Your job contains 1 sequence.
>psy5142
MAETDSSATNGNSGAEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTT
MLKFARLAKMTTEAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQ
SLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKE
NAEKFLNENKDKNLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKK
QEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGALLKISDIKEPVSREDIREVLEKVQ
TDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVTGEEEQTV
LDRMKIDIFKRRQKLMNEKKSGRKFGKKGPRGTKRSRGGNFESNKKAKVE
The BLAST search returned 10 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy5142
(410 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
MGI|MGI:98423 - symbol:Ssb "Sjogren syndrome antigen B" s... 395 6.8e-49 2
UNIPROTKB|Q66HM7 - symbol:Ssb "Sjogren syndrome antigen B... 391 2.9e-48 2
RGD|620804 - symbol:Ssb "Sjogren syndrome antigen B" spec... 391 4.7e-48 2
RGD|1592944 - symbol:LOC680385 "similar to Sjogren syndro... 396 6.0e-48 2
UNIPROTKB|P05455 - symbol:SSB "Lupus La protein" species:... 408 4.3e-38 1
UNIPROTKB|E9PFH8 - symbol:SSB "Lupus La protein" species:... 408 4.3e-38 1
UNIPROTKB|E2RH09 - symbol:SSB "Uncharacterized protein" s... 407 5.5e-38 1
WB|WBGene00016653 - symbol:C44E4.4 species:6239 "Caenorha... 321 9.3e-38 2
UNIPROTKB|F1S1V1 - symbol:SSB "Uncharacterized protein" s... 398 4.9e-37 1
UNIPROTKB|P10881 - symbol:SSB "Lupus La protein homolog" ... 397 6.3e-37 1
UNIPROTKB|F1NYE7 - symbol:SSB "Uncharacterized protein" s... 396 8.0e-37 1
UNIPROTKB|F1P301 - symbol:SSB "Uncharacterized protein" s... 396 8.0e-37 1
UNIPROTKB|E7ERC4 - symbol:SSB "Lupus La protein" species:... 392 2.1e-36 1
ZFIN|ZDB-GENE-030131-223 - symbol:ssb "Sjogren syndrome a... 390 3.5e-36 1
FB|FBgn0011638 - symbol:La "La autoantigen-like" species:... 368 7.4e-34 1
UNIPROTKB|F1MAB1 - symbol:Ssb "Lupus La protein homolog" ... 343 3.3e-31 1
UNIPROTKB|Q5ZKS1 - symbol:SSB "Uncharacterized protein" s... 327 1.6e-29 1
UNIPROTKB|E9PFL9 - symbol:SSB "Lupus La protein" species:... 288 2.2e-25 1
UNIPROTKB|E9PGX9 - symbol:SSB "Lupus La protein" species:... 262 2.1e-22 1
UNIPROTKB|E1BQG3 - symbol:LARP7 "Uncharacterized protein"... 205 6.9e-22 3
POMBASE|SPAC57A10.10c - symbol:sla1 "La protein homolog" ... 254 1.7e-21 1
DICTYBASE|DDB_G0281763 - symbol:DDB_G0281763 "Lupus La pr... 255 1.1e-20 1
MGI|MGI:107634 - symbol:Larp7 "La ribonucleoprotein domai... 207 1.6e-20 2
RGD|1592474 - symbol:Larp7 "La ribonucleoprotein domain f... 204 1.7e-20 2
UNIPROTKB|Q5XI01 - symbol:Larp7 "La-related protein 7" sp... 204 1.7e-20 2
UNIPROTKB|F1S150 - symbol:LARP7 "Uncharacterized protein"... 199 9.0e-20 2
UNIPROTKB|F1MR14 - symbol:F1MR14 "Uncharacterized protein... 205 1.2e-19 2
UNIPROTKB|Q4G0J3 - symbol:LARP7 "La-related protein 7" sp... 211 2.6e-19 2
ZFIN|ZDB-GENE-030131-6896 - symbol:larp7 "La ribonucleopr... 207 2.2e-18 2
CGD|CAL0004304 - symbol:orf19.2795 species:5476 "Candida ... 224 8.6e-17 1
UNIPROTKB|F1NJ86 - symbol:LARP7 "Uncharacterized protein"... 205 5.5e-16 1
UNIPROTKB|D6RFF0 - symbol:LARP7 "La-related protein 7" sp... 211 1.4e-15 1
DICTYBASE|DDB_G0281835 - symbol:DDB_G0281835 species:4468... 213 6.6e-15 1
UNIPROTKB|E2QW27 - symbol:LARP7 "Uncharacterized protein"... 210 4.6e-14 1
TAIR|locus:2017809 - symbol:La2 "La protein 2" species:37... 199 3.3e-13 1
UNIPROTKB|I3LNK9 - symbol:I3LNK9 "Uncharacterized protein... 199 7.8e-13 1
SGD|S000002209 - symbol:LHP1 "RNA binding protein require... 182 5.2e-12 1
TAIR|locus:2170478 - symbol:LARP6a "La related protein 6a... 185 1.5e-11 1
UNIPROTKB|D6RAF3 - symbol:LARP7 "La-related protein 7" sp... 164 1.7e-11 1
UNIPROTKB|D6RF49 - symbol:LARP7 "La-related protein 7" sp... 164 1.7e-11 1
FB|FBgn0033936 - symbol:CG17386 species:7227 "Drosophila ... 166 5.3e-10 2
UNIPROTKB|E1BVY8 - symbol:LOC420093 "Uncharacterized prot... 149 7.5e-10 1
TAIR|locus:2125702 - symbol:La1 "La protein 1" species:37... 169 1.0e-09 1
FB|FBgn0260771 - symbol:Larp7 "La related protein 7" spec... 171 1.1e-09 1
ASPGD|ASPL0000060980 - symbol:AN1045 species:162425 "Emer... 157 2.1e-08 2
TAIR|locus:2156912 - symbol:LARP1b "AT5G66100" species:37... 148 1.1e-07 2
UNIPROTKB|F1P339 - symbol:LARP1 "Uncharacterized protein"... 140 1.2e-06 2
UNIPROTKB|F1MBD0 - symbol:LARP6 "Uncharacterized protein"... 141 1.3e-06 1
UNIPROTKB|Q9BRS8 - symbol:LARP6 "La-related protein 6" sp... 141 1.7e-06 1
UNIPROTKB|F1SIT3 - symbol:LARP6 "Uncharacterized protein"... 141 1.7e-06 1
UNIPROTKB|F1NWE6 - symbol:LARP6 "Uncharacterized protein"... 143 1.9e-06 2
UNIPROTKB|Q6PKG0 - symbol:LARP1 "La-related protein 1" sp... 146 3.3e-06 2
UNIPROTKB|G3V0E9 - symbol:LARP1B "La-related protein 1B" ... 136 3.3e-06 1
ZFIN|ZDB-GENE-030131-6403 - symbol:larp6 "La ribonucleopr... 138 3.5e-06 1
UNIPROTKB|F1PKV9 - symbol:LARP6 "Uncharacterized protein"... 137 3.6e-06 1
MGI|MGI:1914807 - symbol:Larp6 "La ribonucleoprotein doma... 137 4.6e-06 1
RGD|1308414 - symbol:Larp6 "La ribonucleoprotein domain f... 137 4.6e-06 1
UNIPROTKB|F1MZU1 - symbol:LARP1 "Uncharacterized protein"... 144 4.9e-06 2
UNIPROTKB|G3XAJ5 - symbol:LARP1B "La-related protein 1B" ... 136 6.5e-06 1
MGI|MGI:1890165 - symbol:Larp1 "La ribonucleoprotein doma... 143 8.5e-06 2
RGD|1306683 - symbol:Larp1 "La ribonucleoprotein domain f... 142 9.7e-06 2
UNIPROTKB|Q659C4 - symbol:LARP1B "La-related protein 1B" ... 136 1.4e-05 1
DICTYBASE|DDB_G0274493 - symbol:lig1 "DNA ligase I" speci... 137 1.5e-05 1
TAIR|locus:2051734 - symbol:LARP6b "AT2G43970" species:37... 125 2.1e-05 2
DICTYBASE|DDB_G0271058 - symbol:vilC "villin-like protein... 133 5.5e-05 1
DICTYBASE|DDB_G0295683 - symbol:DDB_G0295683 "cofilin/tro... 133 5.7e-05 1
TAIR|locus:2089508 - symbol:LARP6c "La related protein 6c... 126 6.7e-05 1
UNIPROTKB|Q14789 - symbol:GOLGB1 "Golgin subfamily B memb... 134 9.8e-05 1
GENEDB_PFALCIPARUM|PF11_0242 - symbol:PF11_0242 "protein ... 132 0.00011 1
UNIPROTKB|Q8IID2 - symbol:PF11_0242 "Calcium-dependent pr... 132 0.00011 1
DICTYBASE|DDB_G0280121 - symbol:DDB_G0280121 "C2H2-type z... 120 0.00014 1
MGI|MGI:107933 - symbol:Mns1 "meiosis-specific nuclear st... 123 0.00016 1
CGD|CAL0002378 - symbol:SBP1 species:5476 "Candida albica... 119 0.00016 1
DICTYBASE|DDB_G0289333 - symbol:DDB_G0289333 species:4468... 124 0.00017 1
FB|FBgn0035424 - symbol:CG11505 species:7227 "Drosophila ... 138 0.00018 3
WB|WBGene00020097 - symbol:larp-1 species:6239 "Caenorhab... 127 0.00018 1
ZFIN|ZDB-GENE-041008-244 - symbol:zgc:162969 "zgc:162969"... 122 0.00019 1
FB|FBgn0261618 - symbol:larp "La related protein" species... 128 0.00021 1
DICTYBASE|DDB_G0288067 - symbol:mf12 species:44689 "Dicty... 127 0.00025 1
UNIPROTKB|Q96J85 - symbol:LARP4 "La-related protein 4" sp... 119 0.00026 3
UNIPROTKB|H9KZD5 - symbol:LARP4 "Uncharacterized protein"... 123 0.00029 1
GENEDB_PFALCIPARUM|PFF0505c - symbol:PFF0505c "hypothetic... 123 0.00039 1
UNIPROTKB|C6KSU9 - symbol:PFF0505c "Putative uncharacteri... 123 0.00039 1
DICTYBASE|DDB_G0269962 - symbol:DDB_G0269962 species:4468... 122 0.00040 1
DICTYBASE|DDB_G0270444 - symbol:DDB_G0270444 "protein kin... 124 0.00046 1
UNIPROTKB|F1MHD9 - symbol:LARP4 "Uncharacterized protein"... 120 0.00048 1
TAIR|locus:2098443 - symbol:AT3G28770 "AT3G28770" species... 137 0.00053 2
UNIPROTKB|E9PDG5 - symbol:LARP4 "La-related protein 4" sp... 119 0.00058 3
DICTYBASE|DDB_G0270880 - symbol:gflC "PHD zinc finger-con... 124 0.00060 1
UNIPROTKB|G3XAA8 - symbol:LARP4 "La-related protein 4" sp... 119 0.00066 1
UNIPROTKB|Q8IIG7 - symbol:PF11_0207 "Uncharacterized prot... 121 0.00074 1
DICTYBASE|DDB_G0302588 - symbol:DDB_G0302588 "RanBP2-type... 138 0.00078 2
TAIR|locus:2125334 - symbol:LARP1c "La related protein 1c... 117 0.00081 1
GENEDB_PFALCIPARUM|PF14_0088 - symbol:PF14_0088 "hypothet... 121 0.00085 1
UNIPROTKB|Q8IM05 - symbol:PF14_0088 "Aldo/keto reductase,... 121 0.00085 1
GENEDB_PFALCIPARUM|PF11_0213 - symbol:PF11_0213 "hypothet... 124 0.00092 1
UNIPROTKB|Q8IIG1 - symbol:PF11_0213 "Uncharacterized prot... 124 0.00092 1
>MGI|MGI:98423 [details] [associations]
symbol:Ssb "Sjogren syndrome antigen B" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 MGI:MGI:98423 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 CTD:6741 HOGENOM:HOG000006947
HOVERGEN:HBG001407 OMA:ENAEMKS OrthoDB:EOG4C2HB3 EMBL:L00993
EMBL:BC003820 EMBL:Y07951 IPI:IPI00134300 RefSeq:NP_001103615.1
RefSeq:NP_033304.1 UniGene:Mm.10508 ProteinModelPortal:P32067
SMR:P32067 DIP:DIP-37706N IntAct:P32067 STRING:P32067
PhosphoSite:P32067 PaxDb:P32067 PRIDE:P32067
Ensembl:ENSMUST00000090852 Ensembl:ENSMUST00000166411 GeneID:20823
KEGG:mmu:20823 InParanoid:P32067 ChiTaRS:SSB NextBio:299565
Bgee:P32067 CleanEx:MM_SSB Genevestigator:P32067
GermOnline:ENSMUSG00000068882 Uniprot:P32067
Length = 415
