489999999999999999998885 455
No 185
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.32 E-value=9.5e-12 Score=101.19 Aligned_cols=77 Identities=22% Similarity=0.308 Sum_probs=69.3
Q ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC-----CceEEEEeCChhHHHHHHHHhcCCCeEEcCe
Q psy5142 271 ELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG-----EPTAFVRYKKENNAEAVLKALGSKEIVIKDV 345 (410)
Q Consensus 271 ~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g-----~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~ 345 (410)
...+++.|+|.|||+.+++++|+++|++|| .|..|.+..+ .++|||+|.+.++|++|+..| ++..++|+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G----~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~ 98 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFG----TLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY--NGVPLDGR 98 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTS----CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHH--TTCEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC----CeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHh--CCCEeCCc
Confidence 346788999999999999999999999999 9999988854 346999999999999999999 67899999
Q ss_pred EEEEEecC
Q psy5142 346 KVSIEVVT 353 (410)
Q Consensus 346 ~v~v~~l~ 353 (410)
.|.|.++.
T Consensus 99 ~l~V~~a~ 106 (107)
T 3ulh_A 99 PMNIQLVT 106 (107)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEeC
Confidence 99998865
No 186
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=2.8e-12 Score=101.19 Aligned_cols=62 Identities=11% Similarity=0.246 Sum_probs=56.3
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| |.|..|.|+ ++||||+|.+.++|++|++.++| ..+
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~~~~~------------~~~afV~f~~~~~a~~A~~~l~g--~~~ 68 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERR----GRVIECDVV------------KDYAFVHMEKEADAKAAIAQLNG--KEV 68 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHH----SCEEEEEEC------------SSCEEEEESCHHHHHHHHHHHTT--CEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcC----CCEEEEEEE------------CCEEEEEECCHHHHHHHHHHhCC--CEE
Confidence 456899999999999999999999999 999999986 45899999999999999999886 455
No 187
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.31 E-value=4e-12 Score=105.29 Aligned_cols=73 Identities=14% Similarity=0.308 Sum_probs=66.2
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC----ceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEe
Q psy5142 276 ALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE----PTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEV 351 (410)
Q Consensus 276 ~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~----~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~ 351 (410)
..|||.|||+++++++|+++|++|| .|..|.+..+. ++|||+|.+.++|++||+.| ++..++|+.|.|..
T Consensus 6 ~~lfV~nLp~~~te~~L~~~F~~~G----~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l--~~~~~~g~~i~V~~ 79 (115)
T 4f25_A 6 GNIFIKNLDKSIDNKALYDTFSAFG----NILSCKVVCDENGSKGYGFVHFETQEAAERAIEKM--NGMLLNDRKVFVGR 79 (115)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGS----CEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHH--TTCEETTEECEEEE
T ss_pred CEEEECCCCCCCCHHHHHHHHhccC----CEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHc--CCCEECCEEEEEEE
Confidence 4799999999999999999999999 99999887643 46999999999999999999 67899999999988
Q ss_pred cCc
Q psy5142 352 VTG 354 (410)
Q Consensus 352 l~g 354 (410)
...
T Consensus 80 a~~ 82 (115)
T 4f25_A 80 FKS 82 (115)
T ss_dssp SSC
T ss_pred CCC
Confidence 754
No 188
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=6.3e-12 Score=100.09 Aligned_cols=75 Identities=8% Similarity=0.178 Sum_probs=66.9
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEE-EeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCe
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFI-EFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDV 345 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V-~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~ 345 (410)
.+++.|+|.|||+.+++++|+++|++|| .|..| .+..+ .++|||+|.+.++|++|+..| ++..++|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G----~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~ 76 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFG----VILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAM--NGQYLCNR 76 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTS----CBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTT--TTCEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC----CeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHc--CCCEECCE
Confidence 3567999999999999999999999999 88877 77664 457999999999999999999 67889999
Q ss_pred EEEEEecC
Q psy5142 346 KVSIEVVT 353 (410)
Q Consensus 346 ~v~v~~l~ 353 (410)
.|.|....
T Consensus 77 ~l~v~~a~ 84 (96)
T 1x5t_A 77 PITVSYAF 84 (96)
T ss_dssp ECEEEESC
T ss_pred EEEEEEec
Confidence 99999864
No 189
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.31 E-value=5.3e-12 Score=110.73 Aligned_cols=102 Identities=14% Similarity=0.131 Sum_probs=78.2
Q ss_pred cHHHHHHHHhhcCCceEEEecCccceecCCCCCCCCCchhhhhhccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEE
Q psy5142 73 EAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITN 152 (410)
Q Consensus 73 d~~~i~~Al~~~~S~~levsed~~~vrR~~~~p~p~~~~~~~~~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~ 152 (410)
+.+.+..||. . +...+..-...|++...... ....++|||+|||.++|+++|+++|++| |.|..
T Consensus 60 ~~~~A~~A~~-~--~~~~~~g~~i~v~~~~~~~~---------~~~~~~l~v~nlp~~~t~~~l~~~f~~~----G~v~~ 123 (172)
T 2g4b_A 60 SVDETTQAMA-F--DGIIFQGQSLKIRRPHDYQP---------LPGAHKLFIGGLPNYLNDDQVKELLTSF----GPLKA 123 (172)
T ss_dssp SHHHHHHHGG-G--TTCEETTEECEEECCSSCCC---------CTTTTCEEEECCCTTCCHHHHHHHHHTT----SCEEE
T ss_pred CHHHHHHHHH-h--CCcEecCceeeecCCcccCC---------CCCCCEEEEEcCCCcCCHHHHHHHHHhc----CCceE
Confidence 4677777773 2 23445444444554321111 1336899999999999999999999999 99999
Q ss_pred EEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 153 IIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 153 v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
|.++++..++ .++|+|||+|.+.++|.+|++.++| ..+
T Consensus 124 v~i~~~~~~g----~~~g~afV~f~~~~~A~~A~~~l~g--~~~ 161 (172)
T 2g4b_A 124 FNLVKDSATG----LSKGYAFCEYVDINVTDQAIAGLNG--MQL 161 (172)
T ss_dssp EEEEECTTTC----SEEEEEEEEESSTTHHHHHHHHHTT--CEE
T ss_pred EEEEecCCCC----CcceEEEEEeCCHHHHHHHHHHcCC--CEE
Confidence 9999987554 7899999999999999999999886 455
No 190
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.31 E-value=7e-12 Score=112.34 Aligned_cols=107 Identities=21% Similarity=0.261 Sum_probs=76.8
Q ss_pred cHHHHHHHHhhcCCceEEEecCccceecCCCCCCCCCchhhhhhccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEE
Q psy5142 73 EAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITN 152 (410)
Q Consensus 73 d~~~i~~Al~~~~S~~levsed~~~vrR~~~~p~p~~~~~~~~~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~ 152 (410)
+.+.+..||.. ....+..-...|.+....+.+.. .......++|||+|||+++|+++|+++|++| |.|..
T Consensus 64 ~~~~A~~A~~~---~~~~~~g~~l~v~~~~~~~~~~~---~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~ 133 (196)
T 1l3k_A 64 TVEEVDAAMNA---RPHKVDGRVVEPKRAVSREDSQR---PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY----GKIEV 133 (196)
T ss_dssp SHHHHHHHHHT---CSCEETTEECEEEECCC--------------CCSEEEEECCTTTCCHHHHHHHHTTT----SCEEE
T ss_pred CHHHHHHHHhc---CCCEECCEEeeeecccCcccccc---cccCCCcceEEEeCCCCCCCHHHHHHHHhcC----CCeEE
Confidence 46778888873 33445444444544421111110 1122456899999999999999999999999 99999
Q ss_pred EEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 153 IIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 153 v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
|.++++..++ .++|||||+|.+.++|.+|+.. ++ ..+
T Consensus 134 v~i~~~~~~g----~~~g~afV~F~~~~~A~~A~~~-~~--~~~ 170 (196)
T 1l3k_A 134 IEIMTDRGSG----KKRGFAFVTFDDHDSVDKIVIQ-KY--HTV 170 (196)
T ss_dssp EEEEECTTTC----CEEEEEEEEESSHHHHHHHHHC-SC--CEE
T ss_pred EEEeecCCCC----CccceEEEEECCHHHHHHHHHh-CC--cEE
Confidence 9999987665 7899999999999999999987 43 556
No 191
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.31 E-value=6.8e-12 Score=97.04 Aligned_cols=73 Identities=12% Similarity=0.203 Sum_probs=66.3
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEE
Q psy5142 276 ALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSI 349 (410)
Q Consensus 276 ~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v 349 (410)
+.|+|.|||+.+++++|+++|++|| .|..|.+..+ .++|||.|.+.++|++|+..| ++..++|+.|.|
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G----~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l--~g~~~~g~~l~v 75 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFP----SYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM--QGQDLNGRPLRI 75 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTST----TEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHH--TTCEETTEECEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcC----CeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHh--cCCeeCCcEEEE
Confidence 5799999999999999999999999 9999988865 346999999999999999999 678999999999
Q ss_pred EecCc
Q psy5142 350 EVVTG 354 (410)
Q Consensus 350 ~~l~g 354 (410)
.....
T Consensus 76 ~~a~~ 80 (83)
T 3md1_A 76 NWAAK 80 (83)
T ss_dssp EECCC
T ss_pred EecCc
Confidence 98764
No 192
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=8.3e-12 Score=97.10 Aligned_cols=76 Identities=14% Similarity=0.239 Sum_probs=68.8
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEe
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEV 351 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~ 351 (410)
.++.+.|+|.|||..+++++|+++|++|| .|..|.+.+..++|||+|.+.++|++|+..|. ++..++|+.|.|+.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G----~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~-~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFG----EIRTITVVQRQQCAFIQFATRQAAEVAAEKSF-NKLIVNGRRLNVKW 83 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTS----CEEEEEEEGGGTEEEEEESSHHHHHHHHHTTT-TTCEETTEECCEEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCC----CEeEEEEECCCCEEEEEECCHHHHHHHHHHhc-CCeeECCCEEEEEe
Confidence 35567999999999999999999999999 99999999988999999999999999999873 46889999998875
Q ss_pred c
Q psy5142 352 V 352 (410)
Q Consensus 352 l 352 (410)
.
T Consensus 84 a 84 (85)
T 2ytc_A 84 G 84 (85)
T ss_dssp C
T ss_pred c
Confidence 4
No 193
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.31 E-value=4.2e-12 Score=101.51 Aligned_cols=62 Identities=16% Similarity=0.294 Sum_probs=56.0
Q ss_pred ccceeeEeecCCC-CCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcc
Q psy5142 117 LIAQSLYVKYIPV-DATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLK 195 (410)
Q Consensus 117 ~~~rtv~V~~lp~-~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~ 195 (410)
...++|||+|||+ ++|+++|+++|++| |.|..|.|+ +|||||+|.+.++|++|++.++| ..
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~----G~v~~v~i~------------~g~afV~f~~~~~A~~A~~~l~g--~~ 69 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPY----GHIMQINIK------------NAFGFIQFDNPQSVRDAIECESQ--EM 69 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTT----CCCCEEEEE------------TTEEEEEESCHHHHHHHHHHHTC--SS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhc----CCEEEEEEe------------CCEEEEEECCHHHHHHHHHHcCC--Ce
Confidence 4578999999998 99999999999999 999999873 68999999999999999999886 44
Q ss_pred c
Q psy5142 196 F 196 (410)
Q Consensus 196 ~ 196 (410)
+
T Consensus 70 ~ 70 (96)
T 2kvi_A 70 N 70 (96)
T ss_dssp C
T ss_pred e
Confidence 5
No 194
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.31 E-value=4.8e-12 Score=104.17 Aligned_cols=74 Identities=14% Similarity=0.190 Sum_probs=69.0
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEecC
Q psy5142 274 TGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVT 353 (410)
Q Consensus 274 ~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l~ 353 (410)
.+++|+|.|||+++++++|+++|++|| .|..|.+.+..++|||+|.+.++|++|+..| ++..++|+.|.|....
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G----~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFG----SLGRVLLPEGGITAIVEFLEPLEARKAFRHL--AYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTS----CEEEEECCSSSSCEEEEESCHHHHHHHHHHH--TTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC----CEEEEEEeCCCCEEEEEeCCHHHHHHHHHHh--CCCEECCeEEEEEECC
Confidence 467999999999999999999999999 9999999988899999999999999999999 6788999999998764
No 195
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=2.4e-12 Score=103.03 Aligned_cols=65 Identities=17% Similarity=0.314 Sum_probs=56.7
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| |.|. +.++.. .++|||||+|.+.++|++|++.++| ..+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~----G~v~-~~~~~~--------~~~g~afV~f~~~~~a~~A~~~l~g--~~~ 81 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALREL----GSVP-LRLTWQ--------GPRRRAFLHYPDSAAAQQAVSCLQG--LRL 81 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHT----TCCC-SEEEEE--------TTTTEEEEECSSHHHHHHHHHHHTT--CCS
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhc----CCEE-EEEEcC--------CCCcEEEEEECCHHHHHHHHHHhCC--CEE
Confidence 446899999999999999999999999 9996 555532 6799999999999999999999886 455
No 196
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.31 E-value=7.8e-12 Score=109.69 Aligned_cols=66 Identities=21% Similarity=0.305 Sum_probs=62.0
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
...++|||+|||.++|+++|+++|++| |.|.+|+++++..+ .++|+|||+|.+.++|.+|++.++|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~----G~i~~v~~~~~~~g-----~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSF----GQIEECRILRGPDG-----LSRGCAFVTFTTRAMAQTAIKAMHQ 158 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTS-----CEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhC----CCEEEEEEEECCCC-----CEEEEEEEEECCHHHHHHHHHHhcC
Confidence 467899999999999999999999999 99999999988765 7899999999999999999999996
No 197
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=3.4e-12 Score=101.05 Aligned_cols=62 Identities=18% Similarity=0.223 Sum_probs=56.2
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| |.|..|.|+ ++||||+|.+.++|++|+..+++ ..+
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~v~~v~~~------------~~~afV~f~~~~~a~~A~~~l~g--~~~ 69 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEY----GPVIECDIV------------KDYAFVHMERAEDAVEAIRGLDN--TEF 69 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTT----SCCCEEEEC------------SSEEEEEESCHHHHHHHHHHHTT--EEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEE------------CCEEEEEECCHHHHHHHHHHhCC--Cee
Confidence 456899999999999999999999999 999999886 45999999999999999999886 455
No 198
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.31 E-value=1.2e-11 Score=98.76 Aligned_cols=77 Identities=9% Similarity=0.207 Sum_probs=69.4
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEE
Q psy5142 275 GALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVS 348 (410)
Q Consensus 275 g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~ 348 (410)
.+.|+|.|||..+++++|+++|++|| .|..|.+..+ .++|||+|.+.++|++|++.| ++..++|+.|.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G----~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~ 75 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVG----PVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNL--NGYQLGSRFLK 75 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTS----CEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHH--TTCEETTEECE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcC----CEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHh--CCCeECCeEEE
Confidence 46899999999999999999999999 9999998765 457999999999999999999 67999999999
Q ss_pred EEecCchHH
Q psy5142 349 IEVVTGEEE 357 (410)
Q Consensus 349 v~~l~g~eE 357 (410)
|........
T Consensus 76 V~~a~~~~~ 84 (96)
T 2x1f_A 76 CGYSSNSDI 84 (96)
T ss_dssp EEECSCSSG
T ss_pred EEEcCCCCC
Confidence 998876543
No 199
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.31 E-value=4.8e-12 Score=101.55 Aligned_cols=63 Identities=16% Similarity=0.339 Sum_probs=57.1
Q ss_pred hccceeeEeecCCC-CCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCc
Q psy5142 116 DLIAQSLYVKYIPV-DATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNL 194 (410)
Q Consensus 116 ~~~~rtv~V~~lp~-~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~ 194 (410)
....++|||+|||+ ++|+++|+++|++| |.|..|.|. +|||||+|.+.++|.+|+..++| .
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~----G~v~~v~i~------------~g~afV~f~~~~~A~~Ai~~l~g--~ 80 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPY----GHIMQINIK------------NAFGFIQFDNPQSVRDAIEXESQ--E 80 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGG----SCEEEEEEC------------SSEEEEEESSHHHHHHHHHHHTT--S
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhc----CCEEEEEEe------------CCEEEEEECCHHHHHHHHHHcCC--C
Confidence 35679999999998 99999999999999 999999873 78999999999999999999886 4
Q ss_pred cc
Q psy5142 195 KF 196 (410)
Q Consensus 195 ~~ 196 (410)
.+
T Consensus 81 ~~ 82 (97)
T 2xnq_A 81 MN 82 (97)
T ss_dssp EE
T ss_pred EE
Confidence 45
No 200
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=1.9e-11 Score=97.06 Aligned_cols=77 Identities=14% Similarity=0.216 Sum_probs=68.6
Q ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCeEEcC
Q psy5142 271 ELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE------PTAFVRYKKENNAEAVLKALGSKEIVIKD 344 (410)
Q Consensus 271 ~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~~i~g 344 (410)
..++.++|+|.|||+.+++++|+++|++|| .|..|.+..+. ++|||+|.+.++|++|+..| ++..++|
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G----~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g 84 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYG----PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA--NGMELDG 84 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTS----CEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHH--TTEEETT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcC----CeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHh--CCCEECC
Confidence 346678999999999999999999999999 99999987542 36999999999999999999 6899999
Q ss_pred eEEEEEecC
Q psy5142 345 VKVSIEVVT 353 (410)
Q Consensus 345 ~~v~v~~l~ 353 (410)
+.|.|....
T Consensus 85 ~~l~v~~a~ 93 (95)
T 2cqc_A 85 RRIRVSGPS 93 (95)
T ss_dssp EEEEEECCS
T ss_pred EEEEEEecC
Confidence 999998754
No 201
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=2.5e-11 Score=97.34 Aligned_cols=75 Identities=16% Similarity=0.274 Sum_probs=68.1
Q ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhc--CCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEE
Q psy5142 271 ELPTGALLKISDIKEPVSREDIREVLEKV--QTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVS 348 (410)
Q Consensus 271 ~~~~g~~l~v~nL~~~~t~edLk~~F~~~--G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~ 348 (410)
...+.++|||.|||+.+++++|+++|++| | .|..|.+.+ ++|||+|.+.++|++|+..| ++..++|+.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g----~v~~~~~~~--g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPG----AVERVKKIR--DYAFVHFSNREDAVEAMKAL--NGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTT----CEEEEEECS--SEEEEEESSHHHHHHHHHHH--SSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCc----ceEEEEEeC--CeEEEEeCCHHHHHHHHHHh--CCCEeCCcEEE
Confidence 35667899999999999999999999999 8 899988876 59999999999999999999 78999999999
Q ss_pred EEecC
Q psy5142 349 IEVVT 353 (410)
Q Consensus 349 v~~l~ 353 (410)
|....
T Consensus 83 v~~a~ 87 (99)
T 2cpd_A 83 VTLAK 87 (99)
T ss_dssp EECCC
T ss_pred EEECC
Confidence 98754
No 202
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.30 E-value=1e-11 Score=97.01 Aligned_cols=74 Identities=20% Similarity=0.360 Sum_probs=66.7
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeC-------CCceEEEEeCChhHHHHHHHHhcCCCeEEcCeE
Q psy5142 274 TGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNV-------GEPTAFVRYKKENNAEAVLKALGSKEIVIKDVK 346 (410)
Q Consensus 274 ~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~-------g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~ 346 (410)
..+.|+|.|||.++++++|+++|++|| .|..|.+.. ..++|||+|.+.++|++|+..| ++..++|+.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G----~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~ 76 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYG----KIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHM--DGGQIDGQE 76 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTS----CEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHH--TTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCC----CEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHc--CCCeECCeE
Confidence 356899999999999999999999999 999998864 3457999999999999999999 689999999
Q ss_pred EEEEecC
Q psy5142 347 VSIEVVT 353 (410)
Q Consensus 347 v~v~~l~ 353 (410)
|.|....
T Consensus 77 l~v~~a~ 83 (88)
T 4a8x_A 77 ITATAVL 83 (88)
T ss_dssp CEEEEEC
T ss_pred EEEEECC
Confidence 9999765
No 203
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.30 E-value=3.9e-12 Score=113.66 Aligned_cols=68 Identities=16% Similarity=0.254 Sum_probs=62.4
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
..++|||+|||+++|+++|+++|++| |.|..|.|+.+..+ .++|||||+|.+.++|++|++.++| ..+
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~----G~I~~v~i~~d~~g-----~~kG~afV~F~~~~~A~~Ai~~lng--~~l 154 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEF----GTLKKAAVDYDRSG-----RSLGTADVHFERRADALKAMKQYKG--VPL 154 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHT----SCCSEEEECCCTTS-----SCSCCEEEEESCHHHHHHHHHHSTT--CBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECCCC-----CEeeEEEEEeCCHHHHHHHHHHhCC--CEE
Confidence 35899999999999999999999999 99999999988843 7899999999999999999999986 455
No 204
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.30 E-value=9e-12 Score=109.74 Aligned_cols=78 Identities=23% Similarity=0.289 Sum_probs=69.5
Q ss_pred cCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEc
Q psy5142 270 LELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIK 343 (410)
Q Consensus 270 ~~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~ 343 (410)
....++++|||.|||+.+++++|+++|++|| .|..|.+... .++|||.|.+.++|++||..| ++..|+
T Consensus 67 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G----~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~ 140 (165)
T 1rk8_A 67 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYG----EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL--NGAEIM 140 (165)
T ss_dssp CCCC-CEEEEEESCCTTCCHHHHHHHHGGGS----CEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHH--TTCEET
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhhcCC----CEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHh--CCCEEC
Confidence 3456688999999999999999999999999 9999999865 357999999999999999999 678999
Q ss_pred CeEEEEEecC
Q psy5142 344 DVKVSIEVVT 353 (410)
Q Consensus 344 g~~v~v~~l~ 353 (410)
|+.|.|....
T Consensus 141 g~~l~V~~a~ 150 (165)
T 1rk8_A 141 GQTIQVDWCF 150 (165)
T ss_dssp TEECEEEESE
T ss_pred CEEEEEEEec
Confidence 9999998865
No 205
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.30 E-value=1e-11 Score=98.67 Aligned_cols=76 Identities=11% Similarity=0.163 Sum_probs=68.1
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC-----ceEEEEeCChhHHHHHHHHhcCCCeEEcCeE
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE-----PTAFVRYKKENNAEAVLKALGSKEIVIKDVK 346 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~-----~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~ 346 (410)
.++.+.|+|.|||+.+++++|+++|++|| .|..|.+..+. ++|||+|.++++|++|+..| ++..++|+.
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G----~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~ 86 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAG----PLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALL--NGIRLYGRP 86 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGS----CEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHH--TTCEETTEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcC----CEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHh--CCCEECCCE
Confidence 45668999999999999999999999999 99999988653 47999999999999999999 678999999
Q ss_pred EEEEecC
Q psy5142 347 VSIEVVT 353 (410)
Q Consensus 347 v~v~~l~ 353 (410)
|.|....
T Consensus 87 l~V~~a~ 93 (95)
T 2ywk_A 87 INVSGPS 93 (95)
T ss_dssp CEEECCC
T ss_pred EEEEEcC
Confidence 9998753
No 206
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=2.6e-12 Score=106.18 Aligned_cols=64 Identities=16% Similarity=0.296 Sum_probs=58.2
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcc---cccccccccEEEEEecCHHHHHHHHHhcC
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDK---LANQKKFKGSIFVTFDNKENAEKFLNENK 190 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~---~~~~~~~kG~afVeF~~~e~A~~Al~~~~ 190 (410)
..++|||+|||+++|+++|+++|++| |.|. +.++.+..+ + .++|||||+|.+.++|++|++.++
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~----G~i~-~~~~~~~~~~~~g----~~~G~aFV~f~~~~~a~~Ai~~~~ 73 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRF----GPLV-VDWPHKAESKSYF----PPKGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTT----CCCC-EECTTSSSSCCCS----CTTSEEEECCSSHHHHHHHHHHSE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhc----CCEE-EEEeecCCCCCCC----CcccEEEEEECCHHHHHHHHHhhh
Confidence 46899999999999999999999999 9999 888877654 3 789999999999999999999883
No 207
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.30 E-value=3.5e-12 Score=103.24 Aligned_cols=61 Identities=20% Similarity=0.310 Sum_probs=55.6
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
..++|||+|||+++|+++|+++|++| |.|..|.|+ +|||||+|.+.++|++|++.+++ ..+
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~----G~i~~v~~~------------~~~afV~f~~~~~a~~A~~~l~g--~~~ 70 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQF----GKLERVKKL------------KDYAFIHFDERDGAVKAMEEMNG--KDL 70 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHH----SCEEEEEEC------------SSCEEEEESSHHHHHHHHHHHTT--EEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEE------------CCEEEEEeCCHHHHHHHHHHHCC--Ccc
Confidence 46899999999999999999999999 999999875 56999999999999999999886 455
No 208
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.8e-11 Score=97.06 Aligned_cols=76 Identities=12% Similarity=0.261 Sum_probs=68.2
Q ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcC
Q psy5142 271 ELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKD 344 (410)
Q Consensus 271 ~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g 344 (410)
..++.+.|+|.|||..+++++|+++|++|| .|..|.+..+ .++|||+|.+.++|++|++.| ++..++|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G----~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g 85 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYG----KVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI--NNKQLFG 85 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTS----CEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHT--TTEEETT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcC----CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHc--CCCeeCC
Confidence 345678999999999999999999999999 9999999764 247999999999999999999 6899999
Q ss_pred eEEEEEec
Q psy5142 345 VKVSIEVV 352 (410)
Q Consensus 345 ~~v~v~~l 352 (410)
+.|.|...
T Consensus 86 ~~l~v~~a 93 (94)
T 2e5h_A 86 RVIKASIA 93 (94)
T ss_dssp EEEEEEEC
T ss_pred cEEEEEec
Confidence 99999864
No 209
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=2.9e-12 Score=103.33 Aligned_cols=67 Identities=24% Similarity=0.316 Sum_probs=57.3
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|+.| +. |.++++..++ .++|||||+|.+.++|++|++.+++ ..+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----~~---~~~~~~~~~~----~~~g~afV~f~~~~~A~~A~~~l~g--~~~ 79 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGS----VR---ARIVTDRETG----SSKGFGFVDFNSEEDAKAAKEAMED--GEI 79 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTC----SE---EEEEECSSSC----SEEEEEEEECSSHHHHHHHHHHHTT--CEE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCC----eE---EEEEecCCCC----CcCcEEEEEECCHHHHHHHHHHhCC--CeE
Confidence 457999999999999999999999998 74 5555665554 7899999999999999999999886 455
No 210
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.5e-11 Score=98.76 Aligned_cols=76 Identities=16% Similarity=0.264 Sum_probs=68.8
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC-----ceEEEEeCChhHHHHHHHHhcCCCeEEcCeE
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE-----PTAFVRYKKENNAEAVLKALGSKEIVIKDVK 346 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~-----~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~ 346 (410)
..+.+.|+|.|||..+++++|+++|++|| .|..|.+..+. ++|||+|.+.++|++|+..| ++..++|+.
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G----~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~ 87 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHG----TVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKM--DGMTIKENI 87 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTS----CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHH--TTEESSSCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCC----CeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHh--CCCEECCEE
Confidence 35567899999999999999999999999 99999988754 57999999999999999999 679999999
Q ss_pred EEEEecC
Q psy5142 347 VSIEVVT 353 (410)
Q Consensus 347 v~v~~l~ 353 (410)
|.|....
T Consensus 88 l~v~~a~ 94 (100)
T 2do4_A 88 IKVAISN 94 (100)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 9999875
No 211
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.29 E-value=1.2e-11 Score=107.50 Aligned_cols=100 Identities=17% Similarity=0.213 Sum_probs=76.6
Q ss_pred cHHHHHHHHhhcCCceEEEecCccceecCCCCCCCCCchhhhhhccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEE
Q psy5142 73 EAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITN 152 (410)
Q Consensus 73 d~~~i~~Al~~~~S~~levsed~~~vrR~~~~p~p~~~~~~~~~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~ 152 (410)
+.+....||.. -+...+......|.... |.+ .....++|||+|||.++|+++|+++|++| |.|..
T Consensus 53 ~~~~A~~a~~~--l~~~~~~g~~l~v~~~~--~~~-------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~----G~i~~ 117 (167)
T 1fxl_A 53 DPKDAEKAINT--LNGLRLQTKTIKVSYAR--PSS-------ASIRDANLYVSGLPKTMTQKELEQLFSQY----GRIIT 117 (167)
T ss_dssp SHHHHHHHHHH--HTTCEETTEECEEEECC--CCC-------GGGTTCEEEEESCCTTCCHHHHHHHHGGG----SCEEE
T ss_pred CHHHHHHHHHH--cCCCccCCceEEEEecC--CCc-------ccCCCCcEEECCCCCcCCHHHHHHHHHhc----CCEeE
Confidence 45666667663 12344444334444432 211 12456899999999999999999999999 99999
Q ss_pred EEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 153 IIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 153 v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
|+++++..++ .++|+|||+|.+.++|.+|++.++|
T Consensus 118 ~~i~~~~~~g----~~~g~afV~f~~~~~A~~A~~~l~g 152 (167)
T 1fxl_A 118 SRILVDQVTG----VSRGVGFIRFDKRIEAEEAIKGLNG 152 (167)
T ss_dssp EEEEECTTTC----CEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred EEEEecCCCC----CccceEEEEeCCHHHHHHHHHHhcC
Confidence 9999887654 7899999999999999999999986
No 212
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.29 E-value=1.6e-11 Score=101.19 Aligned_cols=77 Identities=16% Similarity=0.242 Sum_probs=68.0
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeC--CCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEE
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNV--GEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIE 350 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~--g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~ 350 (410)
+.++.|+|.|||+++++++|+++|++|| ..|.+|.+.. ..++|||+|.+.++|++||+.| ++..++|+.|.|.
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G---~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~l--ng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENS---LETTFSSVNTRDFDGTGALEFPSEEILVEALERL--NNIEFRGSVITVE 100 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHT---CCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHT--TTEEETTEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhC---CeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHc--CCCEECCeEEEEE
Confidence 4578999999999999999999999999 2478888753 4568999999999999999999 7899999999999
Q ss_pred ecCc
Q psy5142 351 VVTG 354 (410)
Q Consensus 351 ~l~g 354 (410)
...+
T Consensus 101 ~a~~ 104 (111)
T 2jvr_A 101 RDDN 104 (111)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 8763
No 213
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=1.6e-11 Score=96.78 Aligned_cols=73 Identities=16% Similarity=0.312 Sum_probs=67.4
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEec
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVV 352 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l 352 (410)
++.+.|||.|||+++++++|+++|++|| .|..|.+.+ ++|||+|.+.++|++|+..| ++..++|+.|.|...
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G----~i~~v~~~~--g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYG----KVLECDIIK--NYGFVHIEDKTAAEDAIRNL--HHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSS----CEEEEEEET--TEEEEEESSHHHHHHHHHHH--TTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC----CEEEEEEEC--CEEEEEECCHHHHHHHHHHh--cCCccCCcEEEEEEC
Confidence 4568999999999999999999999999 999999984 79999999999999999999 678899999999875
Q ss_pred C
Q psy5142 353 T 353 (410)
Q Consensus 353 ~ 353 (410)
.
T Consensus 78 ~ 78 (90)
T 2dnq_A 78 K 78 (90)
T ss_dssp S
T ss_pred C
Confidence 4
No 214
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.29 E-value=1.3e-11 Score=107.56 Aligned_cols=100 Identities=19% Similarity=0.213 Sum_probs=76.2
Q ss_pred cHHHHHHHHhhcCCceEEEecCccceecCCCCCCCCCchhhhhhccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEE
Q psy5142 73 EAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITN 152 (410)
Q Consensus 73 d~~~i~~Al~~~~S~~levsed~~~vrR~~~~p~p~~~~~~~~~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~ 152 (410)
+.+....|+.. .+...+......|.... |.+ .....++|||+|||.++|+++|+++|++| |.|..
T Consensus 54 ~~~~A~~a~~~--l~~~~~~g~~l~v~~~~--~~~-------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~----G~i~~ 118 (168)
T 1b7f_A 54 SEMDSQRAIKV--LNGITVRNKRLKVSYAR--PGG-------ESIKDTNLYVTNLPRTITDDQLDTIFGKY----GSIVQ 118 (168)
T ss_dssp SHHHHHHHHHH--HTTCEETTEECEEEECC--CCS-------STTTTCEEEEESCCTTCCHHHHHHHHTSS----SCEEE
T ss_pred CHHHHHHHHHh--cCCCEeCCcEEEEEecC--CCc-------ccCCCCCEEEeCCCCCCCHHHHHHhhhcC----CcEEE
Confidence 45666666652 22344443333444432 211 12456899999999999999999999999 99999
Q ss_pred EEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 153 IIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 153 v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
|.++++..++ .++|+|||+|.+.++|.+|+..++|
T Consensus 119 ~~i~~~~~~~----~~~g~afV~f~~~~~A~~A~~~l~g 153 (168)
T 1b7f_A 119 KNILRDKLTG----RPRGVAFVRYNKREEAQEAISALNN 153 (168)
T ss_dssp EEEEECTTTC----CEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred EEEEEcCCCC----CcceEEEEEECCHHHHHHHHHHhcC
Confidence 9999987554 7899999999999999999999986
No 215
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=3.4e-11 Score=99.47 Aligned_cols=76 Identities=14% Similarity=0.130 Sum_probs=67.7
Q ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCeEEcC
Q psy5142 271 ELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE------PTAFVRYKKENNAEAVLKALGSKEIVIKD 344 (410)
Q Consensus 271 ~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~~i~g 344 (410)
.....+.|||.|||+.+++++|+++|++|| .|..|.+..+. ++|||+|.+.++|++|+..+ ++ .++|
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~--~~-~~~g 85 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFG----DIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDP--NP-IIDG 85 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTS----CEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCS--SC-EETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCC----CeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhC--CC-cCCC
Confidence 345678999999999999999999999999 99999998753 47999999999999999999 45 7999
Q ss_pred eEEEEEecC
Q psy5142 345 VKVSIEVVT 353 (410)
Q Consensus 345 ~~v~v~~l~ 353 (410)
+.|.|....