Score = 395 (144.1 bits), Expect = 6.8e-49, Sum P(2) = 6.8e-49
Identities = 94/218 (43%), Positives = 131/218 (60%)
Query: 13 SGAEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTT 72
+G +++ LE +I QIEYYF D NL RDKFL+ +IK D+GWV L TM+KF RL ++TT
Sbjct: 4 NGDNEKMTALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLTT 63
Query: 73 EAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDAT 132
+ VIV AL KS +KL+EV+ D TKIRR+P + LP ++ D+ +S+Y+K P DAT
Sbjct: 64 DFNVIVQALSKSKAKLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTDAT 123
Query: 133 LDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLN----E 188
LDDIK++ + +I NI MR K FKGSIF FD+ ++A+KF+ +
Sbjct: 124 LDDIKEWL----DDKGQILNIQMRR-----TLHKTFKGSIFAVFDSIQSAKKFVEIPGQK 174
Query: 189 NKDKNLK--FNENCEHKNAEKFLNENKDKNLKFNENCE 224
KD NL F E+ K E+ + LK + E
Sbjct: 175 YKDTNLLILFKEDYFAKKNEERKQSKVEAKLKAKQEHE 212
Score = 132 (51.5 bits), Expect = 6.8e-49, Sum P(2) = 6.8e-49
Identities = 47/171 (27%), Positives = 90/171 (52%)
Query: 226 SLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTE-GSKQV-VLELPTGALLKIS-D 282
+LLI ++++Y +K +E + + ++K + + EG + GS + LE G LLK S D
Sbjct: 179 NLLILFKEDYFAKKNEERKQSKVEAKLKAKQEHEGRHKPGSTETRALEGKMGCLLKFSGD 238
Query: 283 IKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKE--I 340
+ + RED+ + ++ EI +++F G + +K E EA+ KA + +
Sbjct: 239 LDDQTCREDLHFLF----SNHGEIKWVDFARGAKEGIILFK-EKAKEALEKARNANNGNL 293
Query: 341 VIKDVKVSIEVVTGEEEQTVLDRMKIDIFKRRQKLMNEKKSGRKFGKKGPR 391
++++ KV+ +V+ G E+ L ++ D +Q+ +N+ KS K G G R
Sbjct: 294 LLRNKKVTWKVLEGHAEKEALKKITDD----QQESLNKWKS--KGGHAGGR 338
>UNIPROTKB|Q66HM7 [details] [associations]
symbol:Ssb "Sjogren syndrome antigen B" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
RGD:620804 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 EMBL:CH473949 InterPro:IPR006630 PROSITE:PS50961
KO:K11090 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 CTD:6741
HOVERGEN:HBG001407 OMA:ENAEMKS UniGene:Rn.24494 EMBL:BC081780
IPI:IPI00471902 RefSeq:NP_112381.2 SMR:Q66HM7 STRING:Q66HM7
Ensembl:ENSRNOT00000011174 GeneID:81783 KEGG:rno:81783
InParanoid:Q66HM7 NextBio:615635 Genevestigator:Q66HM7
Uniprot:Q66HM7
Length = 415
Score = 391 (142.7 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
Identities = 93/218 (42%), Positives = 131/218 (60%)
Query: 13 SGAEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTT 72
+G +++ LE +I QIEYYF D NL RDKFL+ +IK D+GWV L TM+KF RL ++TT
Sbjct: 4 NGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLTT 63
Query: 73 EAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDAT 132
+ VIV AL KS + L+EV+ D TKIRR+P + LP ++ D+ +S+Y+K P DAT
Sbjct: 64 DFNVIVQALSKSKANLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTDAT 123
Query: 133 LDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLN----E 188
LDDIK++ + +I NI MR K FKGSIF FD+ ++A+KF++ +
Sbjct: 124 LDDIKEWL----DDKGQILNIQMRR-----TLHKTFKGSIFAVFDSIQSAKKFVDTPGQK 174
Query: 189 NKDKNLK--FNENCEHKNAEKFLNENKDKNLKFNENCE 224
KD NL F E+ K E+ + LK + E
Sbjct: 175 YKDTNLLILFKEDYFAKKNEERKQSKVEAKLKAKQEHE 212
Score = 130 (50.8 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
Identities = 51/189 (26%), Positives = 98/189 (51%)
Query: 226 SLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTE-GSKQV-VLELPTGALLKIS-D 282
+LLI ++++Y +K +E + + ++K + + EG + GS + LE G LLK S D
Sbjct: 179 NLLILFKEDYFAKKNEERKQSKVEAKLKAKQEHEGRHKPGSTETRALEGKMGCLLKFSGD 238
Query: 283 IKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKE--I 340
+ + RED+ + ++ EI +I+F G + +K E +A+ KA + +
Sbjct: 239 LDDQTCREDLHFLF----SNHGEIKWIDFVRGAKEGIILFK-EKAKDALEKARSANNGNL 293
Query: 341 VIKDVKVSIEVVTGEEEQTVLDRMKIDIFKRRQKLMNEKKSGRKFGKKGPRGTKRSRGGN 400
++++ KV+ +V+ G E+ D MK I +Q+ +N+ KS KG +R +G +
Sbjct: 294 LLRNKKVTWKVLEGHAEK---DAMK-KITDDQQESLNKWKS------KGGHAARRFKGSH 343
Query: 401 -FESNKKAK 408
F + ++ K
Sbjct: 344 VFTAARRFK 352
>RGD|620804 [details] [associations]
symbol:Ssb "Sjogren syndrome antigen B" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISO] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IMP] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 RGD:620804 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0030529 GO:GO:0008033
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 InterPro:IPR014886 Pfam:PF08777 HOGENOM:HOG000006947
HOVERGEN:HBG001407 OrthoDB:EOG4C2HB3 EMBL:X67859 IPI:IPI00212219
PIR:JC1494 UniGene:Rn.24494 ProteinModelPortal:P38656 SMR:P38656
DIP:DIP-46500N STRING:P38656 PhosphoSite:P38656 PRIDE:P38656
UCSC:RGD:620804 InParanoid:P38656 ArrayExpress:P38656
Genevestigator:P38656 GermOnline:ENSRNOG00000007998 Uniprot:P38656
Length = 415
Score = 391 (142.7 bits), Expect = 4.7e-48, Sum P(2) = 4.7e-48
Identities = 93/218 (42%), Positives = 131/218 (60%)
Query: 13 SGAEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTT 72
+G +++ LE +I QIEYYF D NL RDKFL+ +IK D+GWV L TM+KF RL ++TT
Sbjct: 4 NGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLTT 63
Query: 73 EAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDAT 132
+ VIV AL KS + L+EV+ D TKIRR+P + LP ++ D+ +S+Y+K P DAT
Sbjct: 64 DFNVIVQALSKSKANLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTDAT 123
Query: 133 LDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLN----E 188
LDDIK++ + +I NI MR K FKGSIF FD+ ++A+KF++ +
Sbjct: 124 LDDIKEWL----DDKGQILNIQMRR-----TLHKTFKGSIFAVFDSIQSAKKFVDTPGQK 174
Query: 189 NKDKNLK--FNENCEHKNAEKFLNENKDKNLKFNENCE 224
KD NL F E+ K E+ + LK + E
Sbjct: 175 YKDTNLLILFKEDYFAKKNEERKQSKVEAKLKAKQEHE 212
Score = 128 (50.1 bits), Expect = 4.7e-48, Sum P(2) = 4.7e-48
Identities = 51/189 (26%), Positives = 97/189 (51%)
Query: 226 SLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTE-GSKQV-VLELPTGALLKIS-D 282
+LLI ++++Y +K +E + + ++K + + EG + GS + LE G LLK S D
Sbjct: 179 NLLILFKEDYFAKKNEERKQSKVEAKLKAKQEHEGRHKPGSTETRALEGKMGCLLKFSGD 238
Query: 283 IKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKE--I 340
+ + RED + ++ EI +I+F G + +K E +A+ KA + +
Sbjct: 239 LDDQTCREDFHFLF----SNHGEIKWIDFVRGAKEGIILFK-EKAKDALEKARSANNGNL 293
Query: 341 VIKDVKVSIEVVTGEEEQTVLDRMKIDIFKRRQKLMNEKKSGRKFGKKGPRGTKRSRGGN 400
++++ KV+ +V+ G E+ D MK I +Q+ +N+ KS KG +R +G +
Sbjct: 294 LLRNKKVTWKVLEGHAEK---DAMK-KITDDQQESLNKWKS------KGGHAARRFKGSH 343
Query: 401 -FESNKKAK 408
F + ++ K
Sbjct: 344 VFTAARRFK 352
>RGD|1592944 [details] [associations]
symbol:LOC680385 "similar to Sjogren syndrome antigen B"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
RGD:1592944 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 InterPro:IPR014886 Pfam:PF08777
GeneTree:ENSGT00530000063464 OrthoDB:EOG4C2HB3 IPI:IPI00767397
RefSeq:XP_001058361.1 RefSeq:XP_002726506.1 PRIDE:D3ZLH9
Ensembl:ENSRNOT00000015427 GeneID:680385 KEGG:rno:680385
UCSC:RGD:1592944 OMA:ATESEKC NextBio:718589 Uniprot:D3ZLH9
Length = 402
Score = 396 (144.5 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
Identities = 95/218 (43%), Positives = 134/218 (61%)
Query: 13 SGAEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTT 72
+G +++ LE +I QIEYYF D NL +DKFL+ +IK D+GWV L TM+KF RL ++TT
Sbjct: 4 NGDNEKMAALEAKICHQIEYYFGDFNLPQDKFLKEQIKLDEGWVSLETMIKFNRLNRLTT 63
Query: 73 EAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDAT 132
+ VIV AL KS +KL+EV+ D TKIRR+P + LP ++ D+ +S+Y+K P DAT
Sbjct: 64 DFNVIVQALSKSKAKLMEVSADKTKIRRSPSRPLPEVMDEYKNDVKNRSVYIKGFPTDAT 123
Query: 133 LDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLN----E 188
LDDIK++ + +I NI MR KL K FKGSIF FD+ ++A+KF++ +
Sbjct: 124 LDDIKEWL----DDKGQILNIQMRR---KL--HKTFKGSIFAVFDSIQSAKKFVDTPGQK 174
Query: 189 NKDKNLK--FNENCEHKNAEKFLNENKDKNLKFNENCE 224
KD NL F E+ K E+ + LK + E
Sbjct: 175 YKDTNLLILFKEDYFAKKNEERKQSKVEAKLKAKQEHE 212
Score = 122 (48.0 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
Identities = 49/183 (26%), Positives = 96/183 (52%)
Query: 226 SLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTE-GSKQV-VLELPTGALLKIS-D 282
+LLI ++++Y +K +E + + ++K + + EG + GS + LE G LLK S D
Sbjct: 179 NLLILFKEDYFAKKNEERKQSKVEAKLKAKQEHEGRHKPGSTETRALEGKMGCLLKFSGD 238
Query: 283 IKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKE--I 340
+ + RED+ + ++ EI +I+F G + +K E + + KA + +
Sbjct: 239 LDDQTCREDLHFLF----SNHGEIKWIDFVRGAKEGIILFK-EKAKDTLEKARSANNGNL 293
Query: 341 VIKDVKVSIEVVTGEEEQTVLDRMKIDIFKRRQKLMNEKKS--G--RKFGKKGPRGTKRS 396
++++ K++ +V+ G E+ D MK I +Q+ +N+ KS G R+F +G +G + +
Sbjct: 294 LLRNKKMTWKVLEGHAEK---DAMK-KITDDQQESLNKWKSKGGHVRRFKGRG-KGNRPA 348
Query: 397 RGG 399
G
Sbjct: 349 YAG 351
>UNIPROTKB|P05455 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000049 "tRNA binding" evidence=TAS] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0006400 "tRNA modification"
evidence=TAS] [GO:0008334 "histone mRNA metabolic process"
evidence=TAS] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:CH471058 GO:GO:0030529 GO:GO:0006400 GO:GO:0000049
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 KO:K11090
Pfam:PF05383 SMART:SM00715 InterPro:IPR014886 Pfam:PF08777 CTD:6741
HOGENOM:HOG000006947 HOVERGEN:HBG001407 OMA:ENAEMKS EMBL:X13697
EMBL:J04205 EMBL:BT009862 EMBL:AB451228 EMBL:AC009967 EMBL:BC001289
EMBL:BC020818 EMBL:M20328 IPI:IPI00009032 PIR:A31888
RefSeq:NP_003133.1 UniGene:Hs.632535 PDB:1OWX PDB:1S79 PDB:1S7A
PDB:1YTY PDB:1ZH5 PDB:2VOD PDB:2VON PDB:2VOO PDB:2VOP PDBsum:1OWX
PDBsum:1S79 PDBsum:1S7A PDBsum:1YTY PDBsum:1ZH5 PDBsum:2VOD
PDBsum:2VON PDBsum:2VOO PDBsum:2VOP DisProt:DP00229
ProteinModelPortal:P05455 SMR:P05455 DIP:DIP-29750N IntAct:P05455
MINT:MINT-5002383 STRING:P05455 PhosphoSite:P05455 DMDM:125985
PaxDb:P05455 PeptideAtlas:P05455 PRIDE:P05455 DNASU:6741
Ensembl:ENST00000260956 Ensembl:ENST00000409333 GeneID:6741
KEGG:hsa:6741 UCSC:uc002ufk.3 GeneCards:GC02P170619 HGNC:HGNC:11316
HPA:CAB004643 HPA:HPA012385 HPA:HPA017287 MIM:109090
neXtProt:NX_P05455 PharmGKB:PA36140 InParanoid:P05455
OrthoDB:EOG4C2HB3 PhylomeDB:P05455 EvolutionaryTrace:P05455
GenomeRNAi:6741 NextBio:26296 PMAP-CutDB:P05455 ArrayExpress:P05455
Bgee:P05455 CleanEx:HS_SSB Genevestigator:P05455
GermOnline:ENSG00000138385 GO:GO:0008334 Uniprot:P05455
Length = 408
Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
Identities = 98/239 (41%), Positives = 147/239 (61%)
Query: 13 SGAEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTT 72
+G +++ LE +I QIEYYF D NL RDKFL+ +IK D+GWV L M+KF RL ++TT
Sbjct: 4 NGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTT 63
Query: 73 EAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDAT 132
+ VIV+AL KS ++L+E++ED TKIRR+P K LP ++ D+ +S+Y+K P DAT
Sbjct: 64 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDAT 123
Query: 133 LDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDK 192
LDDIK++ + + ++ NI MR K FKGSIFV FD+ E+A+KF+ E +
Sbjct: 124 LDDIKEWLE----DKGQVLNIQMRR-----TLHKAFKGSIFVVFDSIESAKKFV-ETPGQ 173
Query: 193 NLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHE--EKKQEVRSKRDK 249
K + + F +N+++ K N+ E L K +QE + E+ E++S +K
Sbjct: 174 KYKETDLLILFKDDYFAKKNEER--KQNK-VEAKLRAKQEQEAKQKLEEDAEMKSLEEK 229
Score = 145 (56.1 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 57/205 (27%), Positives = 106/205 (51%)
Query: 203 KNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNT 262
++A+KF+ E + K E LLI ++ +Y +K +E + + ++K + + E
Sbjct: 162 ESAKKFV-ETPGQKYK-----ETDLLILFKDDYFAKKNEERKQNKVEAKLRAKQEQEAKQ 215
Query: 263 ---EGSKQVVLELPTGALLKIS-DIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTA 318
E ++ LE G LLK S D+ + RED+ + ++ EI +I+F G
Sbjct: 216 KLEEDAEMKSLEEKIGCLLKFSGDLDDQTCREDLHILF----SNHGEIKWIDFVRGAKEG 271
Query: 319 FVRYKKENNAEAVLKALGSKE--IVIKDVKVSIEVVTGEEEQTVLDRMKIDIFKRRQKLM 376
+ +K E EA+ KA + + +++ +V+ EV+ GE E+ L + I + +Q+ +
Sbjct: 272 IILFK-EKAKEALGKAKDANNGNLQLRNKEVTWEVLEGEVEKEALKK----IIEDQQESL 326
Query: 377 NEKKS-GRKFGKKGPRGTKRSRGGN 400
N+ KS GR+F KG +G K ++ G+
Sbjct: 327 NKWKSKGRRFKGKG-KGNKAAQPGS 350
>UNIPROTKB|E9PFH8 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 EMBL:AC009967 HGNC:HGNC:11316 IPI:IPI00916802
ProteinModelPortal:E9PFH8 SMR:E9PFH8 PRIDE:E9PFH8
Ensembl:ENST00000409005 ArrayExpress:E9PFH8 Bgee:E9PFH8
Uniprot:E9PFH8
Length = 361
Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
Identities = 98/239 (41%), Positives = 147/239 (61%)
Query: 13 SGAEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTT 72
+G +++ LE +I QIEYYF D NL RDKFL+ +IK D+GWV L M+KF RL ++TT
Sbjct: 4 NGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTT 63
Query: 73 EAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDAT 132
+ VIV+AL KS ++L+E++ED TKIRR+P K LP ++ D+ +S+Y+K P DAT
Sbjct: 64 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDAT 123
Query: 133 LDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDK 192
LDDIK++ + + ++ NI MR K FKGSIFV FD+ E+A+KF+ E +
Sbjct: 124 LDDIKEWLE----DKGQVLNIQMRR-----TLHKAFKGSIFVVFDSIESAKKFV-ETPGQ 173
Query: 193 NLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHE--EKKQEVRSKRDK 249
K + + F +N+++ K N+ E L K +QE + E+ E++S +K
Sbjct: 174 KYKETDLLILFKDDYFAKKNEER--KQNK-VEAKLRAKQEQEAKQKLEEDAEMKSLEEK 229
Score = 122 (48.0 bits), Expect = 0.00012, P = 0.00012
Identities = 55/201 (27%), Positives = 100/201 (49%)
Query: 203 KNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNT 262
++A+KF+ E + K E LLI ++ +Y +K +E + + ++K + + E
Sbjct: 162 ESAKKFV-ETPGQKYK-----ETDLLILFKDDYFAKKNEERKQNKVEAKLRAKQEQEAKQ 215
Query: 263 ---EGSKQVVLELPTGALLKIS-DIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTA 318
E ++ LE G LLK S D+ + RED+ + ++ EI +I+F G
Sbjct: 216 KLEEDAEMKSLEEKIGCLLKFSGDLDDQTCREDLHILF----SNHGEIKWIDFVRGAKEG 271
Query: 319 FVRYKKENNAEAVLKALGSKE--IVIKDVKVSIEVVTGEEEQTVLDRMKIDIFKRRQKLM 376
+ +K E EA+ KA + + +++ +V+ EV+ GE E+ L + I + +Q+ +
Sbjct: 272 IILFK-EKAKEALGKAKDANNGNLQLRNKEVTWEVLEGEVEKEALKK----IIEDQQESL 326
Query: 377 NEKKSGRKFGKKGPRGTKRSR 397
N+ KS KGP KR+R
Sbjct: 327 NKWKS------KGP--VKRAR 339
>UNIPROTKB|E2RH09 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 KO:K11090 Pfam:PF05383
SMART:SM00715 InterPro:IPR014886 Pfam:PF08777
GeneTree:ENSGT00530000063464 CTD:6741 OMA:ENAEMKS EMBL:AAEX03017743
RefSeq:XP_535952.2 ProteinModelPortal:E2RH09
Ensembl:ENSCAFT00000038572 GeneID:478787 KEGG:cfa:478787
Uniprot:E2RH09
Length = 406
Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
Identities = 96/239 (40%), Positives = 146/239 (61%)
Query: 13 SGAEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTT 72
+G +++ LE +I QIEYYF D NL RDKFL+ +IK D+GWV L M+KF RL ++TT
Sbjct: 4 NGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTT 63
Query: 73 EAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDAT 132
+ VIV+AL KS ++L+E++ED TKIRR+P K LP ++ D+ +S+Y+K P DAT
Sbjct: 64 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDAT 123
Query: 133 LDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDK 192
LDDIK++ + + ++ NI MR K FKGSIF FD+ E+A KF+ + D+
Sbjct: 124 LDDIKEWLE----DKGQVLNIQMRR-----TLHKAFKGSIFAVFDSIESARKFV-DTPDQ 173
Query: 193 NLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEE--KKQEVRSKRDK 249
K + + F +N+++ K N+ E L K +QE ++ + E++S +K
Sbjct: 174 KYKDTDLLILFKEDYFAKKNEER--KQNK-VEAKLRAKQEQEEKQKLAESAEIKSLEEK 229
Score = 142 (55.0 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 55/205 (26%), Positives = 107/205 (52%)
Query: 203 KNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSK---KSTEGDGE 259
++A KF+ + D+ K + LLI ++++Y +K +E + + ++K K + + +
Sbjct: 162 ESARKFV-DTPDQKYK-----DTDLLILFKEDYFAKKNEERKQNKVEAKLRAKQEQEEKQ 215
Query: 260 GNTEGSKQVVLELPTGALLKIS-DIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTA 318
E ++ LE G LLK S D+ + RED+ + + EI +I+F G
Sbjct: 216 KLAESAEIKSLEEKIGCLLKFSGDLDDQTCREDLHILF----SSHGEIKWIDFVRGAKEG 271
Query: 319 FVRYKKENNAEAVLKALGSKE--IVIKDVKVSIEVVTGEEEQTVLDRMKIDIFKRRQKLM 376
+ +K E EA+ KA + + +++ +V+ EV+ G+ E+ L + I + +Q+ +
Sbjct: 272 IILFK-EKAKEALDKAKDANNGNLQLRNKEVTWEVLEGDVEKEALKK----IIEDQQESL 326
Query: 377 NEKKS-GRKFGKKGPRGTKRSRGGN 400
N+ KS GR+F KG +G K ++ G+
Sbjct: 327 NKWKSKGRRFKGKG-KGNKAAQTGS 350
>WB|WBGene00016653 [details] [associations]
symbol:C44E4.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0018991 "oviposition" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0018991 GO:GO:0040010
GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
EMBL:FO080862 GO:GO:0030529 GO:GO:0040027 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
PIR:T30953 RefSeq:NP_491411.1 ProteinModelPortal:O01806 SMR:O01806
STRING:O01806 PaxDb:O01806 EnsemblMetazoa:C44E4.4 GeneID:172070
KEGG:cel:CELE_C44E4.4 UCSC:C44E4.4 CTD:172070 WormBase:C44E4.4
HOGENOM:HOG000022257 InParanoid:O01806 OMA:KSANSEI NextBio:873891
Uniprot:O01806
Length = 396
Score = 321 (118.1 bits), Expect = 9.3e-38, Sum P(2) = 9.3e-38
Identities = 66/161 (40%), Positives = 104/161 (64%)
Query: 23 ENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDALK 82
+ +II+Q+EYYF +INL RDKFLQ ++K+DDGWV +TTML F RLA ++ + + I +A+K
Sbjct: 13 DQKIIKQLEYYFGNINLPRDKFLQEKLKEDDGWVPITTMLNFNRLASISKDTEKIANAVK 72
Query: 83 KSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDATLDDIKDFFKK 142
S S +I V+ED KIRRN E +P +++ + + +++Y+K D LDDI +
Sbjct: 73 NSGSGIISVSEDNQKIRRNEENPVPENSLEYWQKIKHRTVYMKGFSTDTQLDDIIQW--A 130
Query: 143 NTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAE 183
N + + N++MR + + FKGS+F+T+ +E AE
Sbjct: 131 NQFGETE--NVLMRRLKP---GDRTFKGSVFITYKTREEAE 166
Score = 100 (40.3 bits), Expect = 9.3e-38, Sum P(2) = 9.3e-38
Identities = 51/219 (23%), Positives = 93/219 (42%)
Query: 191 DKNLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKR--D 248
D+ K + +K E+ K + +KF E L Q EY K +E + R +