T Consensus 86 ~~l~V~~a~ 94 (116)
T 2cqd_A 86 RKANVNLAY 94 (116)
T ss_dssp EECEEEEST
T ss_pred EEEEEEEcc
Confidence 999999864
No 216
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.29 E-value=7.8e-12 Score=100.67 Aligned_cols=75 Identities=13% Similarity=0.191 Sum_probs=69.2
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEec
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVV 352 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l 352 (410)
+.++.|||.|||..+++++|+++|++|| .|..|.+.+..++|||+|.+.++|.+|+..| ++..++|+.|.|...
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G----~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFG----FILDFKHYPEKGCCFIKYDTHEQAAVCIVAL--ANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTS----CCSEEEEETTTTEEEEECSSHHHHHHHHHHH--TTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCC----CEEEEEEecCCCEEEEEECCHHHHHHHHHHh--CCCeECCeEEEEEec
Confidence 4568999999999999999999999999 9999999988999999999999999999999 688999999988764
Q ss_pred C
Q psy5142 353 T 353 (410)
Q Consensus 353 ~ 353 (410)
.
T Consensus 99 ~ 99 (101)
T 2la4_A 99 K 99 (101)
T ss_dssp C
T ss_pred c
Confidence 3
No 217
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.29 E-value=5.1e-12 Score=114.98 Aligned_cols=70 Identities=20% Similarity=0.284 Sum_probs=64.1
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||.++|+++|+++|++| |.|..|+|+++..++ .++|+|||+|.+.++|.+|+..++| ..+
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~~g----~~~g~afV~F~~~~~A~~A~~~l~g--~~~ 192 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAF----GKIKSATLARDPTTG----KHKGYGFIEYEKAQSSQDAVSSMNL--FDL 192 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTS----SCEEEEEEEECTTTC----CEEEEEEEEESSHHHHHHHHHHHTT--CBC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhcc----CCeeEEEEEecCCCC----CcCceEEEEecCHHHHHHHHHHccC--CEe
Confidence 456899999999999999999999999 999999999987665 7899999999999999999999986 456
No 218
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.29 E-value=2.3e-12 Score=102.78 Aligned_cols=66 Identities=26% Similarity=0.415 Sum_probs=57.1
Q ss_pred hccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcc
Q psy5142 116 DLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLK 195 (410)
Q Consensus 116 ~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~ 195 (410)
+...++|||+|||+++|+++|+++|++| |.|..+ . .++ .++|||||+|.+.++|.+|+..++| ..
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~----g~v~~~----~-~~~----~~~g~afV~f~~~~~a~~A~~~l~g--~~ 77 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDA----LEIRLV----S-QDG----KSKGIAYIEFKSEADAEKNLEEKQG--AE 77 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSE----EEECCE----E-ETT----EEEEEEEEEESSHHHHHHHHHHTTE--EE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC----CcEEEe----C-CCC----CcceEEEEEECCHHHHHHHHHHhCC--CE
Confidence 3567999999999999999999999999 998766 1 222 6899999999999999999999886 45
Q ss_pred c
Q psy5142 196 F 196 (410)
Q Consensus 196 ~ 196 (410)
+
T Consensus 78 ~ 78 (96)
T 1fjc_A 78 I 78 (96)
T ss_dssp E
T ss_pred E
Confidence 5
No 219
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.28 E-value=2.6e-11 Score=100.00 Aligned_cols=77 Identities=13% Similarity=0.169 Sum_probs=69.5
Q ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCeEEcC
Q psy5142 271 ELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE------PTAFVRYKKENNAEAVLKALGSKEIVIKD 344 (410)
Q Consensus 271 ~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~~i~g 344 (410)
.....+.|||.|||..+++++|+++|++|| .|..|.+..+. ++|||+|.+.++|++|+..| ++..++|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g 84 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFG----RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM--GGQWLGG 84 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGS----CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHT--TTCEETT
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC----CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHh--CCCEECC
Confidence 345678999999999999999999999999 99999998653 47999999999999999999 6789999
Q ss_pred eEEEEEecC
Q psy5142 345 VKVSIEVVT 353 (410)
Q Consensus 345 ~~v~v~~l~ 353 (410)
+.|.|....
T Consensus 85 ~~l~V~~a~ 93 (115)
T 2dgo_A 85 RQIRTNWAT 93 (115)
T ss_dssp EECEEEESS
T ss_pred EEEEEEEcc
Confidence 999999865
No 220
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.28 E-value=6.4e-12 Score=98.11 Aligned_cols=67 Identities=21% Similarity=0.322 Sum_probs=55.8
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCC-------ceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDV-------KITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNEN 189 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G-------~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~ 189 (410)
...++|||+|||+++|+++|+++|++|....| .|.++.+.+ .+|||||+|.+.++|++|+ .+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~----------~kg~afV~f~~~~~a~~A~-~l 72 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ----------DKNFAFLEFRSVDETTQAM-AF 72 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS----------SSSEEEEEESSHHHHHHHG-GG
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC----------CCcEEEEEcCCHHHHHHHH-hc
Confidence 35789999999999999999999999810002 799988863 4899999999999999999 88
Q ss_pred CCCCccc
Q psy5142 190 KDKNLKF 196 (410)
Q Consensus 190 ~g~~~~~ 196 (410)
+| ..+
T Consensus 73 ~g--~~~ 77 (87)
T 2hzc_A 73 DG--IIF 77 (87)
T ss_dssp TT--CEE
T ss_pred CC--CEE
Confidence 86 455
No 221
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.28 E-value=5e-12 Score=103.58 Aligned_cols=64 Identities=23% Similarity=0.440 Sum_probs=57.9
Q ss_pred hhccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCc
Q psy5142 115 KDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNL 194 (410)
Q Consensus 115 ~~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~ 194 (410)
.+...++|||+|||.++|+++|+++|++| |.|..|.|. +|||||+|.+.++|++|+..++| .
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~----G~i~~v~i~------------kg~afV~f~~~~~A~~Ai~~l~g--~ 88 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPF----GPMKEVKIL------------NGFAFVEFEEAESAAKAIEEVHG--K 88 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTT----SCCCEEEEE------------TTEEEEECSSHHHHHHHHHHHTT--C
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhc----CCEEEEEEE------------CCEEEEEECCHHHHHHHHHHcCC--C
Confidence 34678999999999999999999999999 999999885 68999999999999999999886 4
Q ss_pred cc
Q psy5142 195 KF 196 (410)
Q Consensus 195 ~~ 196 (410)
.+
T Consensus 89 ~~ 90 (108)
T 2jvo_A 89 SF 90 (108)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 222
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.28 E-value=1.5e-11 Score=99.00 Aligned_cols=72 Identities=15% Similarity=0.257 Sum_probs=66.7
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC-CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEecC
Q psy5142 276 ALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG-EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVT 353 (410)
Q Consensus 276 ~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g-~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l~ 353 (410)
+.|+|.|||+++++++|+++|++|| .|..|.+..+ .++|||+|.+.++|++|+..| ++..++|+.|.|....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G----~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYG----PLRTVWIARNPPGFAFVEFEDPRDAEDAVRGL--DGKVICGSRVRVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHC----CCSEEEEESSSSSEEEEECSSHHHHHHHHHHH--HHSCSSSCCCEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC----CeEEEEEeeCCCCEEEEEECCHHHHHHHHHHH--CCCeECCcEEEEEEcc
Confidence 4799999999999999999999999 9999999886 789999999999999999999 5678999999999865
No 223
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.27 E-value=2.6e-11 Score=97.25 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=68.7
Q ss_pred cCCCCCeEEEEeCCCC-CCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEE
Q psy5142 270 LELPTGALLKISDIKE-PVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVS 348 (410)
Q Consensus 270 ~~~~~g~~l~v~nL~~-~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~ 348 (410)
...++.+.|||.|||+ .+++++|+++|++|| .|..|.+. .++|||+|.+.++|++|+..| ++..++|+.|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G----~v~~v~i~--~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYG----HIMQINIK--NAFGFIQFDNPQSVRDAIEXE--SQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGS----CEEEEEEC--SSEEEEEESSHHHHHHHHHHH--TTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcC----CEEEEEEe--CCEEEEEECCHHHHHHHHHHc--CCCEECCEEEE
Confidence 3456788999999998 999999999999999 99999986 479999999999999999999 67899999999
Q ss_pred EEecCc
Q psy5142 349 IEVVTG 354 (410)
Q Consensus 349 v~~l~g 354 (410)
|....+
T Consensus 89 V~~a~~ 94 (97)
T 2xnq_A 89 LEVSSS 94 (97)
T ss_dssp EEECCC
T ss_pred EEecCC
Confidence 988653
No 224
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=1.4e-11 Score=99.51 Aligned_cols=77 Identities=18% Similarity=0.277 Sum_probs=69.0
Q ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcC
Q psy5142 271 ELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKD 344 (410)
Q Consensus 271 ~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g 344 (410)
...+.+.|||.|||..+++++|+++|++|| .|..|.+..+ .++|||+|.+.++|++|+..| ++..++|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G----~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g 82 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYG----RVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAM--DGAELDG 82 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTS----CEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHH--SSCCBTT
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcC----CEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHc--CCCEECC
Confidence 345678999999999999999999999999 9999998764 347999999999999999999 6788999
Q ss_pred eEEEEEecC
Q psy5142 345 VKVSIEVVT 353 (410)
Q Consensus 345 ~~v~v~~l~ 353 (410)
+.|.|....
T Consensus 83 ~~l~V~~a~ 91 (103)
T 2dnm_A 83 RELRVQVAR 91 (103)
T ss_dssp BCCEEEECS
T ss_pred cEEEEEECC
Confidence 999999864
No 225
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.27 E-value=2.7e-11 Score=99.01 Aligned_cols=78 Identities=23% Similarity=0.289 Sum_probs=69.9
Q ss_pred cCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEc
Q psy5142 270 LELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIK 343 (410)
Q Consensus 270 ~~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~ 343 (410)
....++++|+|.|||..+++++|+++|++|| .|..|.+..+ .++|||+|.+.++|++|+..| ++..++
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G----~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~ 94 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYG----EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL--NGAEIM 94 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGS----CEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHH--TTCEET
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC----CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHc--CCCEEC
Confidence 3456778999999999999999999999999 9999999765 357999999999999999999 678999
Q ss_pred CeEEEEEecC
Q psy5142 344 DVKVSIEVVT 353 (410)
Q Consensus 344 g~~v~v~~l~ 353 (410)
|+.|.|....
T Consensus 95 g~~l~V~~a~ 104 (110)
T 1oo0_B 95 GQTIQVDWCF 104 (110)
T ss_dssp TEECEEEESE
T ss_pred CcEEEEEEcc
Confidence 9999998764
No 226
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.27 E-value=6.6e-12 Score=100.34 Aligned_cols=74 Identities=18% Similarity=0.305 Sum_probs=66.4
Q ss_pred CCCCeEEEEeCCCC-CCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEE
Q psy5142 272 LPTGALLKISDIKE-PVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIE 350 (410)
Q Consensus 272 ~~~g~~l~v~nL~~-~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~ 350 (410)
.++.+.|||.|||+ .+++++|+++|++|| .|..|.+.+ ++|||+|.+.++|++|+..| ++..+.|+.|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G----~v~~v~i~~--g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYG----HIMQINIKN--AFGFIQFDNPQSVRDAIECE--SQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTC----CCCEEEEET--TEEEEEESCHHHHHHHHHHH--TCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcC----CEEEEEEeC--CEEEEEECCHHHHHHHHHHc--CCCeeCCcEEEEE
Confidence 46788999999998 999999999999999 999999974 69999999999999999999 6788899999998
Q ss_pred ecC
Q psy5142 351 VVT 353 (410)
Q Consensus 351 ~l~ 353 (410)
...
T Consensus 79 ~a~ 81 (96)
T 2kvi_A 79 VSS 81 (96)
T ss_dssp EEE
T ss_pred EcC
Confidence 754
No 227
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=1.5e-11 Score=100.81 Aligned_cols=77 Identities=18% Similarity=0.305 Sum_probs=69.4
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC----CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEE
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG----EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKV 347 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g----~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v 347 (410)
....+.|||.|||..+++++|+++|++|| .|..|.+..+ .++|||+|.+.++|++|+..| ++..++|+.|
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G----~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l 99 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFG----KILDVEIIFNERGSKGFGFVTFENSADADRAREKL--HGTVVEGRKI 99 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTC----CCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHH--TTCEETTEEC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcC----CEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHc--CCCEECCEEE
Confidence 45678999999999999999999999999 9999988765 568999999999999999999 6789999999
Q ss_pred EEEecCc
Q psy5142 348 SIEVVTG 354 (410)
Q Consensus 348 ~v~~l~g 354 (410)
.|.....
T Consensus 100 ~V~~a~~ 106 (109)
T 2err_A 100 EVNNATA 106 (109)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9988653
No 228
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=1.4e-11 Score=99.34 Aligned_cols=75 Identities=16% Similarity=0.277 Sum_probs=68.1
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCeE
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDVK 346 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~ 346 (410)
++.+.|||.|||..+++++|+++|++|| .|..|.+..+ .++|||+|.+.++|++|++.| ++..++|+.
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G----~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~ 83 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFG----DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM--NESELFGRT 83 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTS----CCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHH--TTEEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccC----CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHh--CCCEECCcE
Confidence 4567999999999999999999999999 9999988654 457999999999999999999 689999999
Q ss_pred EEEEecC
Q psy5142 347 VSIEVVT 353 (410)
Q Consensus 347 v~v~~l~ 353 (410)
|.|....
T Consensus 84 l~V~~a~ 90 (102)
T 2cqb_A 84 IRVNLAK 90 (102)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 9999865
No 229
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.26 E-value=9.8e-12 Score=98.19 Aligned_cols=55 Identities=20% Similarity=0.423 Sum_probs=49.8
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHH
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEK 184 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~ 184 (410)
....+|||+|||+++|+++|+++|++| |.|.+|+|++ .++|||||+|.+.++|++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~----G~i~~v~i~~---------~srGfaFV~F~~~~~A~~ 63 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQY----GEVVDVFIPK---------PFRAFAFVTFADDKVAQS 63 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEECCS---------SCCSEEEEEESCHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcc----CCEEEEEEee---------CCCCEEEEEECCHHHHHH
Confidence 456899999999999999999999999 9999999986 368999999999999984
No 230
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.26 E-value=1e-11 Score=98.09 Aligned_cols=76 Identities=4% Similarity=0.225 Sum_probs=67.7
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC----CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEE
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG----EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKV 347 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g----~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v 347 (410)
.++.+.|+|.|||..+++++|+++|++|| .|..|.+... .++|||+|.+.++|++|+..| ++..++|+.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G----~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l--~g~~~~g~~l 78 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECG----HVLYADIKMENGKSKGCGVVKFESPEVAERACRMM--NGMKLSGREI 78 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTS----CEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHH--TTCCBTTBCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC----CEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHh--CCCEECCcEE
Confidence 35678999999999999999999999999 9999988763 246999999999999999999 6788999999
Q ss_pred EEEecC
Q psy5142 348 SIEVVT 353 (410)
Q Consensus 348 ~v~~l~ 353 (410)
.|+...
T Consensus 79 ~v~~a~ 84 (92)
T 2dgv_A 79 DVRIDR 84 (92)
T ss_dssp CCEECS
T ss_pred EEEEcC
Confidence 998764
No 231
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.26 E-value=1.5e-11 Score=98.43 Aligned_cols=75 Identities=23% Similarity=0.307 Sum_probs=66.7
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC---------CceEEEEeCChhHHHHHHHHhcCCCeEEc
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG---------EPTAFVRYKKENNAEAVLKALGSKEIVIK 343 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g---------~~~afV~F~~~e~A~~Al~~l~~~~~~i~ 343 (410)
++.+.|||.|||+.+++++|+++|++|| .|..|.+..+ .++|||+|.+.++|++|+..| ++..++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G----~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~ 76 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVG----AIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQL--QGHTVD 76 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTS----CEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHS--TTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC----CeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHh--CCCeeC
Confidence 3567899999999999999999999999 9999988742 247999999999999999999 678999
Q ss_pred CeEEEEEecC
Q psy5142 344 DVKVSIEVVT 353 (410)
Q Consensus 344 g~~v~v~~l~ 353 (410)
|+.|.|....
T Consensus 77 g~~l~V~~a~ 86 (98)
T 2cpf_A 77 GHKLEVRISE 86 (98)
T ss_dssp TEECEEECSS
T ss_pred CeEEEEEEcc
Confidence 9999998764
No 232
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.26 E-value=2e-11 Score=100.74 Aligned_cols=77 Identities=18% Similarity=0.301 Sum_probs=68.8
Q ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCeEEcC
Q psy5142 271 ELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE------PTAFVRYKKENNAEAVLKALGSKEIVIKD 344 (410)
Q Consensus 271 ~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~~i~g 344 (410)
..+..+.|||.|||.++++++|+++|++|| .|..|.+..+. ++|||+|.+.++|++|+..| ++..++|
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G----~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g 94 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFG----NVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM--NGFQIGM 94 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGS----CCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHH--TTCEETT
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC----CeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHc--CCCEECC
Confidence 345668999999999999999999999999 99999888654 36999999999999999999 6789999
Q ss_pred eEEEEEecC
Q psy5142 345 VKVSIEVVT 353 (410)
Q Consensus 345 ~~v~v~~l~ 353 (410)
+.|.|....
T Consensus 95 ~~l~V~~a~ 103 (115)
T 2cpz_A 95 KRLKVQLKR 103 (115)
T ss_dssp EECEEECCC
T ss_pred EEEEEEEcC
Confidence 999999764
No 233
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.26 E-value=3.4e-11 Score=98.43 Aligned_cols=79 Identities=14% Similarity=0.330 Sum_probs=69.5
Q ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCC----Ce
Q psy5142 271 ELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSK----EI 340 (410)
Q Consensus 271 ~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~----~~ 340 (410)
...+.+.|||.|||+.+++++|+++|++|| .|..|.+..+ .++|||+|.+.++|++|+..++.+ +.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G----~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~ 86 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFG----DLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGL 86 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTS----CEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCE
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcC----CeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCc
Confidence 345678999999999999999999999999 9999998854 457999999999999999999422 89
Q ss_pred EEcCeEEEEEecC
Q psy5142 341 VIKDVKVSIEVVT 353 (410)
Q Consensus 341 ~i~g~~v~v~~l~ 353 (410)
.++|+.|.|....
T Consensus 87 ~~~g~~l~v~~a~ 99 (111)
T 1x4h_A 87 KLDGRQLKVDLAV 99 (111)
T ss_dssp ESSSCEEEEECCC
T ss_pred EEcCEEEEEEECC
Confidence 9999999999765
No 234
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=2e-11 Score=99.11 Aligned_cols=77 Identities=21% Similarity=0.324 Sum_probs=68.7
Q ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcC
Q psy5142 271 ELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKD 344 (410)
Q Consensus 271 ~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g 344 (410)
...+++.|+|.|||..+++++|+++|++|| .|..|.+..+ .++|||+|.+.++|++|+..| ++..++|
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g 92 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYG----EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL--NGQDLMG 92 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGS----CEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHH--TTCBSSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccC----CeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHh--cCCEECC
Confidence 456678999999999999999999999999 9999998754 246999999999999999999 6789999
Q ss_pred eEEEEEecC
Q psy5142 345 VKVSIEVVT 353 (410)
Q Consensus 345 ~~v~v~~l~ 353 (410)
+.|.|....
T Consensus 93 ~~l~V~~a~ 101 (106)
T 1p27_B 93 QPISVDWCF 101 (106)
T ss_dssp SBCEEEESE
T ss_pred cEEEEEeec
Confidence 999998764
No 235
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=1.1e-11 Score=98.51 Aligned_cols=63 Identities=14% Similarity=0.178 Sum_probs=54.0
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
..++|||+|||+++|+++|+++|++| |.|.+| +.+..++ + ||||+|.+.++|++|++ ++| ..+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~----G~v~~v--~~~~~~g------~-~afV~f~~~~~a~~ai~-l~g--~~~ 69 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAF----GPVASV--VMDKDKG------V-FAIVEMGDVGAREAVLS-QSQ--HSL 69 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGT----SCEEEE--EECSSSC------C-EEEEEESSHHHHHHHHT-CSC--CEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhc----CCeEEE--EEcCCCC------c-EEEEEECCHHHHHHHHh-cCC--eEE
Confidence 45899999999999999999999999 999988 3333332 2 99999999999999999 886 556
No 236
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.26 E-value=8.5e-12 Score=103.30 Aligned_cols=62 Identities=19% Similarity=0.282 Sum_probs=55.4
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
..++|||+|||+++|+++|+++|++| |.|..|.|+. . |||||+|.+.++|++||+.++| ..+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~----G~v~~~~i~~---------~--g~afV~f~~~~~a~~Ai~~l~g--~~~ 76 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREA----GDVCYADVYR---------D--GTGVVEFVRKEDMTYAVRKLDN--TKF 76 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGG----SCEEEEEECT---------T--SEEEEEESSHHHHHHHHHHHTT--CBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEec---------C--CEEEEEECCHHHHHHHHHHhCC--CEE
Confidence 46899999999999999999999999 9999999864 2 8999999999999999999986 445
No 237
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=2.1e-11 Score=98.75 Aligned_cols=77 Identities=17% Similarity=0.245 Sum_probs=69.1
Q ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCeEEcC
Q psy5142 271 ELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE------PTAFVRYKKENNAEAVLKALGSKEIVIKD 344 (410)
Q Consensus 271 ~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~~i~g 344 (410)
...+.+.|||.|||+.+++++|+++|++|| .|..|.+..+. ++|||+|.+.++|++|+..| ++..++|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g 84 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAG----PVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM--DMIKLYG 84 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTS----CEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHS--SSCBCSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcC----CeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHh--CCCeECC
Confidence 345678999999999999999999999999 99999987653 37999999999999999999 6788999
Q ss_pred eEEEEEecC
Q psy5142 345 VKVSIEVVT 353 (410)
Q Consensus 345 ~~v~v~~l~ 353 (410)
+.|.|....
T Consensus 85 ~~l~v~~a~ 93 (105)
T 1x5u_A 85 KPIRVNKAS 93 (105)
T ss_dssp CBCEEEETT
T ss_pred eEEEEEECC
Confidence 999999865
No 238
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=1.2e-11 Score=100.93 Aligned_cols=79 Identities=23% Similarity=0.262 Sum_probs=69.7
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCC-eeEEEee-------CCCceEEEEeCChhHHHHHHHHhcCCCeEEcC
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQE-IVFIEFN-------VGEPTAFVRYKKENNAEAVLKALGSKEIVIKD 344 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~-V~~V~~~-------~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g 344 (410)
...+.|||.|||+.+++++|+++|++|| . |..|.+. ...++|||+|.+.++|++|+..|+++++.++|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G----~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g 81 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVT----EGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG 81 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHS----TTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhc----CCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC
Confidence 4568999999999999999999999999 8 9999887 34568999999999999999999544689999
Q ss_pred eEEEEEecCch
Q psy5142 345 VKVSIEVVTGE 355 (410)
Q Consensus 345 ~~v~v~~l~g~ 355 (410)
+.|.|......
T Consensus 82 ~~l~V~~a~~~ 92 (109)
T 2dis_A 82 HQIAVDWAEPE 92 (109)
T ss_dssp BCCEEEESCSS
T ss_pred CeEEEEEcCCC
Confidence 99999987643
No 239
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.25 E-value=8.2e-12 Score=116.13 Aligned_cols=81 Identities=16% Similarity=0.174 Sum_probs=68.2
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCeEEcCeEE
Q psy5142 274 TGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE------PTAFVRYKKENNAEAVLKALGSKEIVIKDVKV 347 (410)
Q Consensus 274 ~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v 347 (410)
..+.|||.|||+.+++++|+++|++||. ..|..|.+..+. ++|||.|.+.++|++||+.| ++..|+|+.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~--~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~l--ng~~~~Gr~l 142 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGV--NDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLL--PKRELHGQNP 142 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTC--CCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTS--TTSCBTTBCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCC--cceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHc--CCCeECCEEe
Confidence 4578999999999999999999999992 158888887653 36999999999999999999 6789999999
Q ss_pred EEEecCchHHH
Q psy5142 348 SIEVVTGEEEQ 358 (410)
Q Consensus 348 ~v~~l~g~eE~ 358 (410)
.|.+.......
T Consensus 143 ~V~~a~~~~~~ 153 (229)
T 3q2s_C 143 VVTPVNKQFLS 153 (229)
T ss_dssp EEEECCHHHHH
T ss_pred EEEECCCCccc
Confidence 99998755444
No 240
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.25 E-value=1.2e-11 Score=100.13 Aligned_cols=75 Identities=17% Similarity=0.216 Sum_probs=67.4
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC-----CceEEEEeCChhHHHHHHHHhcCCCeEEcC---
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG-----EPTAFVRYKKENNAEAVLKALGSKEIVIKD--- 344 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g-----~~~afV~F~~~e~A~~Al~~l~~~~~~i~g--- 344 (410)
+..+.|||.|||..+++++|+++|++|| .|..|.+..+ .++|||+|.+.++|++|+..| ++..+.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G----~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~gg~~ 86 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFG----VIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHAL--HGSQTMPGAS 86 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTS----CEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHH--SSCCCCTTCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC----CeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHH--cCCccCCCCC
Confidence 5578999999999999999999999999 9999999876 357999999999999999999 5677777
Q ss_pred eEEEEEecC
Q psy5142 345 VKVSIEVVT 353 (410)
Q Consensus 345 ~~v~v~~l~ 353 (410)
+.|.|....
T Consensus 87 ~~l~V~~a~ 95 (105)
T 2dnh_A 87 SSLVVKFAD 95 (105)
T ss_dssp SCCEEEESC
T ss_pred ccEEEEECc
Confidence 999999876
No 241
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=1.1e-11 Score=100.10 Aligned_cols=76 Identities=9% Similarity=0.186 Sum_probs=68.6
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC----CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEE
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG----EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKV 347 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g----~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v 347 (410)
..+.+.|||.|||+.+++++|+++|++|| .|..|.+... .++|||+|.+.++|++|+..| ++..++|+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G----~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l 85 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFG----TITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEM--NGRIVATKPL 85 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTS----CEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHH--TTCBSSSSBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC----CEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHh--CCCEeCCcEE
Confidence 45678999999999999999999999999 9999998854 457999999999999999999 6788999999
Q ss_pred EEEecC
Q psy5142 348 SIEVVT 353 (410)
Q Consensus 348 ~v~~l~ 353 (410)
.|....
T Consensus 86 ~V~~a~ 91 (103)
T 2d9p_A 86 YVALAQ 91 (103)
T ss_dssp EEEECS
T ss_pred EEEEec
Confidence 999865
No 242
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.25 E-value=1.6e-11 Score=98.29 Aligned_cols=76 Identities=16% Similarity=0.202 Sum_probs=63.4
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCC--CeEEcCeEE
Q psy5142 276 ALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSK--EIVIKDVKV 347 (410)
Q Consensus 276 ~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~--~~~i~g~~v 347 (410)
.+|||.|||+.+|+++|+++|++|| ...|..|.+.++ +++|||+|.+.++|++|++.|++. .+.|+|+.|
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G--~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYA--SLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTC--CCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhC--CccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 4799999999999999999999999 123556777654 347999999999999999999643 368999999
Q ss_pred EEEecC
Q psy5142 348 SIEVVT 353 (410)
Q Consensus 348 ~v~~l~ 353 (410)
.|+...
T Consensus 88 ~V~~Ak 93 (95)
T 2lkz_A 88 GVDFAK 93 (95)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 998764
No 243
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.25 E-value=1.9e-11 Score=99.91 Aligned_cols=59 Identities=17% Similarity=0.228 Sum_probs=55.1
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
..++|||+|||+++|+++|+++|++| |.|..|.|+++ |||||+|.+.++|++||+.+++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~i~~~-----------g~afV~f~~~~~a~~Ai~~l~g 72 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREA----GDVCYADVYRD-----------GTGVVEFVRKEDMTYAVRKLDN 72 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGG----SCEEEEEEETT-----------TEEEEEESSHHHHHHHHHHSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CCEeEEEEecC-----------CEEEEEECCHHHHHHHHHHHCc
Confidence 46899999999999999999999999 99999998752 8999999999999999999986
No 244
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.25 E-value=1.6e-11 Score=112.46 Aligned_cols=69 Identities=17% Similarity=0.219 Sum_probs=62.0
Q ss_pred hccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCcc
Q psy5142 116 DLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLK 195 (410)
Q Consensus 116 ~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~ 195 (410)
....++|||+|||+++|+++|+++|++| |.|..|+|+++.. .++|||||+|.+.++|.+|++.++| ..
T Consensus 100 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~----G~i~~~~i~~d~~------~~~g~~fV~f~~~~~a~~Ai~~lng--~~ 167 (213)
T 4f02_A 100 KSGVGNIFIKNLDKSIDNKALYDTFSAF----GNILSCKVVCDEN------GSKGYGFVHFETQEAAERAIEKMNG--ML 167 (213)
T ss_dssp HHCTTEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEEETT------EEEEEEEEEESSHHHHHHHHHHHTT--CE
T ss_pred ccccccceECCcccccHHHHHHHHHhhc----CCeEEEEeeccCC------CCceEEEEEeCCHHHHHHHHHHhCC--CE
Confidence 3456799999999999999999999999 9999999998754 4699999999999999999999986 45
Q ss_pred c
Q psy5142 196 F 196 (410)
Q Consensus 196 ~ 196 (410)
+
T Consensus 168 ~ 168 (213)
T 4f02_A 168 L 168 (213)
T ss_dssp E
T ss_pred E
Confidence 6
No 245
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.24 E-value=2e-11 Score=97.29 Aligned_cols=80 Identities=15% Similarity=0.325 Sum_probs=70.5
Q ss_pred CCCCeEEEEeCCCCCCCHHHHH----HHHHhcCCCCCCeeEEEee---CCCceEEEEeCChhHHHHHHHHhcCCCeEEcC
Q psy5142 272 LPTGALLKISDIKEPVSREDIR----EVLEKVQTDDQEIVFIEFN---VGEPTAFVRYKKENNAEAVLKALGSKEIVIKD 344 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk----~~F~~~G~~~~~V~~V~~~---~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g 344 (410)
.++.+.|+|.|||+.+++++|+ ++|++|| .|..|.+. ...++|||+|.+.++|++|+..| ++..++|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G----~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g 78 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFG----QILDILVSRSLKMRGQAFVIFKEVSSATNALRSM--QGFPFYD 78 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGS----CEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHH--TTCEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCC----CEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHh--CCCEECC
Confidence 4567899999999999999999 9999999 99999887 34578999999999999999999 6789999
Q ss_pred eEEEEEecCchHH
Q psy5142 345 VKVSIEVVTGEEE 357 (410)
Q Consensus 345 ~~v~v~~l~g~eE 357 (410)
+.|.|.....+.+
T Consensus 79 ~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 79 KPMRIQYAKTDSD 91 (97)
T ss_dssp EECEEEECSSCCT
T ss_pred cEEEEEEccCCCc
Confidence 9999998875543
No 246
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=3.4e-11 Score=97.26 Aligned_cols=77 Identities=13% Similarity=0.292 Sum_probs=69.2
Q ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCeEEcC
Q psy5142 271 ELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE------PTAFVRYKKENNAEAVLKALGSKEIVIKD 344 (410)
Q Consensus 271 ~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~~i~g 344 (410)
...+.+.|||.|||..+++++|+++|++|| .|..|.+..+. ++|||+|.+.++|++|+..| ++..++|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G----~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g 84 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFG----SISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV--SGFGYDH 84 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTC----CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHT--TTCEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCC----CeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHc--CCCeeCC
Confidence 345678999999999999999999999999 99999998653 36999999999999999999 6789999
Q ss_pred eEEEEEecC
Q psy5142 345 VKVSIEVVT 353 (410)
Q Consensus 345 ~~v~v~~l~ 353 (410)
+.|.|....