Sbjct: 148 DRTFKGSVFITYKTREEAEAAQKAE-VKFGET---ELTKMMQDEYWTLKNKETKEARAAN 203
Query: 249 KSKKSTEGDGEGNTEGSKQVVLELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVF 308
K+ KS + E Q + G +L + + P S D + K+ + +
Sbjct: 204 KAAKSAKNTSEAIESEKAQHAVRYEKGLILAVDGLG-PDSTIDSIKTFFKLHGS---VGY 259
Query: 309 IEFNVGEPTAFVRYKKENNAEAVLKA------LGSK-EIVIKDVKVSIEVVTGEEEQTVL 361
+ G TA +R+ N++E KA G+ ++++++ ++S V+ GEEE+
Sbjct: 260 VAHENGGKTAEIRFN--NDSEGAQKAWDNAVAAGTDGKVILQEAELSARVLDGEEEE--- 314
Query: 362 DRMKIDIFKRRQKLMNEKKSGRKF-GKKGPRGTKRSRGG 399
+ + R+ + + GR G +G RG + RGG
Sbjct: 315 -KYWTEFNARKNQRQGGGRGGRGGRGGRGGRGGRGGRGG 352
>UNIPROTKB|F1S1V1 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:ENAEMKS EMBL:CU466304
Ensembl:ENSSSCT00000017354 Uniprot:F1S1V1
Length = 402
Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 98/234 (41%), Positives = 137/234 (58%)
Query: 13 SGAEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTT 72
+G +++ LE +I QIEYYF D NL RDKFL+ +IK D+GWV L M+KF RL ++TT
Sbjct: 4 NGDNEKLAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTT 63
Query: 73 EAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDAT 132
+ VI++AL KS ++L+E++ED TKIRR+P K LP ++ DL +S+YVK P DAT
Sbjct: 64 DFNVIIEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDLKNRSVYVKGFPTDAT 123
Query: 133 LDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLN----E 188
LDDIKD+ + + +I NI MR K FKGSIF FD+ E+A+KF+ +
Sbjct: 124 LDDIKDWLE----DKGEILNIQMRR-----TLHKTFKGSIFAVFDSIESAKKFVKTPGQK 174
Query: 189 NKDKNLK--FNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKK 240
KD +L F E K E E K ++ +H K + H E +
Sbjct: 175 YKDTDLLILFKEEYFAKKNE----ERKKHKIEAKLRAKHRQQEKLKLAEHPEMR 224
Score = 121 (47.7 bits), Expect = 0.00019, P = 0.00019
Identities = 52/201 (25%), Positives = 99/201 (49%)
Query: 203 KNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSK---KSTEGDGE 259
++A+KF+ K K+ + LLI +++EY +K +E + + ++K K + +
Sbjct: 162 ESAKKFV---KTPGQKYKDT---DLLILFKEEYFAKKNEERKKHKIEAKLRAKHRQQEKL 215
Query: 260 GNTEGSKQVVLELPTGALLKI-SDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTA 318
E + LE G LLK ++ + SRED + + EI +I+F G
Sbjct: 216 KLAEHPEMRALEGKIGCLLKFCGNLDDQTSREDFHNLFAR----HGEIKWIDFVRGAKEG 271
Query: 319 FVRYKKENNAEAVLKALGSKE--IVIKDVKVSIEVVTGEEEQTVLDRMKIDIFKRRQKLM 376
+ +K E E + +A + + I++ +V EV+ G+ E+ L + I + +Q+ +
Sbjct: 272 TILFK-ERAKEVLARARDAHHGNLQIRNKRVVWEVLRGDMERRALRK----IIQDQQESL 326
Query: 377 NEKKS-GRKFGKKGPRGTKRS 396
N+ K+ GR+F +G RG R+
Sbjct: 327 NKWKTRGRRFRGRGGRGGGRA 347
>UNIPROTKB|P10881 [details] [associations]
symbol:SSB "Lupus La protein homolog" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
EMBL:X13698 EMBL:BC103234 IPI:IPI00687044 PIR:S03849
RefSeq:NP_788838.1 UniGene:Bt.15513 ProteinModelPortal:P10881
SMR:P10881 STRING:P10881 PRIDE:P10881 Ensembl:ENSBTAT00000011484
GeneID:338071 KEGG:bta:338071 CTD:6741 HOGENOM:HOG000006947
HOVERGEN:HBG001407 OMA:ENAEMKS NextBio:20812521 Uniprot:P10881
Length = 404
Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
Identities = 95/239 (39%), Positives = 145/239 (60%)
Query: 13 SGAEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTT 72
+G +++ LE +I QIEYYF D NL RDKFL+ +IK D+GWV L M+KF RL ++TT
Sbjct: 4 NGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTT 63
Query: 73 EAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDAT 132
+ VIV+AL KS ++L+E++ED TKIRR+P K LP ++ D+ +S+Y+K P DA
Sbjct: 64 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDAA 123
Query: 133 LDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDK 192
LDDIK++ + + ++ NI MR K FKGSIF FD+ E+A+KF+ E +
Sbjct: 124 LDDIKEWLE----DKGQVLNIQMRR-----TLHKAFKGSIFAVFDSIESAKKFV-ETPGQ 173
Query: 193 NLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEE--KKQEVRSKRDK 249
K + + F +N+++ K N+ E L K +QE ++ + E++S +K
Sbjct: 174 KYKDTDLLILFKEDYFTKKNEER--KQNK-MEAKLRAKQEQEEKQKLAENAEMKSLEEK 229
Score = 145 (56.1 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 55/205 (26%), Positives = 107/205 (52%)
Query: 203 KNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSK---KSTEGDGE 259
++A+KF+ E + K + LLI ++++Y +K +E + + ++K K + + +
Sbjct: 162 ESAKKFV-ETPGQKYK-----DTDLLILFKEDYFTKKNEERKQNKMEAKLRAKQEQEEKQ 215
Query: 260 GNTEGSKQVVLELPTGALLKIS-DIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTA 318
E ++ LE G LLK S D+ + RED+ + ++ EI +I F G
Sbjct: 216 KLAENAEMKSLEEKIGCLLKFSGDLDDQTCREDLHTLF----SNHGEIKWIHFVRGAKEG 271
Query: 319 FVRYKKENNAEAVLKA--LGSKEIVIKDVKVSIEVVTGEEEQTVLDRMKIDIFKRRQKLM 376
+ +K E EA+ KA + + +++ +V+ EV+ G+ E+ L + I + +Q+ +
Sbjct: 272 IILFK-EKAKEALDKAKEANNGNLQLRNKEVTWEVLEGDVEKEALKK----IIEDQQESL 326
Query: 377 NEKKS-GRKFGKKGPRGTKRSRGGN 400
N+ KS GR+F KG +G K ++ G+
Sbjct: 327 NKWKSKGRRFKGKG-KGNKAAQAGS 350
>UNIPROTKB|F1NYE7 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:ENAEMKS
EMBL:AADN02020271 IPI:IPI00680677 Ensembl:ENSGALT00000033213
ArrayExpress:F1NYE7 Uniprot:F1NYE7
Length = 404
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 95/210 (45%), Positives = 133/210 (63%)
Query: 13 SGAEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTT 72
+G +S LE++I +QIEYYF + NL RDKFL+ +IK DDGWV L M+KF RL++++
Sbjct: 4 NGDGENMSILESKICQQIEYYFGNHNLPRDKFLKEQIKLDDGWVPLEVMIKFNRLSRLSK 63
Query: 73 EAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDAT 132
+ VIV+AL+KS + L+E+NED TKIRR+P K LP + + + +S+YVK P+DAT
Sbjct: 64 DFGVIVEALRKSKTGLMEINEDKTKIRRSPNKPLPELNDQYKAAIKNRSVYVKGFPLDAT 123
Query: 133 LDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFL---NEN 189
LDDIK++ + + + NI MR QK FKGSIF FD+ E+A+KF N+
Sbjct: 124 LDDIKEWLE----DKGPVENIQMRR-----TLQKTFKGSIFAVFDSVESAKKFTEIPNQK 174
Query: 190 -KDKNL--KFNEN-CEHKNAEKFLNENKDK 215
KD L F E C KN E+ N+ + K
Sbjct: 175 YKDTELIVLFKEEYCTKKNEERKQNKVEAK 204
Score = 145 (56.1 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 56/216 (25%), Positives = 107/216 (49%)
Query: 203 KNAEKFLNENKDKNLKFNENCEHSLLIKWQQEY----HEEKKQEVRSKRDKSKKSTEGDG 258
++A+KF + N K+ + L++ +++EY +EE+KQ + ++K+ E +
Sbjct: 162 ESAKKF---TEIPNQKYKDT---ELIVLFKEEYCTKKNEERKQNKVEAKARAKQEKE-EK 214
Query: 259 EGNTEGSKQVVLELPTGALLKIS-DIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPT 317
+ ++ LE TG LLK S D+ + RED+ V +D EI +I F G
Sbjct: 215 QKQAADAEMKSLEEKTGCLLKFSGDLDDQTCREDLHVVF----SDHGEIKWIHFVRGAKE 270
Query: 318 AFVRYKKENNAEAVLKALGSKE--IVIKDVKVSIEVVTGEEEQTVLDRMKIDIFKRRQKL 375
+ +K + EA+ KA + + +++ V+ E++ G+ E+ L + I + +Q+L
Sbjct: 271 GIILFK-DAAKEALEKAKEAHNGNLQLRNKDVTWELLEGDAEKEALKK----ILEDQQEL 325
Query: 376 MNEKKSGRKFGKKGPRGTKRSRGGNFE-SNKKAKVE 410
+ +K GRK +G + + + G + KK K E
Sbjct: 326 LKQKGKGRKLKGRGGKMAQGAHKGKVQFQGKKIKFE 361
>UNIPROTKB|F1P301 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00530000063464 EMBL:AADN02020271 IPI:IPI01017187
Ensembl:ENSGALT00000038515 ArrayExpress:F1P301 Uniprot:F1P301
Length = 205
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 94/211 (44%), Positives = 133/211 (63%)
Query: 13 SGAEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTT 72
+G +S LE++I +QIEYYF + NL RDKFL+ +IK DDGWV L M+KF RL++++
Sbjct: 4 NGDGENMSILESKICQQIEYYFGNHNLPRDKFLKEQIKLDDGWVPLEVMIKFNRLSRLSK 63
Query: 73 EAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDAT 132
+ VIV+AL+KS + L+E+NED TKIRR+P K LP + + + +S+YVK P+DAT
Sbjct: 64 DFGVIVEALRKSKTGLMEINEDKTKIRRSPNKPLPELNDQYKAAIKNRSVYVKGFPLDAT 123
Query: 133 LDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFL---NEN 189
LDDIK++ + + + NI MR QK FKGSIF FD+ E+A+KF N+
Sbjct: 124 LDDIKEWLE----DKGPVENIQMRR-----TLQKTFKGSIFAVFDSVESAKKFTEIPNQK 174
Query: 190 -KDKNL--KFNEN-CEHKNAEKFLNENKDKN 216
KD L F E C KN E+ + + K+
Sbjct: 175 YKDTELIVLFKEEYCTKKNEERKQSRGQSKS 205
>UNIPROTKB|E7ERC4 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 EMBL:AC009967 HGNC:HGNC:11316 IPI:IPI00916922
ProteinModelPortal:E7ERC4 SMR:E7ERC4 PRIDE:E7ERC4
Ensembl:ENST00000422006 ArrayExpress:E7ERC4 Bgee:E7ERC4
Uniprot:E7ERC4
Length = 184
Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
Identities = 83/174 (47%), Positives = 118/174 (67%)
Query: 13 SGAEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTT 72
+G +++ LE +I QIEYYF D NL RDKFL+ +IK D+GWV L M+KF RL ++TT
Sbjct: 4 NGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTT 63
Query: 73 EAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDAT 132
+ VIV+AL KS ++L+E++ED TKIRR+P K LP ++ D+ +S+Y+K P DAT
Sbjct: 64 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDAT 123
Query: 133 LDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFL 186
LDDIK++ + + ++ NI MR K FKGSIFV FD+ E+A+KF+
Sbjct: 124 LDDIKEWLE----DKGQVLNIQMRR-----TLHKAFKGSIFVVFDSIESAKKFV 168
>ZFIN|ZDB-GENE-030131-223 [details] [associations]
symbol:ssb "Sjogren syndrome antigen B (autoantigen
La)" species:7955 "Danio rerio" [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-223 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
HSSP:P05455 InterPro:IPR014886 Pfam:PF08777
GeneTree:ENSGT00530000063464 CTD:6741 HOGENOM:HOG000006947
HOVERGEN:HBG001407 OMA:ENAEMKS OrthoDB:EOG4C2HB3 EMBL:CABZ01067486
EMBL:BC045392 IPI:IPI00506214 RefSeq:NP_955841.1 UniGene:Dr.3463
SMR:Q7ZTI0 STRING:Q7ZTI0 Ensembl:ENSDART00000041627 GeneID:321504
KEGG:dre:321504 InParanoid:Q7ZTI0 NextBio:20807405 Uniprot:Q7ZTI0
Length = 401
Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
Identities = 96/236 (40%), Positives = 140/236 (59%)
Query: 18 EVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVI 77
E+S LE ++ EQIEYYF D NL RDKFL+ +++ DDGWV L TMLKF RL +T+E VI
Sbjct: 6 EMSPLEKKVAEQIEYYFGDHNLPRDKFLKEQLQLDDGWVPLETMLKFNRLKSLTSEESVI 65
Query: 78 VDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDATLDDIK 137
V++L KS + L+E++ED TKIRR+P K LP + ++ L +S+Y+K P++ TLDD+K
Sbjct: 66 VESLLKSKTGLLEISEDKTKIRRDPNKPLPENNEEYRDALKHKSIYMKGFPLETTLDDVK 125
Query: 138 DFFK-KNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKF 196
++ K T E NI +R QK FKGSIF + +E A+ F+ + KN K
Sbjct: 126 EWLADKGTFE-----NIYLRK-----GPQKTFKGSIFAVLETEEAAKAFVERDDIKNFKG 175
Query: 197 NENCEH-KNA--EKFLNENKDKNL--KFNENCEHSLLIKWQQEYHEEKKQEVRSKR 247
NE K+A K + E K + K C+ + Q++ EE+ + + +R
Sbjct: 176 NEMIVMMKDAYFTKKIAERKQNRVESKAKAKCDKE---EKQKQAEEEEMKSLNEQR 228
Score = 158 (60.7 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 76/271 (28%), Positives = 120/271 (44%)
Query: 158 YQDKLANQKKF-KG-SIFVTFDN-KE-NAEK------FLNENKDKNLKFN--ENCEHKNA 205
Y+D L ++ + KG + T D+ KE A+K +L + K K + E + A
Sbjct: 101 YRDALKHKSIYMKGFPLETTLDDVKEWLADKGTFENIYLRKGPQKTFKGSIFAVLETEEA 160
Query: 206 EKFLNENKD-KNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGN--- 261
K E D KN K NE +++ + Y +K E + R +SK + D E
Sbjct: 161 AKAFVERDDIKNFKGNE-----MIVMMKDAYFTKKIAERKQNRVESKAKAKCDKEEKQKQ 215
Query: 262 TEGSKQVVLELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVG--EPTAF 319
E + L G LLK S SRED V +D +I +I+F G E T
Sbjct: 216 AEEEEMKSLNEQRGCLLKFSGELGQTSREDFHSVF----SDHAQIKWIDFTRGAKEGTIL 271
Query: 320 VRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVTGEEEQTVLDRMKIDIFKRRQKLMNEK 379
+ + V +AL ++ +K+ V E++ G+ E L + I + +Q+ +N++
Sbjct: 272 FHSNAKEALQKVREALNGEDPKVKEQAVQWEILEGDVEMETLKK----IIEDQQESINKR 327
Query: 380 KSGRK-FGKKGP-RGTKRSRGGNFESNKKAK 408
K GR F +G RG +R RGG + K K
Sbjct: 328 KGGRGGFRGRGRGRGGRRDRGGREHTQFKGK 358
>FB|FBgn0011638 [details] [associations]
symbol:La "La autoantigen-like" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0008098
"5S rRNA primary transcript binding" evidence=NAS;IDA] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
EMBL:AE014134 GO:GO:0000166 GO:GO:0003677 GO:GO:0003729
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961
eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
EMBL:U07652 EMBL:L32988 PIR:A53773 PIR:A53781 RefSeq:NP_477014.1
RefSeq:NP_724257.1 UniGene:Dm.4836 ProteinModelPortal:P40796
SMR:P40796 DIP:DIP-19001N IntAct:P40796 MINT:MINT-785398
STRING:P40796 PaxDb:P40796 EnsemblMetazoa:FBtr0081373
EnsemblMetazoa:FBtr0081374 GeneID:35305 KEGG:dme:Dmel_CG10922
CTD:35305 FlyBase:FBgn0011638 InParanoid:P40796 OMA:EHNEERR
OrthoDB:EOG4GF1X7 PhylomeDB:P40796 GenomeRNAi:35305 NextBio:792866
Bgee:P40796 GermOnline:CG10922 GO:GO:0008098 Uniprot:P40796
Length = 390
Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 97/308 (31%), Positives = 168/308 (54%)
Query: 20 SKLENQIIEQIEYYFSDINLARDKFLQGEI-KKDDGWVELTTMLKFARLAKMTTEAKVIV 78
+K E II Q+EYYF D NL RDKFL+ +I K +DGWV L+ ++ F RLA ++T+ IV
Sbjct: 48 TKQERAIIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSVLVTFKRLASLSTDLSEIV 107
Query: 79 DALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDATLDDIKD 138
AL KS L+E++ED +RR+PE+ +P + + K++ ++ Y K P+D+ + ++ D
Sbjct: 108 AALNKSEEGLVEISEDKLSLRRHPERPIPEHNEERRKEIQERTAYAKGFPLDSQISELLD 167
Query: 139 FFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENK----DKNL 194
F + D K+ N+ MR + DK KFKGSIF+TF+ K+ A+ FL + K ++ L
Sbjct: 168 FA---ANYD-KVVNLTMRKHYDKPTKSYKFKGSIFLTFETKDQAKAFLEQEKIVYKEREL 223
Query: 195 --KFNENCEHKNAEKFLNEN-KDKNLKFNE-----NCEHSLLIKWQQEYHEEKKQEVRSK 246
K+ + + E++ +N K KN K + + ++ ++ ++E+R
Sbjct: 224 LRKWQVDYLKEKQEEYAQKNEKRKNKKEAKPEPAFELPKNAIVVFEGAPETSSREEIREA 283
Query: 247 RDKSKKSTEGDGE---GNTEGSKQVV-LELPTGALLKISDIKEPVSREDIREVLEKVQTD 302
+K K E G T+GS ++ + + K+ + K ++++ L K T+
Sbjct: 284 FEKIKDFEVAYIEFAKGETKGSVRLTEADAAEKYIAKVEEGKLKF-KDEVSLSLRKA-TE 341
Query: 303 DQEIVFIE 310
++E FI+
Sbjct: 342 EEEKEFID 349
Score = 229 (85.7 bits), Expect = 9.4e-17, P = 9.4e-17
Identities = 78/262 (29%), Positives = 119/262 (45%)
Query: 156 RNYQDKLANQKKFK--GSIFVTFDNKENAEKFLNENKDKNL-KFNENCEHKNAEKFLNEN 212
+ Q++ A K F I D N +K +N K+ K ++ + K + E
Sbjct: 144 KEIQERTAYAKGFPLDSQISELLDFAANYDKVVNLTMRKHYDKPTKSYKFKGSIFLTFET 203
Query: 213 KDKNLKFNEN-----CEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQ 267
KD+ F E E LL KWQ +Y +EK++E K +K K E E
Sbjct: 204 KDQAKAFLEQEKIVYKERELLRKWQVDYLKEKQEEYAQKNEKRKNKKEAKPEP------- 256
Query: 268 VVLELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENN 327
ELP A++ E SRE+IRE EK++ D E+ +IEF GE VR + +
Sbjct: 257 -AFELPKNAIVVFEGAPETSSREEIREAFEKIK--DFEVAYIEFAKGETKGSVRLTEADA 313
Query: 328 AEAVLKALGSKEIVIKD-VKVSIEVVTGEEEQTVLDRMKIDIFKRRQKLMNEKKSGRKFG 386
AE + + ++ KD V +S+ T EEE+ +D+ I+ K+R+ K G++F
Sbjct: 314 AEKYIAKVEEGKLKFKDEVSLSLRKATEEEEKEFIDKA-IEFMKKRRDFTRNK--GKRFN 370
Query: 387 KKGPRGTKRSRGGNFESNKKAK 408
+K G GG KKA+
Sbjct: 371 RKRHGGNDHKHGGG----KKAR 388
>UNIPROTKB|F1MAB1 [details] [associations]
symbol:Ssb "Lupus La protein homolog" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302 RGD:620804
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 IPI:IPI00196913 PRIDE:F1MAB1
Ensembl:ENSRNOT00000010625 ArrayExpress:F1MAB1 Uniprot:F1MAB1
Length = 381
Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
Identities = 83/195 (42%), Positives = 117/195 (60%)
Query: 13 SGAEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTT 72
+G +++ LE +I QIEYYF D NL RDKFL+ +IK D+GWV L TM+KF RL ++TT
Sbjct: 4 NGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLTT 63
Query: 73 EAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDAT 132
+ VIV AL KS + L+EV+ D TKIRR+P + LP ++ D+ +S+Y+K P DAT
Sbjct: 64 DFNVIVQALSKSKANLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTDAT 123
Query: 133 LDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDK 192
LDDIK++ + +I NI MR K FK F K+N E+ ++ + K
Sbjct: 124 LDDIKEWL----DDKGQILNIQMRR-----TLHKTFKADYFA----KKNEERKQSKVEAK 170
Query: 193 NLKFNENCEHKNAEK 207
LK + EH+ K
Sbjct: 171 -LKAKQ--EHEGRHK 182
Score = 123 (48.4 bits), Expect = 0.00011, P = 0.00011
Identities = 58/238 (24%), Positives = 118/238 (49%)
Query: 180 ENAEKFLNENKDKN--LK-FNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYH 236
E +++ N+ K+++ +K F + + +++L+ DK N +L ++ +Y
Sbjct: 99 EVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLD---DKGQILNIQMRRTLHKTFKADYF 155
Query: 237 EEKKQEVRSKRDKSKKSTEGDGEGNTE-GSKQV-VLELPTGALLKIS-DIKEPVSREDIR 293
+K +E + + ++K + + EG + GS + LE G LLK S D+ + RED+
Sbjct: 156 AKKNEERKQSKVEAKLKAKQEHEGRHKPGSTETRALEGKMGCLLKFSGDLDDQTCREDLH 215
Query: 294 EVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKE--IVIKDVKVSIEV 351
+ ++ EI +I+F G + +K E +A+ KA + +++++ KV+ +V
Sbjct: 216 FLF----SNHGEIKWIDFVRGAKEGIILFK-EKAKDALEKARSANNGNLLLRNKKVTWKV 270
Query: 352 VTGEEEQTVLDRMKIDIFKRRQKLMNEKKSGRKFGKKGPRGTKRSRGGN-FESNKKAK 408
+ G E+ D MK I +Q+ +N+ KS KG +R +G + F + ++ K
Sbjct: 271 LEGHAEK---DAMK-KITDDQQESLNKWKS------KGGHAARRFKGSHVFTAARRFK 318
>UNIPROTKB|Q5ZKS1 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR002344 PRINTS:PR00302 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 GeneTree:ENSGT00530000063464 HOGENOM:HOG000006947
OrthoDB:EOG4C2HB3 EMBL:AADN02020271 EMBL:AJ720013 IPI:IPI00599030
UniGene:Gga.42753 UniGene:Gga.53297 SMR:Q5ZKS1 STRING:Q5ZKS1
Ensembl:ENSGALT00000015751 HOVERGEN:HBG059895 InParanoid:Q5ZKS1
Uniprot:Q5ZKS1
Length = 137
Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 65/129 (50%), Positives = 94/129 (72%)
Query: 13 SGAEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTT 72
+G +S LE++I +QIEYYF + NL RDKFL+ +IK DDGWV L M+KF RL++++
Sbjct: 4 NGDGENMSILESKICQQIEYYFGNHNLPRDKFLKEQIKLDDGWVPLEVMIKFNRLSRLSK 63
Query: 73 EAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDAT 132
+ VIV+AL+KS + L+E+NED TKIRR+P K LP + + + +S+YVK P+DAT
Sbjct: 64 DFGVIVEALRKSKTGLMEINEDKTKIRRSPNKPLPELNDQYKAAIKNRSVYVKGFPLDAT 123
Query: 133 LDDIKDFFK 141
LDDIK++ +
Sbjct: 124 LDDIKEWLE 132
>UNIPROTKB|E9PFL9 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR002344 PRINTS:PR00302 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
EMBL:AC009967 HGNC:HGNC:11316 IPI:IPI00917205
ProteinModelPortal:E9PFL9 SMR:E9PFL9 PRIDE:E9PFL9