T Consensus 85 ~~l~v~~a~ 93 (103)
T 2cq0_A 85 LILNVEWAK 93 (103)
T ss_dssp EECEEEESS
T ss_pred cEEEEEECC
Confidence 999999864
No 247
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.24 E-value=1.6e-11 Score=100.59 Aligned_cols=61 Identities=16% Similarity=0.330 Sum_probs=55.8
Q ss_pred cceeeEeecCCCC-CCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 118 IAQSLYVKYIPVD-ATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 118 ~~rtv~V~~lp~~-~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
..++|||+|||++ +|+++|+++|++| |.|..|.| ++|||||+|.+.++|++|++.+++ ..+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~----G~v~~v~i------------~~g~afV~f~~~~~A~~A~~~l~g--~~~ 87 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKY----GRVAGCSV------------HKGYAFVQYSNERHARAAVLGENG--RVL 87 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGG----SCCSEEEE------------ETTEEEEECSSSHHHHHHHHHHTT--CEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhC----CCeEEEEE------------eCCEEEEEECCHHHHHHHHHHcCC--CEE
Confidence 4589999999999 9999999999999 99999988 278999999999999999999886 455
No 248
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.24 E-value=3.3e-11 Score=96.67 Aligned_cols=77 Identities=12% Similarity=0.174 Sum_probs=67.8
Q ss_pred cCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeE--------EEeeCCC------ceEEEEeCChhHHHHHHHHh
Q psy5142 270 LELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVF--------IEFNVGE------PTAFVRYKKENNAEAVLKAL 335 (410)
Q Consensus 270 ~~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~--------V~~~~g~------~~afV~F~~~e~A~~Al~~l 335 (410)
...++.+.|+|.|||.++++++|+++|++|| .|.. |.+..+. ++|||+|.+.++|++|++.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G----~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l 83 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIG----IIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWF 83 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTS----CBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhC----CEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 4456678999999999999999999999999 8888 8887542 37999999999999999999
Q ss_pred cCCCeEEcCeEEEEEec
Q psy5142 336 GSKEIVIKDVKVSIEVV 352 (410)
Q Consensus 336 ~~~~~~i~g~~v~v~~l 352 (410)
++..++|+.|.|..+
T Consensus 84 --~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 84 --DGKEFSGNPIKVSFA 98 (99)
T ss_dssp --TTCBSSSSBCEEEEC
T ss_pred --CCCEeCCcEEEEEec
Confidence 678899999999865
No 249
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.24 E-value=4.5e-11 Score=97.81 Aligned_cols=74 Identities=18% Similarity=0.290 Sum_probs=67.1
Q ss_pred CCCCeEEEEeCCCCC-CCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEE
Q psy5142 272 LPTGALLKISDIKEP-VSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIE 350 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~-~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~ 350 (410)
....+.|||.|||+. +++++|+++|++|| .|..|.+. .++|||+|.+.++|++|+..| ++..++|+.|.|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G----~v~~v~i~--~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYG----RVAGCSVH--KGYAFVQYSNERHARAAVLGE--NGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGS----CCSEEEEE--TTEEEEECSSSHHHHHHHHHH--TTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCC----CeEEEEEe--CCEEEEEECCHHHHHHHHHHc--CCCEECCeEEEEE
Confidence 345689999999999 99999999999999 99999884 478999999999999999999 6789999999999
Q ss_pred ecC
Q psy5142 351 VVT 353 (410)
Q Consensus 351 ~l~ 353 (410)
...
T Consensus 96 ~a~ 98 (110)
T 1wf1_A 96 MAG 98 (110)
T ss_dssp ESC
T ss_pred ECC
Confidence 864
No 250
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.24 E-value=3.7e-11 Score=97.54 Aligned_cols=78 Identities=15% Similarity=0.254 Sum_probs=69.0
Q ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC-------CceEEEEeCChhHHHHHHHHhcCCCeEEc
Q psy5142 271 ELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG-------EPTAFVRYKKENNAEAVLKALGSKEIVIK 343 (410)
Q Consensus 271 ~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g-------~~~afV~F~~~e~A~~Al~~l~~~~~~i~ 343 (410)
.....+.|||.|||+.+++++|+++|++|| .|..|.+..+ .++|||+|.+.++|++|+..|+ ++..++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G----~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-~~~~~~ 85 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFG----ELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALC-HSTHLY 85 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTS----CEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHH-TCCBSS
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccC----CeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhc-cCCeEC
Confidence 345678999999999999999999999999 9999999876 4679999999999999999993 257889
Q ss_pred CeEEEEEecC
Q psy5142 344 DVKVSIEVVT 353 (410)
Q Consensus 344 g~~v~v~~l~ 353 (410)
|+.|.|....
T Consensus 86 g~~l~v~~a~ 95 (107)
T 2cph_A 86 GRRLVLEWAD 95 (107)
T ss_dssp SCBCEEEECC
T ss_pred CCEEEEEeCC
Confidence 9999999865
No 251
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.24 E-value=2.6e-11 Score=99.24 Aligned_cols=75 Identities=9% Similarity=0.143 Sum_probs=68.7
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEe
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEV 351 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~ 351 (410)
....+.|||.|||.++++++|+++|++|| .|..|.+. .++|||+|.+.++|++|+..| ++..++|+.|.|..
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G----~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFG----PMKEVKIL--NGFAFVEFEEAESAAKAIEEV--HGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTS----CCCEEEEE--TTEEEEECSSHHHHHHHHHHH--TTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcC----CEEEEEEE--CCEEEEEECCHHHHHHHHHHc--CCCEECCeEEEEEE
Confidence 35668999999999999999999999999 99999988 689999999999999999999 67899999999988
Q ss_pred cCc
Q psy5142 352 VTG 354 (410)
Q Consensus 352 l~g 354 (410)
...
T Consensus 100 a~~ 102 (108)
T 2jvo_A 100 SKL 102 (108)
T ss_dssp CSC
T ss_pred ecC
Confidence 653
No 252
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=1.7e-11 Score=98.34 Aligned_cols=64 Identities=17% Similarity=0.270 Sum_probs=54.2
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+++|+++|+++|++| ..|.|..|.+ .+|||||+|.+.++|++|+..++| ..+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--g~g~v~~~~~------------~~g~afV~f~~~~~A~~A~~~l~g--~~~ 76 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNI--KPGAVERVKK------------IRDYAFVHFSNREDAVEAMKALNG--KVL 76 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTT--STTCEEEEEE------------CSSEEEEEESSHHHHHHHHHHHSS--EEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhc--CCcceEEEEE------------eCCeEEEEeCCHHHHHHHHHHhCC--CEe
Confidence 457899999999999999999999999 1135777654 478999999999999999998886 455
No 253
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=2.8e-11 Score=96.37 Aligned_cols=78 Identities=18% Similarity=0.239 Sum_probs=68.4
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEE-eeCCCce--EEEEeCChhHHHHHHHHhcCCCeEEcCeEEE
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIE-FNVGEPT--AFVRYKKENNAEAVLKALGSKEIVIKDVKVS 348 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~-~~~g~~~--afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~ 348 (410)
....+.|||.|||+.+++++|+++|++|| .|..|+ +..+... |||+|.+.++|++|+..| ++..++|+.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G----~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l--~g~~~~g~~l~ 85 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYG----VVESCEQVNTDSETAVVNVTYSSKDQARQALDKL--NGFQLENFTLK 85 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHS----CEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHH--TTCBCSSCBCE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcC----CeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHh--CCCEECCcEEE
Confidence 34568999999999999999999999999 999994 6665443 999999999999999999 67899999999
Q ss_pred EEecCch
Q psy5142 349 IEVVTGE 355 (410)
Q Consensus 349 v~~l~g~ 355 (410)
|.....+
T Consensus 86 V~~a~~~ 92 (96)
T 2e44_A 86 VAYIPDE 92 (96)
T ss_dssp EEECCCC
T ss_pred EEEcCcc
Confidence 9987644
No 254
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=1.5e-11 Score=97.94 Aligned_cols=65 Identities=12% Similarity=0.250 Sum_probs=57.2
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEE-EcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNII-MRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~-l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
..++|||+|||+++|+++|+++|++| |.|..|+ |+++..+ |.|||+|.+.++|++|+..++| ..+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~~~~i~~~~~~--------~~afV~f~~~~~a~~Ai~~l~g--~~~ 79 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQY----GVVESCEQVNTDSET--------AVVNVTYSSKDQARQALDKLNG--FQL 79 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHH----SCEEEEEEECCSSSS--------EEEEEEESSHHHHHHHHHHHTT--CBC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhc----CCeEEEEEeecCCCC--------CEEEEEECCHHHHHHHHHHhCC--CEE
Confidence 46899999999999999999999999 9999994 8776554 2399999999999999999886 455
No 255
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=2.6e-11 Score=99.68 Aligned_cols=76 Identities=11% Similarity=0.163 Sum_probs=68.4
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC-----CceEEEEeCChhHHHHHHHHhcCCCeEEcCeE
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG-----EPTAFVRYKKENNAEAVLKALGSKEIVIKDVK 346 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g-----~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~ 346 (410)
..+.+.|||.|||+.+++++|+++|++|| .|..|.+..+ .++|||+|.+.++|++|+..| ++..++|+.
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G----~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~ 85 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAG----VVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMF--NGQLLFDRP 85 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTS----CEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHH--TTCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC----CeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHh--CCCEeCCCE
Confidence 35578999999999999999999999999 9999988865 347999999999999999999 678999999
Q ss_pred EEEEecC
Q psy5142 347 VSIEVVT 353 (410)
Q Consensus 347 v~v~~l~ 353 (410)
|.|.+..
T Consensus 86 l~v~~a~ 92 (114)
T 2do0_A 86 MHVKMDE 92 (114)
T ss_dssp CEEEECS
T ss_pred EEEEEcc
Confidence 9999864
No 256
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.23 E-value=4e-11 Score=97.45 Aligned_cols=76 Identities=11% Similarity=0.179 Sum_probs=67.5
Q ss_pred CCCeEEEEeCCCCCC------CHHHHHHHHHhcCCCCCCeeEEEeeC----CCceEEEEeCChhHHHHHHHHhcCCCeEE
Q psy5142 273 PTGALLKISDIKEPV------SREDIREVLEKVQTDDQEIVFIEFNV----GEPTAFVRYKKENNAEAVLKALGSKEIVI 342 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~------t~edLk~~F~~~G~~~~~V~~V~~~~----g~~~afV~F~~~e~A~~Al~~l~~~~~~i 342 (410)
...+.|||.|||+.+ ++++|+++|++|| .|..|.+.+ ..++|||+|.+.++|++|+..| ++..+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G----~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l--~g~~~ 86 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFG----KITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNA--DGYKL 86 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGS----CEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHC--SSEEC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCC----CEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHh--CCccc
Confidence 346799999999999 7899999999999 999998873 2467999999999999999999 78999
Q ss_pred cCe-EEEEEecCc
Q psy5142 343 KDV-KVSIEVVTG 354 (410)
Q Consensus 343 ~g~-~v~v~~l~g 354 (410)
+|+ .|.|..+..
T Consensus 87 ~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 87 DKQHTFRVNLFTD 99 (105)
T ss_dssp STTCEEEEECSCC
T ss_pred CCCceEEEEEcch
Confidence 998 999998763
No 257
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=2.9e-11 Score=99.92 Aligned_cols=75 Identities=19% Similarity=0.308 Sum_probs=65.8
Q ss_pred CCCeEEEE--eCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEE-----cCe
Q psy5142 273 PTGALLKI--SDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVI-----KDV 345 (410)
Q Consensus 273 ~~g~~l~v--~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i-----~g~ 345 (410)
.+...||| .||++++++++|+++|++|| .|..|.+.+++++|||+|.+.++|++|++.| ++..+ .|.
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG----~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~l--nG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCG----LVDALLMPPNKPYSFARYRTTEESKRAYVTL--NGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHS----CEEEEECCTTCSCEEEEESSHHHHHHHHHHT--TTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcC----CeEEEEEeCCCCEEEEEECCHHHHHHHHHHh--CCCEEccccCCCc
Confidence 44568999 56999999999999999999 9999999999999999999999999999999 55666 577
Q ss_pred EEEEEecC
Q psy5142 346 KVSIEVVT 353 (410)
Q Consensus 346 ~v~v~~l~ 353 (410)
.|.|..+.
T Consensus 97 ~l~v~~a~ 104 (114)
T 2cq2_A 97 TLYLNFVE 104 (114)
T ss_dssp ECEEEEES
T ss_pred EEEEEecc
Confidence 78777654
No 258
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.23 E-value=2.7e-11 Score=100.37 Aligned_cols=76 Identities=14% Similarity=0.303 Sum_probs=68.3
Q ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcC
Q psy5142 271 ELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKD 344 (410)
Q Consensus 271 ~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g 344 (410)
..+..+.|||.|||+++++++|+++|++|| .|..|.+..+ .++|||+|.+.++|++|++.| ++..++|
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G----~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g 109 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFG----NVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM--NGFQVGT 109 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSC----EEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHC--CCCEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC----CEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHc--CCCEECC
Confidence 346679999999999999999999999999 9999998765 357999999999999999999 6789999
Q ss_pred eEEEEEec
Q psy5142 345 VKVSIEVV 352 (410)
Q Consensus 345 ~~v~v~~l 352 (410)
+.|+|+..
T Consensus 110 ~~l~V~~a 117 (118)
T 2khc_A 110 KRLKVQLK 117 (118)
T ss_dssp EECCEEEC
T ss_pred EEEEEEec
Confidence 99998764
No 259
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=1e-10 Score=93.42 Aligned_cols=74 Identities=16% Similarity=0.293 Sum_probs=68.0
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEe
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEV 351 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~ 351 (410)
..+.+.|||.|| ++++++|+++|++|| .|..|.+....++|||+|.+.++|++|+..| ++..++|+.|.|..
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G----~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l--~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFG----NIIDLSMDPPRNCAFVTYEKMESADQAVAEL--NGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTS----CEEEEEEETTTTEEEEEESSHHHHHHHHHHT--TTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCC----CEEEEEecCCCCEEEEEECCHHHHHHHHHHh--CCCeECCeEEEEEE
Confidence 456789999996 899999999999999 9999999888899999999999999999999 67899999999987
Q ss_pred cC
Q psy5142 352 VT 353 (410)
Q Consensus 352 l~ 353 (410)
..
T Consensus 84 a~ 85 (97)
T 1x5p_A 84 AR 85 (97)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 260
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=3e-11 Score=97.34 Aligned_cols=76 Identities=11% Similarity=0.200 Sum_probs=68.0
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCe
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDV 345 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~ 345 (410)
.++.+.|||.|||+++++++|+++|++|| .|..|.+..+ .++|||+|.+.++|++|++.| ++..++|+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G----~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~ 82 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYG----QISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM--NGKSVDGR 82 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHS----CCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHH--TTCCTTSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcC----CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHh--CCCEECCe
Confidence 35567999999999999999999999999 9999998764 347999999999999999999 67889999
Q ss_pred EEEEEecC
Q psy5142 346 KVSIEVVT 353 (410)
Q Consensus 346 ~v~v~~l~ 353 (410)
.|.|....
T Consensus 83 ~l~v~~a~ 90 (102)
T 1x5s_A 83 QIRVDQAG 90 (102)
T ss_dssp CCEEEEEE
T ss_pred EEEEEECC
Confidence 99998764
No 261
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.23 E-value=1.1e-11 Score=108.03 Aligned_cols=69 Identities=22% Similarity=0.309 Sum_probs=62.2
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||.++|+++|+++|++| |.|.+|.++++..++ .++|+|||+|.+.++|.+|++ +++ ..+
T Consensus 85 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~~~i~~~~~~g----~~~g~afV~f~~~~~a~~A~~-~~~--~~~ 153 (167)
T 2cjk_A 85 DKTGKIFVGGIGPDVRPKEFEEFFSQW----GTIIDAQLMLDKDTG----QSRGFGFVTYDSADAVDRVCQ-NKF--IDF 153 (167)
T ss_dssp HHCEEEEEEEECTTCCHHHHHHHHHTT----SCCSEEECCCSSSSS----TTSEEEEEEESSHHHHHHHHH-CSE--ECS
T ss_pred cCCCeEEECCCCCCCCHHHHHHHHHhC----ccEEEEEEEEcCCCC----ccceEEEEEECCHHHHHHHHh-CCC--EEe
Confidence 457899999999999999999999999 999999999987665 899999999999999999998 564 455
No 262
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=4e-11 Score=96.08 Aligned_cols=75 Identities=12% Similarity=0.198 Sum_probs=67.1
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCe
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDV 345 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~ 345 (410)
..+.+.|||.|||..+++++|+++|++|| .|..|.+..+ .++|||+|.+.++|++|++ + ++..++|+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~--~~~~~~g~ 79 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFG----VVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-M--HFHDIMGK 79 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSS----CEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-H--CCCBSSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC----CeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-h--CCCEECCe
Confidence 35568999999999999999999999999 9999998764 3579999999999999998 8 67899999
Q ss_pred EEEEEecC
Q psy5142 346 KVSIEVVT 353 (410)
Q Consensus 346 ~v~v~~l~ 353 (410)
.|.|....
T Consensus 80 ~l~V~~a~ 87 (99)
T 2dgs_A 80 KVEVKRAE 87 (99)
T ss_dssp BCEEEECC
T ss_pred EEEEEECC
Confidence 99999865
No 263
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.22 E-value=3.8e-11 Score=94.04 Aligned_cols=72 Identities=8% Similarity=0.216 Sum_probs=64.7
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEE
Q psy5142 275 GALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVS 348 (410)
Q Consensus 275 g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~ 348 (410)
.+.|+|.|||+.+++++|+++|++|| .|..|.+..+ .++|||+|.+.++|++|+ .+ ++..++|+.|.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~--~g~~~~g~~l~ 78 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCG----SVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-AL--DESLFRGRQIK 78 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGC----CEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GG--TTCEETTEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCC----CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hc--CCCEECCcEEE
Confidence 35899999999999999999999999 9999988765 347999999999999999 88 67899999999
Q ss_pred EEecC
Q psy5142 349 IEVVT 353 (410)
Q Consensus 349 v~~l~ 353 (410)
|....
T Consensus 79 V~~a~ 83 (89)
T 3ucg_A 79 VIPKR 83 (89)
T ss_dssp EEETT
T ss_pred EEEcc
Confidence 98754
No 264
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.22 E-value=7.8e-11 Score=98.52 Aligned_cols=78 Identities=23% Similarity=0.315 Sum_probs=70.3
Q ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC-----CceEEEEeCChhHHHHHHHHhcCCCeEEcCe
Q psy5142 271 ELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG-----EPTAFVRYKKENNAEAVLKALGSKEIVIKDV 345 (410)
Q Consensus 271 ~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g-----~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~ 345 (410)
...+++.|+|.|||..+++++|+++|++|| .|..|.+..+ .++|||+|.+.++|++|+..| ++..++|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G----~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~ 104 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFG----TLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQY--KGVPLDGR 104 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTS----CCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHH--TTEESSSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC----CeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHc--CCCEECCc
Confidence 456779999999999999999999999999 9999998764 458999999999999999999 67899999
Q ss_pred EEEEEecCc
Q psy5142 346 KVSIEVVTG 354 (410)
Q Consensus 346 ~v~v~~l~g 354 (410)
.|.|.....
T Consensus 105 ~l~V~~a~~ 113 (124)
T 2kt5_A 105 PMDIQLVAS 113 (124)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEeCC
Confidence 999998753
No 265
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.22 E-value=3.1e-11 Score=99.15 Aligned_cols=76 Identities=14% Similarity=0.286 Sum_probs=68.7
Q ss_pred CCCCeEEEEeCCCCCCCHHHHH---HHHHhcCCCCCCeeEEEeeCCC---------ceEEEEeCChhHHHHHHHHhcCCC
Q psy5142 272 LPTGALLKISDIKEPVSREDIR---EVLEKVQTDDQEIVFIEFNVGE---------PTAFVRYKKENNAEAVLKALGSKE 339 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk---~~F~~~G~~~~~V~~V~~~~g~---------~~afV~F~~~e~A~~Al~~l~~~~ 339 (410)
....+.|||.|||+++++++|+ ++|++|| .|..|.+.++. ++|||+|.+.++|++|++.| ++
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G----~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~l--ng 85 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFG----KIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCV--NN 85 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTS----CEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHH--TT
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccC----CEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHh--CC
Confidence 4456789999999999999999 9999999 99999998654 38999999999999999999 78
Q ss_pred eEEcCeEEEEEecC
Q psy5142 340 IVIKDVKVSIEVVT 353 (410)
Q Consensus 340 ~~i~g~~v~v~~l~ 353 (410)
..++|+.|.|....
T Consensus 86 ~~~~gr~l~V~~a~ 99 (111)
T 2cpi_A 86 VVVDGRTLKASLGT 99 (111)
T ss_dssp EEETTEEEEEESCC
T ss_pred CEECCEEEEEEecc
Confidence 99999999999865
No 266
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=4.1e-12 Score=99.77 Aligned_cols=56 Identities=21% Similarity=0.442 Sum_probs=51.0
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHH
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFL 186 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al 186 (410)
..++|||+|||+++|+++|+++|++| |.|.+|+|++ .++|||||+|.+.++|++|+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~---------~~~g~afV~f~~~~~a~~~~ 59 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQY----GDVMDVFIPK---------PFRAFAFVTFADDQIAQSLC 59 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTT----SCCCEEECCS---------SCCSCCEEECSCHHHHHHTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHc----CCeeEEEEec---------CCCCEEEEEECCHHHHHHHh
Confidence 46899999999999999999999999 9999999975 36899999999999998653
No 267
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.22 E-value=1.8e-11 Score=97.05 Aligned_cols=75 Identities=17% Similarity=0.213 Sum_probs=63.3
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEE
Q psy5142 276 ALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSI 349 (410)
Q Consensus 276 ~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v 349 (410)
.+|+|.|||+++|+++|+++|++|| ..|..|.++++ .++|||+|.+.++|++|++.++ +++.++|+.|.|
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G---~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~-~~~~~~gr~i~V 77 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHG---VQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQ-HSLNILGQKVSM 77 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHT---CCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTT-TEEEETTEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhC---CEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcC-CCeEECCEEEEE
Confidence 3799999999999999999999999 23677776643 3579999999999999999873 568899999999
Q ss_pred EecCc
Q psy5142 350 EVVTG 354 (410)
Q Consensus 350 ~~l~g 354 (410)
.....
T Consensus 78 ~~a~~ 82 (91)
T 2lxi_A 78 HYSDP 82 (91)
T ss_dssp ECCCS
T ss_pred EEcCC
Confidence 87653
No 268
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=2.2e-11 Score=97.36 Aligned_cols=62 Identities=23% Similarity=0.270 Sum_probs=55.6
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|| ++|+++|+++|++| |.|.+|.|. .++|||||+|.+.++|++|+..++| ..+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~----G~i~~v~i~----------~~~g~afV~f~~~~~a~~Ai~~l~g--~~~ 74 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPF----GNIIDLSMD----------PPRNCAFVTYEKMESADQAVAELNG--TQV 74 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTT----SCEEEEEEE----------TTTTEEEEEESSHHHHHHHHHHTTT--EEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhC----CCEEEEEec----------CCCCEEEEEECCHHHHHHHHHHhCC--CeE
Confidence 34689999996 89999999999999 999999984 5789999999999999999999886 455
No 269
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.22 E-value=6.7e-11 Score=92.37 Aligned_cols=72 Identities=15% Similarity=0.240 Sum_probs=63.3
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCeEEcCeE
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE------PTAFVRYKKENNAEAVLKALGSKEIVIKDVK 346 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~ 346 (410)
.+.+.|||.|||+.+++++|+++|++|| .|..|.+..+. ++|||+|.+.++|++|++.+ +..++|+.
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G----~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~---~~~~~g~~ 81 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFG----EVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK---EHRLDGRV 81 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTS----CEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSS---CEEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCC----CEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhC---CCEECCEE
Confidence 4567999999999999999999999999 99999987653 36999999999999999653 56899999
Q ss_pred EEEEe
Q psy5142 347 VSIEV 351 (410)
Q Consensus 347 v~v~~ 351 (410)
|.|+.
T Consensus 82 i~v~~ 86 (87)
T 3s7r_A 82 IDPKK 86 (87)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99875
No 270
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=1.5e-11 Score=101.62 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=55.5
Q ss_pred cceeeEe--ecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCC
Q psy5142 118 IAQSLYV--KYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDK 192 (410)
Q Consensus 118 ~~rtv~V--~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~ 192 (410)
..++||| +|||+++|+++|+++|++| |.|.+|.|+. .+|||||+|.+.++|++|++.++|+
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~f----G~v~~v~i~~----------~rgfaFV~f~~~~~A~~Ai~~lnG~ 86 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKC----GLVDALLMPP----------NKPYSFARYRTTEESKRAYVTLNGK 86 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHH----SCEEEEECCT----------TCSCEEEEESSHHHHHHHHHHTTTC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhc----CCeEEEEEeC----------CCCEEEEEECCHHHHHHHHHHhCCC
Confidence 3578999 6699999999999999999 9999999863 3799999999999999999999973
No 271
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=8e-12 Score=99.06 Aligned_cols=59 Identities=17% Similarity=0.308 Sum_probs=53.0
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCc-eEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVK-ITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~-I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
..++|||+|||+++|+++|+++|++| |. |..+.+ ..+|||||+|.+.++|++|++.++|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~----G~vv~~~~~-----------~~~g~afV~f~~~~~A~~A~~~l~g 66 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDR----KLPLAGQVL-----------LKSGYAFVDYPDQNWAIRAIETLSG 66 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHT----TCCCSSCEE-----------EETTEEEECCSCHHHHHHHHHHHTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHc----CCceEEEEE-----------cCCCEEEEEECCHHHHHHHHHHccC
Confidence 46899999999999999999999999 99 666655 2489999999999999999999885
No 272
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=7.2e-11 Score=95.55 Aligned_cols=75 Identities=12% Similarity=0.239 Sum_probs=65.5
Q ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC-------CceEEEEeCChhHHHHHHHHhcCCCeEEc
Q psy5142 271 ELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG-------EPTAFVRYKKENNAEAVLKALGSKEIVIK 343 (410)
Q Consensus 271 ~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g-------~~~afV~F~~~e~A~~Al~~l~~~~~~i~ 343 (410)
...+.+.|||.|||+++++++|+++|++|| |..|.+..+ .++|||+|.+.++|++|+ .| ++..++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l--~g~~~~ 82 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-----ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SL--NEESLG 82 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-----EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GG--GTCEET
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-----ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hc--CCCEeC
Confidence 345668999999999999999999999998 777887654 347999999999999999 88 678999
Q ss_pred CeEEEEEecC
Q psy5142 344 DVKVSIEVVT 353 (410)
Q Consensus 344 g~~v~v~~l~ 353 (410)
|+.|.|....
T Consensus 83 g~~l~V~~a~ 92 (104)
T 1wi8_A 83 NKRIRVDVAD 92 (104)
T ss_dssp TEECEEEECC
T ss_pred CcEEEEEEcc
Confidence 9999999865
No 273
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.21 E-value=1.4e-11 Score=125.06 Aligned_cols=70 Identities=17% Similarity=0.229 Sum_probs=63.8
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||+.+|+++|..+|++| |.|..|.|+.+..++ .++|||||+|.+.++|.+||..++| ..|
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~----G~I~~v~i~~d~~tg----~~kG~aFV~F~~~e~A~~Ai~~lng--~~i 169 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVY----GPIKRIHMVYSKRSG----KPRGYAFIEYEHERDMHSAYKHADG--KKI 169 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHc----CCeeEEEeeccCCCC----CccceEEEeeccHHHHHHHHHHcCC--CEE
Confidence 345899999999999999999999999 999999999887665 7899999999999999999999986 455
No 274
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=4.5e-11 Score=98.21 Aligned_cols=76 Identities=12% Similarity=0.260 Sum_probs=67.3
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCee--------EEEeeCC------CceEEEEeCChhHHHHHHHHhcC
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIV--------FIEFNVG------EPTAFVRYKKENNAEAVLKALGS 337 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~--------~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~ 337 (410)
....+.|||.|||..+++++|+++|++|| .|. .|.+..+ .++|||+|.+.++|++|+..|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G----~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l-- 85 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCG----VVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWF-- 85 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTS----CBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHH--
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcC----CEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHc--
Confidence 45678999999999999999999999999 887 5777654 347999999999999999999
Q ss_pred CCeEEcCeEEEEEecC
Q psy5142 338 KEIVIKDVKVSIEVVT 353 (410)
Q Consensus 338 ~~~~i~g~~v~v~~l~ 353 (410)
++..++|+.|.|....
T Consensus 86 ~g~~~~g~~l~V~~a~ 101 (113)
T 2cpe_A 86 DGKDFQGSKLKVSLAR 101 (113)
T ss_dssp TTCEETTEECEEECSS
T ss_pred CCCccCCCEEEEEECC
Confidence 6789999999998764
No 275
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.21 E-value=3.8e-12 Score=109.33 Aligned_cols=66 Identities=23% Similarity=0.349 Sum_probs=56.6
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEE--------EEcccCcccccccccccEEEEEecCHHHHHHHHHhc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNI--------IMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNEN 189 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v--------~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~ 189 (410)
..++|||+|||+++|+++|+++|++| |.|..+ ++. .++ .++|||||+|.+.++|.+|+..+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~----G~i~~~~~~~~~di~~~---~~g----~~~g~afV~f~~~~~A~~Ai~~l 112 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRY----VDFSSETQRIMFDIRLM---KEG----RMKGQAFIGLPNEKAAAKALKEA 112 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGG----CCTTCHHHHHHCEEEEE---EET----TTEEEEEEECSSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHh----CCcccccccceeeEEec---cCC----CcccEEEEEeCCHHHHHHHHHHh
Confidence 46899999999999999999999999 998764 332 222 78999999999999999999999
Q ss_pred CCCCccc
Q psy5142 190 KDKNLKF 196 (410)
Q Consensus 190 ~g~~~~~ 196 (410)
+| ..+
T Consensus 113 ng--~~~ 117 (143)
T 3egn_A 113 NG--YVL 117 (143)
T ss_dssp TT--BEE
T ss_pred CC--CEe
Confidence 86 455
No 276
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.21 E-value=3.1e-11 Score=98.77 Aligned_cols=77 Identities=14% Similarity=0.236 Sum_probs=68.7
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCe
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDV 345 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~ 345 (410)
.++.+.|+|.|||..+++++|+++|++|| .|..|.+... .++|||+|.+.++|++|++.| ++..++|+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G----~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l--~g~~i~g~ 96 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFG----RIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL--NGFELAGR 96 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTS----CEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHH--TTCCSSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC----CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHc--CCCEECCE
Confidence 45678999999999999999999999999 9999988754 247999999999999999999 67899999
Q ss_pred EEEEEecCc
Q psy5142 346 KVSIEVVTG 354 (410)
Q Consensus 346 ~v~v~~l~g 354 (410)
.|.|+....
T Consensus 97 ~l~V~~a~~ 105 (108)
T 2jrs_A 97 PMKVGHVTE 105 (108)
T ss_dssp CCEEECSCS
T ss_pred EEEEEEccc
Confidence 999998754
No 277
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.21 E-value=1e-11 Score=97.58 Aligned_cols=62 Identities=23% Similarity=0.371 Sum_probs=55.0
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
..++|||+|||+++|+++|+++|++| .|.+|+|. .++|||||+|.+.++|++|++.++| ..+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-----~v~~~~i~----------~~~g~afV~f~~~~~a~~Ai~~l~g--~~~ 65 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-----DLKYCYVD----------RNKRTAFVTLLNGEQAQNAIQMFHQ--YSF 65 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-----CCCCEEEE----------GGGTEEEECCSCHHHHHHHHHHHTT--EEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-----CeEEEEEe----------CCCcEEEEEECCHHHHHHHHHHhCC--CeE
Confidence 46899999999999999999999999 57788773 4689999999999999999999986 455
No 278
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.21 E-value=6.3e-11 Score=96.07 Aligned_cols=76 Identities=17% Similarity=0.212 Sum_probs=67.0
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEE---
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVI--- 342 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i--- 342 (410)
..+.+.|||.|||..+++++|+++|++|| .|..|.+..+ .++|||+|.+.++|++|+..| ++..+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G----~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~~~ 83 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFG----KIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSAL--HEQKTLPG 83 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHS----CCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHH--TTTCCCTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC----CeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHh--cCCcccCC
Confidence 45678999999999999999999999999 9999998764 357999999999999999999 55565
Q ss_pred cCeEEEEEecC
Q psy5142 343 KDVKVSIEVVT 353 (410)
Q Consensus 343 ~g~~v~v~~l~ 353 (410)
.|+.|.|....
T Consensus 84 ~g~~l~v~~a~ 94 (106)
T 2dgp_A 84 MNRPIQVKPAD 94 (106)
T ss_dssp CSSCCEEEECC
T ss_pred CCceEEEEECC
Confidence 78999998765
No 279
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=4.1e-11 Score=95.98 Aligned_cols=75 Identities=16% Similarity=0.201 Sum_probs=66.1
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCee-EEEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCeEEcCe
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQEIV-FIEFNVGE------PTAFVRYKKENNAEAVLKALGSKEIVIKDV 345 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~-~V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~~i~g~ 345 (410)
...+.|||.|||+.+++++|+++|++|| .|. .|.+.++. ++|||+|.+.++|++|+..| ++..++|+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G----~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~ 80 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMG----ETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKI--NGKPLPGA 80 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTT----CCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTT--TTSEESSC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhC----CcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHH--cCCccCCC
Confidence 4567999999999999999999999999 998 88887654 46999999999999999999 67899999
Q ss_pred E----EEEEecC
Q psy5142 346 K----VSIEVVT 353 (410)
Q Consensus 346 ~----v~v~~l~ 353 (410)
. |.|....
T Consensus 81 ~~~~~l~v~~a~ 92 (99)
T 2div_A 81 TPAKRFKLNYAT 92 (99)
T ss_dssp SSCEECCEEETT
T ss_pred CcceeEEEeecC
Confidence 8 7777653
No 280
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=8.2e-11 Score=94.03 Aligned_cols=76 Identities=12% Similarity=0.280 Sum_probs=65.6
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEee--CCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEE
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFN--VGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSI 349 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~--~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v 349 (410)
.+..+.|||.|||+.+++++|+++|++|| .|. +.+. ...++|||.|.+.++|++|+..| ++..++|+.|.|
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G----~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V 88 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELG----SVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCL--QGLRLGTDTLRV 88 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTT----CCC-SEEEEETTTTEEEEECSSHHHHHHHHHHH--TTCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcC----CEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHh--CCCEECCcEEEE
Confidence 44568999999999999999999999999 664 3444 44678999999999999999999 678899999999
Q ss_pred EecCc
Q psy5142 350 EVVTG 354 (410)
Q Consensus 350 ~~l~g 354 (410)
.....
T Consensus 89 ~~a~~ 93 (97)
T 2e5j_A 89 ALARQ 93 (97)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 98754
No 281
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=2.3e-11 Score=98.87 Aligned_cols=72 Identities=17% Similarity=0.223 Sum_probs=64.8
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC-----CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEE
Q psy5142 274 TGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG-----EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVS 348 (410)
Q Consensus 274 ~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g-----~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~ 348 (410)
....|||.|||+++|+++|+++|++|| .|..|.++.+ .++|||.|.++++|++|+. + ++..++|+.|.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G----~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~--~~~~~~gr~l~ 82 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKG----QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-T--PGQKYKETDLL 82 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSS----CEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-S--SCCCCTTTTCE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcC----CEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-c--CCCEECCEEEE
Confidence 456899999999999999999999999 9999999864 4579999999999999999 6 67899999999
Q ss_pred EEec
Q psy5142 349 IEVV 352 (410)
Q Consensus 349 v~~l 352 (410)
|...