Ensembl:ENST00000413002 ArrayExpress:E9PFL9 Bgee:E9PFL9
Uniprot:E9PFL9
Length = 134
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 57/117 (48%), Positives = 83/117 (70%)
Query: 13 SGAEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTT 72
+G +++ LE +I QIEYYF D NL RDKFL+ +IK D+GWV L M+KF RL ++TT
Sbjct: 4 NGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTT 63
Query: 73 EAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPV 129
+ VIV+AL KS ++L+E++ED TKIRR+P K LP ++ D+ +S+Y+ + PV
Sbjct: 64 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYISH-PV 119
>UNIPROTKB|E9PGX9 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 EMBL:AC009967 HGNC:HGNC:11316
IPI:IPI00917386 ProteinModelPortal:E9PGX9 SMR:E9PGX9 PRIDE:E9PGX9
Ensembl:ENST00000417292 ArrayExpress:E9PGX9 Bgee:E9PGX9
Uniprot:E9PGX9
Length = 120
Score = 262 (97.3 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 58/126 (46%), Positives = 85/126 (67%)
Query: 61 MLKFARLAKMTTEAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQ 120
M+KF RL ++TT+ VIV+AL KS ++L+E++ED TKIRR+P K LP ++ D+ +
Sbjct: 1 MIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNR 60
Query: 121 SLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKE 180
S+Y+K P DATLDDIK++ + + ++ NI MR K FKGSIFV FD+ E
Sbjct: 61 SVYIKGFPTDATLDDIKEWLE----DKGQVLNIQMRR-----TLHKAFKGSIFVVFDSIE 111
Query: 181 NAEKFL 186
+A+KF+
Sbjct: 112 SAKKFV 117
>UNIPROTKB|E1BQG3 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA
EMBL:AADN02009328 IPI:IPI00680045 Ensembl:ENSGALT00000019679
ArrayExpress:E1BQG3 Uniprot:E1BQG3
Length = 602
Score = 205 (77.2 bits), Expect = 6.9e-22, Sum P(3) = 6.9e-22
Identities = 56/176 (31%), Positives = 103/176 (58%)
Query: 17 AEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKD-DGWVELTTMLKFARLAKMTTEAK 75
+ V ++ I +Q++++F D+NL +D+FL+ +I+K DG+V+++ ++ F ++ K+TT+ K
Sbjct: 31 SRVKQVLADIAKQVDFWFGDVNLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGK 90
Query: 76 VIVDALKKSTSKLIEVNEDGTKIRRN-PEKELPTFDIDFVKDLIAQSLYVKYIPVDATLD 134
+I A+K S+ ++E++ +GT+IRR P E P KD+ ++++YV+ +P +
Sbjct: 91 LIARAVKSSS--VVELDLEGTRIRRRRPLGERP-------KDVDSRTVYVELLPKNVNHS 141
Query: 135 DIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEK---FLN 187
I+ F K + + + + Y K K G FV F+ KE AEK FLN
Sbjct: 142 WIERVFGKCGN----VVYVSIPRY--KSTGDPK--GFAFVEFETKEQAEKAIEFLN 189
Score = 101 (40.6 bits), Expect = 6.9e-22, Sum P(3) = 6.9e-22
Identities = 37/140 (26%), Positives = 70/140 (50%)
Query: 249 KSKKSTEGDG----EGNTEGSKQVVLELPTGALLKISDIKEPVSREDIREVLEKVQTDDQ 304
K+ +ST DG + NT G + V +G ++KI + R+ I++ L +
Sbjct: 449 KNGESTSEDGAPPVKANTMGPQFV-----SGVIVKIISTEPLPGRKQIKDALAMLA---- 499
Query: 305 EIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVTGEEEQTVLDRM 364
++ +++ G+ VR+ +A+ V+K+ K++ IK+ E++TG+ EQ ++
Sbjct: 500 DVAYVDMLEGDTECHVRFNTPEDAQTVMKS--HKDLQIKN-NWKYEILTGDNEQRYWQKI 556
Query: 365 KIDIFKRRQKLMN--EKKSG 382
+D R+ KL EKK G
Sbjct: 557 LVD---RQAKLNQPREKKRG 573
Score = 60 (26.2 bits), Expect = 6.9e-22, Sum P(3) = 6.9e-22
Identities = 32/104 (30%), Positives = 43/104 (41%)
Query: 169 KGSIFVTFDNKENAEK---FLNENKDKNLKFNENCEHKNAEKFLNENKDKNLKFNENCEH 225
KG FV F+ KE AEK FLN E K F K+K + N +
Sbjct: 168 KGFAFVEFETKEQAEKAIEFLNNPP-------EEAPRKPG-MFPKTVKNKPVP-TLNTSN 218
Query: 226 SLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVV 269
S ++ EEKK++ K+ KSK EG + E + V
Sbjct: 219 SSVVALNPCKIEEKKKK---KKKKSKIKKEGSVQAAVEAKESNV 259
Score = 59 (25.8 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 230 KWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVV 269
KW + E + V S+ K K+S+ GDGE + K+ V
Sbjct: 297 KWDRS--ESSEVPVESRPGKRKRSSSGDGETSVAKVKKTV 334
Score = 42 (19.8 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 174 VTFDNKENAEKFLNENKDKNLKFNENCE---HKNAEKFLNENK-DKNLKFNE 221
V F+ E+A+ + +KD +K N E N +++ + D+ K N+
Sbjct: 515 VRFNTPEDAQTVMKSHKDLQIKNNWKYEILTGDNEQRYWQKILVDRQAKLNQ 566
Score = 40 (19.1 bits), Expect = 7.8e-20, Sum P(3) = 7.8e-20
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 232 QQEYHEEKKQEVRSKRDKSKKSTEGDGEGN 261
+ E H K++ + +D ++ E D +G+
Sbjct: 336 KDEVHPVKEETTEAPKDSNEVPLEDDKDGD 365
>POMBASE|SPAC57A10.10c [details] [associations]
symbol:sla1 "La protein homolog" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006386 "termination of RNA
polymerase III transcription" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0034307 "regulation
of ascospore formation" evidence=IMP] [GO:0034414 "tRNA 3'-trailer
cleavage, endonucleolytic" evidence=IMP] [GO:0042779 "tRNA
3'-trailer cleavage" evidence=IGI] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC57A10.10c GO:GO:0005634
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0030529 GO:GO:0031137 InterPro:IPR006630
PROSITE:PS50961 EMBL:AF022949 EMBL:AB011371 PIR:T38937 PIR:T43542
RefSeq:NP_593315.1 ProteinModelPortal:P87058 STRING:P87058
PRIDE:P87058 EnsemblFungi:SPAC57A10.10c.1 GeneID:2541530
KEGG:spo:SPAC57A10.10c eggNOG:COG5193 HOGENOM:HOG000113277
KO:K11090 OMA:FFEENAG OrthoDB:EOG43JGF6 NextBio:20802627
GO:GO:0034307 GO:GO:0006386 GO:GO:0034414 Pfam:PF05383
SMART:SM00715 Uniprot:P87058
Length = 298
Score = 254 (94.5 bits), Expect = 1.7e-21, P = 1.7e-21
Identities = 67/179 (37%), Positives = 103/179 (57%)
Query: 23 ENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDALK 82
E ++++Q+E+YFSD NL DKFL +K+DGWV + T+ F R+ + + IV+AL+
Sbjct: 64 EAEVLKQVEFYFSDTNLPHDKFLWTTSQKNDGWVPIQTIANFKRMRRFQP-LEAIVNALR 122
Query: 83 KSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYI--PVDATLDDIKDFF 140
KS +L+EV+E G K+RR +P +D K ++ +S+Y K D T ++ FF
Sbjct: 123 KSP-ELLEVDEAGEKVRRM----IPLVRVDN-KSVMERSVYCKGFGDEKDDTQIALEKFF 176
Query: 141 KKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFNEN 199
++N I+ + MR DK KFKGS+FV F + A KFL + K LK+ E+
Sbjct: 177 EENAGP---ISAVRMRRDDDK-----KFKGSVFVEFKEPDVANKFLEKVKTAPLKWGED 227
>DICTYBASE|DDB_G0281763 [details] [associations]
symbol:DDB_G0281763 "Lupus La protein" species:44689
"Dictyostelium discoideum" [GO:0045335 "phagocytic vesicle"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 PRINTS:PR00302 SMART:SM00360
dictyBase:DDB_G0281763 GO:GO:0005634 GO:GO:0045335 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 EMBL:AAFI02000042 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 KO:K11090
Pfam:PF05383 SMART:SM00715 InterPro:IPR014886 Pfam:PF08777
RefSeq:XP_640625.1 ProteinModelPortal:Q54TG6 STRING:Q54TG6
EnsemblProtists:DDB0233755 GeneID:8623235 KEGG:ddi:DDB_G0281763
InParanoid:Q54TG6 OMA:NDDANAC ProtClustDB:CLSZ2430537
Uniprot:Q54TG6
Length = 354
Score = 255 (94.8 bits), Expect = 1.1e-20, P = 1.1e-20
Identities = 72/211 (34%), Positives = 114/211 (54%)
Query: 25 QIIEQIEYYFSDINLARDKFLQGEIKKD-DGWVELTTMLKFARLAKMTTEAKVIVDALKK 83
QI++Q+EYYFSD N RDKFL+ E K+ D ++ + + F R+ ++T+ ++I +ALKK
Sbjct: 8 QILKQVEYYFSDSNFPRDKFLRSEAAKNVDNYISIDVIASFNRMKTISTDLQLITEALKK 67
Query: 84 STSKLIEVNEDGTKIRR-NPEKELPTFDIDFVKDLIAQSLYVKYIPVDATLDDIKDFFKK 142
ST ++V+EDG +RR +P LP +ID K +LY K P D T++ +++FF
Sbjct: 68 STR--LQVSEDGKMVRRLDP---LPE-NIDCGK-----TLYSKGWPEDTTIEKVQEFF-- 114
Query: 143 NTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENK---DKNL---KF 196
N + K+ ++ +R DK FKGS F+ +E K + E +K L F
Sbjct: 115 NANGGYKVVSVRLRKKSDK-----SFKGSFLADFETEEIVNKIITEAPKLGEKELIYQTF 169
Query: 197 NENCEHKNAEK---FLNENKDKNLKFNENCE 224
+ + K EK F + N DK K + +
Sbjct: 170 KQFSDEKKDEKEKFFASTNGDKKRKAKKEAD 200
Score = 142 (55.0 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 71/292 (24%), Positives = 130/292 (44%)
Query: 128 PVDATLDDIKDFFKKNTSEDV---KITNIIMRNYQDKLAN---QKKFKGSIFVTFDNKEN 181
P+ +D K + K ED K+ N K+ + +KK S +F
Sbjct: 85 PLPENIDCGKTLYSKGWPEDTTIEKVQEFFNANGGYKVVSVRLRKKSDKSFKGSFLADFE 144
Query: 182 AEKFLNENKDKNLKFNEN-CEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKK 240
E+ +N+ + K E ++ ++F +E KD+ KF + + +KK
Sbjct: 145 TEEIVNKIITEAPKLGEKELIYQTFKQFSDEKKDEKEKFFAST------------NGDKK 192
Query: 241 QEVRSKRDKSKKSTEGDGEGNTEGSKQVVLE----LPTGALLKISDIKEPVSREDIREVL 296
++ + + D+ + + D +G+ + K+ V E +P G +L + + + R DI+E+
Sbjct: 193 RKAKKEADR-ENGDDDDNDGDNKDVKKEVEEEEVMIP-GVILCFKGVGKGLHRGDIKEIF 250
Query: 297 EKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVTGEE 356
+ E+ F+ +N E VRYK + + +++L + I + ++ GEE
Sbjct: 251 SQYG----EVQFVGYNSDEENGSVRYKTAESCKRAIESLTETKKEIGGQIPTYNLLEGEE 306
Query: 357 EQTVLDRMKIDIFKRRQKLMNEKKSGRKFG--KKGPRGTKRSRGGNFESNKK 406
E+ +++ I+ K K KK G K G KKG G K+ GGNF+ KK
Sbjct: 307 EKKEWEKI-IERKKNAAKNGGFKKGGFKKGGFKKG--GFKK--GGNFKKVKK 353
>MGI|MGI:107634 [details] [associations]
symbol:Larp7 "La ribonucleoprotein domain family, member 7"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IGI]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0035562 "negative regulation of chromatin binding"
evidence=IGI] [GO:0036093 "germ cell proliferation" evidence=IMP]