T Consensus 83 V~~~ 86 (103)
T 1s79_A 83 ILFK 86 (103)
T ss_dssp EEEH
T ss_pred EEEc
Confidence 9864
No 282
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.20 E-value=1e-11 Score=105.87 Aligned_cols=76 Identities=20% Similarity=0.330 Sum_probs=67.7
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCeEEcCe
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE------PTAFVRYKKENNAEAVLKALGSKEIVIKDV 345 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~~i~g~ 345 (410)
....+.|+|.|||+.+++++|+++|++|| .|..|.+..+. ++|||+|.+.++|++|+..| ++..++|+
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G----~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l--~g~~i~g~ 117 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYG----RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM--DGAVLDGR 117 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGS----CCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTT--TTCCSSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC----CEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHc--CCCEECCE
Confidence 34567899999999999999999999999 99999987643 37999999999999999999 67889999
Q ss_pred EEEEEecC
Q psy5142 346 KVSIEVVT 353 (410)
Q Consensus 346 ~v~v~~l~ 353 (410)
.|.|....
T Consensus 118 ~l~V~~a~ 125 (135)
T 2lea_A 118 ELRVQMAR 125 (135)
T ss_dssp CCEEEECC
T ss_pred EEEEEECC
Confidence 99999765
No 283
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=3e-11 Score=97.55 Aligned_cols=78 Identities=12% Similarity=0.261 Sum_probs=68.8
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEE
Q psy5142 275 GALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVS 348 (410)
Q Consensus 275 g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~ 348 (410)
.+.|||.|||..+++++|+++|++|| .|..|.+..+ .++|||+|.+.++|++|++.| ++..++|+.|.
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G----~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~ 81 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVG----PVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL--NGREFSGRALR 81 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTS----CCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHS--SSBSCSSSCBE
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcC----CeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHh--CCCeeCCcEEE
Confidence 46899999999999999999999999 9999888754 357999999999999999999 67889999999
Q ss_pred EEecCchHHH
Q psy5142 349 IEVVTGEEEQ 358 (410)
Q Consensus 349 v~~l~g~eE~ 358 (410)
|.........
T Consensus 82 v~~a~~~~~~ 91 (104)
T 1p1t_A 82 VDNAASEKNK 91 (104)
T ss_dssp EEETTCTTHH
T ss_pred EEeCCCccch
Confidence 9988755443
No 284
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.20 E-value=1.2e-10 Score=99.14 Aligned_cols=75 Identities=16% Similarity=0.271 Sum_probs=67.7
Q ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcC
Q psy5142 271 ELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKD 344 (410)
Q Consensus 271 ~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g 344 (410)
..++...|||.|||..+++++|+++|++|| .|..|.+..+ .++|||+|.+.++|++|++.| ++..++|
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g 132 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFG----DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM--NESELFG 132 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGS----CEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHS--TEEEETT
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcC----CEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHh--CCCEECC
Confidence 345678999999999999999999999999 9999998764 457999999999999999999 6899999
Q ss_pred eEEEEEe
Q psy5142 345 VKVSIEV 351 (410)
Q Consensus 345 ~~v~v~~ 351 (410)
+.|.|+.
T Consensus 133 ~~l~v~~ 139 (140)
T 2ku7_A 133 RTIRVNL 139 (140)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 9999875
No 285
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.20 E-value=1.6e-11 Score=99.06 Aligned_cols=73 Identities=15% Similarity=0.297 Sum_probs=66.3
Q ss_pred CeEEEEeCCCC------CCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEE
Q psy5142 275 GALLKISDIKE------PVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVI 342 (410)
Q Consensus 275 g~~l~v~nL~~------~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i 342 (410)
+++|||.|||. ++++++|+++|++|| .|..|.++.+ .++|||.|.++++|++|++.| ++..+
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G----~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~l--ng~~~ 79 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAG----KVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSF--HGKRL 79 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTS----CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHH--TTCBS
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcC----CEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHh--CCccc
Confidence 57899999999 999999999999999 9999988754 357999999999999999999 67899
Q ss_pred cC-eEEEEEecC
Q psy5142 343 KD-VKVSIEVVT 353 (410)
Q Consensus 343 ~g-~~v~v~~l~ 353 (410)
+| +.|.|..+.
T Consensus 80 ~g~r~l~V~~a~ 91 (100)
T 3ns6_A 80 DLKHRLFLYTMK 91 (100)
T ss_dssp SSSCBCEEEESH
T ss_pred CCCeEEEEEECc
Confidence 99 999999875
No 286
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.19 E-value=1.3e-11 Score=103.31 Aligned_cols=67 Identities=15% Similarity=0.095 Sum_probs=58.1
Q ss_pred eeeEeecC----CCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecC----HHH----HHHHHH
Q psy5142 120 QSLYVKYI----PVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDN----KEN----AEKFLN 187 (410)
Q Consensus 120 rtv~V~~l----p~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~----~e~----A~~Al~ 187 (410)
..|||+|| |+.+|+++|+++|++| |+|.++.++.|+.++ .++|||||+|.+ +++ |.+|+.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~f----GeV~~~~li~Dp~Tg----~slGfgfVef~d~~g~~d~a~kAA~kAi~ 74 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKY----GEISHFEAFNDPNSA----LPLHVYLIKYASSDGKINDAAKAAFSAVR 74 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTT----SCCSEEEEEECTTTC----CEEEEEEEECC------CCHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCC----ceeeEEEEEECCCCCCcchHHHHHHHHHH
Confidence 58999999 9999999999999999 999999999999997 999999999996 433 788888
Q ss_pred --hcCCCCccc
Q psy5142 188 --ENKDKNLKF 196 (410)
Q Consensus 188 --~~~g~~~~~ 196 (410)
.++| ..+
T Consensus 75 ~~~lng--~~I 83 (136)
T 2j8a_A 75 KHESSG--CFI 83 (136)
T ss_dssp HTTTTC--EEE
T ss_pred HhhhcC--Cee
Confidence 5564 445
No 287
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.19 E-value=4.3e-11 Score=99.56 Aligned_cols=76 Identities=17% Similarity=0.199 Sum_probs=65.9
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCC---eeEEEeeCC-----CceEEEEeCChhHHHHHHHHhcCCCeEEc
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQE---IVFIEFNVG-----EPTAFVRYKKENNAEAVLKALGSKEIVIK 343 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~---V~~V~~~~g-----~~~afV~F~~~e~A~~Al~~l~~~~~~i~ 343 (410)
....++|||.|||+++++++|+++|++|| . |..|.+..+ .++|||+|.+.++|++||+ + ++..|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G----~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~--~g~~~~ 86 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCT----IHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-K--DRESMG 86 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSC----BTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-G--TTEEET
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcC----CccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-c--CCCeEC
Confidence 34578999999999999999999999999 6 677777643 2469999999999999999 8 679999
Q ss_pred CeEEEEEecCc
Q psy5142 344 DVKVSIEVVTG 354 (410)
Q Consensus 344 g~~v~v~~l~g 354 (410)
|+.|.|.....
T Consensus 87 gr~i~V~~a~~ 97 (118)
T 2db1_A 87 HRYIEVFKSHR 97 (118)
T ss_dssp TEEEEEEEECH
T ss_pred CeEEEEEECCH
Confidence 99999998863
No 288
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.19 E-value=7.7e-11 Score=97.09 Aligned_cols=78 Identities=15% Similarity=0.233 Sum_probs=69.8
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC---CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEE
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG---EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSI 349 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g---~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v 349 (410)
+++++|+|.|||+.+++++|+++|++|| .|..|.+..+ .++|||.|.+.++|.+|+..| ++..++|+.|.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G----~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v 79 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYG----PIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHL--SGFNVSNRYLVV 79 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTS----CEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHH--TTCBSSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC----CeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHc--CCCEECCeEEEE
Confidence 4567999999999999999999999999 9999998753 357999999999999999999 678899999999
Q ss_pred EecCchH
Q psy5142 350 EVVTGEE 356 (410)
Q Consensus 350 ~~l~g~e 356 (410)
.......
T Consensus 80 ~~a~~~~ 86 (115)
T 3lqv_A 80 LYYNANR 86 (115)
T ss_dssp EECCHHH
T ss_pred EEecCCh
Confidence 9987543
No 289
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.19 E-value=6.9e-11 Score=99.77 Aligned_cols=80 Identities=14% Similarity=0.282 Sum_probs=69.2
Q ss_pred CCCCCeEEEEeCCCCCCCHHHHH----HHHHhcCCCCCCeeEEEeeC---CCceEEEEeCChhHHHHHHHHhcCCCeEEc
Q psy5142 271 ELPTGALLKISDIKEPVSREDIR----EVLEKVQTDDQEIVFIEFNV---GEPTAFVRYKKENNAEAVLKALGSKEIVIK 343 (410)
Q Consensus 271 ~~~~g~~l~v~nL~~~~t~edLk----~~F~~~G~~~~~V~~V~~~~---g~~~afV~F~~~e~A~~Al~~l~~~~~~i~ 343 (410)
..+++++|||.|||+.+++++|+ ++|++|| .|..|.+.. ..++|||.|.+.++|..|+..| ++..+.
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G----~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~l--ng~~l~ 98 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQG----DILDIVVDLSDDNSGKAYIVFATQESAQAFVEAF--QGYPFQ 98 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHS----CEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHS--TTCCCT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCC----CeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHH--CCCEeC
Confidence 34567899999999999999876 6999999 998888754 3468999999999999999999 678899
Q ss_pred CeEEEEEecCchH
Q psy5142 344 DVKVSIEVVTGEE 356 (410)
Q Consensus 344 g~~v~v~~l~g~e 356 (410)
|+.|.|.......
T Consensus 99 gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 99 GNPLVITFSETPQ 111 (127)
T ss_dssp TSCCEEEECCCCC
T ss_pred CCEEEEEEccCcc
Confidence 9999999887543
No 290
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.19 E-value=1.8e-11 Score=97.83 Aligned_cols=77 Identities=22% Similarity=0.258 Sum_probs=64.4
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeC----C--CceEEEEeCChhHHHHHHHHhcCCCeEEcCe
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNV----G--EPTAFVRYKKENNAEAVLKALGSKEIVIKDV 345 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~----g--~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~ 345 (410)
.+..++|+|.|||+.+++++|+++|++|| .|..+.+.. + .++|||+|.+.++|++|++.| ++..++|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G----~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l--~g~~~~g~ 85 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQ----VIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL--NDRPIGSR 85 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSC----CCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHT--TTCEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC----CccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHh--CCCeeCCe
Confidence 45568999999999999999999999999 664333322 2 346999999999999999999 67899999
Q ss_pred EEEEEecCc
Q psy5142 346 KVSIEVVTG 354 (410)
Q Consensus 346 ~v~v~~l~g 354 (410)
.|.|.+..+
T Consensus 86 ~l~V~~a~~ 94 (98)
T 2cqp_A 86 KVKLVLGSG 94 (98)
T ss_dssp ECEEEESSC
T ss_pred EEEEEEcCC
Confidence 999998653
No 291
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=9.5e-11 Score=96.46 Aligned_cols=73 Identities=8% Similarity=0.165 Sum_probs=65.6
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEE
Q psy5142 274 TGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKV 347 (410)
Q Consensus 274 ~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v 347 (410)
..+.|||.|||..+++++|+++|++|| .|..|.+..+ .++|||+|.+.++|++|+ .| ++..++|+.|
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G----~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l--~g~~~~g~~l 96 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVG----KVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GL--TGQRLLGVPI 96 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTS----CEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HH--TTEEETTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCC----CEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-Hc--CCCEeCCeEE
Confidence 347999999999999999999999999 9999998753 347999999999999999 88 6899999999
Q ss_pred EEEecC
Q psy5142 348 SIEVVT 353 (410)
Q Consensus 348 ~v~~l~ 353 (410)
.|....
T Consensus 97 ~V~~a~ 102 (114)
T 2cq4_A 97 IVQASQ 102 (114)
T ss_dssp EEEEHH
T ss_pred EEEecC
Confidence 999753
No 292
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.18 E-value=1.7e-11 Score=94.70 Aligned_cols=68 Identities=10% Similarity=0.185 Sum_probs=60.2
Q ss_pred eEEEEeCCCCCC------CHHHHHHHHHhcCCCCCCeeEEEeeCC----CceEEEEeCChhHHHHHHHHhcCCCeEEcCe
Q psy5142 276 ALLKISDIKEPV------SREDIREVLEKVQTDDQEIVFIEFNVG----EPTAFVRYKKENNAEAVLKALGSKEIVIKDV 345 (410)
Q Consensus 276 ~~l~v~nL~~~~------t~edLk~~F~~~G~~~~~V~~V~~~~g----~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~ 345 (410)
++|+|.|||..+ ++++|+++|++|| .|..|.+.+. .++|||+|.++++|++|+..| ++..++|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G----~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~l--ng~~~~g~ 75 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFG----KITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNA--DGYKLDKQ 75 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTC----CEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTS--SSCCCSSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcC----CeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHh--cCcccCCc
Confidence 589999999999 6799999999999 9999988742 467999999999999999999 67888988
Q ss_pred -EEEE
Q psy5142 346 -KVSI 349 (410)
Q Consensus 346 -~v~v 349 (410)
.|+|
T Consensus 76 ~~l~V 80 (81)
T 2krb_A 76 HTFRV 80 (81)
T ss_dssp SCCCC
T ss_pred eeEEe
Confidence 7755
No 293
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=3.3e-11 Score=97.42 Aligned_cols=76 Identities=16% Similarity=0.137 Sum_probs=67.1
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHh-cCCCCCCeeEEEeeCC-----CceEEEEeCChhHHHHHHHHhcCCCeE-EcC
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEK-VQTDDQEIVFIEFNVG-----EPTAFVRYKKENNAEAVLKALGSKEIV-IKD 344 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~-~G~~~~~V~~V~~~~g-----~~~afV~F~~~e~A~~Al~~l~~~~~~-i~g 344 (410)
..+.+.|||.|||+++++++|+++|++ || .|..|.+..+ .++|||+|.+.++|++|+..| ++.. ++|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G----~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~~g 79 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYP----SCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTEC--QGAVGLGS 79 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCT----TEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHT--TTCCSSSS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCC----CeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHc--cCCcccCC
Confidence 355678999999999999999999999 99 9999998765 346999999999999999999 6677 999
Q ss_pred eEEEEEecC
Q psy5142 345 VKVSIEVVT 353 (410)
Q Consensus 345 ~~v~v~~l~ 353 (410)
+.|.|....
T Consensus 80 ~~l~v~~a~ 88 (104)
T 2dhg_A 80 KPVRLSVAI 88 (104)
T ss_dssp SCCCCCBCC
T ss_pred EeEEEEEcc
Confidence 999888754
No 294
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.18 E-value=1.2e-10 Score=91.81 Aligned_cols=77 Identities=18% Similarity=0.311 Sum_probs=62.6
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC-CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEE
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG-EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIE 350 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g-~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~ 350 (410)
.++.++|||.|||+++++++|+++|++|| .|..|.++.. +++|||+|.++++|++ +++..+.++|+.|.|.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G----~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYG----EVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTS----CEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccC----CEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 45678999999999999999999999999 9999999864 6789999999998873 4445677889999999
Q ss_pred ecCchH
Q psy5142 351 VVTGEE 356 (410)
Q Consensus 351 ~l~g~e 356 (410)
......
T Consensus 80 ~a~~k~ 85 (89)
T 3d2w_A 80 NAEPKH 85 (89)
T ss_dssp ECC---
T ss_pred EcCCCC
Confidence 876543
No 295
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.17 E-value=2.8e-11 Score=108.51 Aligned_cols=70 Identities=11% Similarity=0.151 Sum_probs=63.9
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||.++|+++|+++|++| |.|..|+++++..++ .++|+|||+|.+.++|.+|++.++| ..+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~----G~v~~~~~~~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g--~~~ 181 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSF----GPLKAFNLVKDSATG----LSKGYAFCEYVDINVTDQAIAGLNG--MQL 181 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTB----SCEEEEEEEECTTTC----SEEEEEEEEESSSSHHHHHHHHHTT--CEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHc----CCccEEEEeecCCCC----CcceEEEEEECCHHHHHHHHHHcCC--CEE
Confidence 456899999999999999999999999 999999999987554 7899999999999999999999886 455
No 296
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=3.6e-11 Score=95.24 Aligned_cols=74 Identities=16% Similarity=0.248 Sum_probs=63.9
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCC-eeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCC-eEEcCeEEEEE
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQE-IVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKE-IVIKDVKVSIE 350 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~-V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~-~~i~g~~v~v~ 350 (410)
...+.|||.|||+++++++|+++|++|| . |..+.+ ...++|||+|.+.++|++|+..| ++ ..++|+.|.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G----~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l--~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRK----LPLAGQVL-LKSGYAFVDYPDQNWAIRAIETL--SGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTT----CCCSSCEE-EETTEEEECCSCHHHHHHHHHHH--TTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcC----CceEEEEE-cCCCEEEEEECCHHHHHHHHHHc--cCCeeECCEEEEEE
Confidence 3457899999999999999999999999 6 444444 34679999999999999999999 66 89999999998
Q ss_pred ecC
Q psy5142 351 VVT 353 (410)
Q Consensus 351 ~l~ 353 (410)
...
T Consensus 79 ~a~ 81 (93)
T 2cqh_A 79 YSV 81 (93)
T ss_dssp ECC
T ss_pred Ecc
Confidence 764
No 297
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.17 E-value=2.5e-11 Score=92.45 Aligned_cols=70 Identities=14% Similarity=0.185 Sum_probs=62.6
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEE
Q psy5142 276 ALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE------PTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSI 349 (410)
Q Consensus 276 ~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v 349 (410)
+.|+|.|||+++++++|+++|++|| .|..|.+.++. +.|||+|.++++|++|+..+ + ..++|+.|.|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G----~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~--~-~~~~g~~l~v 73 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFG----EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS--R-HELDSKTIDP 73 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTS----CCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTT--T-CCCSSCCCEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC----CEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhC--C-CccCCEEEEE
Confidence 3689999999999999999999999 99988887653 47999999999999999998 5 8899999988
Q ss_pred Eec
Q psy5142 350 EVV 352 (410)
Q Consensus 350 ~~l 352 (410)
+.+
T Consensus 74 ~~a 76 (77)
T 1uaw_A 74 KVA 76 (77)
T ss_dssp EEC
T ss_pred Eec
Confidence 764
No 298
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=7.5e-11 Score=94.93 Aligned_cols=77 Identities=18% Similarity=0.294 Sum_probs=64.5
Q ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEee-CC--CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEE
Q psy5142 271 ELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFN-VG--EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKV 347 (410)
Q Consensus 271 ~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~-~g--~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v 347 (410)
...+.+.|||.|||+.+++++|+++|+.|+ .|..+... .+ .++|||+|.+.++|++|+..| ++..|+|+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~----~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l 84 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV----RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM--EDGEIDGNKV 84 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS----EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHH--TTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe----EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHh--CCCeECCeEE
Confidence 345668899999999999999999999887 66655432 22 247999999999999999999 6789999999
Q ss_pred EEEecC
Q psy5142 348 SIEVVT 353 (410)
Q Consensus 348 ~v~~l~ 353 (410)
.|....
T Consensus 85 ~V~~a~ 90 (102)
T 2fc8_A 85 TLDWAK 90 (102)
T ss_dssp EEEECC
T ss_pred EEEEec
Confidence 999864
No 299
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.17 E-value=3.9e-11 Score=102.52 Aligned_cols=78 Identities=18% Similarity=0.186 Sum_probs=66.7
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCC---eeEEEeeCC-----CceEEEEeCChhHHHHHHHHhcCCCeEEc
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQE---IVFIEFNVG-----EPTAFVRYKKENNAEAVLKALGSKEIVIK 343 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~---V~~V~~~~g-----~~~afV~F~~~e~A~~Al~~l~~~~~~i~ 343 (410)
...+++|||.|||+++|+++|+++|++|| . |..|.+..+ .++|||+|.+.++|++||+ + ++..++
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G----~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~--~g~~l~ 113 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCT----IHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-K--DRESMG 113 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCC----CSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-T--TEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhC----CcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-c--CCCEEC
Confidence 35578999999999999999999999999 6 666666643 2479999999999999999 8 679999
Q ss_pred CeEEEEEecCchH
Q psy5142 344 DVKVSIEVVTGEE 356 (410)
Q Consensus 344 g~~v~v~~l~g~e 356 (410)
|+.|.|.....++
T Consensus 114 gr~i~V~~a~~~e 126 (136)
T 2hgl_A 114 HRYIEVFKSHRTE 126 (136)
T ss_dssp SSEEEEEECCHHH
T ss_pred CEEEEEEECChHH
Confidence 9999999887443
No 300
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.17 E-value=6.3e-11 Score=103.94 Aligned_cols=61 Identities=15% Similarity=0.119 Sum_probs=55.8
Q ss_pred ceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 119 AQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 119 ~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
-.+|||+|||+.+|+++|+++|++| |.|.+|.|... ..+|||||+|.+.++|++|++.++|
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~f----G~V~~V~i~~k--------~~rgfAFVeF~d~~~A~~Ai~~LnG 106 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKF----GTVLKIITFTK--------NNQFQALLQYADPVSAQHAKLSLDG 106 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHH----SCEEEEEEEES--------SSCEEEEEEESCHHHHHHHHHHSTT
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhc----CCEEEEEEEeC--------CCCCEEEEEECCHHHHHHHHHHhCC
Confidence 4689999999999999999999999 99999998531 4578999999999999999999997
No 301
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.17 E-value=2.5e-11 Score=96.41 Aligned_cols=75 Identities=21% Similarity=0.234 Sum_probs=62.3
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeC----C--CceEEEEeCChhHHHHHHHHhcCCCeEEcCeE
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNV----G--EPTAFVRYKKENNAEAVLKALGSKEIVIKDVK 346 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~----g--~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~ 346 (410)
++.+.|+|.|||+++++++|+++|++|| .|..+.+.. + .++|||+|.++++|++|++.| ++..++|+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G----~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l--~g~~~~gr~ 86 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQ----VIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL--NDRPIGSRK 86 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSC----BCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC----CccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHh--CCCeECCcE
Confidence 4458999999999999999999999999 665444432 1 246999999999999999999 678999999
Q ss_pred EEEEecC
Q psy5142 347 VSIEVVT 353 (410)
Q Consensus 347 v~v~~l~ 353 (410)
|.|....
T Consensus 87 l~v~~a~ 93 (95)
T 2ek1_A 87 VKLSGPS 93 (95)
T ss_dssp CEEECCC
T ss_pred EEEEecc
Confidence 9998654
No 302
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=1.3e-10 Score=95.88 Aligned_cols=76 Identities=20% Similarity=0.234 Sum_probs=65.2
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCe-eEEEeeCC-----CceEEEEeCChhHHHHHHHHhcCCCeEEcCeE
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQEI-VFIEFNVG-----EPTAFVRYKKENNAEAVLKALGSKEIVIKDVK 346 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V-~~V~~~~g-----~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~ 346 (410)
...++|||.|||+++++++|+++|++|| .| ..|.+..+ .++|||+|.+.++|++||.. ++..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g----~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~---~~~~~~gr~ 85 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIP----VDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL---HRKKLNGRE 85 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSC----CCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG---CSEEETTEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCC----CcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh---CCCccCCeE
Confidence 3457899999999999999999999999 77 66777642 45799999999999999876 569999999
Q ss_pred EEEEecCch
Q psy5142 347 VSIEVVTGE 355 (410)
Q Consensus 347 v~v~~l~g~ 355 (410)
|.|.....+
T Consensus 86 i~v~~a~~~ 94 (114)
T 2cpy_A 86 AFVHVVTLE 94 (114)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
Confidence 999998743
No 303
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.16 E-value=4.2e-11 Score=101.31 Aligned_cols=76 Identities=14% Similarity=0.229 Sum_probs=68.1
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCe
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDV 345 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~ 345 (410)
.++.++|+|.|||+++++++|+++|++|| .|..|.+..+ .++|||+|.+.++|++|+..| ++..|+|+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G----~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~l--ng~~i~g~ 116 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYG----PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA--NGMELDGR 116 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTS----CEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHH--TTCCSSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC----CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHh--CCCEECCE
Confidence 45678999999999999999999999999 9999999754 357999999999999999999 67889999
Q ss_pred EEEEEecC
Q psy5142 346 KVSIEVVT 353 (410)
Q Consensus 346 ~v~v~~l~ 353 (410)
.|.|....
T Consensus 117 ~l~V~~a~ 124 (129)
T 2kxn_B 117 RIRVDFSI 124 (129)
T ss_dssp CCEESCCS
T ss_pred EEEEEEec
Confidence 99998765
No 304
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.16 E-value=1.9e-10 Score=92.87 Aligned_cols=75 Identities=8% Similarity=0.203 Sum_probs=65.6
Q ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCeEEcC
Q psy5142 271 ELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE------PTAFVRYKKENNAEAVLKALGSKEIVIKD 344 (410)
Q Consensus 271 ~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~~i~g 344 (410)
...+.+.|||.|||+.+++++|+++|++|| |..|.+..+. ++|||+|.+.++|++|+ .| ++..++|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-----i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l--~g~~~~g 82 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-----IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TY--DGALLGD 82 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-----EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GG--TTCEETT
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-----ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hh--CCCeECC
Confidence 345678999999999999999999999998 7778777543 37999999999999999 88 6799999
Q ss_pred eEEEEEecC
Q psy5142 345 VKVSIEVVT 353 (410)
Q Consensus 345 ~~v~v~~l~ 353 (410)
+.|.|....
T Consensus 83 ~~l~V~~a~ 91 (103)
T 2dng_A 83 RSLRVDIAE 91 (103)
T ss_dssp EECEEEECC
T ss_pred eEEEEEEec
Confidence 999999864
No 305
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.15 E-value=1.2e-10 Score=95.28 Aligned_cols=75 Identities=15% Similarity=0.198 Sum_probs=65.4
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCeE
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDVK 346 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~ 346 (410)
..++.|||.|||..+++++|+++|++|| .|..|.+..+ .++|||+|.+.++|++|+..+ + ..++|+.
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G----~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~--~-~~l~g~~ 95 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFG----EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS--R-HELDSKT 95 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTS----CEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS--C-EEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccC----CeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC--C-CcCCCEE
Confidence 4567899999999999999999999999 9999998765 347999999999999999987 3 9999999
Q ss_pred EEEEecCc
Q psy5142 347 VSIEVVTG 354 (410)
Q Consensus 347 v~v~~l~g 354 (410)
|.|.....
T Consensus 96 l~V~~a~~ 103 (109)
T 2rs2_A 96 IDPKVAFP 103 (109)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99998753
No 306
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.15 E-value=4.1e-11 Score=90.87 Aligned_cols=67 Identities=15% Similarity=0.209 Sum_probs=60.2
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEe
Q psy5142 278 LKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE------PTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEV 351 (410)
Q Consensus 278 l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~ 351 (410)
|+|.|||+++++++|+++|++|| .|..|.+..+. ++|||+|.+.++|++|++ + ++..++|+.|.|..
T Consensus 2 l~v~nlp~~~t~~~l~~~F~~~G----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~--~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 2 IFVGGLSVNTTVEDVKHYFEQFG----KVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-I--HFHEINNKMVECKK 74 (75)
T ss_dssp EEEECCCSSCCHHHHHHHHHTTS----CCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-S--SCCCSSSCCCEEEC
T ss_pred EEEecCCCCCCHHHHHHHHHhcC----CEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-C--CCCEECCEEEEEEe
Confidence 78999999999999999999999 99999887653 479999999999999998 7 67889999998864
No 307
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=2.1e-10 Score=92.52 Aligned_cols=74 Identities=12% Similarity=0.216 Sum_probs=65.4
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCeEEcCe
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE------PTAFVRYKKENNAEAVLKALGSKEIVIKDV 345 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~~i~g~ 345 (410)
..+.+.|||.|||+.+++++|+++|++|| .|..|.+..+. ++|||+|.+.++|++|+.. +..++|+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G----~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~----~~~~~g~ 83 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFG----EVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ----RHMIDGR 83 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGS----CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS----CEEETTE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcC----CeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc----CCeeCCe
Confidence 45567899999999999999999999999 99999987653 3699999999999999983 4799999
Q ss_pred EEEEEecC
Q psy5142 346 KVSIEVVT 353 (410)
Q Consensus 346 ~v~v~~l~ 353 (410)
.|.|.+..
T Consensus 84 ~l~v~~a~ 91 (103)
T 2cqg_A 84 WCDCKLPN 91 (103)
T ss_dssp EEEEECCC
T ss_pred EEEEEecC
Confidence 99999865
No 308
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=1.9e-11 Score=95.16 Aligned_cols=72 Identities=15% Similarity=0.190 Sum_probs=62.5
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCeE
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDVK 346 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~ 346 (410)
.+++.|+|.|||+.+++++|+++|++|| .|..|.+..+ .++|||.|.+.++|++|+..| ++..++|+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G----~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~ 76 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYG----KIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL--KASGVQAQM 76 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTS----CEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHH--HHHTCCEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC----CeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHh--cCCeEeeEE
Confidence 4567999999999999999999999999 9999998865 347999999999999999999 567777776
Q ss_pred EEEE
Q psy5142 347 VSIE 350 (410)
Q Consensus 347 v~v~ 350 (410)
++++
T Consensus 77 ~~~~ 80 (85)
T 1x4e_A 77 AKQS 80 (85)
T ss_dssp CCSS
T ss_pred Eeec
Confidence 6543
No 309
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.14 E-value=1.6e-10 Score=101.67 Aligned_cols=99 Identities=25% Similarity=0.358 Sum_probs=72.1
Q ss_pred cHHHHHHHHhhcCCceEEEecCccceecCCCCCCCCCchhhhhhccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEE
Q psy5142 73 EAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITN 152 (410)
Q Consensus 73 d~~~i~~Al~~~~S~~levsed~~~vrR~~~~p~p~~~~~~~~~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~ 152 (410)
+.+.+..||. .+...+..-...|.+.. +.+. ......++|||+|||.++|+++|+++|++| |.|..
T Consensus 63 ~~~~a~~A~~---l~g~~~~g~~l~v~~~~--~~~~-----~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~----g~v~~ 128 (175)
T 1fje_B 63 SAEDLEKALE---LTGLKVFGNEIKLEKPK--GRDS-----KKVRAARTLLAKNLSFNITEDELKEVFEDA----LEIRL 128 (175)
T ss_dssp SHHHHHHHHH---GGGEEETTEEEEEECCC--CSSC-----STTGGGGEEEEESCCSSCCHHHHHHHCTTC----SEEEE
T ss_pred CHHHHHHHHh---cCCCEeCCeEEEEecCC--Cccc-----cccccCCEEEEeCCCCCCCHHHHHHHHHhc----CeEEE
Confidence 3566666774 23445554444455442 1111 123567899999999999999999999999 99877
Q ss_pred EEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 153 IIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 153 v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
+ ...+ .++|+|||+|.+.++|.+|+..++| ..+
T Consensus 129 ~----~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g--~~~ 161 (175)
T 1fje_B 129 V----SQDG-----KSKGIAYIEFKSEADAEKNLEEKQG--AEI 161 (175)
T ss_dssp E----CSSS-----SCCSEEEEECSSHHHHHHHHHHHTE--EEE
T ss_pred e----cCCC-----CCceEEEEEECCHHHHHHHHHHhCC--CEE
Confidence 6 2223 7899999999999999999999886 455
No 310
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.14 E-value=1.7e-10 Score=89.87 Aligned_cols=74 Identities=12% Similarity=0.304 Sum_probs=65.1
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhc----CCC---CCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeE
Q psy5142 274 TGALLKISDIKEPVSREDIREVLEKV----QTD---DQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVK 346 (410)
Q Consensus 274 ~g~~l~v~nL~~~~t~edLk~~F~~~----G~~---~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~ 346 (410)
+.+.|||.|||+++++++|+++|++| |.. ...|..|.+.++.++|||+|.+.++|++|+ .| ++..++|+.
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l--~g~~~~g~~ 81 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AF--DGIIFQGQS 81 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GG--TTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hc--CCCEECCeE
Confidence 35689999999999999999999999 611 126888999988899999999999999999 88 678999999
Q ss_pred EEEE
Q psy5142 347 VSIE 350 (410)
Q Consensus 347 v~v~ 350 (410)
|.|+
T Consensus 82 l~V~ 85 (87)
T 2hzc_A 82 LKIR 85 (87)
T ss_dssp CEEE
T ss_pred EEEe
Confidence 9886
No 311
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.75 E-value=4.4e-12 Score=104.93 Aligned_cols=75 Identities=13% Similarity=0.209 Sum_probs=64.7
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeE--------EEeeCC------CceEEEEeCChhHHHHHHHHhcCC
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVF--------IEFNVG------EPTAFVRYKKENNAEAVLKALGSK 338 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~--------V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~ 338 (410)
.+.+.|||.|||.++++++|+++|++|| .|.. |.+..+ .++|||+|.+.++|++|+..| +
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G----~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l--~ 78 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIG----IIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWF--D 78 (116)
Confidence 4567899999999999999999999999 8877 666654 347999999999999999999 6
Q ss_pred CeEEcCeEEEEEecC
Q psy5142 339 EIVIKDVKVSIEVVT 353 (410)
Q Consensus 339 ~~~i~g~~v~v~~l~ 353 (410)
+..++|+.|.|....
T Consensus 79 g~~~~g~~l~V~~a~ 93 (116)
T 2lcw_A 79 GKEFSGNPIKVSFAT 93 (116)
Confidence 788999999887643
No 312
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=1.1e-10 Score=95.95 Aligned_cols=76 Identities=16% Similarity=0.240 Sum_probs=66.4
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCe----eEEEeeCCC--ceEEEEeCChhHHHHHHHHhcCCCeEEcCe
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEI----VFIEFNVGE--PTAFVRYKKENNAEAVLKALGSKEIVIKDV 345 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V----~~V~~~~g~--~~afV~F~~~e~A~~Al~~l~~~~~~i~g~ 345 (410)
.++.+.|||.|||+.+++++|+++|++|| .| ..+++..+. ++|||+|.+.++|++|+..| ++..++|+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G----~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l--~g~~~~g~ 95 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQ----EKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLV--NGYKLYGK 95 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHH----HSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHS--TTCBCSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhC----CccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHh--CCCEeCCc
Confidence 35678999999999999999999999999 66 566666554 68999999999999999999 67889999
Q ss_pred EEEEEecC
Q psy5142 346 KVSIEVVT 353 (410)
Q Consensus 346 ~v~v~~l~ 353 (410)
.|.|....
T Consensus 96 ~l~v~~a~ 103 (115)
T 2cpx_A 96 ILVIEFGK 103 (115)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcc
Confidence 99999865
No 313
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=8e-11 Score=95.38 Aligned_cols=74 Identities=14% Similarity=0.230 Sum_probs=62.0
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC-----ceEEEEeCChhHHHHHHHHhcCCCeEEcCeE
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE-----PTAFVRYKKENNAEAVLKALGSKEIVIKDVK 346 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~-----~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~ 346 (410)
....++|||.|||+++++++|+++|++|| .+ .|.+..+. ++|||+|.++++|++||+ + ++..|+|+.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G----~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~--~~~~~~gr~ 83 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLN----PM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-K--DKANMQHRY 83 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCC----CS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-T--SSCCSSSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC----ce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-h--CCCeECCcE
Confidence 34567999999999999999999999999 55 66666432 369999999999999994 6 568899999
Q ss_pred EEEEecC
Q psy5142 347 VSIEVVT 353 (410)
Q Consensus 347 v~v~~l~ 353 (410)
|.|....
T Consensus 84 i~V~~~~ 90 (102)
T 1wez_A 84 VELFLNS 90 (102)
T ss_dssp CEEEEEC
T ss_pred EEEEECC
Confidence 9998754
No 314
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=1.9e-10 Score=92.44 Aligned_cols=76 Identities=20% Similarity=0.274 Sum_probs=64.5
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC--CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEE
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG--EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSI 349 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g--~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v 349 (410)
..+.+.|||.|||+.+++++|+++|++|| .|..+....+ .++|||+|.+.++|++|+..| ++..++|+.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g----~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v 85 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKAT----FIKVPQNQNGKSKGYAFIEFASFEDAKEALNSC--NKREIEGRAIRL 85 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCS----EEECCBCSSSCBCSEEEEECSSHHHHHHHHHHT--SSEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCC----EEEEEECCCCCEeeEEEEEECCHHHHHHHHHHh--CCCEeCCeEEEE
Confidence 35578999999999999999999999999 8743322222 457999999999999999999 689999999999
Q ss_pred EecC
Q psy5142 350 EVVT 353 (410)
Q Consensus 350 ~~l~ 353 (410)
....
T Consensus 86 ~~a~ 89 (101)
T 2fc9_A 86 ELQG 89 (101)
T ss_dssp EECS
T ss_pred EEcC
Confidence 9864
No 315
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.13 E-value=1.2e-10 Score=94.85 Aligned_cols=69 Identities=14% Similarity=0.118 Sum_probs=58.8
Q ss_pred cceeeEeecCCC-----CCCHHHHHHHHhhccCCCCceEEEEEcccCcc-cccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 118 IAQSLYVKYIPV-----DATLDDIKDFFKKNTSEDVKITNIIMRNYQDK-LANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 118 ~~rtv~V~~lp~-----~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~-~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
..++|+|.|+.. +.++++|++.|++| |.|.+|.|++++.+ + .++|+|||+|.+.++|.+|+..++|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~----G~V~~v~i~~~~~~~~----~~~G~~FV~f~~~~~A~~Ai~~lnG 78 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKY----GKVGKCVIFEIPGAPD----DEAVRIFLEFERVESAIKAVVDLNG 78 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGG----SCEEEEEEEECSSCCT----TTSEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhc----CCEEEEEEecCCCCCC----CCcEEEEEEECCHHHHHHHHHHHCC
Confidence 468999999963 24789999999999 99999999987643 2 6899999999999999999999997
Q ss_pred CCccc
Q psy5142 192 KNLKF 196 (410)
Q Consensus 192 ~~~~~ 196 (410)
..|
T Consensus 79 --~~~ 81 (105)
T 2pe8_A 79 --RYF 81 (105)
T ss_dssp --CEE
T ss_pred --CEE
Confidence 456
No 316
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.13 E-value=1.1e-10 Score=98.55 Aligned_cols=60 Identities=17% Similarity=0.149 Sum_probs=55.1
Q ss_pred ceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccE-EEEEecCHHHHHHHHHhcCC
Q psy5142 119 AQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGS-IFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 119 ~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~-afVeF~~~e~A~~Al~~~~g 191 (410)
-..|||+|||+.+|+++|+++|++| |.|.+|.|.+ +.+|| |||+|.+.++|++|++.++|
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~y----G~V~~V~i~~---------~~~gfqAFVef~~~~~A~~Ai~~LnG 88 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKF----GTVLKIITFT---------KNNQFQALLQYADPVSAQHAKLSLDG 88 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTS----SCEEEEEEEE---------ETTEEEEEEEESCHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCc----CCEEEEEEEc---------CCCCcEEEEEECCHHHHHHHHHHcCC
Confidence 3679999999999999999999999 9999999874 34677 99999999999999999997
No 317
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.13 E-value=3.2e-10 Score=99.11 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=67.0
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEE
Q psy5142 274 TGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKV 347 (410)
Q Consensus 274 ~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v 347 (410)
..+.|||.|||+++++++|+++|++|| .+.|..|.+..+ .++|||.|.+.++|++||..| ++..|+|+.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G--~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~l--ng~~~~Gr~l 129 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIG--VYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELL--PGKVLNGEKV 129 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTT--CCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHS--TTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHC--CccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHc--CCCEECCeEe
Confidence 457999999999999999999999999 125777877654 236999999999999999999 6789999999
Q ss_pred EEEecCchH
Q psy5142 348 SIEVVTGEE 356 (410)
Q Consensus 348 ~v~~l~g~e 356 (410)
.|.......
T Consensus 130 ~V~~a~~~~ 138 (156)
T 3n9u_C 130 DVRPATRQN 138 (156)
T ss_dssp EEEECCHHH
T ss_pred EEEEcCCCc
Confidence 999887543
No 318
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=2.7e-10 Score=89.75 Aligned_cols=74 Identities=16% Similarity=0.175 Sum_probs=63.6
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC-----CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEE
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG-----EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKV 347 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g-----~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v 347 (410)
...+.|+|.|||+++++++|+++|++|+ |..|.+..+ .++|||+|.+.++|++|+. + ++..++|+.|
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~~-----i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~--~g~~~~gr~i 79 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPLK-----PVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-C--NREYMGGRYI 79 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTSC-----CSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-S--CSEEETTEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhCC-----ceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-h--CCceeCCcEE
Confidence 4567999999999999999999999995 556666654 2369999999999999999 8 7899999999
Q ss_pred EEEecCc
Q psy5142 348 SIEVVTG 354 (410)
Q Consensus 348 ~v~~l~g 354 (410)
.|.....
T Consensus 80 ~v~~a~~ 86 (91)
T 2dgw_A 80 EVFREKS 86 (91)
T ss_dssp EEEEESS
T ss_pred EEEECCc
Confidence 9988753
No 319
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=1.4e-10 Score=93.84 Aligned_cols=76 Identities=16% Similarity=0.194 Sum_probs=67.1
Q ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCeEEcC
Q psy5142 271 ELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE------PTAFVRYKKENNAEAVLKALGSKEIVIKD 344 (410)
Q Consensus 271 ~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~~i~g 344 (410)
..+..+.|||.|||+.+++++|+++|++|| .|..|.+..+. ++|||+|.+.++|++|+.. ++..++|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G----~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~---~~~~~~g 84 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYG----EVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS---RPHTLDG 84 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTS----CEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH---CSEEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC----CeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh---CCCeECC
Confidence 345678999999999999999999999999 99999988753 3699999999999999998 4689999
Q ss_pred eEEEEEecC
Q psy5142 345 VKVSIEVVT 353 (410)
Q Consensus 345 ~~v~v~~l~ 353 (410)
+.|.|....
T Consensus 85 ~~l~V~~a~ 93 (105)
T 2dh8_A 85 RNIDPKPCT 93 (105)
T ss_dssp EEEBCCCSC
T ss_pred EEEEEEEcc
Confidence 999998754
No 320
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=2.8e-10 Score=93.94 Aligned_cols=73 Identities=15% Similarity=0.115 Sum_probs=65.2
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEE
Q psy5142 274 TGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKV 347 (410)
Q Consensus 274 ~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v 347 (410)
..+.|||.|||+.+++++|+++|++|| .|..|.+..+ .++|||+|.+.++|++||.. ++..++|+.|
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G----~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~---~~~~~~g~~l 98 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWG----KLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA---RPHSIDGRVV 98 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSC----CCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS---CSEEETTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC----CEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh---CCcEECCEEE
Confidence 357999999999999999999999999 9999998875 34799999999999999986 4789999999
Q ss_pred EEEecC
Q psy5142 348 SIEVVT 353 (410)
Q Consensus 348 ~v~~l~ 353 (410)
.|....
T Consensus 99 ~V~~a~ 104 (116)
T 1x4b_A 99 EPKRAV 104 (116)
T ss_dssp EEECCS
T ss_pred EEEECC
Confidence 998754
No 321
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.11 E-value=1.3e-10 Score=91.24 Aligned_cols=73 Identities=8% Similarity=0.262 Sum_probs=64.0
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEecC
Q psy5142 274 TGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVT 353 (410)
Q Consensus 274 ~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l~ 353 (410)
..+.|+|.|||+++++++|+++|++|. |..|.+....++|||+|.++++|++|+..| ++..++|+.|.|....
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~~-----v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l--~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDYD-----LKYCYVDRNKRTAFVTLLNGEQAQNAIQMF--HQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSSC-----CCCEEEEGGGTEEEECCSCHHHHHHHHHHH--TTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCC-----eEEEEEeCCCcEEEEEECCHHHHHHHHHHh--CCCeECCcEEEEEEcC
Confidence 346899999999999999999999994 555555566789999999999999999999 7899999999998764
No 322
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.11 E-value=6.2e-11 Score=96.67 Aligned_cols=76 Identities=12% Similarity=0.179 Sum_probs=65.8
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCC---eeEEEeeCC-----CceEEEEeCChhHHHHHHHHhcCCCeEEc
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQE---IVFIEFNVG-----EPTAFVRYKKENNAEAVLKALGSKEIVIK 343 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~---V~~V~~~~g-----~~~afV~F~~~e~A~~Al~~l~~~~~~i~ 343 (410)
...+++|||.|||+++++++|+++|+.|| . |..|.+..+ .++|||+|.+.++|++||. + ++..++
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g----~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~--~~~~~~ 80 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCR----IRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-K--HRMYMG 80 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSC----BTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-T--TTCCSS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcC----CcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-h--CcceeC
Confidence 35678999999999999999999999998 6 777777653 3479999999999999999 7 568899
Q ss_pred CeEEEEEecCc
Q psy5142 344 DVKVSIEVVTG 354 (410)
Q Consensus 344 g~~v~v~~l~g 354 (410)
|+.|.|.....
T Consensus 81 gr~i~V~~a~~ 91 (107)
T 2lmi_A 81 QRYVEVYEINN 91 (107)
T ss_dssp SSCCCCEECCH
T ss_pred CeEEEEEECCH
Confidence 99999998764
No 323
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.11 E-value=9.4e-11 Score=98.04 Aligned_cols=62 Identities=23% Similarity=0.270 Sum_probs=55.7
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|| ++|+++|+++|++| |.|.+|.|. .++|||||+|.+.++|++|+..++| ..+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~----G~I~~v~i~----------~~kg~aFV~f~~~~~A~~Ai~~lng--~~~ 98 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPF----GNIIDLSMD----------PPRNCAFVTYEKMESADQAVAELNG--TQV 98 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTT----CCCSCEEEE----------TTTTEEEEECSSHHHHHHHHHHHTT--CBC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHcc----CCEEEEEEe----------CCCCEEEEEECCHHHHHHHHHHhCC--CEE
Confidence 45789999995 69999999999999 999999985 4689999999999999999999886 455
No 324
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.11 E-value=1.3e-10 Score=97.10 Aligned_cols=72 Identities=13% Similarity=0.238 Sum_probs=64.5
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEE
Q psy5142 275 GALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVS 348 (410)
Q Consensus 275 g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~ 348 (410)
.+.|||.|||.++++++|+++|++|| .|..|.+..+ .++|||+|.+.++|++|+ .| ++..++|+.|.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l--~g~~~~g~~l~ 108 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCG----SINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AM--DETVFRGRTIK 108 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTS----CEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TT--TTCEETTEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC----CEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hc--CCCeECCeEEE
Confidence 46899999999999999999999999 9999988754 347999999999999999 78 67899999999
Q ss_pred EEecC
Q psy5142 349 IEVVT 353 (410)
Q Consensus 349 v~~l~ 353 (410)
|....
T Consensus 109 V~~a~ 113 (124)
T 2jwn_A 109 VLPKR 113 (124)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 98754
No 325
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.10 E-value=2.8e-10 Score=103.92 Aligned_cols=75 Identities=11% Similarity=0.158 Sum_probs=68.7
Q ss_pred CCCeEEEEeCCC-CCCCHHHHHHHHHhcCCCCCCeeEEEeeCC-CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEE
Q psy5142 273 PTGALLKISDIK-EPVSREDIREVLEKVQTDDQEIVFIEFNVG-EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIE 350 (410)
Q Consensus 273 ~~g~~l~v~nL~-~~~t~edLk~~F~~~G~~~~~V~~V~~~~g-~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~ 350 (410)
+++++|+|.||| +.+++++|+++|++|| .|..|.+.++ .++|||+|.++++|++|++.| ++..+.|+.|.|.
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G----~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l--ng~~~~g~~l~v~ 75 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYG----NVEKVKFMKSKPGAAMVEMADGYAVDRAITHL--NNNFMFGQKMNVC 75 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTS----CEEEEEECTTSTTCEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcC----CeEEEEEecCCCCEEEEEECCHHHHHHHHHHh--CCCEECCceEEEE
Confidence 457899999999 8999999999999999 9999999875 478999999999999999999 6799999999999
Q ss_pred ecC
Q psy5142 351 VVT 353 (410)
Q Consensus 351 ~l~ 353 (410)
...
T Consensus 76 ~s~ 78 (205)
T 3tyt_A 76 VSK 78 (205)
T ss_dssp ECS
T ss_pred Ecc
Confidence 764
No 326
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.10 E-value=4.8e-11 Score=93.80 Aligned_cols=73 Identities=8% Similarity=0.218 Sum_probs=63.7
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEE
Q psy5142 276 ALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSI 349 (410)
Q Consensus 276 ~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v 349 (410)
+.|+|.|||.++++++|+++|++|| .|..|.+..+ .++|||+|.+.+ |.+|+..| ++..++|+.|.|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G----~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l--~g~~~~g~~l~V 74 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFG----KVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKL--DNTDFMGRTIRV 74 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHT----CCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTS--CSSCCSSSSCSE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcC----CEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHh--CCCEECCeEEEE
Confidence 4799999999999999999999999 9999988754 347999999999 99999999 678899999999
Q ss_pred EecCch
Q psy5142 350 EVVTGE 355 (410)
Q Consensus 350 ~~l~g~ 355 (410)
......
T Consensus 75 ~~a~~~ 80 (90)
T 2ki2_A 75 TEANPK 80 (90)
T ss_dssp EEC---
T ss_pred EEcCCC
Confidence 987643
No 327
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.10 E-value=2.5e-10 Score=90.77 Aligned_cols=75 Identities=21% Similarity=0.339 Sum_probs=65.5
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC--CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEE
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG--EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSI 349 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g--~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v 349 (410)
..+.+.|||.|||..+++++|+++|++|| .|..+ ...+ .++|||+|.+.++|++|+..| ++..++|+.|.|
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g----~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v 85 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDAL----EIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEK--QGAEIDGRSVSL 85 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEE----EECCE-EETTEEEEEEEEEESSHHHHHHHHHHT--TEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCC----cEEEe-CCCCCcceEEEEEECCHHHHHHHHHHh--CCCEECCeEEEE
Confidence 34568999999999999999999999999 88777 3333 347999999999999999999 679999999999
Q ss_pred EecC
Q psy5142 350 EVVT 353 (410)
Q Consensus 350 ~~l~ 353 (410)
....
T Consensus 86 ~~a~ 89 (96)
T 1fjc_A 86 YYTG 89 (96)
T ss_dssp EECS
T ss_pred EEcC
Confidence 8764
No 328
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=1.5e-10 Score=91.72 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=48.9
Q ss_pred eeeEeecCCCCCCHHH----HHHHHhhccCCCC-ceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 120 QSLYVKYIPVDATLDD----IKDFFKKNTSEDV-KITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 120 rtv~V~~lp~~~t~~~----L~~~F~~~~~~~G-~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
.+|||+|||+.++.++ |+++|++| | +|.+| + . |+|||+|.+.++|++|++.++|
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~y----GG~Vl~V-------t-----g--G~AfV~F~~~esA~~A~~~l~G 68 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNC----GGKVLSI-------T-----G--CSAILRFINQDSAERAQKRMEN 68 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTT----TCCEEEC-------C-----T--TCEEEEESSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHc----CCeeEEE-------e-----c--CEEEEEECCHHHHHHHHHHhcC
Confidence 4599999999999988 55899999 9 99988 2 2 9999999999999999999997
No 329
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.09 E-value=3.5e-10 Score=94.93 Aligned_cols=72 Identities=21% Similarity=0.180 Sum_probs=62.2
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCce-EEEEeCChhHHHHHHHHhcCCCeEEcC--eEEEEEec
Q psy5142 276 ALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPT-AFVRYKKENNAEAVLKALGSKEIVIKD--VKVSIEVV 352 (410)
Q Consensus 276 ~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~-afV~F~~~e~A~~Al~~l~~~~~~i~g--~~v~v~~l 352 (410)
+.|+|.||++.+++++|+++|++|| .|..|.+....+. |||+|.+.++|..|++.| +|..|.| +.|.|...
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG----~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~L--nG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVG----KVQRIVIFKRNGIQAMVEFESVLCAQKAKAAL--NGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTS----CEEEEEEEESSSEEEEEEESSHHHHHHHHHHH--TTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcC----CEEEEEEEeCCCCEEEEEECCHHHHHHHHHHh--CCCEecCCCeEEEEEEe
Confidence 3467899999999999999999999 9998887665575 999999999999999999 6777876 57888765
Q ss_pred C
Q psy5142 353 T 353 (410)
Q Consensus 353 ~ 353 (410)
.
T Consensus 100 k 100 (124)
T 2e5i_A 100 R 100 (124)
T ss_dssp S
T ss_pred c
Confidence 4
No 330
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=1e-10 Score=97.99 Aligned_cols=78 Identities=13% Similarity=0.204 Sum_probs=64.3
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeE-EEe---eCC--CceEEEEeCChhHHHHHHHHhcCCCeEEcCe
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVF-IEF---NVG--EPTAFVRYKKENNAEAVLKALGSKEIVIKDV 345 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~-V~~---~~g--~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~ 345 (410)
....+.|||.|||+++++++|+++|++|| .|.. +.+ ..+ .++|||+|.+.++|++||. + ++..|+|+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G----~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~--~g~~~~gr 94 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLD----IVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-R--HKQYMGNR 94 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSC----BCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-S--CSBCSTTS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC----CccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-h--CCCeECCc
Confidence 34568999999999999999999999999 6543 122 222 3469999999999999999 8 67999999
Q ss_pred EEEEEecCchH
Q psy5142 346 KVSIEVVTGEE 356 (410)
Q Consensus 346 ~v~v~~l~g~e 356 (410)
.|.|.....++
T Consensus 95 ~i~V~~a~~~~ 105 (124)
T 1wel_A 95 FIQVHPITKKG 105 (124)
T ss_dssp CBEEEEECHHH
T ss_pred EEEEEECCHHH
Confidence 99999987543
No 331
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.09 E-value=3.5e-10 Score=100.87 Aligned_cols=79 Identities=23% Similarity=0.318 Sum_probs=70.4
Q ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC-----CceEEEEeCChhHHHHHHHHhcCCCeEEcCe
Q psy5142 271 ELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG-----EPTAFVRYKKENNAEAVLKALGSKEIVIKDV 345 (410)
Q Consensus 271 ~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g-----~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~ 345 (410)
...+++.|||.|||+.+++++|+++|++|| .|..|.+..+ .++|||.|.+.++|++|+..| ++..++|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G----~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~l--ng~~l~Gr 157 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFG----TLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQY--KGVPLDGR 157 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTS----CCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHS--TTCBCSSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC----CeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHh--CCCEECCE
Confidence 346689999999999999999999999999 9999998764 357999999999999999999 67899999
Q ss_pred EEEEEecCch
Q psy5142 346 KVSIEVVTGE 355 (410)
Q Consensus 346 ~v~v~~l~g~ 355 (410)
.|.|.++...
T Consensus 158 ~l~V~~a~~~ 167 (177)
T 2f3j_A 158 PMDIQLVASQ 167 (177)
T ss_dssp BCEEEEESSG
T ss_pred EEEEEEecCC
Confidence 9999987644
No 332
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=4e-10 Score=92.50 Aligned_cols=72 Identities=8% Similarity=0.203 Sum_probs=62.5
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC-----CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEE
Q psy5142 274 TGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG-----EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVS 348 (410)
Q Consensus 274 ~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g-----~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~ 348 (410)
..+.|+|.|||+++++++|+++|++|+ |..|.+..+ .++|||+|.++++|++|| .+ ++..|+|+.|.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~~-----v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~--~~~~~~gr~i~ 86 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGLR-----VDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KR--NRMLMIQRYVE 86 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTSC-----CCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HT--TTEEETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCC-----eeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hc--CCCeECCeEEE
Confidence 357999999999999999999999996 566777643 457999999999999999 57 67899999999
Q ss_pred EEecC
Q psy5142 349 IEVVT 353 (410)
Q Consensus 349 v~~l~ 353 (410)
|....
T Consensus 87 V~~a~ 91 (109)
T 2dnn_A 87 VSPAT 91 (109)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 98876
No 333
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.08 E-value=2.9e-10 Score=95.47 Aligned_cols=58 Identities=17% Similarity=0.151 Sum_probs=52.8
Q ss_pred eeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccE-EEEEecCHHHHHHHHHhcCC
Q psy5142 120 QSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGS-IFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 120 rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~-afVeF~~~e~A~~Al~~~~g 191 (410)
..|||+|||+.+|+++|+++|++| |.|.+|+|.. + .|| |||+|.+.++|..|++.++|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~y----G~V~~v~i~~---------~-~Gf~aFVef~~~~~A~~A~~~LnG 84 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPV----GKVQRIVIFK---------R-NGIQAMVEFESVLCAQKAKAALNG 84 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTT----SCEEEEEEEE---------S-SSEEEEEEESSHHHHHHHHHHHTT
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhc----CCEEEEEEEe---------C-CCCEEEEEECCHHHHHHHHHHhCC
Confidence 457899999999999999999999 9999999853 2 376 99999999999999999997
No 334
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.08 E-value=9.6e-11 Score=88.73 Aligned_cols=68 Identities=21% Similarity=0.311 Sum_probs=59.8
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEE
Q psy5142 277 LLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIE 350 (410)
Q Consensus 277 ~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~ 350 (410)
.|+|.|||+++++++|+++|++|| .|..|.+..+ .++|||.|.++++|++|++. ++..++|+.|.|+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~---~~~~~~g~~l~v~ 73 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFG----EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK---KYHNVGLSKCEIK 73 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHS----CCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT---SSCCBTTBCCCEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcC----CeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh---CCCeECCEEEEEE
Confidence 379999999999999999999999 9999988754 34799999999999999985 4678999998887
Q ss_pred e
Q psy5142 351 V 351 (410)
Q Consensus 351 ~ 351 (410)
.
T Consensus 74 ~ 74 (75)
T 1iqt_A 74 V 74 (75)
T ss_dssp E
T ss_pred E
Confidence 5
No 335
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=2.9e-10 Score=90.24 Aligned_cols=71 Identities=13% Similarity=0.108 Sum_probs=61.0
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCc-eEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEec
Q psy5142 275 GALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEP-TAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVV 352 (410)
Q Consensus 275 g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~-~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l 352 (410)
...|||.|||+++++++|+++|++|| .|..|-+.+..+ +|||+|.+.++|++|+. | ++..++|+.|.|...
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G----~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l--~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFG----PVASVVMDKDKGVFAIVEMGDVGAREAVLS-Q--SQHSLGGHRLRVRPR 79 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTS----CEEEEEECSSSCCEEEEEESSHHHHHHHHT-C--SCCEETTEECCCBCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcC----CeEEEEEcCCCCcEEEEEECCHHHHHHHHh-c--CCeEECCEEEEEEEC
Confidence 35899999999999999999999999 998883332211 89999999999999999 8 679999999988754
No 336
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.06 E-value=2.3e-10 Score=96.73 Aligned_cols=75 Identities=12% Similarity=0.204 Sum_probs=65.4
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeE--EEeeCCC------ceEEEEeCChhHHHHHHHHhcCCCe---
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVF--IEFNVGE------PTAFVRYKKENNAEAVLKALGSKEI--- 340 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~--V~~~~g~------~~afV~F~~~e~A~~Al~~l~~~~~--- 340 (410)
......|||.|||+++++++|+++|++|| .|.. |.++.+. ++|||+|.+. +|.+|+..| ++.
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G----~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l--~g~~~~ 92 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYA----VLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQIL--QALHPP 92 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGC----CCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHH--TTCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhC----CcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHh--cCCCCC
Confidence 35567999999999999999999999999 8866 7776543 5799999999 999999999 566
Q ss_pred -EEcCeEEEEEecC
Q psy5142 341 -VIKDVKVSIEVVT 353 (410)
Q Consensus 341 -~i~g~~v~v~~l~ 353 (410)
.++|+.|.|....
T Consensus 93 ~~~~gr~l~V~~a~ 106 (131)
T 2m2b_A 93 LTIDGKTINVEFAK 106 (131)
T ss_dssp CCGGGCCCCCEECC
T ss_pred ccCCCEEEEEEECC
Confidence 8999999998865
No 337
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=2.8e-10 Score=92.23 Aligned_cols=75 Identities=17% Similarity=0.251 Sum_probs=64.4
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeE-EEeeCC-----CceEEEEeCChhHHHHHHHHhcCCCeEEcCe
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVF-IEFNVG-----EPTAFVRYKKENNAEAVLKALGSKEIVIKDV 345 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~-V~~~~g-----~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~ 345 (410)
....+.|||.|||+++++++|+++|++|| .|.. |.+..+ .++|||+|.++++|++||.. ++..++|+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G----~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~---~~~~~~gr 84 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLE----IVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK---HKERIGHR 84 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCC----EEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT---TTCCSSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC----CcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh---CcchhCCc
Confidence 45678999999999999999999999999 8876 777643 35799999999999999986 36789999
Q ss_pred EEEEEecC
Q psy5142 346 KVSIEVVT 353 (410)
Q Consensus 346 ~v~v~~l~ 353 (410)
.|.|....
T Consensus 85 ~i~v~~~~ 92 (104)
T 1wg5_A 85 YIEIFKSS 92 (104)
T ss_dssp CCEEEEEC
T ss_pred EEEEEECC
Confidence 99998765
No 338
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=3.3e-10 Score=93.13 Aligned_cols=76 Identities=13% Similarity=0.193 Sum_probs=64.8
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC-----ceEEEEeCChhHHHHHHHHhcCCCeEE----
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE-----PTAFVRYKKENNAEAVLKALGSKEIVI---- 342 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~-----~~afV~F~~~e~A~~Al~~l~~~~~~i---- 342 (410)
....+.|||.|||..+++++|+++|++|| .|..|.+..+. ++|||+|.+.++|++|+..| ++..+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G----~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~~~~ 95 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFG----QVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHF--NGKFIKTPP 95 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTS----CEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHH--BTCCCCCCT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC----CEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHh--CCCEEcCCc
Confidence 34567999999999999999999999999 99999988652 46999999999999999999 45666
Q ss_pred ----cCeEEEEEecC
Q psy5142 343 ----KDVKVSIEVVT 353 (410)
Q Consensus 343 ----~g~~v~v~~l~ 353 (410)
.++.|.|....
T Consensus 96 ~~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 96 GVSAPTEPLLCKFSG 110 (114)
T ss_dssp TSCCCSSCBEEEECC
T ss_pred cccCCCCceeEEccC
Confidence 56778887654
No 339
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=4.8e-10 Score=88.73 Aligned_cols=70 Identities=14% Similarity=0.291 Sum_probs=60.6
Q ss_pred CCeEEEEeCCCCCCCHHH----HHHHHHhc-CCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEE
Q psy5142 274 TGALLKISDIKEPVSRED----IREVLEKV-QTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVS 348 (410)
Q Consensus 274 ~g~~l~v~nL~~~~t~ed----Lk~~F~~~-G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~ 348 (410)
..++|||.|||+.++.++ |+++|++| | .|..| .+ +.|||+|.+.++|.+|++.| ++..+.|++|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG----~Vl~V---tg-G~AfV~F~~~esA~~A~~~l--~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGG----KVLSI---TG-CSAILRFINQDSAERAQKRM--ENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTC----CEEEC---CT-TCEEEEESSHHHHHHHHHHH--TTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCC----eeEEE---ec-CEEEEEECCHHHHHHHHHHh--cCCccCCceEE
Confidence 445699999999999888 55899999 7 77666 33 88999999999999999999 68899999999
Q ss_pred EEecC
Q psy5142 349 IEVVT 353 (410)
Q Consensus 349 v~~l~ 353 (410)
|....
T Consensus 78 v~~A~ 82 (96)
T 2diu_A 78 VSFTP 82 (96)
T ss_dssp EESSC
T ss_pred EEecC
Confidence 98765
No 340
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.05 E-value=4.9e-11 Score=102.23 Aligned_cols=73 Identities=12% Similarity=0.245 Sum_probs=61.5
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC-----CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEE
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG-----EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKV 347 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g-----~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v 347 (410)
...++|||.|||+++++++|+++|++|| .+ .|.+..+ .++|||+|.++++|++|| .+ ++..|+|+.|
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G----i~-~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~--~g~~l~gR~i 115 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN----PV-RVHIEIGPDGRVTGEADVEFATHEEAVAAM-SK--DRANMQHRYI 115 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC----CS-EEECCCSSSSCSSCCCEEECSHHHHHHHHT-TC--CSCSSSSCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC----Ce-EEEEEECCCCCCceEEEEEeCCHHHHHHHH-hh--CCCEECCEEE
Confidence 4467899999999999999999999999 43 6777643 347999999999999999 66 5788999999
Q ss_pred EEEecC
Q psy5142 348 SIEVVT 353 (410)
Q Consensus 348 ~v~~l~ 353 (410)
.|....
T Consensus 116 ~V~~a~ 121 (139)
T 2hgn_A 116 ELFLNS 121 (139)
T ss_dssp CCEECC
T ss_pred EEEECC
Confidence 888765
No 341
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.05 E-value=4.8e-10 Score=93.68 Aligned_cols=75 Identities=16% Similarity=0.284 Sum_probs=67.9
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEe
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEV 351 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~ 351 (410)
..+.+.|||.|+ ++++++|+++|++|| .|..|.+....++|||.|.+.++|++|+..| ++..++|+.|.|..
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G----~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~l--ng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFG----NIIDLSMDPPRNCAFVTYEKMESADQAVAEL--NGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTC----CCSCEEEETTTTEEEEECSSHHHHHHHHHHH--TTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccC----CEEEEEEeCCCCEEEEEECCHHHHHHHHHHh--CCCEECCeEEEEEE
Confidence 356789999996 699999999999999 9999999888899999999999999999999 67889999999998
Q ss_pred cCc
Q psy5142 352 VTG 354 (410)
Q Consensus 352 l~g 354 (410)
...
T Consensus 108 a~~ 110 (121)
T 2bz2_A 108 ARK 110 (121)
T ss_dssp CCS
T ss_pred eCC
Confidence 763
No 342
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.04 E-value=1.6e-10 Score=91.03 Aligned_cols=74 Identities=16% Similarity=0.205 Sum_probs=59.7
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC------CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEE
Q psy5142 276 ALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG------EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSI 349 (410)
Q Consensus 276 ~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v 349 (410)
..|||.|||+++++++|+++|++||. ..|..|.+..+ .++|||.|.+.++|++|++.| ++..++|+.|.|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~--~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l--~g~~~~gr~i~V 77 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGV--NDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLL--PKRELHGQNPVV 77 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTC--CCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHG--GGSCSSSCCCEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCC--CceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHc--CCCeeCCEEEEE
Confidence 46899999999999999999999992 14666666543 236999999999999999999 678899999999
Q ss_pred EecC
Q psy5142 350 EVVT 353 (410)
Q Consensus 350 ~~l~ 353 (410)
....