[GO:1900087 "positive regulation of G1/S transition of mitotic cell
cycle" evidence=IMP] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107634 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715 CTD:51574
HOVERGEN:HBG081891 KO:K15191 OrthoDB:EOG4TXBS0 InterPro:IPR014886
Pfam:PF08777 ChiTaRS:LARP7 EMBL:AC113952 EMBL:BC020127
EMBL:BC023165 EMBL:BC029178 EMBL:AK012726 EMBL:AK012772
EMBL:AK015041 EMBL:AK162147 IPI:IPI00340860 IPI:IPI00831552
RefSeq:NP_613059.2 UniGene:Mm.291032 ProteinModelPortal:Q05CL8
SMR:Q05CL8 IntAct:Q05CL8 STRING:Q05CL8 PhosphoSite:Q05CL8
PaxDb:Q05CL8 PRIDE:Q05CL8 DNASU:28036 Ensembl:ENSMUST00000029588
GeneID:28036 KEGG:mmu:28036 UCSC:uc008rhd.1
GeneTree:ENSGT00530000063464 InParanoid:Q05CL8 OMA:NNPPEDA
NextBio:306558 Bgee:Q05CL8 CleanEx:MM_LARP7 Genevestigator:Q05CL8
Uniprot:Q05CL8
Length = 570
Score = 207 (77.9 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 71/261 (27%), Positives = 130/261 (49%)
Query: 17 AEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKD-DGWVELTTMLKFARLAKMTTEAK 75
+ V ++ I +Q++++F D NL +DKFL+ +I+K DG+V+++ ++ F ++ K+TT+ K
Sbjct: 23 SRVKQVLADIAKQVDFWFGDANLHKDKFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGK 82
Query: 76 VIVDALKKSTSKLIEVNEDGTKIRRN-PEKELPTFDIDFVKDLIAQSLYVKYIPVDATLD 134
+I ALK S+ ++E++ +GT+IRR P E P KD +++YV+ +P + T
Sbjct: 83 LIARALKSSS--VVELDLEGTRIRRKKPLGERP-------KDEEERTVYVELLPKNVTHS 133
Query: 135 DIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEK---FLNENKD 191
I+ F K + + I + +Y K K G FV F+ KE A K FLN +
Sbjct: 134 WIERVFGKCGN----VVYISIPHY--KSTGDPK--GFAFVEFETKEQAAKAIEFLNNPPE 185
Query: 192 KNLK----FNENCEHKNAEKF-LNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSK 246
+ + F + ++K + E K K K + ++ ++ + V
Sbjct: 186 EAPRKPGIFPKTVKNKPIPSLRVAEEKKKKKKKKGRIKKEESVQAKESAVDSSSSGVCKA 245
Query: 247 RDKSKKSTEGDGEGNTEGSKQ 267
+ + ++EG E KQ
Sbjct: 246 TKRPRTASEGSEAETPEAPKQ 266
Score = 107 (42.7 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 43/149 (28%), Positives = 74/149 (49%)
Query: 240 KQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELP---TGALLKISDIKEPV-SREDIREV 295
K E + D K T G G+ ++V + P TG ++KI EP+ R+ ++++
Sbjct: 406 KLESEMETD-CKAPTAGSGQ-ECSTQEKVSAQGPQFVTGVIVKIVS-GEPLPGRKQVKDI 462
Query: 296 LEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVTGE 355
L + E+V+I+ G+ R+K +A+AV+ A EI K ++EV++G+
Sbjct: 463 LATIS----EVVYIDLLEGDTECHARFKTPEDAQAVMNA--QTEIRKKH-SWNLEVLSGD 515
Query: 356 EEQTVLDRMKIDIFKRRQKLMN--EKKSG 382
EQ ++ +D R+ KL EKK G
Sbjct: 516 HEQRYWQKILVD---RQAKLNQPREKKRG 541
>RGD|1592474 [details] [associations]
symbol:Larp7 "La ribonucleoprotein domain family, member 7"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0035562
"negative regulation of chromatin binding" evidence=ISO]
[GO:0036093 "germ cell proliferation" evidence=ISO] [GO:1900087
"positive regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 RGD:1592474 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715
HSSP:Q7YZ92 CTD:51574 HOVERGEN:HBG081891 KO:K15191
OrthoDB:EOG4TXBS0 InterPro:IPR014886 Pfam:PF08777 EMBL:BC083898
IPI:IPI00389960 RefSeq:NP_001037755.2 UniGene:Rn.79854
ProteinModelPortal:Q5XI01 STRING:Q5XI01 PhosphoSite:Q5XI01
PRIDE:Q5XI01 GeneID:686883 KEGG:rno:686883 NextBio:732906
ArrayExpress:Q5XI01 Genevestigator:Q5XI01 Uniprot:Q5XI01
Length = 571
Score = 204 (76.9 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 70/261 (26%), Positives = 130/261 (49%)
Query: 17 AEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKD-DGWVELTTMLKFARLAKMTTEAK 75
+ V ++ I +Q++++F D NL +D+FL+ +I+K DG+V+++ ++ F ++ K+TT+ K
Sbjct: 24 SRVKQVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGK 83
Query: 76 VIVDALKKSTSKLIEVNEDGTKIRRN-PEKELPTFDIDFVKDLIAQSLYVKYIPVDATLD 134
+I ALK S+ ++E++ +GT+IRR P E P KD +++YV+ +P + T
Sbjct: 84 LIARALKSSS--VVELDLEGTRIRRKKPLGERP-------KDEEERTVYVELLPKNVTHS 134
Query: 135 DIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEK---FLNENKD 191
I+ F K + + I + +Y K K G FV F+ KE A K FLN +
Sbjct: 135 WIERVFGKCGN----VVYISIPHY--KSTGDPK--GFAFVEFETKEQAAKAIEFLNNPPE 186
Query: 192 KNLK----FNENCEHKNAEKF-LNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSK 246
+ + F + ++K + E K K K + ++ ++ + V
Sbjct: 187 EAPRKPGIFPKTVKNKPIPSLRVAEEKKKKKKKKGRIKKEESVQAKELVVDSSSSGVSKA 246
Query: 247 RDKSKKSTEGDGEGNTEGSKQ 267
+ + ++EG E KQ
Sbjct: 247 TKRPRTASEGSEAETPEAPKQ 267
Score = 110 (43.8 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 38/147 (25%), Positives = 76/147 (51%)
Query: 242 EVRSKRDKSKKSTEGDGEGNTEGSKQVVLELP---TGALLKISDIKEPV-SREDIREVLE 297
++ S+ + K+ G G+ ++V + P TG ++KI ++P+ R+ ++++L
Sbjct: 408 KLESEMETESKAPPGSGQ-QCSTQEKVSAQGPQFVTGVIVKILS-EDPLPGRKQVKDILA 465
Query: 298 KVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVTGEEE 357
+ E+V+I+ G+ R+K +A+AV+ A EI K ++E+++G+ E
Sbjct: 466 TIS----EVVYIDLLEGDTECHARFKTPEDAQAVMNA--QTEIKKKH-SWNLEILSGDHE 518
Query: 358 QTVLDRMKIDIFKRRQKLMN--EKKSG 382
Q ++ +D R+ KL EKK G
Sbjct: 519 QRYWQKILVD---RQAKLNQPREKKRG 542
>UNIPROTKB|Q5XI01 [details] [associations]
symbol:Larp7 "La-related protein 7" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
RGD:1592474 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715
HSSP:Q7YZ92 CTD:51574 HOVERGEN:HBG081891 KO:K15191
OrthoDB:EOG4TXBS0 InterPro:IPR014886 Pfam:PF08777 EMBL:BC083898
IPI:IPI00389960 RefSeq:NP_001037755.2 UniGene:Rn.79854
ProteinModelPortal:Q5XI01 STRING:Q5XI01 PhosphoSite:Q5XI01
PRIDE:Q5XI01 GeneID:686883 KEGG:rno:686883 NextBio:732906
ArrayExpress:Q5XI01 Genevestigator:Q5XI01 Uniprot:Q5XI01
Length = 571
Score = 204 (76.9 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 70/261 (26%), Positives = 130/261 (49%)
Query: 17 AEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKD-DGWVELTTMLKFARLAKMTTEAK 75
+ V ++ I +Q++++F D NL +D+FL+ +I+K DG+V+++ ++ F ++ K+TT+ K
Sbjct: 24 SRVKQVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGK 83
Query: 76 VIVDALKKSTSKLIEVNEDGTKIRRN-PEKELPTFDIDFVKDLIAQSLYVKYIPVDATLD 134
+I ALK S+ ++E++ +GT+IRR P E P KD +++YV+ +P + T
Sbjct: 84 LIARALKSSS--VVELDLEGTRIRRKKPLGERP-------KDEEERTVYVELLPKNVTHS 134
Query: 135 DIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEK---FLNENKD 191
I+ F K + + I + +Y K K G FV F+ KE A K FLN +
Sbjct: 135 WIERVFGKCGN----VVYISIPHY--KSTGDPK--GFAFVEFETKEQAAKAIEFLNNPPE 186
Query: 192 KNLK----FNENCEHKNAEKF-LNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSK 246
+ + F + ++K + E K K K + ++ ++ + V
Sbjct: 187 EAPRKPGIFPKTVKNKPIPSLRVAEEKKKKKKKKGRIKKEESVQAKELVVDSSSSGVSKA 246
Query: 247 RDKSKKSTEGDGEGNTEGSKQ 267
+ + ++EG E KQ
Sbjct: 247 TKRPRTASEGSEAETPEAPKQ 267
Score = 110 (43.8 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 38/147 (25%), Positives = 76/147 (51%)
Query: 242 EVRSKRDKSKKSTEGDGEGNTEGSKQVVLELP---TGALLKISDIKEPV-SREDIREVLE 297
++ S+ + K+ G G+ ++V + P TG ++KI ++P+ R+ ++++L
Sbjct: 408 KLESEMETESKAPPGSGQ-QCSTQEKVSAQGPQFVTGVIVKILS-EDPLPGRKQVKDILA 465
Query: 298 KVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVTGEEE 357
+ E+V+I+ G+ R+K +A+AV+ A EI K ++E+++G+ E
Sbjct: 466 TIS----EVVYIDLLEGDTECHARFKTPEDAQAVMNA--QTEIKKKH-SWNLEILSGDHE 518
Query: 358 QTVLDRMKIDIFKRRQKLMN--EKKSG 382
Q ++ +D R+ KL EKK G
Sbjct: 519 QRYWQKILVD---RQAKLNQPREKKRG 542
>UNIPROTKB|F1S150 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA EMBL:FP236150
Ensembl:ENSSSCT00000009986 Uniprot:F1S150
Length = 582
Score = 199 (75.1 bits), Expect = 9.0e-20, Sum P(2) = 9.0e-20
Identities = 71/260 (27%), Positives = 130/260 (50%)
Query: 17 AEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKD-DGWVELTTMLKFARLAKMTTEAK 75
+ V ++ I +Q++++F D NL +D+FL+ +I+K DG+V+++ ++ F ++ K+TT+ K
Sbjct: 29 SRVKQVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDRK 88
Query: 76 VIVDALKKSTSKLIEVNEDGTKIRRN-PEKELPTFDIDFVKDLIAQSLYVKYIPVDATLD 134
+I ALK S ++E++ +GT+IRR P E P KD +++YV+ +P +
Sbjct: 89 LIARALKSSA--VVELDLEGTRIRRKKPLGERP-------KDEDERTVYVELLPKNVNHS 139
Query: 135 DIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEK---FLNENKD 191
I+ F K + + I + +Y K K G FV F+ KE A K FLN +
Sbjct: 140 WIERVFGKCGN----VVYISIPHY--KSTGDPK--GFAFVEFETKEQAAKAIEFLNNPPE 191
Query: 192 KNLK----FNENCEHKNAEKF-LNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSK 246
+ + F + ++K + E K K K + I+ + + ++ K
Sbjct: 192 EAPRKPGIFPKTVKNKPIPTLRVAEEKKKKKKKKGRMKKEDNIQTKDSNTDTTSKDTVDK 251
Query: 247 RDKSKKSTEGDGEGNTEGSK 266
+S+ ++EG TE K
Sbjct: 252 VKRSRTTSEGSEVEVTEPQK 271
Score = 109 (43.4 bits), Expect = 9.0e-20, Sum P(2) = 9.0e-20
Identities = 39/163 (23%), Positives = 74/163 (45%)
Query: 232 QQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGALLKISDIKEPVSRED 291
+ E E V +K + + T G+ E + +G ++KI EP+ R+
Sbjct: 412 KSESEMETDHGVPNKLEMKNEKTNGEECCPQEKVNATGPQFVSGVIVKILST-EPLPRKQ 470