T Consensus 78 ~~~~ 81 (90)
T 3p5t_L 78 TPSN 81 (90)
T ss_dssp CCC-
T ss_pred EECC
Confidence 8765
No 343
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.04 E-value=2.7e-10 Score=97.64 Aligned_cols=77 Identities=13% Similarity=0.207 Sum_probs=65.0
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeE--------EEee---CCCceEEEEeCChhHHHHHHHHhcCCCe
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVF--------IEFN---VGEPTAFVRYKKENNAEAVLKALGSKEI 340 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~--------V~~~---~g~~~afV~F~~~e~A~~Al~~l~~~~~ 340 (410)
..+.+.|||.|||+.+++++|+++|++|| .|.. |.+. ...++|||.|.+.++|.+|+..| ++.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G----~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~l--ng~ 115 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYV----DFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEA--NGY 115 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGC----CTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHH--TTB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhC----CcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHh--CCC
Confidence 35668999999999999999999999999 6644 2222 23457999999999999999999 789
Q ss_pred EEcCeEEEEEecCc
Q psy5142 341 VIKDVKVSIEVVTG 354 (410)
Q Consensus 341 ~i~g~~v~v~~l~g 354 (410)
.++|+.|.|.....
T Consensus 116 ~~~g~~l~V~~a~~ 129 (143)
T 3egn_A 116 VLFGKPMVVQFARS 129 (143)
T ss_dssp EETTEECEEEECCC
T ss_pred EeCCcEEEEEECCC
Confidence 99999999998753
No 344
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=4.1e-10 Score=94.43 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=62.9
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCe----eEEEeeCC-----CceEEEEeCChhHHHHHHHHhcCCCeEEc
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQEI----VFIEFNVG-----EPTAFVRYKKENNAEAVLKALGSKEIVIK 343 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V----~~V~~~~g-----~~~afV~F~~~e~A~~Al~~l~~~~~~i~ 343 (410)
...++|||.|||+++++++|+++|++|| .| ..|.+..+ .++|||+|.+.++|++||.. ++..++
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g----~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~---~~~~l~ 93 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHC----PITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK---HKDLLG 93 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTS----CCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT---TTEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhC----CccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh---CCCeeC
Confidence 4567999999999999999999999999 53 45655532 24699999999999999985 468899
Q ss_pred CeEEEEEecCch
Q psy5142 344 DVKVSIEVVTGE 355 (410)
Q Consensus 344 g~~v~v~~l~g~ 355 (410)
|+.|.|...+.+
T Consensus 94 gR~i~V~~a~~~ 105 (123)
T 2dha_A 94 KRYIELFRSTAA 105 (123)
T ss_dssp SCEECCEEECHH
T ss_pred CeEEEEEECCHH
Confidence 999999887643
No 345
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.02 E-value=1.8e-10 Score=92.66 Aligned_cols=76 Identities=12% Similarity=0.222 Sum_probs=63.2
Q ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC-------ceEEEEeCChhHHHHHHHHhcCCCeEEc
Q psy5142 271 ELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE-------PTAFVRYKKENNAEAVLKALGSKEIVIK 343 (410)
Q Consensus 271 ~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~-------~~afV~F~~~e~A~~Al~~l~~~~~~i~ 343 (410)
.....+.|||.|||.++++++|+++|++|| |..|.+..+. ++|||+|.+.++|++|+ .| ++..++
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-----i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l--~g~~~~ 86 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-----ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SL--NEESLG 86 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-----EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HT--TTCCBT
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-----CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hc--CCCEEC
Confidence 456678999999999999999999999998 7788887543 47999999999999999 88 678899
Q ss_pred CeEEEEEecCc
Q psy5142 344 DVKVSIEVVTG 354 (410)
Q Consensus 344 g~~v~v~~l~g 354 (410)
|+.|.|.....
T Consensus 87 g~~l~V~~a~~ 97 (100)
T 2j76_E 87 NRRIRVDVADQ 97 (100)
T ss_dssp TBCCCCEECCC
T ss_pred CeEEEEEeccC
Confidence 99999887653
No 346
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.01 E-value=2.7e-10 Score=91.51 Aligned_cols=74 Identities=12% Similarity=0.179 Sum_probs=62.4
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeE-----EEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEE
Q psy5142 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVF-----IEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKV 347 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~-----V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v 347 (410)
...+.|||.|||+++++++|+++|++|| .|.. .......++|||+|.+.++|++|++ | ++..++|+.|
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G----~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l--~g~~~~g~~l 87 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELF----AKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-L--TGLKVFGNEI 87 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHH----HHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-G--GGCCBTTBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhC----CcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-c--CCcEECCcEE
Confidence 4578999999999999999999999999 5533 1223345789999999999999998 8 6788999999
Q ss_pred EEEecC
Q psy5142 348 SIEVVT 353 (410)
Q Consensus 348 ~v~~l~ 353 (410)
.|....
T Consensus 88 ~V~~a~ 93 (101)
T 1fj7_A 88 KLEKPK 93 (101)
T ss_dssp EEECCS
T ss_pred EEEEcC
Confidence 998765
No 347
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.01 E-value=4.7e-10 Score=90.27 Aligned_cols=72 Identities=10% Similarity=0.219 Sum_probs=63.1
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCC-----ceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEE
Q psy5142 274 TGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGE-----PTAFVRYKKENNAEAVLKALGSKEIVIKDVKVS 348 (410)
Q Consensus 274 ~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~-----~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~ 348 (410)
..+.|||.|||+++++++|+++|++|| .|..|.+..+. ++|||.|.+.++|++|+. ++..++|+.|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G----~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~----~~~~~~g~~l~ 79 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYG----SVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE----SQINFHGKKLK 79 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGS----CEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT----CCCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCC----CeEEEEEEECCCCCccceEEEEECCHHHHHHHHh----CCCeECCEEEE
Confidence 457999999999999999999999999 99999988643 569999999999999998 46889999988
Q ss_pred EEecC
Q psy5142 349 IEVVT 353 (410)
Q Consensus 349 v~~l~ 353 (410)
|....
T Consensus 80 v~~a~ 84 (102)
T 2xs2_A 80 LGPAI 84 (102)
T ss_dssp EEEEE
T ss_pred EEECC
Confidence 76553
No 348
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.00 E-value=1.2e-09 Score=95.83 Aligned_cols=73 Identities=14% Similarity=0.179 Sum_probs=63.6
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC--CceEEEEeCChhHHHHHHHHhcCCCeEEcC--eEEEEE
Q psy5142 275 GALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG--EPTAFVRYKKENNAEAVLKALGSKEIVIKD--VKVSIE 350 (410)
Q Consensus 275 g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g--~~~afV~F~~~e~A~~Al~~l~~~~~~i~g--~~v~v~ 350 (410)
-+.|+|.||++.+++++|+++|++|| .|..|.+... ..+|||+|.+.++|++|++.| ++..|.| +.|+|.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG----~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~L--nG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFG----TVLKIITFTKNNQFQALLQYADPVSAQHAKLSL--DGQNIYNACCTLRID 119 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHS----CEEEEEEEESSSCEEEEEEESCHHHHHHHHHHS--TTBCSSSSCSCEEEE
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcC----CEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHh--CCCEecCCCcEEEEE
Confidence 35688999999999999999999999 9999988644 347999999999999999999 6777854 899998
Q ss_pred ecC
Q psy5142 351 VVT 353 (410)
Q Consensus 351 ~l~ 353 (410)
...
T Consensus 120 ~Ak 122 (164)
T 1sjr_A 120 FSK 122 (164)
T ss_dssp ECS
T ss_pred Eec
Confidence 765
No 349
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=4.8e-10 Score=87.75 Aligned_cols=72 Identities=14% Similarity=0.296 Sum_probs=61.6
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC-CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEec
Q psy5142 274 TGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG-EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVV 352 (410)
Q Consensus 274 ~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g-~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l 352 (410)
+.+.|||.|||+++++++|+++|++|| .|..|.+... .++|||.|.+.++|++| +...+.++|..|.|...
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G----~i~~v~i~~~~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYG----DVMDVFIPKPFRAFAFVTFADDQIAQSL----CGEDLIIKGISVHISNA 75 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTS----CCCEEECCSSCCSCCEEECSCHHHHHHT----TTCEEEETTEEEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcC----CeeEEEEecCCCCEEEEEECCHHHHHHH----hcCCceeCCEEEEEEec
Confidence 457899999999999999999999999 9999998764 67899999999998754 33467889999998865
Q ss_pred C
Q psy5142 353 T 353 (410)
Q Consensus 353 ~ 353 (410)
.
T Consensus 76 ~ 76 (88)
T 1wf0_A 76 E 76 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 350
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.98 E-value=5.9e-10 Score=93.83 Aligned_cols=77 Identities=16% Similarity=0.213 Sum_probs=63.7
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCee-EEEeeCC-----CceEEEEeCChhHHHHHHHHhcCCCeEEcCe
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIV-FIEFNVG-----EPTAFVRYKKENNAEAVLKALGSKEIVIKDV 345 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~-~V~~~~g-----~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~ 345 (410)
....++|||.|||+++++++|+++|++|+ -+. .|.+..+ .++|||+|.++++|++||+.. +..|+|+
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~~----i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~---~~~l~gR 111 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGLE----IVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH---KERIGHR 111 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTSC----EEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTT---TCCBTTB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCC----ceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHC---CCEECCE
Confidence 34567899999999999999999999998 332 6777643 457999999999999999853 4889999
Q ss_pred EEEEEecCch
Q psy5142 346 KVSIEVVTGE 355 (410)
Q Consensus 346 ~v~v~~l~g~ 355 (410)
.|.|.....+
T Consensus 112 ~I~V~~a~~~ 121 (126)
T 2hgm_A 112 YIEVFKSSQE 121 (126)
T ss_dssp CCCCEEECHH
T ss_pred EEEEEECCHH
Confidence 9999887633
No 351
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.98 E-value=5.5e-10 Score=104.08 Aligned_cols=62 Identities=24% Similarity=0.186 Sum_probs=57.2
Q ss_pred ccceeeEeecCCCCC---------CHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHH
Q psy5142 117 LIAQSLYVKYIPVDA---------TLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLN 187 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~---------t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~ 187 (410)
...+||||+|||.++ |+++|+++|++| |+|.+|+|+ ..+|||||+|.+.++|+.|++
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f----G~I~~v~v~----------~~kG~AFV~F~~~~~Ae~A~~ 197 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL----GDIDRIRYV----------ESKNCGFVKFKYQANAEFAKE 197 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT----SCEEEEEEE----------GGGTEEEEEESSHHHHHHHHH
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHcc----CCEEEEEEE----------CCCCEEEEEeCCHHHHHHHHH
Confidence 567999999999998 799999999999 999999997 358999999999999999999
Q ss_pred hcCCC
Q psy5142 188 ENKDK 192 (410)
Q Consensus 188 ~~~g~ 192 (410)
.++|.
T Consensus 198 am~g~ 202 (240)
T 3u1l_A 198 AMSNQ 202 (240)
T ss_dssp HHTTC
T ss_pred HhCCC
Confidence 99973
No 352
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.98 E-value=1.6e-10 Score=93.99 Aligned_cols=62 Identities=15% Similarity=0.292 Sum_probs=52.2
Q ss_pred eecCCCCCCHHHHHHHH------------hhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 124 VKYIPVDATLDDIKDFF------------KKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 124 V~~lp~~~t~~~L~~~F------------~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
+.|||+.+|.++|+++| ++| |.|.+|.|+++..+ .++|||||+|.++++|++|+..++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~----G~V~~v~i~~~~~~-----~~~G~~fV~f~~~~~A~~A~~~lng 90 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKY----GEVEEMNVCDNLGD-----HLVGNVYVKFRREEDAEKAVIDLNN 90 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----CCEEEEEECCSSSS-----SSEEEEEEEESCHHHHHHHHHHHTT
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccC----CceEEEEEEeCCCC-----CccEEEEEEECCHHHHHHHHHHHCC
Confidence 56677777777776666 999 99999999987664 7899999999999999999999997
Q ss_pred CCccc
Q psy5142 192 KNLKF 196 (410)
Q Consensus 192 ~~~~~ 196 (410)
..|
T Consensus 91 --~~~ 93 (104)
T 1jmt_A 91 --RWF 93 (104)
T ss_dssp --CEE
T ss_pred --CEE
Confidence 455
No 353
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.98 E-value=2.4e-09 Score=90.43 Aligned_cols=73 Identities=14% Similarity=0.182 Sum_probs=62.6
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC-Cce-EEEEeCChhHHHHHHHHhcCCCeEEcC--eEEEEE
Q psy5142 275 GALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG-EPT-AFVRYKKENNAEAVLKALGSKEIVIKD--VKVSIE 350 (410)
Q Consensus 275 g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g-~~~-afV~F~~~e~A~~Al~~l~~~~~~i~g--~~v~v~ 350 (410)
-..|+|.||++.+|+++|+++|++|| .|..|.+... .+. |||+|.+.++|++|++.| +|..|.| +.|+|.
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG----~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~L--nG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFG----TVLKIITFTKNNQFQALLQYADPVSAQHAKLSL--DGQNIYNACCTLRID 101 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSS----CEEEEEEEEETTEEEEEEEESCHHHHHHHHHHH--TTCEEETTEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcC----CEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHc--CCCeecCCCcEEEEE
Confidence 35677999999999999999999999 9999877643 345 999999999999999999 6788877 778887
Q ss_pred ecC
Q psy5142 351 VVT 353 (410)
Q Consensus 351 ~l~ 353 (410)
...
T Consensus 102 ~ak 104 (130)
T 3zzy_A 102 FSK 104 (130)
T ss_dssp ECS
T ss_pred ecC
Confidence 653
No 354
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.98 E-value=1.7e-09 Score=102.07 Aligned_cols=76 Identities=17% Similarity=0.260 Sum_probs=69.7
Q ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEE
Q psy5142 271 ELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIE 350 (410)
Q Consensus 271 ~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~ 350 (410)
.....+.|||.|||+++|+++|+++|++|| .|..|.+.+..++|||.|.+.++|.+|+..+ ++..++|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G----~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l--~g~~i~g~~l~v~ 91 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYG----EPSEVFINRDRGFGFIRLESRTLAEIAKAEL--DGTILKSRPLRIR 91 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGC----CCSEEEEETTTTEEEEECSSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcC----CEEEEEEeCCCcEEEEEECCHHHHHHHHHHc--CCcEECCceeEee
Confidence 456678999999999999999999999999 9999999999999999999999999999999 6788999988887
Q ss_pred ec
Q psy5142 351 VV 352 (410)
Q Consensus 351 ~l 352 (410)
..
T Consensus 92 ~a 93 (261)
T 3sde_A 92 FA 93 (261)
T ss_dssp EC
T ss_pred ec
Confidence 54
No 355
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.97 E-value=1.8e-09 Score=99.85 Aligned_cols=79 Identities=13% Similarity=0.191 Sum_probs=71.0
Q ss_pred ccCCCCCeEEEEeCCCC-CCCHHHHHHHHHhcCCCCCCeeEEEeeCCC-ceEEEEeCChhHHHHHHHHhcCCCeEEcCeE
Q psy5142 269 VLELPTGALLKISDIKE-PVSREDIREVLEKVQTDDQEIVFIEFNVGE-PTAFVRYKKENNAEAVLKALGSKEIVIKDVK 346 (410)
Q Consensus 269 ~~~~~~g~~l~v~nL~~-~~t~edLk~~F~~~G~~~~~V~~V~~~~g~-~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~ 346 (410)
....+++++|||.|||+ ++++++|+++|++|| .|..|.+..+. ++|||+|.+.++|++|++.| ++..++|+.
T Consensus 28 ~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G----~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l--~g~~~~g~~ 101 (229)
T 2adc_A 28 GLAGAGNSVLLVSNLNPERVTPQSLFILFGVYG----DVQRVKILFNKKENALVQMADGNQAQLAMSHL--NGHKLHGKP 101 (229)
T ss_dssp GGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHT----CEEEEEECCTTSCCEEEEESCHHHHHHHHHHH--TTCBCSSSB
T ss_pred CCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCC----CeEEEEEEECCCCEEEEEECCHHHHHHHHHHh--CCCeECCeE
Confidence 34456788999999999 999999999999999 99999998764 78999999999999999999 678899999
Q ss_pred EEEEecC
Q psy5142 347 VSIEVVT 353 (410)
Q Consensus 347 v~v~~l~ 353 (410)
|.|....
T Consensus 102 l~v~~a~ 108 (229)
T 2adc_A 102 IRITLSK 108 (229)
T ss_dssp CEEECCS
T ss_pred EEEEEec
Confidence 9998765
No 356
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.96 E-value=9.7e-10 Score=104.43 Aligned_cols=65 Identities=15% Similarity=0.194 Sum_probs=58.3
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
...++|||+|||.++|+++|+++|++| |.|.+|+|.+ ..+|+|||+|.+.++|.+|+..++| ..+
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~----G~i~~v~~~~---------~~~g~afV~f~~~~~A~~A~~~l~g--~~~ 269 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQF----PGFKEVRLVP---------GRHDIAFVEFDNEVQAGAARDALQG--FKI 269 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhc----CCeEEEEEec---------CCCcEEEEEeCCHHHHHHHHHHcCC--cEe
Confidence 356899999999999999999999999 9999999984 2368999999999999999999996 445
No 357
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.94 E-value=1.3e-09 Score=101.69 Aligned_cols=78 Identities=18% Similarity=0.281 Sum_probs=69.1
Q ss_pred CCCCeEEEEeCCCCCC---------CHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEE
Q psy5142 272 LPTGALLKISDIKEPV---------SREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVI 342 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~---------t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i 342 (410)
.....+|||.||+..+ ++++|+++|++|| .|..|.+....++|||+|.+.++|+.|+++|+ +..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG----~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~--g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLG----DIDRIRYVESKNCGFVKFKYQANAEFAKEAMS--NQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTS----CEEEEEEEGGGTEEEEEESSHHHHHHHHHHHT--TCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccC----CEEEEEEECCCCEEEEEeCCHHHHHHHHHHhC--CCEE
Confidence 4567899999999998 7999999999999 99999999999999999999999999999995 4555
Q ss_pred ------------cCeEEEEEecCch
Q psy5142 343 ------------KDVKVSIEVVTGE 355 (410)
Q Consensus 343 ------------~g~~v~v~~l~g~ 355 (410)
.|+.|.|+.+..+
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 8999999987643
No 358
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.94 E-value=1.1e-09 Score=89.17 Aligned_cols=70 Identities=21% Similarity=0.289 Sum_probs=56.9
Q ss_pred ceeeEeecC--CCCC--------CHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHh
Q psy5142 119 AQSLYVKYI--PVDA--------TLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNE 188 (410)
Q Consensus 119 ~rtv~V~~l--p~~~--------t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~ 188 (410)
.+.|.+.|+ |.+. +.++|++.|++| |.|.+|.|+++..+. ...++|+|||+|.++++|.+|+..
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~----G~V~~v~i~~~~~~~--~~~~~G~~fV~f~~~~~A~~Ai~~ 78 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY----GLVKSIEIPRPVDGV--EVPGCGKIFVEFTSVFDCQKAMQG 78 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTT----SCEEEEECCCCBTTB--CCTTTTEEEEEESSHHHHHHHHHH
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHcc----CCEEEEEEeccCCCC--CcCCcEEEEEEECCHHHHHHHHHH
Confidence 567888887 3333 347999999999 999999999887541 015799999999999999999999
Q ss_pred cCCCCccc
Q psy5142 189 NKDKNLKF 196 (410)
Q Consensus 189 ~~g~~~~~ 196 (410)
++| ..|
T Consensus 79 lnG--~~f 84 (105)
T 3v4m_A 79 LTG--RKF 84 (105)
T ss_dssp HTT--CEE
T ss_pred hCC--CEe
Confidence 997 456
No 359
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=2e-09 Score=88.35 Aligned_cols=65 Identities=15% Similarity=0.165 Sum_probs=54.0
Q ss_pred cceeeEeecCCCCC-----------CHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHH
Q psy5142 118 IAQSLYVKYIPVDA-----------TLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFL 186 (410)
Q Consensus 118 ~~rtv~V~~lp~~~-----------t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al 186 (410)
..++|+|.||.... ++++|+++|++| |.|..|.|+ + . .++|||||+|.+.++|++|+
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~----G~v~~v~i~-~--~-----~~~G~afV~f~~~~~A~~Ai 81 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF----GQIRKLLLF-D--R-----HPDGVASVSFRDPEEADYCI 81 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT----SCCSEEEEE-T--T-----CTTCEEEEECSCHHHHHHHH
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc----CCEeEEEEe-c--C-----CCCEEEEEEECCHHHHHHHH
Confidence 36899999994433 258999999999 999999773 2 2 46999999999999999999
Q ss_pred HhcCCCCccc
Q psy5142 187 NENKDKNLKF 196 (410)
Q Consensus 187 ~~~~g~~~~~ 196 (410)
..++| ..+
T Consensus 82 ~~lng--~~~ 89 (112)
T 2dit_A 82 QTLDG--RWF 89 (112)
T ss_dssp HHSTT--CEE
T ss_pred HHcCC--CEE
Confidence 99996 455
No 360
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.91 E-value=6e-09 Score=84.80 Aligned_cols=75 Identities=9% Similarity=0.008 Sum_probs=63.4
Q ss_pred CCCeEEEEeCCCC-----CCCHHHHHHHHHhcCCCCCCeeEEEeeCC-------CceEEEEeCChhHHHHHHHHhcCCCe
Q psy5142 273 PTGALLKISDIKE-----PVSREDIREVLEKVQTDDQEIVFIEFNVG-------EPTAFVRYKKENNAEAVLKALGSKEI 340 (410)
Q Consensus 273 ~~g~~l~v~nL~~-----~~t~edLk~~F~~~G~~~~~V~~V~~~~g-------~~~afV~F~~~e~A~~Al~~l~~~~~ 340 (410)
.+..+|+|.|+.. +.++++|++.|++|| .|..|.+... .+.|||+|.++++|.+|+..| ++.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G----~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~l--nG~ 79 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYG----KVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDL--NGR 79 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGS----CEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHH--TTC
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcC----CEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHH--CCC
Confidence 3456899999742 237899999999999 9999988753 357999999999999999999 788
Q ss_pred EEcCeEEEEEecC
Q psy5142 341 VIKDVKVSIEVVT 353 (410)
Q Consensus 341 ~i~g~~v~v~~l~ 353 (410)
.++|+.|.+....
T Consensus 80 ~~~Gr~i~v~~a~ 92 (105)
T 2pe8_A 80 YFGGRVVKACFYN 92 (105)
T ss_dssp EETTEECEEEECC
T ss_pred EECCcEEEEEEcC
Confidence 9999999999986
No 361
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=2.9e-09 Score=87.70 Aligned_cols=68 Identities=10% Similarity=0.228 Sum_probs=56.1
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC---------CceEEEEeCChhHHHHHHHHhcCCCeEEcC
Q psy5142 274 TGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG---------EPTAFVRYKKENNAEAVLKALGSKEIVIKD 344 (410)
Q Consensus 274 ~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g---------~~~afV~F~~~e~A~~Al~~l~~~~~~i~g 344 (410)
..+.|||.|||+++++++|+++|++|| .|. +.+... .++|||+|.++++|++|++.| ..++|
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G----~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~----~~~~G 77 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFG----PLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC----LEEDG 77 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTC----CCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS----EEETT
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcC----CEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh----hhcCC
Confidence 457899999999999999999999999 888 666532 457999999999999999998 23566
Q ss_pred eEEEEE
Q psy5142 345 VKVSIE 350 (410)
Q Consensus 345 ~~v~v~ 350 (410)
+.+.+.
T Consensus 78 ~~~~~~ 83 (114)
T 2dnl_A 78 KLYLCV 83 (114)
T ss_dssp EEEEEE
T ss_pred cEEEec
Confidence 655543
No 362
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=4.7e-09 Score=84.65 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcC
Q psy5142 129 VDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENK 190 (410)
Q Consensus 129 ~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~ 190 (410)
.++|+++|+++|++| |.|.+|.|++ .++|||||+|.+.++|++|++..+
T Consensus 27 ~~~te~~L~~~F~~~----G~V~~v~i~~---------~~rGfaFVeF~~~~~A~~Ai~~~~ 75 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKY----GEVLNLVLSS---------KKPGTAVVEFATVKAAELAVQNEV 75 (100)
T ss_dssp CSCCHHHHHHHHHTT----SCEEEEEEES---------SSSSEEEEEESCHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHhc----CCEEEEEEcc---------CCCCEEEEEECCHHHHHHHHHhcC
Confidence 468999999999999 9999999982 679999999999999999999855
No 363
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.89 E-value=2.6e-09 Score=95.90 Aligned_cols=74 Identities=12% Similarity=0.218 Sum_probs=67.6
Q ss_pred CeEEEEeCCCC-CCCHHHHHHHHHhcCCCCCCeeEEEeeCCC-ceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEec
Q psy5142 275 GALLKISDIKE-PVSREDIREVLEKVQTDDQEIVFIEFNVGE-PTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVV 352 (410)
Q Consensus 275 g~~l~v~nL~~-~~t~edLk~~F~~~G~~~~~V~~V~~~~g~-~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l 352 (410)
+++|+|.|||+ .+++++|+++|++|| .|..|.+..+. ++|||+|.+.++|++|+..| ++..++|+.|.|...
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G----~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l--~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYG----DVQRVKILFNKKENALVQMADGNQAQLAMSHL--NGHKLHGKPIRITLS 76 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTC----CCSEEECSTTCSSCCEEECTTTHHHHHHHHHH--TTCCCSSCCCEEEEC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcC----CEEEEEEEeCCCCEEEEEECCHHHHHHHHHHh--CCCeecCeEEEEEEe
Confidence 47899999999 999999999999999 99999998764 68999999999999999999 678899999999877
Q ss_pred Cc
Q psy5142 353 TG 354 (410)
Q Consensus 353 ~g 354 (410)
..
T Consensus 77 ~~ 78 (198)
T 1qm9_A 77 KH 78 (198)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 364
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.87 E-value=2.8e-09 Score=104.48 Aligned_cols=62 Identities=16% Similarity=0.185 Sum_probs=55.9
Q ss_pred ccceeeEeec--CCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCC
Q psy5142 117 LIAQSLYVKY--IPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDK 192 (410)
Q Consensus 117 ~~~rtv~V~~--lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~ 192 (410)
...++|||+| |++.+|+++|+++|++| |.|.+|.|++ .||||||+|.+.++|++|++.++|+
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~----G~V~~v~~~~----------~kgfaFV~f~~~~~A~~Ai~~lnG~ 79 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKC----GLVDALLMPP----------NKPYSFARYRTTEESKRAYVTLNGK 79 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTT----SCEEEEECCT----------TCSEEEEEESSHHHHHHHHHHTTTC
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhc----CCeEEEEEeC----------CCCEEEEEECCHHHHHHHHHHhCCC
Confidence 3457999999 57899999999999999 9999998863 4799999999999999999999984
No 365
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.86 E-value=3.8e-09 Score=95.45 Aligned_cols=72 Identities=17% Similarity=0.223 Sum_probs=63.8
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCC-----CceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEE
Q psy5142 275 GALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG-----EPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSI 349 (410)
Q Consensus 275 g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g-----~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v 349 (410)
.++|||.|||++++.++|+++|++|| .|..|.+.+. .++|||+|.+.++|++|+..+ +..++|+.|.|
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G----~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~---~~~~~Gr~l~V 181 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKG----QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP---GQKYKETDLLI 181 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSC----CEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT---TCEETTEECEE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCC----CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC---CCeECCEEEEE
Confidence 46899999999999999999999999 9999988853 346999999999999999876 35899999999
Q ss_pred EecC
Q psy5142 350 EVVT 353 (410)
Q Consensus 350 ~~l~ 353 (410)
....
T Consensus 182 ~~~~ 185 (193)
T 2voo_A 182 LFKD 185 (193)
T ss_dssp EETT
T ss_pred EEhH
Confidence 8764
No 366
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.85 E-value=3.9e-09 Score=87.77 Aligned_cols=73 Identities=12% Similarity=0.146 Sum_probs=57.7
Q ss_pred cceeeEeecCC--C---CCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCC
Q psy5142 118 IAQSLYVKYIP--V---DATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDK 192 (410)
Q Consensus 118 ~~rtv~V~~lp--~---~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~ 192 (410)
..++|++.|+- . +-.+++|++.|++| |.|.+|.|+++..+......++|++||+|.+.++|.+|+..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~----G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnG- 93 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKF----GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNG- 93 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTT----SCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTT-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhcc----CCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCC-
Confidence 46788888883 2 23468999999999 99999999987642100115789999999999999999999997
Q ss_pred Cccc
Q psy5142 193 NLKF 196 (410)
Q Consensus 193 ~~~~ 196 (410)
..|
T Consensus 94 -r~f 96 (118)
T 3ue2_A 94 -RWF 96 (118)
T ss_dssp -CEE
T ss_pred -CEE
Confidence 456
No 367
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=2.7e-08 Score=81.51 Aligned_cols=76 Identities=17% Similarity=0.248 Sum_probs=63.2
Q ss_pred CCCeEEEEeCCCCCCC-----------HHHHHHHHHhcCCCCCCeeEEEeeC--CCceEEEEeCChhHHHHHHHHhcCCC
Q psy5142 273 PTGALLKISDIKEPVS-----------REDIREVLEKVQTDDQEIVFIEFNV--GEPTAFVRYKKENNAEAVLKALGSKE 339 (410)
Q Consensus 273 ~~g~~l~v~nL~~~~t-----------~edLk~~F~~~G~~~~~V~~V~~~~--g~~~afV~F~~~e~A~~Al~~l~~~~ 339 (410)
.+..+|+|.||..... +++|+++|++|| .|..|.+.. ..++|||+|.+.++|++|+..| ++
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G----~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~l--ng 86 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFG----QIRKLLLFDRHPDGVASVSFRDPEEADYCIQTL--DG 86 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTS----CCSEEEEETTCTTCEEEEECSCHHHHHHHHHHS--TT
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccC----CEeEEEEecCCCCEEEEEEECCHHHHHHHHHHc--CC
Confidence 4567899999843322 589999999999 998886653 2468999999999999999999 67
Q ss_pred eEEcCeEEEEEecCc
Q psy5142 340 IVIKDVKVSIEVVTG 354 (410)
Q Consensus 340 ~~i~g~~v~v~~l~g 354 (410)
..++|+.|.|....+
T Consensus 87 ~~~~gr~l~v~~a~~ 101 (112)
T 2dit_A 87 RWFGGRQITAQAWDG 101 (112)
T ss_dssp CEETTEECEEEECCS
T ss_pred CEECCcEEEEEEeCC
Confidence 899999999998763
No 368
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.79 E-value=4.9e-08 Score=81.66 Aligned_cols=73 Identities=15% Similarity=0.165 Sum_probs=59.4
Q ss_pred eEEEEeCC----CCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCc------eEEEEeCC----hhH----HHHHHHHhcC
Q psy5142 276 ALLKISDI----KEPVSREDIREVLEKVQTDDQEIVFIEFNVGEP------TAFVRYKK----ENN----AEAVLKALGS 337 (410)
Q Consensus 276 ~~l~v~nL----~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~------~afV~F~~----~e~----A~~Al~~l~~ 337 (410)
+.|+|.|| |+.+++++|+++|++|| +|..+.+..+.. +|||+|.+ ++. |.+|+.....
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fG----eV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~l 78 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYG----EISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHES 78 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTS----CCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcC----CeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhh
Confidence 47899999 99999999999999999 999998886543 59999996 433 6777773223
Q ss_pred CCeEEcCeEEEEEec
Q psy5142 338 KEIVIKDVKVSIEVV 352 (410)
Q Consensus 338 ~~~~i~g~~v~v~~l 352 (410)
++..|+|+.|.|.+=
T Consensus 79 ng~~I~Gr~irV~ln 93 (136)
T 2j8a_A 79 SGCFIMGFKFEVILN 93 (136)
T ss_dssp TCEEETTEEEEEEEC
T ss_pred cCCeecCcEEEEEEC
Confidence 789999999999964
No 369
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.79 E-value=2.1e-08 Score=81.55 Aligned_cols=74 Identities=16% Similarity=0.181 Sum_probs=62.3
Q ss_pred CCeEEEEeCC--CCCCC--------HHHHHHHHHhcCCCCCCeeEEEeeCC--------CceEEEEeCChhHHHHHHHHh
Q psy5142 274 TGALLKISDI--KEPVS--------REDIREVLEKVQTDDQEIVFIEFNVG--------EPTAFVRYKKENNAEAVLKAL 335 (410)
Q Consensus 274 ~g~~l~v~nL--~~~~t--------~edLk~~F~~~G~~~~~V~~V~~~~g--------~~~afV~F~~~e~A~~Al~~l 335 (410)
+-.+|.+.|+ |.+.. .++|++.|++|| .|..|.+++. .+.|||+|.++++|.+|+..|
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G----~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~l 79 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYG----LVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGL 79 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTS----CEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccC----CEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHh
Confidence 3457889995 43443 379999999999 9999998753 467999999999999999999
Q ss_pred cCCCeEEcCeEEEEEecC
Q psy5142 336 GSKEIVIKDVKVSIEVVT 353 (410)
Q Consensus 336 ~~~~~~i~g~~v~v~~l~ 353 (410)
++..++|+.|.+....
T Consensus 80 --nG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 80 --TGRKFANRVVVTKYCD 95 (105)
T ss_dssp --TTCEETTEECEEEEEC
T ss_pred --CCCEeCCCEEEEEEeC
Confidence 7899999999999876
No 370
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.76 E-value=4.5e-08 Score=81.37 Aligned_cols=65 Identities=17% Similarity=0.123 Sum_probs=55.7
Q ss_pred cceeeEeecCCCC-CCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecC-HHHHHHHHHhcCCCCcc
Q psy5142 118 IAQSLYVKYIPVD-ATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDN-KENAEKFLNENKDKNLK 195 (410)
Q Consensus 118 ~~rtv~V~~lp~~-~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~-~e~A~~Al~~~~g~~~~ 195 (410)
.-+.|||+|||.+ ++.++|+++|++| |.|.+|.+.++.. .|||+|.+ +++|..|+..++.....
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~----G~V~~Vd~~~g~~----------tgfVrf~~~~~~A~~av~~ln~~~~~ 82 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNH----GEIKWIDFVRGAK----------EGIILFKEKAKEALGKAKDANNGNLQ 82 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSS----CCEEEEECCTTCS----------EEEEEESSCHHHHHHHHHHTTTSCBC
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhc----CCEEEEEEecCCC----------EEEEEECCChHHHHHHHHHhhcCCcE
Confidence 4678999999999 9999999999999 9999999987543 49999999 89999999988632344
Q ss_pred c
Q psy5142 196 F 196 (410)
Q Consensus 196 ~ 196 (410)
+
T Consensus 83 i 83 (121)
T 1owx_A 83 L 83 (121)
T ss_dssp T
T ss_pred E
Confidence 4
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.69 E-value=3.8e-08 Score=96.37 Aligned_cols=63 Identities=22% Similarity=0.331 Sum_probs=57.3
Q ss_pred CCCCeEEEEeC--CCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCC
Q psy5142 272 LPTGALLKISD--IKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSK 338 (410)
Q Consensus 272 ~~~g~~l~v~n--L~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~ 338 (410)
..+..+|||.| |+..+|+++|+++|++|| +|..|.+.+++++|||+|.+.++|++|++.||+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G----~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~ 79 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCG----LVDALLMPPNKPYSFARYRTTEESKRAYVTLNGK 79 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTS----CEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTC
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcC----CeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 45567899998 678999999999999999 9999999999999999999999999999999543
No 372
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.66 E-value=8.5e-08 Score=75.17 Aligned_cols=75 Identities=15% Similarity=0.244 Sum_probs=61.3
Q ss_pred CCCCeEEEEeCCCC----CCCH----HHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEc
Q psy5142 272 LPTGALLKISDIKE----PVSR----EDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIK 343 (410)
Q Consensus 272 ~~~g~~l~v~nL~~----~~t~----edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~ 343 (410)
.|++.+|.|.-++. ..-. .+|.+.|++|| +|..|++..+. +||.|.+.++|.+|+. | ++..++
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G----~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-m--nG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFG----EVILIRFVEDK--MWVTFLEGSSALNVLS-L--NGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTC----CEEEEEECSSS--EEEEESSHHHHHHGGG-G--TTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCC----CeEEEEEecCC--EEEEECChHHHHHHHh-c--CCeEeC
Confidence 36666666665541 2223 78999999999 99999998855 9999999999999998 8 789999
Q ss_pred CeEEEEEecCch
Q psy5142 344 DVKVSIEVVTGE 355 (410)
Q Consensus 344 g~~v~v~~l~g~ 355 (410)
|+.|+|++.+.+
T Consensus 75 Gr~LkV~lkt~d 86 (91)
T 2dnr_A 75 NRTITIALKSPS 86 (91)
T ss_dssp TEEEEEEECCCS
T ss_pred CeEEEEEeCCCC
Confidence 999999998753
No 373
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.62 E-value=8.2e-08 Score=79.72 Aligned_cols=75 Identities=13% Similarity=0.195 Sum_probs=62.6
Q ss_pred CCeEEEEeCC--CCCC---CHHHHHHHHHhcCCCCCCeeEEEeeCCC----------ceEEEEeCChhHHHHHHHHhcCC
Q psy5142 274 TGALLKISDI--KEPV---SREDIREVLEKVQTDDQEIVFIEFNVGE----------PTAFVRYKKENNAEAVLKALGSK 338 (410)
Q Consensus 274 ~g~~l~v~nL--~~~~---t~edLk~~F~~~G~~~~~V~~V~~~~g~----------~~afV~F~~~e~A~~Al~~l~~~ 338 (410)
+..+|.+.|+ |.++ -++||++.|++|| .|..|.+++.. +.|||+|.++++|.+|+..| +
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G----~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~L--n 92 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFG----AVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQAL--N 92 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTS----CEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHH--T
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccC----CEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHH--C
Confidence 4568889995 3222 3699999999999 99988877532 46999999999999999999 7
Q ss_pred CeEEcCeEEEEEecCc
Q psy5142 339 EIVIKDVKVSIEVVTG 354 (410)
Q Consensus 339 ~~~i~g~~v~v~~l~g 354 (410)
+..++|+.|.+.....
T Consensus 93 Gr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 93 GRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp TCEETTEECEEEEECH
T ss_pred CCEECCcEEEEEEcCh
Confidence 8899999999999873
No 374
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.60 E-value=2e-08 Score=81.52 Aligned_cols=66 Identities=18% Similarity=0.309 Sum_probs=54.8
Q ss_pred EeCCCCCCCHHHHHHHH------------HhcCCCCCCeeEEEeeCC-----CceEEEEeCChhHHHHHHHHhcCCCeEE
Q psy5142 280 ISDIKEPVSREDIREVL------------EKVQTDDQEIVFIEFNVG-----EPTAFVRYKKENNAEAVLKALGSKEIVI 342 (410)
Q Consensus 280 v~nL~~~~t~edLk~~F------------~~~G~~~~~V~~V~~~~g-----~~~afV~F~~~e~A~~Al~~l~~~~~~i 342 (410)
+.|||..+++++|++.| ++|| .|..|.+.++ .+.|||.|.++++|++|+..| ++..+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G----~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~l--ng~~~ 93 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYG----EVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDL--NNRWF 93 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----CEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHH--TTCEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCC----ceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHH--CCCEE
Confidence 34566677777776666 9999 9999999865 357999999999999999999 67899
Q ss_pred cCeEEEEEe
Q psy5142 343 KDVKVSIEV 351 (410)
Q Consensus 343 ~g~~v~v~~ 351 (410)
+|+.|.|..
T Consensus 94 ~Gr~i~v~~ 102 (104)
T 1jmt_A 94 NGQPIHAEL 102 (104)
T ss_dssp TTEECCEEE
T ss_pred CCEEEEEEE
Confidence 999998875
No 375
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.58 E-value=8.6e-08 Score=79.09 Aligned_cols=64 Identities=16% Similarity=0.169 Sum_probs=51.9
Q ss_pred ceeeEeecCCC--C--------CCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHh
Q psy5142 119 AQSLYVKYIPV--D--------ATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNE 188 (410)
Q Consensus 119 ~rtv~V~~lp~--~--------~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~ 188 (410)
.+.|.+.|+=. + -..++|++.|++| |.|.+|.|.++ ..+|++||+|.+.++|.+|+..
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kf----G~V~~v~i~~~--------~~~G~~fV~f~~~e~A~~Ai~~ 74 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKH----GGVIHIYVDKN--------SAQGNVYVKCPSIAAAIAAVNA 74 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTT----TCCSEEEECTT--------CTTCCEEEECSSHHHHHHHHHH
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhcc----CCEEEEEEecC--------CCcEEEEEEECCHHHHHHHHHH
Confidence 46788887732 2 1246889999999 99999999764 2489999999999999999999
Q ss_pred cCCCCccc
Q psy5142 189 NKDKNLKF 196 (410)
Q Consensus 189 ~~g~~~~~ 196 (410)
++| ..|
T Consensus 75 lnG--~~f 80 (114)
T 3s6e_A 75 LHG--RWF 80 (114)
T ss_dssp HTT--CEE
T ss_pred hCC--CEE
Confidence 997 456
No 376
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=3e-07 Score=74.02 Aligned_cols=61 Identities=18% Similarity=0.210 Sum_probs=52.3
Q ss_pred CCCCHHHHHHHHHhcCCCCCCeeEEEee-CCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEecC
Q psy5142 285 EPVSREDIREVLEKVQTDDQEIVFIEFN-VGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVT 353 (410)
Q Consensus 285 ~~~t~edLk~~F~~~G~~~~~V~~V~~~-~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l~ 353 (410)
..+++++|+++|++|| .|..|.+. ...++|||+|.+.++|+.|+..+ .+ +.|+.|.|..+.
T Consensus 27 ~~~te~~L~~~F~~~G----~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~--~~--~~g~~l~V~~a~ 88 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYG----EVLNLVLSSKKPGTAVVEFATVKAAELAVQNE--VG--LVDNPLKISWLE 88 (100)
T ss_dssp CSCCHHHHHHHHHTTS----CEEEEEEESSSSSEEEEEESCHHHHHHHHHTC--CB--CSSSBCEEECSS
T ss_pred CCCCHHHHHHHHHhcC----CEEEEEEccCCCCEEEEEECCHHHHHHHHHhc--CC--CCCCeEEEEEcc
Confidence 5689999999999999 99999987 34578999999999999999986 33 568888888754
No 377
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.53 E-value=2.1e-07 Score=76.69 Aligned_cols=73 Identities=15% Similarity=0.207 Sum_probs=60.7
Q ss_pred CeEEEEeCC--CCCC--------CHHHHHHHHHhcCCCCCCeeEEEeeCC--CceEEEEeCChhHHHHHHHHhcCCCeEE
Q psy5142 275 GALLKISDI--KEPV--------SREDIREVLEKVQTDDQEIVFIEFNVG--EPTAFVRYKKENNAEAVLKALGSKEIVI 342 (410)
Q Consensus 275 g~~l~v~nL--~~~~--------t~edLk~~F~~~G~~~~~V~~V~~~~g--~~~afV~F~~~e~A~~Al~~l~~~~~~i 342 (410)
..+|.+.|+ +.+. -++||++.|++|| .|..|.+.+. .+.|||+|.+.++|.+|+..| +|..+
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG----~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~l--nG~~f 80 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHG----GVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNAL--HGRWF 80 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTT----CCSEEEECTTCTTCCEEEECSSHHHHHHHHHHH--TTCEE
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccC----CEEEEEEecCCCcEEEEEEECCHHHHHHHHHHh--CCCEE
Confidence 346778883 2221 2478999999999 9999988765 478999999999999999999 78899
Q ss_pred cCeEEEEEecC
Q psy5142 343 KDVKVSIEVVT 353 (410)
Q Consensus 343 ~g~~v~v~~l~ 353 (410)
+|+.|.+....
T Consensus 81 ~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 AGKMITAAYVP 91 (114)
T ss_dssp TTEECEEEEEC
T ss_pred CCEEEEEEEEc
Confidence 99999999986
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.47 E-value=5.5e-07 Score=70.91 Aligned_cols=75 Identities=19% Similarity=0.273 Sum_probs=62.8
Q ss_pred cCCCCCeEEEEeCCCCC-----CCH----HHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCe
Q psy5142 270 LELPTGALLKISDIKEP-----VSR----EDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEI 340 (410)
Q Consensus 270 ~~~~~g~~l~v~nL~~~-----~t~----edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~ 340 (410)
...|++.+|.|.-+++. .-. .+|.+.|.+|| +|..|++..+. +||.|.+.++|.+||. | ++.
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G----~Vilvr~v~d~--~fVtF~d~~sAl~AI~-l--dG~ 80 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYG----TIVLVRINQGQ--MLVTFADSHSALSVLD-V--DGM 80 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHS----CCSEEEEETTE--EEEECSCSHHHHHHHH-G--GGS
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCC----CEEEEEEecCc--EEEEEcChHHHHHHHh-c--CCe
Confidence 34678888888877643 222 67999999999 99999998855 9999999999999998 8 789
Q ss_pred EEcCeEEEEEecC
Q psy5142 341 VIKDVKVSIEVVT 353 (410)
Q Consensus 341 ~i~g~~v~v~~l~ 353 (410)
.++|+.|+|++.+
T Consensus 81 ~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 81 KVKGRAVKISGPS 93 (95)
T ss_dssp EETTEEEEEECCC
T ss_pred eeCCeEEEEeccC
Confidence 9999999998764
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.20 E-value=9.8e-06 Score=65.19 Aligned_cols=72 Identities=15% Similarity=0.158 Sum_probs=66.5
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHhc-----CCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEE
Q psy5142 275 GALLKISDIKEPVSREDIREVLEKV-----QTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSI 349 (410)
Q Consensus 275 g~~l~v~nL~~~~t~edLk~~F~~~-----G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v 349 (410)
..+|-+.|||+.+++..|+.+..++ | .+..|.+.++.+.|+|.|.+...|.+|.-+| +|.+++|+.|.+
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g----~i~KI~L~pDH~GAivef~d~~~AgKasLaL--~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEK----DIRKILLVSDFNGAIIIFRDSKFAAKMLMIL--NGSQFQGKVIRS 94 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTT----TCSEEEEETTTTEEEEECSCHHHHHHHHHHH--SSEEETTEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCcc----ceeEEEEecCCCceEEEEccchhhHHHHhhc--CCeeecCeEEEe
Confidence 3478899999999999999999999 8 9999999999999999999999999999999 789999999988
Q ss_pred Eec
Q psy5142 350 EVV 352 (410)
Q Consensus 350 ~~l 352 (410)
--+
T Consensus 95 gTv 97 (117)
T 2l9w_A 95 GTI 97 (117)
T ss_dssp ECH
T ss_pred cCH
Confidence 654
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.03 E-value=6.1e-06 Score=75.48 Aligned_cols=60 Identities=13% Similarity=0.145 Sum_probs=49.8
Q ss_pred CCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 131 ATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 131 ~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
-..++|.+.|++| |.|.+|.++++..+......++|++||+|.+.++|.+|+..++| ..|
T Consensus 141 e~~~dl~~e~~~~----G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~g--r~~ 200 (222)
T 3dxb_A 141 DLEGEVTEECGKF----GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNG--RWF 200 (222)
T ss_dssp THHHHHHHHHTTT----SCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTT--CBS
T ss_pred HHHHHHHHHHHcc----CCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcC--ceE
Confidence 4568999999999 99999999876544222236899999999999999999999997 456
No 381
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.94 E-value=9.1e-06 Score=63.61 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=46.9
Q ss_pred ceeeEeecCCC----C-CC---HHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcC
Q psy5142 119 AQSLYVKYIPV----D-AT---LDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENK 190 (410)
Q Consensus 119 ~rtv~V~~lp~----~-~t---~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~ 190 (410)
.-||+|.-.|. + .+ ..+|.+.|++| |+|..|++..+ .+||+|.+.++|.+|++ ++
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~----G~Vi~vr~~~d------------~~fVtF~d~~sAlaAi~-mn 69 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASF----GEVILIRFVED------------KMWVTFLEGSSALNVLS-LN 69 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTT----CCEEEEEECSS------------SEEEEESSHHHHHHGGG-GT
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhC----CCeEEEEEecC------------CEEEEECChHHHHHHHh-cC
Confidence 45788877662 2 23 37799999999 99999998753 28999999999999999 77
Q ss_pred CCCccc
Q psy5142 191 DKNLKF 196 (410)
Q Consensus 191 g~~~~~ 196 (410)
| ..+
T Consensus 70 G--~~v 73 (91)
T 2dnr_A 70 G--KEL 73 (91)
T ss_dssp T--CEE
T ss_pred C--eEe
Confidence 6 455
No 382
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.77 E-value=2.9e-05 Score=61.10 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=47.8
Q ss_pred ceeeEeecCCCC------CC---HHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhc
Q psy5142 119 AQSLYVKYIPVD------AT---LDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNEN 189 (410)
Q Consensus 119 ~rtv~V~~lp~~------~t---~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~ 189 (410)
.-||+|.-++.+ .+ ..+|.+.|++| |+|..|++..+ -+||+|.+.++|.+|++ +
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~----G~Vilvr~v~d------------~~fVtF~d~~sAl~AI~-l 77 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSY----GTIVLVRINQG------------QMLVTFADSHSALSVLD-V 77 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHH----SCCSEEEEETT------------EEEEECSCSHHHHHHHH-G
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHC----CCEEEEEEecC------------cEEEEEcChHHHHHHHh-c
Confidence 468999888643 23 36789999999 99999998753 19999999999999999 7
Q ss_pred CCCCccc
Q psy5142 190 KDKNLKF 196 (410)
Q Consensus 190 ~g~~~~~ 196 (410)
+| ..+
T Consensus 78 dG--~~v 82 (95)
T 1ufw_A 78 DG--MKV 82 (95)
T ss_dssp GG--SEE
T ss_pred CC--eee
Confidence 76 555
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.69 E-value=0.00019 Score=57.22 Aligned_cols=61 Identities=15% Similarity=0.147 Sum_probs=51.0
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhh-ccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcC
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKK-NTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENK 190 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~-~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~ 190 (410)
-.++|.|.|||.++..+.|.-+|++ --+..|+|.+|... .+.|+|+|.+.+.|++.|+...
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~------------~~~AvItF~d~~va~rVL~k~~ 68 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL------------GCGGVLTFREPADAERVLAQAD 68 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE------------TTEEEEEESSHHHHHHHHTCSC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc------------CCcEEEEEcChHHHHHHhcCCc
Confidence 3579999999999999999999987 33456899998753 2569999999999999998844
No 384
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.65 E-value=5.7e-05 Score=68.94 Aligned_cols=60 Identities=17% Similarity=0.129 Sum_probs=52.9
Q ss_pred CHHHHHHHHHhcCCCCCCeeEEEeeC----------CCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEEecC
Q psy5142 288 SREDIREVLEKVQTDDQEIVFIEFNV----------GEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVT 353 (410)
Q Consensus 288 t~edLk~~F~~~G~~~~~V~~V~~~~----------g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~~l~ 353 (410)
.+++|++.|++|| .|..|.+.+ +.+.+||+|.+.++|.+|+..| +|..++|+.|.+....
T Consensus 142 ~~~dl~~e~~~~G----~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l--~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGKFG----AVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQAL--NGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTTTS----CEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHH--TTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHccC----CeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHh--cCceECCeEEEEEEcC
Confidence 5689999999999 999988862 2346999999999999999999 7789999999999876
No 385
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=97.57 E-value=0.0011 Score=51.17 Aligned_cols=88 Identities=15% Similarity=0.331 Sum_probs=70.3
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHh---cCCC--eEEcCeE
Q psy5142 272 LPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKAL---GSKE--IVIKDVK 346 (410)
Q Consensus 272 ~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l---~~~~--~~i~g~~ 346 (410)
...+|+++|-|+|..+-..++--....+| ---|+|+.. +.|.|+|.+.+...-|+..+ +++. ++|.|..
T Consensus 9 ikqnclikiinipqgtlkaevvlavrhlg----yefycdyid--gqamirfqnsdeqrlaiqkllnhnnnklqieirgqi 82 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRHLG----YEFYCDYID--GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQI 82 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHTTC----CCEEEEECS--SCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEE
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehhcC----eeEeeeeec--CeeEEEecCChHHHHHHHHHHhcCCCEEEEEEccee
Confidence 34579999999999998888887888888 556788876 45999999999999999988 3333 4667887
Q ss_pred EE-EEecCchHHHHHHHHhH
Q psy5142 347 VS-IEVVTGEEEQTVLDRMK 365 (410)
Q Consensus 347 v~-v~~l~g~eE~~yw~k~~ 365 (410)
.. ++.+..+||+.||.-|.
T Consensus 83 cdvistipedeeknywnyik 102 (129)
T 4eyt_A 83 CDVISTIPEDEEKNYWNYIK 102 (129)
T ss_dssp EEEECCCCHHHHHHHHHHHH
T ss_pred eeeeecCCchhhhchhhhee
Confidence 74 45667899999998775
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.55 E-value=0.0003 Score=55.36 Aligned_cols=58 Identities=12% Similarity=0.307 Sum_probs=50.9
Q ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHh
Q psy5142 271 ELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKAL 335 (410)
Q Consensus 271 ~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l 335 (410)
......+++| +.|..+...||.++|+.|| ++.|.||+ ++.|||.|.+++.|..|+..+
T Consensus 12 ~p~r~HVf~l-~FP~ewKt~DI~~lFs~fg--gv~I~Wid----DTsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 12 QPKRDHVLHV-TFPKEWKTSDLYQLFSAFG--NIQISWID----DTSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCCCSEEEE-ECCTTCCHHHHHHHHTTTC--SCCCEEEE----TTEEEEECSCHHHHHHHHHHH
T ss_pred CCCCCeEEEE-eCChhhhhHHHHHHhhccC--CEEEEEEc----CCeEEEEecCHHHHHHHHHhc
Confidence 3445568888 9999999999999999998 56889987 588999999999999999987
No 387
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.00068 Score=54.53 Aligned_cols=67 Identities=13% Similarity=0.203 Sum_probs=57.6
Q ss_pred cceeeEeecCCCCCCHHHHHHHHhhccC-CCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 118 IAQSLYVKYIPVDATLDDIKDFFKKNTS-EDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 118 ~~rtv~V~~lp~~~t~~~L~~~F~~~~~-~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
..|||-+-|||-+++...|++|.++++. ..|.|..|.++.+..+ |+|+|.+...|-+|.-.++| ..|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~G----------Aivef~d~~~AgKasLaL~G--~ef 87 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNG----------AIIIFRDSKFAAKMLMILNG--SQF 87 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTE----------EEEECSCHHHHHHHHHHHSS--EEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCc----------eEEEEccchhhHHHHhhcCC--eee
Confidence 4799999999999999999999998844 5688999988765443 99999999999999988886 677
No 388
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.22 E-value=0.00028 Score=55.76 Aligned_cols=56 Identities=13% Similarity=0.326 Sum_probs=48.5
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhc
Q psy5142 274 TGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALG 336 (410)
Q Consensus 274 ~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~ 336 (410)
...+++| +.|..+...||.++|+.|| ++.|.||+ ++.|||.|.+++.|..|+..+.
T Consensus 5 R~HV~~l-~FP~ewKt~Di~~lFs~fg--gv~I~Wid----DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 5 SDHVLHV-TFPKEWKTSDLYQLFSAFG--NIQISWID----DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEEE-ECCTTCCHHHHHHHTTTSE--EEEEEEEE----TTEEEEEEEEECHHHHHHHHHT
T ss_pred CCeEEEE-eCChhhhhHHHHHHHhccC--CEEEEEEc----CCeEEEEecCHHHHHHHHHhcc
Confidence 4457777 9999999999999999998 45677776 5889999999999999999883
No 389
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.16 E-value=0.0013 Score=52.30 Aligned_cols=71 Identities=13% Similarity=0.177 Sum_probs=59.5
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhc---CCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEE
Q psy5142 274 TGALLKISDIKEPVSREDIREVLEKV---QTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIE 350 (410)
Q Consensus 274 ~g~~l~v~nL~~~~t~edLk~~F~~~---G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~ 350 (410)
-+..|.|.|||+.++++.|.-+|+.- | +-+|..|++.. ..|+|.|.++..|+..|+.- .+.+++..|.|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsG--GG~V~~v~~~~--~~AvItF~d~~va~rVL~k~---~H~L~~~~LsV~ 79 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSG--GGPVLSWQRLG--CGGVLTFREPADAERVLAQA---DHELHGAQLSLR 79 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTC--CCCEEEEEEET--TEEEEEESSHHHHHHHHTCS---CCBSSSSBCEEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCC--CceeeEEEEcC--CcEEEEEcChHHHHHHhcCC---cceecCeEEEEE
Confidence 35689999999999999999999972 3 24899998877 88999999999999888762 578888888886
Q ss_pred e
Q psy5142 351 V 351 (410)
Q Consensus 351 ~ 351 (410)
.
T Consensus 80 P 80 (104)
T 2dhx_A 80 P 80 (104)
T ss_dssp E
T ss_pred c
Confidence 4
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.59 E-value=0.0067 Score=47.42 Aligned_cols=56 Identities=16% Similarity=0.360 Sum_probs=50.3
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCc--------eEEEEeCChhHHHHHHHHhc
Q psy5142 277 LLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEP--------TAFVRYKKENNAEAVLKALG 336 (410)
Q Consensus 277 ~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~--------~afV~F~~~e~A~~Al~~l~ 336 (410)
-|.|+.||+..|++++.+.++.+. .+.+..+.+|+. .|||.|.+.+++....+.++
T Consensus 3 KvVIRrLPP~LteeeF~~~l~~~~----~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~ 66 (91)
T 1uw4_A 3 KVVIRRLPPTLTKEQLQEHLQPMP----EHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFD 66 (91)
T ss_dssp EEEEEEECTTCCHHHHHHHHCSCC----CEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCHHHHHHHhcCcc----cceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhC
Confidence 477999999999999999999998 899999988763 39999999999999999994
No 391
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.06 E-value=0.019 Score=45.83 Aligned_cols=72 Identities=8% Similarity=0.059 Sum_probs=59.0
Q ss_pred eEEEEeCCCCCC-C----HHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcCeEEEEE
Q psy5142 276 ALLKISDIKEPV-S----REDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIE 350 (410)
Q Consensus 276 ~~l~v~nL~~~~-t----~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g~~v~v~ 350 (410)
..|.|.||+.++ . .+.++++|..|+ ++....+.+.=...-|.|.++++|.+|-..| ++..++|..+++=
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~----~~~tF~~lkSFRRirv~F~~~~~A~~AR~~L--h~~~f~g~~~r~Y 79 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYD----KDTTFQYFKSFKRVRINFSNPLSAADARLRL--HKTEFLGKEMKLY 79 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTC----SSCEEEEETTTTEEEEECSSTTHHHHHHHTS--TTSEETTEECEEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhC----cCcceeecCcceEEEEEeCChHHHHHHHHHh--ccceecCceeEEE
Confidence 368899998866 3 367788999999 7766677776667899999999999999999 7899999988776
Q ss_pred ecC
Q psy5142 351 VVT 353 (410)
Q Consensus 351 ~l~ 353 (410)
..+
T Consensus 80 Fgq 82 (104)
T 1wey_A 80 FAQ 82 (104)
T ss_dssp CCC
T ss_pred ecC
Confidence 543
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.01 E-value=0.0069 Score=47.64 Aligned_cols=53 Identities=23% Similarity=0.286 Sum_probs=42.3
Q ss_pred eeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhc
Q psy5142 120 QSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNEN 189 (410)
Q Consensus 120 rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~ 189 (410)
.-+++ +||.+....||..+|++| |.|. |+.+ . -..|||.|.+++.|..|+..+
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~f----ggv~-I~Wi--d---------DTsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAF----GNIQ-ISWI--D---------DTSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTT----CSCC-CEEE--E---------TTEEEEECSCHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhcc----CCEE-EEEE--c---------CCeEEEEecCHHHHHHHHHhc
Confidence 34555 999999999999999999 8442 3332 2 346999999999999999976
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.88 E-value=0.0079 Score=47.44 Aligned_cols=54 Identities=20% Similarity=0.261 Sum_probs=42.4
Q ss_pred eeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcC
Q psy5142 121 SLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENK 190 (410)
Q Consensus 121 tv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~ 190 (410)
-||+-+||.+....||..+|++| |. |.|.-..+ ..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~f----gg---v~I~WidD---------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAF----GN---IQISWIDD---------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTS----EE---EEEEEEET---------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEEeCChhhhhHHHHHHHhcc----CC---EEEEEEcC---------CeEEEEecCHHHHHHHHHhcc
Confidence 34444999999999999999999 93 33332223 369999999999999999763
No 394
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.79 E-value=0.0041 Score=62.90 Aligned_cols=62 Identities=15% Similarity=0.198 Sum_probs=47.9
Q ss_pred hhhhccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHh
Q psy5142 113 FVKDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNE 188 (410)
Q Consensus 113 ~~~~~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~ 188 (410)
.|.+...|+|+|. +|..+++.+|.++|++| |+|.++.|-+ ...-||.|||.+.+++..++..
T Consensus 47 ~r~~qa~rsv~v~-~~~~~~~~~l~~y~~~~----g~i~~~~~~~---------~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 47 ERREQAQRTVLIH-CPEKISENKFLKYLSQF----GPINNHFFYE---------SFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHHHHHHTEEEEE-ECCC---CHHHHHHGGG----SCCCCEEEEC---------SSSEEEEEECC---CCHHHHSS
T ss_pred HHHHHhcceEEEE-cCCCCCHHHHHHHHHhc----CCcceEEEEc---------cCCeEEEEEeCCHHHHHHHHhc
Confidence 4667888999998 79999999999999999 9999999864 2346999999999999988755
No 395
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.66 E-value=0.033 Score=43.45 Aligned_cols=69 Identities=12% Similarity=0.240 Sum_probs=53.1
Q ss_pred eeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 120 QSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 120 rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
..|.|+.||+..|++++.+.++.+ ..+..........+.++ ..-.-|||.|.+.+++....+..+| ..|
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~----~~~d~~~fv~G~~s~~~--~~~SRaYi~f~~~e~v~~f~~~~~g--~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPM----PEHDYFEFFSNDTSLYP--HMYARAYINFKNQEDIILFRDRFDG--YVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSC----CCEEEEEEEESCCSSTT--CCCEEEEEEESSSHHHHHHHHHHTT--CEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCc----ccceEEEEeCCccCCCC--CcceEEEEEeCCHHHHHHHHHHhCC--cEE
Confidence 468999999999999999999998 77766655443322110 2235599999999999999999997 455
No 396
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.64 E-value=0.033 Score=45.56 Aligned_cols=59 Identities=19% Similarity=0.136 Sum_probs=50.6
Q ss_pred ccceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcC
Q psy5142 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENK 190 (410)
Q Consensus 117 ~~~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~ 190 (410)
...+-|.|-+||... .+.|...|++| |.|.....+ ....+..|.|.+..+|++||....
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~----G~Iv~~~~~----------~~~NWihI~Y~s~~~A~rAL~kNG 80 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQY----GNILKHVMS----------NTGNWMHIRYQSKLQARKALSKDG 80 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTT----SCEEEEEEC----------SSSSEEEEEESSHHHHHHHHTTTT
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhh----CcEEEeccC----------CCCCeEEEEeCCHHHHHHHHHhCC
Confidence 457889999999885 68899999999 999988862 336789999999999999999854
No 397
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.19 E-value=0.058 Score=44.09 Aligned_cols=71 Identities=8% Similarity=0.116 Sum_probs=57.2
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhcCCCeEEcC-eEEEEEecC
Q psy5142 275 GALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKD-VKVSIEVVT 353 (410)
Q Consensus 275 g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~~~~~~i~g-~~v~v~~l~ 353 (410)
.+-|.|.|.|+.. -..+-..|++|| +|....+..+..--+|+|.++.+|++||.. ++..++| ..|-|..+.
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G----~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~k---NG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYG----NILKHVMSNTGNWMHIRYQSKLQARKALSK---DGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTS----CEEEEEECSSSSEEEEEESSHHHHHHHHTT---TTCEETTTEECEEEECC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhC----cEEEeccCCCCCeEEEEeCCHHHHHHHHHh---CCeEecCCEEEEEEECC
Confidence 4577788988875 567888999999 998888766777899999999999999977 5777875 556777655
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.00 E-value=0.022 Score=44.90 Aligned_cols=56 Identities=13% Similarity=0.332 Sum_probs=47.2
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCc--------eEEEEeCChhHHHHHHHHhc
Q psy5142 277 LLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEP--------TAFVRYKKENNAEAVLKALG 336 (410)
Q Consensus 277 ~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~--------~afV~F~~~e~A~~Al~~l~ 336 (410)
-|.|+.||+..|++++.+.++.+- ++.|..+.+|+. .|||.|.+.++.....+.++
T Consensus 11 KvVIRrLPP~Ltee~F~~~l~~~~----~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~ 74 (97)
T 2l08_A 11 MVVIRRLPPGLTKEQLEEQLRPLP----AHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFD 74 (97)
T ss_dssp CEEEECCCSCSCHHHHTTTTSCCS----SEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHST
T ss_pred eEEEeCCCCCCCHHHHHHHhCCcC----ccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcC
Confidence 467999999999999888888776 777877777653 39999999999999999983
No 399
>2lsl_A Telomerase associated protein P65; LA protein, LARP7, RRM, RNA BI protein; NMR {Tetrahymena thermophila}
Probab=92.55 E-value=0.014 Score=45.41 Aligned_cols=92 Identities=16% Similarity=0.339 Sum_probs=59.1
Q ss_pred cCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeC-----------------------CCceEEEEeCChh
Q psy5142 270 LELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNV-----------------------GEPTAFVRYKKEN 326 (410)
Q Consensus 270 ~~~~~g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~-----------------------g~~~afV~F~~~e 326 (410)
.....+|+++|-|+|..+-..++--....+| ---|+++.. ..+.|.|+|.+.+
T Consensus 13 veikqnclikiinipqgtlkaevvlavrhlg----yefycdyidensnqinsnliqqdqhpqlndllkegqamirfqnsd 88 (137)
T 2lsl_A 13 VEIKQNCLIKIINIPQGTLKAEVVLAVRHLG----YEFYCDYIDENSNQINSNLIQQDQHPQLNDLLKEGQAMIRFQNSD 88 (137)
Confidence 3455678999999998776555444444444 111222211 1234899999988
Q ss_pred HHHHHHHHh---cCCC--eEEcCeEE-EEEecCchHHHHHHHHhH
Q psy5142 327 NAEAVLKAL---GSKE--IVIKDVKV-SIEVVTGEEEQTVLDRMK 365 (410)
Q Consensus 327 ~A~~Al~~l---~~~~--~~i~g~~v-~v~~l~g~eE~~yw~k~~ 365 (410)
...-|+..+ +++. ++|.|... .++....+||+.||.-|+
T Consensus 89 eqrlaiqkllnhnnnklqieirgqicdvistipedeeknywnyik 133 (137)
T 2lsl_A 89 EQRLAIQKLLNHNNNKLQIEIRGQICDVISTIPEDEEKNYWNYIK 133 (137)
Confidence 888888887 3333 45667766 345667799999998764
No 400
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=92.84 E-value=0.13 Score=40.48 Aligned_cols=70 Identities=10% Similarity=0.175 Sum_probs=47.2
Q ss_pred ceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCCccc
Q psy5142 119 AQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196 (410)
Q Consensus 119 ~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~~~~ 196 (410)
.-.|.|+.||+..|++++.+.++++ =.+..........+.. ...-.-|||.|.+.+++..+.+..+| ..|
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~----~~~d~~~fv~G~~s~~--~~~~SRAYI~F~~~edv~~F~~~f~g--~~F 78 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPL----PAHDYFEFFAADLSLY--PHLYSRAYINFRNPDDILLFRDRFDG--YIF 78 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCC----SSEEECCCCCCCSSSC--CSCCCCCEEEESCHHHHHHHHHHSTT--EEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCc----CccceEEEeCCccCCC--CCcceEEEEEeCCHHHHHHHHHHcCC--cEE
Confidence 3578999999999999988877766 3332222111111100 01224599999999999999999997 455
No 401
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.51 E-value=0.21 Score=39.67 Aligned_cols=62 Identities=18% Similarity=0.185 Sum_probs=48.1
Q ss_pred ceeeEeecCCCCC-C---H-HHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCCCC
Q psy5142 119 AQSLYVKYIPVDA-T---L-DDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKN 193 (410)
Q Consensus 119 ~rtv~V~~lp~~~-t---~-~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g~~ 193 (410)
..||+|.|||.++ + . +.++++|..| +++......+ .++ =+-|.|.++++|.+|-..+++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~----~~~~tF~~lk---------SFR-Rirv~F~~~~~A~~AR~~Lh~-- 68 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTY----DKDTTFQYFK---------SFK-RVRINFSNPLSAADARLRLHK-- 68 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTT----CSSCEEEEET---------TTT-EEEEECSSTTHHHHHHHTSTT--
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhh----CcCcceeecC---------cce-EEEEEeCChHHHHHHHHHhcc--
Confidence 4689999998763 2 2 6779999999 8887776654 233 378999999999999999985
Q ss_pred ccc
Q psy5142 194 LKF 196 (410)
Q Consensus 194 ~~~ 196 (410)
..|
T Consensus 69 ~~f 71 (104)
T 1wey_A 69 TEF 71 (104)
T ss_dssp SEE
T ss_pred cee
Confidence 445
No 402
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=90.39 E-value=0.17 Score=42.01 Aligned_cols=67 Identities=16% Similarity=0.116 Sum_probs=45.2
Q ss_pred ceeeEeecCCCCCCHHHHHHHHhhccCCCCceEEE-EEcccCc---------ccccccccccEEEEEecCHHHHHHHHHh
Q psy5142 119 AQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNI-IMRNYQD---------KLANQKKFKGSIFVTFDNKENAEKFLNE 188 (410)
Q Consensus 119 ~rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v-~l~~~~~---------~~~~~~~~kG~afVeF~~~e~A~~Al~~ 188 (410)
...|.|=|+|.+.+ ..|.+.|++| |.|..- .+.+... +..+......+..|+|+++.+|.+||..
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~----G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~ 81 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEF----GTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE 81 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGG----SCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhh----ceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh
Confidence 45788889987654 6788899999 999762 2222110 1000011356889999999999999988
Q ss_pred cC
Q psy5142 189 NK 190 (410)
Q Consensus 189 ~~ 190 (410)
..
T Consensus 82 NG 83 (132)
T 3p3d_A 82 NG 83 (132)
T ss_dssp TT
T ss_pred CC
Confidence 65
No 403
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=85.94 E-value=1 Score=48.76 Aligned_cols=82 Identities=22% Similarity=0.362 Sum_probs=60.8
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCCChhHHhhhc----cC-C--CeEehHHHHhh-HHHHhccC--------c----HHHH
Q psy5142 18 EVSKLENQIIEQIEYYFSDINLARDKFLQGEIK----KD-D--GWVELTTMLKF-ARLAKMTT--------E----AKVI 77 (410)
Q Consensus 18 ~~~~~~~~i~~QlEfYfsd~Nl~~D~fl~~~~~----~~-~--g~v~l~~l~~F-~r~k~l~~--------d----~~~i 77 (410)
...+....|+.+|.|.|||+=|.-..=|..++. .+ + |.||.++|+++ .|+..+.. | ...|
T Consensus 103 ~~~~~~~~~~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~~~~~~~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~ 182 (950)
T 3htx_A 103 TVDEARDEIVGRIKYIFSDEFLSAEHPLGAHLRAALRRDGERCGSVPVSVIATVDAKINSRCKIINPSVESDPFLAISYV 182 (950)
T ss_dssp CHHHHHHHHHHHHHHHTSTGGGGCSSTHHHHHHHHHTSCGGGTTEECHHHHHHTCHHHHHHHHHHCTHHHHCTHHHHHHH
T ss_pred chhhHHHHHHHHHHHHhhhhhhhccCchHHHHHHHHhhcCccccccchhhheehhhhhhhhhhhcCcccccChHHHHHHH
Confidence 457889999999999999998888876666555 33 3 99999999998 66655432 2 3567
Q ss_pred HHHHhhcCCceEEEecCccceecCC
Q psy5142 78 VDALKKSTSKLIEVNEDGTKIRRNP 102 (410)
Q Consensus 78 ~~Al~~~~S~~levsed~~~vrR~~ 102 (410)
..|..+ +..+.++..+ -|+|..
T Consensus 183 ~~a~~~--~~~~~~~~~~-~~~~~~ 204 (950)
T 3htx_A 183 MKAAAK--LADYIVASPH-GLRRKN 204 (950)
T ss_dssp HHHHHH--CCSSEEEETT-EEEESS
T ss_pred HHHhhc--CCCcEEeCCc-ccccCC
Confidence 777774 4344477777 999984
No 404
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=84.76 E-value=0.67 Score=46.70 Aligned_cols=53 Identities=15% Similarity=0.110 Sum_probs=38.3
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCc-eEEEEeCChhHHHHHHHH
Q psy5142 277 LLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEP-TAFVRYKKENNAEAVLKA 334 (410)
Q Consensus 277 ~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~-~afV~F~~~e~A~~Al~~ 334 (410)
.|+|. .|..++..+|.++|++|| .|..+-+-...+ +|.|+|.+.+++.+++..
T Consensus 55 sv~v~-~~~~~~~~~l~~y~~~~g----~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 55 TVLIH-CPEKISENKFLKYLSQFG----PINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp EEEEE-ECCC---CHHHHHHGGGS----CCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred eEEEE-cCCCCCHHHHHHHHHhcC----CcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 57776 588999999999999999 998877666544 699999999988877644
No 405
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=82.89 E-value=1.8 Score=35.86 Aligned_cols=69 Identities=14% Similarity=0.187 Sum_probs=49.5
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeE-EEe-----------------e--CCCceEEEEeCChhHHHHHHHHhc
Q psy5142 277 LLKISDIKEPVSREDIREVLEKVQTDDQEIVF-IEF-----------------N--VGEPTAFVRYKKENNAEAVLKALG 336 (410)
Q Consensus 277 ~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~-V~~-----------------~--~g~~~afV~F~~~e~A~~Al~~l~ 336 (410)
-|.|.|.|+..+. .+-+.|++|| .|.. +.. + .|..--.|+|+++.+|.+||..
T Consensus 9 ~VtVFGFp~~~~~-~VI~~Fs~~G----~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-- 81 (132)
T 3p3d_A 9 AILVFGYPETMAN-QVIAYFQEFG----TILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-- 81 (132)
T ss_dssp EEEEECCCGGGHH-HHHHHHGGGS----CBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT--
T ss_pred EEEEEecCHHHHH-HHHHHHHhhc----eEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh--
Confidence 4667888877655 4667899999 5533 111 1 1233468999999999999876
Q ss_pred CCCeEEcCeEEEEEecC
Q psy5142 337 SKEIVIKDVKVSIEVVT 353 (410)
Q Consensus 337 ~~~~~i~g~~v~v~~l~ 353 (410)
+|..++|.-|-|....
T Consensus 82 -NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 82 -NGAVFNGVLLGVIPYT 97 (132)
T ss_dssp -TTCEETTEECEEEECC
T ss_pred -CCeEeCcEEEEEEECC
Confidence 5788999977888776
No 406
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=77.97 E-value=0.74 Score=37.51 Aligned_cols=15 Identities=7% Similarity=0.018 Sum_probs=8.8
Q ss_pred eeCCCceEEEEeCCh
Q psy5142 311 FNVGEPTAFVRYKKE 325 (410)
Q Consensus 311 ~~~g~~~afV~F~~~ 325 (410)
+.+|....||...+.
T Consensus 59 ~IRG~nI~~I~~pd~ 73 (119)
T 1b34_A 59 SIRGNNIRYFILPDS 73 (119)
T ss_dssp EECGGGEEEEECCTT
T ss_pred EEcCCeEEEEEeccc
Confidence 445666666666554
No 407
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=76.67 E-value=6.6 Score=31.02 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCCCCCCeeEEEeeCCCc---e-EEEEeCChhHHHHHHHHh
Q psy5142 290 EDIREVLEKVQTDDQEIVFIEFNVGEP---T-AFVRYKKENNAEAVLKAL 335 (410)
Q Consensus 290 edLk~~F~~~G~~~~~V~~V~~~~g~~---~-afV~F~~~e~A~~Al~~l 335 (410)
+.|+++-...| ..|++..... . -+.-+-+++..++|...+
T Consensus 31 ~~Ik~I~~~TG------akI~I~~~~~~~~er~V~I~G~~e~v~~A~~~I 74 (106)
T 2hh3_A 31 EMIKKIQNDAG------VRIQFKQDDGTGPEKIAHIMGPPDRCEHAARII 74 (106)
T ss_dssp HHHHHHHHHHT------CEEEECSSCSSSSEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHC------cEEEEecCCCCCceeEEEEEeCHHHHHHHHHHH
Confidence 67788888888 4566654322 1 233335677777777776
No 408
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=76.63 E-value=4 Score=41.58 Aligned_cols=54 Identities=24% Similarity=0.279 Sum_probs=42.7
Q ss_pred eeeEeecCCCCCCHHHHHHHHhhccCCCCceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcC
Q psy5142 120 QSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENK 190 (410)
Q Consensus 120 rtv~V~~lp~~~t~~~L~~~F~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~ 190 (410)
..++|+ ||..+...+|.++|+.| |.| +|+ .. ...+|||.|.+.+.|..++..+.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~f----g~v-~V~--wi---------ddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAF----GNI-QIS--WI---------DDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGG----CCC-EEE--EC---------SSSEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhc----CCE-EEE--EE---------cCCeEEEEECCHHHHHHHHHHHH
Confidence 455555 99999999999999999 954 343 22 24469999999999999999875
No 409
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=75.62 E-value=6.9 Score=39.79 Aligned_cols=55 Identities=13% Similarity=0.279 Sum_probs=44.0
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHhc
Q psy5142 275 GALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALG 336 (410)
Q Consensus 275 g~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l~ 336 (410)
..++++. +|..+...+|.++|+.|| .| .|. .-+++.|||.|.+++.|..++..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg----~v-~V~-widdt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFG----NI-QIS-WIDDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGC----CC-EEE-ECSSSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcC----CE-EEE-EEcCCeEEEEECCHHHHHHHHHHHH
Confidence 4466665 888889999999999999 44 222 2345789999999999999999994
No 410
>1wfx_A Probable RNA 2'-phosphotransferase; tRNA splicing, NAD, structural GE riken structural genomics/proteomics initiative, RSGI; 2.80A {Aeropyrum pernix} SCOP: d.166.1.5
Probab=74.85 E-value=6.8 Score=34.36 Aligned_cols=52 Identities=17% Similarity=0.274 Sum_probs=38.2
Q ss_pred CCeEehHHHHhhHHHH--hccCcHHHHHHHHhhcCCceEEEecCccceecCCCCCCC
Q psy5142 53 DGWVELTTMLKFARLA--KMTTEAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELP 107 (410)
Q Consensus 53 ~g~v~l~~l~~F~r~k--~l~~d~~~i~~Al~~~~S~~levsed~~~vrR~~~~p~p 107 (410)
+|||+|+.|+. .+.+ -...+.+.|.+++..++-.-.+++.+ +||=.....++
T Consensus 27 ~G~v~v~~LL~-~~~~~~~~~~t~~~l~~vV~~~~K~Rf~l~~~--~IRA~qGHSi~ 80 (186)
T 1wfx_A 27 EGWARVSEVVE-GLRKAGWSWVEEWHIVGVALHDPKGRYELRNG--EIRARYGHSIP 80 (186)
T ss_dssp TCCEEHHHHHH-HHHHTTCTTCCHHHHHHHHHHCSSCCEEEETT--EEEESSCCSSC
T ss_pred CCCEEHHHHHh-hhhhcccCCCCHHHHHHHHhcCCCCceEeecc--EEEeccCCCCc
Confidence 59999999999 4444 34456788888888766667888854 78887655554
No 411
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=70.28 E-value=0.9 Score=44.24 Aligned_cols=16 Identities=19% Similarity=0.191 Sum_probs=11.5
Q ss_pred CCCCHHHHHHHHHhcC
Q psy5142 285 EPVSREDIREVLEKVQ 300 (410)
Q Consensus 285 ~~~t~edLk~~F~~~G 300 (410)
..++.++|.+....+-
T Consensus 227 ~~vt~~~l~~i~~~il 242 (358)
T 2pk2_A 227 ATVTLELLDELTHEFL 242 (358)
T ss_dssp SSCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHH
Confidence 3568888888877643
No 412
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=56.72 E-value=31 Score=23.46 Aligned_cols=56 Identities=18% Similarity=0.252 Sum_probs=41.8
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHh
Q psy5142 276 ALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKAL 335 (410)
Q Consensus 276 ~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l 335 (410)
..+.|.|+.-.--...|...+.... .|..+.+......+.|.|....+....++.+
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~----gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i 59 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVP----GVQSCQVNFALEQAVVSYHGETTPQILTDAV 59 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTST----TEEEEEEETTTTEEEEEECTTCCHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCC----CeEEEEEEecCCEEEEEECCCCCHHHHHHHH
Confidence 3577888877667888999999987 7988888887788999995444444444444
No 413
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=51.79 E-value=29 Score=26.32 Aligned_cols=56 Identities=25% Similarity=0.398 Sum_probs=38.8
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEE---eeCCCceEEEEeCChhHHHHHHHHh
Q psy5142 276 ALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIE---FNVGEPTAFVRYKKENNAEAVLKAL 335 (410)
Q Consensus 276 ~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~---~~~g~~~afV~F~~~e~A~~Al~~l 335 (410)
..+|+ ++...+..+|++.++++- ++.|..|. .+.|...|||++....+|......+
T Consensus 25 ~~~F~--Vd~~AnK~qIK~AVe~lf--~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 25 KLTFI--VDRRATKQDIKRAVEEIF--NVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp EEEEE--ECTTCCHHHHHHHHHHHT--TCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHHS
T ss_pred EEEEE--EcCCCCHHHHHHHHHHHc--CCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHHhh
Confidence 34444 456789999999999843 13455543 3345567999999988887766655
No 414
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=48.44 E-value=65 Score=22.29 Aligned_cols=55 Identities=11% Similarity=0.122 Sum_probs=42.4
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHh
Q psy5142 276 ALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKAL 335 (410)
Q Consensus 276 ~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l 335 (410)
..+.|.|+.-.--...|...+.. . .|..+.+......+.|.|.+.+....+|+.+
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~----gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-A----GAKVEKVDLNEAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-T----TCEEEEECSSEEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-C----CcEEEEEEccCCEEEEEECCHHHHHHHHHHc
Confidence 46888998877778899999999 8 7888887776677889998545556666655
No 415
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=41.24 E-value=8.1 Score=34.21 Aligned_cols=11 Identities=27% Similarity=0.489 Sum_probs=4.3
Q ss_pred CCCCCCCCCcc
Q psy5142 392 GTKRSRGGNFE 402 (410)
Q Consensus 392 G~~~~rgg~~~ 402 (410)
|+.||.||+..
T Consensus 192 ~~~~~~~~~~~ 202 (215)
T 2l6f_A 192 GGSGGSGGSSA 202 (215)
Confidence 33344444433
No 416
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=33.88 E-value=85 Score=20.69 Aligned_cols=56 Identities=16% Similarity=0.214 Sum_probs=39.5
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCCh---hHHHHHHHHh
Q psy5142 276 ALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKE---NNAEAVLKAL 335 (410)
Q Consensus 276 ~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~---e~A~~Al~~l 335 (410)
..+.|.|+.-......|...+.... .|..+.+......+.|.|... +....++..+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~----gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~ 63 (71)
T 2xmw_A 5 INLQLEGMRCAACASSIERAIAKVP----GVQSCQVNFALEQAVVSYHGETTPQILTDAVERA 63 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTST----TEEEEEEETTTTEEEEEEC---CHHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCC----CeEEEEEEccCCEEEEEECCCCCHHHHHHHHHHc
Confidence 3577888766556677899999887 788888888778899999743 2234444444
No 417
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=33.54 E-value=50 Score=24.89 Aligned_cols=48 Identities=19% Similarity=0.368 Sum_probs=33.3
Q ss_pred CCCCCCHHHHHHHHHh-cCCCCCCeeEEE---eeCCCceEEEEeCChhHHHHHHH
Q psy5142 283 IKEPVSREDIREVLEK-VQTDDQEIVFIE---FNVGEPTAFVRYKKENNAEAVLK 333 (410)
Q Consensus 283 L~~~~t~edLk~~F~~-~G~~~~~V~~V~---~~~g~~~afV~F~~~e~A~~Al~ 333 (410)
++...+..+|++.+++ |+ +.|..|. .+++...|||++....+|-....
T Consensus 29 V~~~AnK~qIK~ave~lf~---VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~~~ 80 (85)
T 1vq8_S 29 VDDRASKGEVADAVEEQYD---VTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVAS 80 (85)
T ss_dssp ECTTCCHHHHHHHHHHHHC---CCEEEEEEEECTTSSEEEEEEECTTSCHHHHHT
T ss_pred ECCCCCHHHHHHHHHHHhC---CCceEEEeeecCCCceEEEEEECCCCcHHHHHH
Confidence 4678899999999998 56 3454443 33445569999988766554443
No 418
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=33.35 E-value=1.1e+02 Score=23.04 Aligned_cols=34 Identities=18% Similarity=0.392 Sum_probs=28.2
Q ss_pred ceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcCC
Q psy5142 149 KITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKD 191 (410)
Q Consensus 149 ~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~g 191 (410)
.|..|.+|. .|.||.||++.-.++...++....|
T Consensus 39 ~i~~v~vP~---------~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 39 DVYSILASE---------SLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp CEEEEEECT---------TSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred cEEEEEEec---------ccCCEEEEEEecchhHHHHHHCCCC
Confidence 477777764 6999999999999999999987774
No 419
>2av5_A Ribonuclease P protein component 2; hydrolase; 3.15A {Pyrococcus furiosus} SCOP: d.58.59.1
Probab=32.23 E-value=65 Score=25.63 Aligned_cols=59 Identities=19% Similarity=0.217 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCCh--hHHHHHHHHhcCCCeEEcCeEEEEEec
Q psy5142 290 EDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKE--NNAEAVLKALGSKEIVIKDVKVSIEVV 352 (410)
Q Consensus 290 edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~--e~A~~Al~~l~~~~~~i~g~~v~v~~l 352 (410)
+.+.++|+.+|.-.+.+..+.+......|.||.... +.+..|+..+ ..++|.++.++++
T Consensus 40 ~av~~~fGd~G~~~~~~~v~~f~~~t~~~IiRc~r~~~~~v~aaLtli----~~i~~~~~~~~vl 100 (120)
T 2av5_A 40 NACLRTLGELGTAKAKPWLIKFDETTQTGIIRSDRNHVYDVIFSLTLV----SDINGNKAIIKVL 100 (120)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEETTTTEEEEEEEGGGHHHHHHHHHTC----CEETTEEEEEEEE
T ss_pred HHHHHhCCcccccccCccEEEEcCCCCEEEEEeCchhHHHHHHHHHHH----hhCCCEEEEEEEe
Confidence 344456666661101123345677778899998753 4555566555 4678888877765
No 420
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=31.42 E-value=1.2e+02 Score=20.55 Aligned_cols=56 Identities=7% Similarity=0.124 Sum_probs=41.7
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCCh----hHHHHHHHHh
Q psy5142 276 ALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKE----NNAEAVLKAL 335 (410)
Q Consensus 276 ~~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~----e~A~~Al~~l 335 (410)
..+.|.|+.-.--...|...+.... .|..+.+......+.|.|... +....++..+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~----gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVN----GVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTST----TEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCC----CEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHC
Confidence 3577888876667788999999987 788887777677899999743 4445555554
No 421
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=31.38 E-value=78 Score=26.50 Aligned_cols=56 Identities=11% Similarity=0.283 Sum_probs=38.9
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHh-cCCCCCCeeEEEe---eCCCceEEEEeCChhHHHHHHHHh
Q psy5142 275 GALLKISDIKEPVSREDIREVLEK-VQTDDQEIVFIEF---NVGEPTAFVRYKKENNAEAVLKAL 335 (410)
Q Consensus 275 g~~l~v~nL~~~~t~edLk~~F~~-~G~~~~~V~~V~~---~~g~~~afV~F~~~e~A~~Al~~l 335 (410)
+..+|+. +...+..+|++.+++ |+ +.|..|.. +.|...|||++....+|......+
T Consensus 88 N~~vF~V--d~kAnK~qIK~AVEklf~---VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAnki 147 (150)
T 4a17_R 88 NTMVFYV--HNRSTKPQIKSAFEKLYN---VKVRSVNTLNTITGNKKAYIRLAADSDSLTLANKI 147 (150)
T ss_dssp SEEEEEE--CTTCCHHHHHHHHHHHHC---CCEEEEEEEECTTSCEEEEEEECSSSCHHHHHHHH
T ss_pred CEEEEEE--cCCCCHHHHHHHHHHHhC---CceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHHhh
Confidence 4455554 467899999999998 55 35555533 334456999999887777766655
No 422
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=31.26 E-value=81 Score=26.17 Aligned_cols=56 Identities=13% Similarity=0.251 Sum_probs=38.5
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHh-cCCCCCCeeEEEe---eCCCceEEEEeCChhHHHHHHHHh
Q psy5142 275 GALLKISDIKEPVSREDIREVLEK-VQTDDQEIVFIEF---NVGEPTAFVRYKKENNAEAVLKAL 335 (410)
Q Consensus 275 g~~l~v~nL~~~~t~edLk~~F~~-~G~~~~~V~~V~~---~~g~~~afV~F~~~e~A~~Al~~l 335 (410)
+..+|+. +...+..+|++.+++ |+ +.|..|.. +.|...|||++....+|......+
T Consensus 80 N~~vF~V--d~~AnK~qIK~AVEklf~---VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnki 139 (142)
T 3u5e_X 80 NILVFQV--SMKANKYQIKKAVKELYE---VDVLKVNTLVRPNGTKKAYVRLTADYDALDIANRI 139 (142)
T ss_dssp CEEEEEE--CTTCCHHHHHHHHHHHHS---CCEEEEEEEECTTSCEEEEEEECTTCCHHHHHHHH
T ss_pred CEEEEEE--cCCCCHHHHHHHHHHHhC---CceeEEEeeEcCCCceEEEEEeCCCCcHHHHHHhh
Confidence 3455554 467899999999998 55 35555533 334456999999887777766555
No 423
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=30.34 E-value=1.2e+02 Score=19.95 Aligned_cols=55 Identities=22% Similarity=0.216 Sum_probs=40.0
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCChhHHHHHHHHh
Q psy5142 277 LLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKAL 335 (410)
Q Consensus 277 ~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~e~A~~Al~~l 335 (410)
.+.|.|+.-......|...+.... .|..+.+......+.|.|.........+..+
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~----gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i 57 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVP----GVQSALVSYPKGTAQLAIVPGTSPDALTAAV 57 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHST----TEEEEEEETTTTEEEEEECTTSCHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHHcCC----CeeEEEEEccCCEEEEEECCCCCHHHHHHHH
Confidence 366778766556788999999988 7888888887788999998643444444444
No 424
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=27.82 E-value=1e+02 Score=24.57 Aligned_cols=74 Identities=14% Similarity=0.240 Sum_probs=48.3
Q ss_pred eEEEEeCCCCCCCHHHHHHH---HHhcCCCCCCeeEEEeeCCCceEEEEeC--ChhHHHHHHHHhc------CC--CeEE
Q psy5142 276 ALLKISDIKEPVSREDIREV---LEKVQTDDQEIVFIEFNVGEPTAFVRYK--KENNAEAVLKALG------SK--EIVI 342 (410)
Q Consensus 276 ~~l~v~nL~~~~t~edLk~~---F~~~G~~~~~V~~V~~~~g~~~afV~F~--~~e~A~~Al~~l~------~~--~~~i 342 (410)
..+.|.|+|+.+..+--++. -..|. +.|.|--+..|.+.--|+|. +-+.-++|++.|- .+ .+++
T Consensus 43 l~i~itgvpeqvrkelakeaerl~~efn---i~v~y~imgsgsgvm~i~f~gddlea~ekalkemirqarkfagtvtytl 119 (170)
T 4hhu_A 43 LVIVITGVPEQVRKELAKEAERLKAEFN---INVQYQIMGSGSGVMVIVFEGDDLEALEKALKEMIRQARKFAGTVTYTL 119 (170)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHHHHHHT---CEEEEEEECTTCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHHhcc---eEEEEEEEeCCceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceEEEEE
Confidence 56788999988755433332 22344 35677666677777778886 4577788888871 11 2577
Q ss_pred cCeEEEEEec
Q psy5142 343 KDVKVSIEVV 352 (410)
Q Consensus 343 ~g~~v~v~~l 352 (410)
+|..+.+.+-
T Consensus 120 ~gn~l~i~it 129 (170)
T 4hhu_A 120 SGNRLVIVIT 129 (170)
T ss_dssp CSSEEEEEEE
T ss_pred eCCEEEEEEe
Confidence 8888877764
No 425
>2czv_C Ribonuclease P protein component 2; RNA binding protein, RNA recognition motif, protein-protein complex, hydrolase; HET: BOG; 2.00A {Pyrococcus horikoshii} SCOP: d.58.59.1
Probab=25.59 E-value=81 Score=25.10 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCCh--hHHHHHHHHhcCCCeEEcCeEEEEEec
Q psy5142 290 EDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKE--NNAEAVLKALGSKEIVIKDVKVSIEVV 352 (410)
Q Consensus 290 edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~--e~A~~Al~~l~~~~~~i~g~~v~v~~l 352 (410)
+.+.++|+.+|.-.+.+.-+.+......|.||.... +.+..|+..+ ..++|.++.++++
T Consensus 40 ~av~~~fGd~G~~~~~~~v~~f~~~t~~~IiRc~r~~~~~v~aaLtli----~~i~~~~~~~~vl 100 (120)
T 2czv_C 40 KSSLEVLGETGTAIVKPWLIKFDPNTKTGIVRSDREYVEYLRFALMLV----SEFNGKRLIIRTL 100 (120)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEETTTTEEEEEEEGGGHHHHHHHHHTC----CEETTEECEEEEE
T ss_pred HHHHHhcCcchhhccCceEEEEcCCCCEEEEEeCchhHHHHHHHHHhH----hhCCCEEEEEEEe
Confidence 334446666661101122345666778899998753 4556666665 4678887766655
No 426
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=25.30 E-value=43 Score=31.13 Aligned_cols=12 Identities=8% Similarity=0.177 Sum_probs=7.1
Q ss_pred HHHHHHHHHhcC
Q psy5142 289 REDIREVLEKVQ 300 (410)
Q Consensus 289 ~edLk~~F~~~G 300 (410)
.--|.+.+..+.
T Consensus 118 P~~V~e~Y~~C~ 129 (279)
T 3p8c_D 118 PIPLQETYDVCE 129 (279)
T ss_dssp CHHHHHHHHHSB
T ss_pred CHHHHHHHHhcC
Confidence 345666666665
No 427
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=24.76 E-value=44 Score=31.03 Aligned_cols=13 Identities=31% Similarity=0.409 Sum_probs=0.0
Q ss_pred CCCCCCCCCcccc
Q psy5142 392 GTKRSRGGNFESN 404 (410)
Q Consensus 392 G~~~~rgg~~~~~ 404 (410)
||.||.|++++.+
T Consensus 193 ~~~~~~~~~~~~~ 205 (279)
T 3p8c_D 193 GGSGGSGGSGGSK 205 (279)
T ss_dssp -------------
T ss_pred CCCCCCCCCCccc
Confidence 3344455555543
No 428
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=24.24 E-value=77 Score=24.83 Aligned_cols=33 Identities=15% Similarity=0.319 Sum_probs=28.2
Q ss_pred ceEEEEEcccCcccccccccccEEEEEecCHHHHHHHHHhcC
Q psy5142 149 KITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENK 190 (410)
Q Consensus 149 ~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e~A~~Al~~~~ 190 (410)
.|.+|..+. ..+||.|||=..+.++..|+....
T Consensus 40 ~I~Si~~~~---------~lkGyIyVEA~~~~~V~~ai~gi~ 72 (106)
T 3h7h_B 40 QIKSVVAPE---------HVKGYIYVEAYKQTHVKQAIEGVG 72 (106)
T ss_dssp CCCEEEECT---------TCCSEEEEEESSHHHHHHHHTTCG
T ss_pred ceEEEEecC---------CCceEEEEEeCCHHHHHHHHhccc
Confidence 577877663 579999999999999999998876
No 429
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=22.86 E-value=1.2e+02 Score=26.01 Aligned_cols=50 Identities=14% Similarity=0.074 Sum_probs=34.9
Q ss_pred eeeEeecCCCC---------CCHHHHHHHH--hhccCCCCceEEEEEcccCcccccccccccEEEEEecCHH
Q psy5142 120 QSLYVKYIPVD---------ATLDDIKDFF--KKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKE 180 (410)
Q Consensus 120 rtv~V~~lp~~---------~t~~~L~~~F--~~~~~~~G~I~~v~l~~~~~~~~~~~~~kG~afVeF~~~e 180 (410)
-+++|-|+|.. ..-.+|++.| +.| .++. |+...... .+.|+|.|+|...-
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F----~p~k-v~~l~~~~------Gh~g~aIv~F~~dw 73 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGF----NPTR-VRPLWNYL------GHSGTAIVEFNKDW 73 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTC----CCSE-EEEEECSS------BEEEEEEEECCSSH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCC----CCce-eEecccCC------CCceeEEEEecCCh
Confidence 47778888862 3457899977 999 6654 44444333 47899999999743
No 430
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=22.80 E-value=86 Score=26.29 Aligned_cols=56 Identities=16% Similarity=0.252 Sum_probs=37.7
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHh-cCCCCCCeeEEEe---eCCCceEEEEeCChhHHHHHHHHh
Q psy5142 275 GALLKISDIKEPVSREDIREVLEK-VQTDDQEIVFIEF---NVGEPTAFVRYKKENNAEAVLKAL 335 (410)
Q Consensus 275 g~~l~v~nL~~~~t~edLk~~F~~-~G~~~~~V~~V~~---~~g~~~afV~F~~~e~A~~Al~~l 335 (410)
+..+|+. +...+..+|++.+++ |+ +.|..|.. +.|...|||++....+|......+
T Consensus 90 N~~vF~V--d~~AnK~qIK~AVEklf~---VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnki 149 (152)
T 3iz5_X 90 NTLVFIV--DLKADKKKIKAAVKKMYD---IQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANKI 149 (152)
T ss_dssp SEEEEEE--CSSCCSHHHHHHHHHHHT---CCEEEEEEEECTTSSEEEEEEECTTSCHHHHHGGG
T ss_pred CEEEEEE--cCCCCHHHHHHHHHHHhC---CcceEEEeeEcCCCceEEEEEcCCCCcHHHHHHhh
Confidence 4455554 467899999999998 45 35555533 334456999999887776655444
No 431
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=21.74 E-value=1.7e+02 Score=18.74 Aligned_cols=45 Identities=13% Similarity=0.355 Sum_probs=33.9
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCCCCCeeEEEeeCCCceEEEEeCCh
Q psy5142 277 LLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKE 325 (410)
Q Consensus 277 ~l~v~nL~~~~t~edLk~~F~~~G~~~~~V~~V~~~~g~~~afV~F~~~ 325 (410)
.+.|.|+.-......|+..+.... .|..+.+........|.|...
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~----gv~~~~v~~~~~~~~v~~~~~ 48 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIE----GVSFIDVSVEKKSVVVEFDAP 48 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSS----SEEEEEEETTTTEEEEEECTT
T ss_pred EEEECCcccHHHHHHHHHHHhcCC----CceEEEEEcCCCEEEEEECCC
Confidence 355666665555678889998887 788888887778899998743
No 432
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=21.45 E-value=1.5e+02 Score=24.86 Aligned_cols=55 Identities=20% Similarity=0.358 Sum_probs=37.0
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHh-cCCCCCCeeEEEe---eCCCceEEEEeCChhHHHHHHHHh
Q psy5142 276 ALLKISDIKEPVSREDIREVLEK-VQTDDQEIVFIEF---NVGEPTAFVRYKKENNAEAVLKAL 335 (410)
Q Consensus 276 ~~l~v~nL~~~~t~edLk~~F~~-~G~~~~~V~~V~~---~~g~~~afV~F~~~e~A~~Al~~l 335 (410)
..+|+ ++...+..+|++.+++ |+ +.|..|.. ..|...|||++....+|-.....+
T Consensus 95 ~yvF~--Vd~~AnK~qIK~AVEklf~---VkV~kVNTl~~~~~~KKAiVtL~~g~~aid~~~ki 153 (156)
T 2zkr_s 95 TLVFI--VDVKANKHQIKQAVKKLYD---IDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKI 153 (156)
T ss_dssp EEEEE--ECTTCCHHHHHHHHHHHHC---CCEEEEEEEECSSSCEEEEEEECTTSCHHHHHHHC
T ss_pred cEEEE--EECCCCHHHHHHHHHHHhC---CcceEEEeeEcCCCceEEEEEECCCCcHHHHHHhc
Confidence 44555 4567899999999998 55 35555543 234456999998877666555544
No 433
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=26.40 E-value=21 Score=31.64 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=13.3
Q ss_pred CCCCCCCCCCCCCCCCccccc
Q psy5142 385 FGKKGPRGTKRSRGGNFESNK 405 (410)
Q Consensus 385 ~~grg~~G~~~~rgg~~~~~~ 405 (410)
.||.||.|+.||.||.++|--
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~ 202 (215)
T 2l6f_A 182 SGGSGGSGGSGGSGGSGGSSA 202 (215)
Confidence 345555677777777777643
Done!