Query: 292 IREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEV 351
+R+ L + E+V+++ G+ R+K +A+AV+ A EI K +E+
Sbjct: 471 VRDTLAAIS----EVVYVDLLEGDTECHARFKTPEDAQAVITAY--TEIKKKHCW-KLEI 523
Query: 352 VTGEEEQTVLDRMKIDIFKRRQKLMNEKKSGRKFGKKGPRGTK 394
++G+ EQ ++ +D R+ KL ++ R K +G K
Sbjct: 524 LSGDHEQRYWQKILVD---RQAKLNQPREKRRGTDKLITKGEK 563
>UNIPROTKB|F1MR14 [details] [associations]
symbol:F1MR14 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA
EMBL:DAAA02016483 EMBL:DAAA02016480 EMBL:DAAA02016481
EMBL:DAAA02016482 IPI:IPI00691372 Ensembl:ENSBTAT00000012693
ArrayExpress:F1MR14 Uniprot:F1MR14
Length = 578
Score = 205 (77.2 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 73/261 (27%), Positives = 132/261 (50%)
Query: 17 AEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKD-DGWVELTTMLKFARLAKMTTEAK 75
+ V ++ I++Q++++F D NL +D+FL+ +I+K DG+V+++ ++ F ++ K+TT+ K
Sbjct: 27 SRVKQVLADIVKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGK 86
Query: 76 VIVDALKKSTSKLIEVNEDGTKIRRN-PEKELPTFDIDFVKDLIAQSLYVKYIPVDATLD 134
+I ALK S ++E++ +GT+IRR P E P KD +++YV+ +P +
Sbjct: 87 LIARALKSSA--VVELDLEGTRIRRKKPLGERP-------KDEDERTVYVELLPKNVNHS 137
Query: 135 DIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEK---FLNENKD 191
I+ F K + + I + +Y K K G FV F+ KE A K FLN +
Sbjct: 138 WIERVFGKCGN----VVYISIPHY--KSTGDPK--GFAFVEFETKEQAAKAIEFLNNPPE 189
Query: 192 KNLK----FNENCEHKNAEKF-LNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSK 246
+ + F + ++K + E K K K + I+ ++ + K+ K
Sbjct: 190 EAPRKPGVFPKTVKNKPIPALSVTEEKKKKKKKKGRTKKDDNIQTKESNMDASKESGCKK 249
Query: 247 RDKSKKSTEGDGEGNTEGSKQ 267
R S+ ++E TE KQ
Sbjct: 250 R--SRTTSESSEVEVTEPQKQ 268
Score = 101 (40.6 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 34/136 (25%), Positives = 65/136 (47%)
Query: 249 KSKKSTEGDGEGNTEGSKQVVLELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVF 308
K++K+ + G E + +G ++KI + R+ +R+ L + E+V+
Sbjct: 424 KNEKTANSEECGPQEKVNSAGPQFVSGVIVKIVSTEPLPGRKQVRDTLAAIS----EVVY 479
Query: 309 IEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVTGEEEQTVLDRMKIDI 368
++ G+ R+K +A+AV+ A EI K +E+++G+ EQ ++ +D
Sbjct: 480 VDLLEGDTECHARFKTPEDAQAVVTA--HSEIKKKHCW-QLEILSGDHEQRYWQKILVD- 535
Query: 369 FKRRQKLMN--EKKSG 382
R+ KL EKK G
Sbjct: 536 --RQAKLNQPREKKRG 549
Score = 37 (18.1 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 290 EDIREVLEKVQTDDQEIVFIEFN 312
E IR LEK Q Q I F E++
Sbjct: 558 EKIR--LEKTQQASQHIRFSEYD 578
>UNIPROTKB|Q4G0J3 [details] [associations]
symbol:LARP7 "La-related protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 EMBL:CH471057
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 HSSP:P05455 CTD:51574 HOGENOM:HOG000113284
HOVERGEN:HBG081891 KO:K15191 OrthoDB:EOG4TXBS0 InterPro:IPR014886
Pfam:PF08777 EMBL:EU667388 EMBL:AF068284 EMBL:BC066945
EMBL:BC107709 EMBL:AL049996 IPI:IPI00294742 IPI:IPI00395536
PIR:T08692 RefSeq:NP_001253968.1 RefSeq:NP_056269.1
RefSeq:NP_057732.2 UniGene:Hs.713663 ProteinModelPortal:Q4G0J3
SMR:Q4G0J3 DIP:DIP-47624N IntAct:Q4G0J3 MINT:MINT-4540675
STRING:Q4G0J3 PhosphoSite:Q4G0J3 DMDM:121945944 PaxDb:Q4G0J3
PRIDE:Q4G0J3 Ensembl:ENST00000324052 Ensembl:ENST00000344442
Ensembl:ENST00000509061 GeneID:51574 KEGG:hsa:51574 UCSC:uc003iay.3
GeneCards:GC04P113559 HGNC:HGNC:24912 HPA:HPA026842 HPA:HPA027930
MIM:612026 neXtProt:NX_Q4G0J3 PharmGKB:PA145148525
InParanoid:Q4G0J3 ChiTaRS:LARP7 GenomeRNAi:51574 NextBio:55403
ArrayExpress:Q4G0J3 Bgee:Q4G0J3 CleanEx:HS_LARP7
Genevestigator:Q4G0J3 Uniprot:Q4G0J3
Length = 582
Score = 211 (79.3 bits), Expect = 2.6e-19, Sum P(2) = 2.6e-19
Identities = 73/261 (27%), Positives = 134/261 (51%)
Query: 17 AEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKD-DGWVELTTMLKFARLAKMTTEAK 75
+ V ++ I +Q++++F D NL +D+FL+ +I+K DG+V+++ ++ F ++ K+TT+ K
Sbjct: 29 SRVKQVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGK 88
Query: 76 VIVDALKKSTSKLIEVNEDGTKIRRN-PEKELPTFDIDFVKDLIAQSLYVKYIPVDATLD 134
+I AL+ S ++E++ +GT+IRR P E P KD +++YV+ +P +
Sbjct: 89 LIARALRSSA--VVELDLEGTRIRRKKPLGERP-------KDEDERTVYVELLPKNVNHS 139
Query: 135 DIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEK---FLNENKD 191
I+ F K + + I + +Y K K G FV F+ KE A K FLN +
Sbjct: 140 WIERVFGKCGN----VVYISIPHY--KSTGDPK--GFAFVEFETKEQAAKAIEFLNNPPE 191
Query: 192 KNLK----FNENCEHKNAEKF-LNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSK 246
+ + F + ++K + E K K K + I+ ++E + + SK
Sbjct: 192 EAPRKPGIFPKTVKNKPIPALRVVEEKKKKKKKKGRMKKEDNIQAKEENMDTSNTSI-SK 250
Query: 247 RDKSKKSTEGDGEGNTEGSKQ 267
+S+ ++EG +TE KQ
Sbjct: 251 MKRSRPTSEGSDIESTEPQKQ 271
Score = 91 (37.1 bits), Expect = 2.6e-19, Sum P(2) = 2.6e-19
Identities = 29/111 (26%), Positives = 56/111 (50%)
Query: 274 TGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLK 333
+G ++KI + R+ +R+ L + E+++++ G+ R+K +A+AV+
Sbjct: 453 SGVIVKIISTEPLPGRKQVRDTLAAIS----EVLYVDLLEGDTECHARFKTPEDAQAVIN 508
Query: 334 ALGSKEIVIKDVKVSIEVVTGEEEQTVLDRMKIDIFKRRQKLMN--EKKSG 382
A EI K +E+++G+ EQ ++ +D R+ KL EKK G
Sbjct: 509 AY--TEINKKHCW-KLEILSGDHEQRYWQKILVD---RQAKLNQPREKKRG 553
>ZFIN|ZDB-GENE-030131-6896 [details] [associations]
symbol:larp7 "La ribonucleoprotein domain family,
member 7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6896 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715
EMBL:BC049455 IPI:IPI00509628 RefSeq:NP_956224.1 UniGene:Dr.29131
HSSP:Q7YZ92 ProteinModelPortal:Q7ZWE3 STRING:Q7ZWE3 PRIDE:Q7ZWE3
GeneID:334956 KEGG:dre:334956 CTD:51574 HOGENOM:HOG000113284
HOVERGEN:HBG081891 InParanoid:Q7ZWE3 KO:K15191 OrthoDB:EOG4TXBS0
NextBio:20810607 ArrayExpress:Q7ZWE3 InterPro:IPR014886
Pfam:PF08777 Uniprot:Q7ZWE3
Length = 555
Score = 207 (77.9 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
Identities = 52/170 (30%), Positives = 98/170 (57%)
Query: 17 AEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKD-DGWVELTTMLKFARLAKMTTEAK 75
+ V +L + + +Q+E++F D+NL +D+F++ I++ DG++++ + F R+ +T + K
Sbjct: 37 SRVKQLLSDVKKQVEFWFGDVNLHKDRFMKSIIEQSRDGYIDIAVLTTFNRMKNLTADVK 96
Query: 76 VIVDALKKSTSKLIEVNEDGTKIRRN-PEKELPTFDIDFVKDLIAQSLYVKYIPVDATLD 134
+I ALK ST ++EVN++GT+IRR P E P KD+ ++++YV+ +P T
Sbjct: 97 LIARALKNST--IVEVNDEGTRIRRKEPLGETP-------KDVDSRTVYVELLPKTVTHI 147
Query: 135 DIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEK 184
++ F K + I + Y+ + + KG FV F+ +E A+K
Sbjct: 148 WLERVFSKCGH----VVYISIPRYK----STRHSKGFAFVEFETQEQAQK 189
Score = 86 (35.3 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
Identities = 29/115 (25%), Positives = 61/115 (53%)
Query: 271 ELPTGALLKISDIKEPV-SREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAE 329
E +G ++KIS +P+ S+ I+++L ++ + +++ G+ VR+K +A+
Sbjct: 425 EFLSGVIVKIS-YNQPLPSKRCIKDMLSELSP----VAYVDLLDGDTEGHVRFKSSEDAQ 479
Query: 330 AVLKALGSKEIVIKDVKVSIEVVTGEEEQTVLDRMKIDIFKRRQKLMN--EKKSG 382
V+KA + K ++E+++G+ E+ ++ +D R+ KL EKK G
Sbjct: 480 KVIKARFEFQ---KKYNWNLELLSGDHERRYWQKILVD---RQAKLNTPREKKRG 528
Score = 41 (19.5 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 174 VTFDNKENAEKFLNENKDKNLKFNENCE 201
V F + E+A+K + + K+N N E
Sbjct: 470 VRFKSSEDAQKVIKARFEFQKKYNWNLE 497
>CGD|CAL0004304 [details] [associations]
symbol:orf19.2795 species:5476 "Candida albicans" [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000049 "tRNA binding" evidence=IEA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IEA] [GO:0034307
"regulation of ascospore formation" evidence=IEA] [GO:0042779 "tRNA
3'-trailer cleavage" evidence=IEA] InterPro:IPR002344
InterPro:IPR012677 PRINTS:PR00302 CGD:CAL0004304 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 EMBL:AACQ01000185 RefSeq:XP_711737.1
ProteinModelPortal:Q59PU8 STRING:Q59PU8 GeneID:3646665
KEGG:cal:CaO19.2795 Uniprot:Q59PU8
Length = 324
Score = 224 (83.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 84/298 (28%), Positives = 140/298 (46%)
Query: 23 ENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDALK 82
+ ++ +Q+E+YFSD NL DKFL + +DGWVEL T+L F R+ + E KVI ALK
Sbjct: 12 DEKVRKQVEFYFSDSNLQTDKFLWKIYESNDGWVELKTILTFGRMRQYRPEDKVI-SALK 70
Query: 83 KSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQS-LYVKYIPVDATLDDIKDFFK 141
+S ++ N D IRR K+ P D + VK+ ++ ++++ P D + DD++++
Sbjct: 71 ESKKLVLSANND--MIRR---KD-PIKDFNEVKNTRKRNTIHIEGFPKDLSQDDVENWVN 124
Query: 142 KNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFNENCE 201
+ + + + K +K+F G + + F +E+AE LN + L + E
Sbjct: 125 EKVIVQLPKEKEVCSIRRIKSRAKKEFFGVVDIEFKTQEDAEFILN---NVELSYPEGII 181
Query: 202 HKNAEKFLNENKD--KN---LKFNENCEHSL------LIKWQQEYHEE-----KKQEVRS 245
K + L E KD K L F E E S + K + ++E KK + +
Sbjct: 182 SKEDAQSL-EKKDLLKKMTLLTFQEMRESSKRFGVNEVTKRRNSFNENHKGGNKKFKKGN 240
Query: 246 KRDKSKKSTEGDGEGNTEGSKQVVLELPTGALLKISDIKEPVSREDIREVLEKVQTDD 303
K K + + GN K+ LE + +E ++E E EK +T +
Sbjct: 241 NNGKGKNNKNENDNGNGTEDKETKLEKVEEIDSTKENTEEVAAKETAPESTEKTETKE 298
>UNIPROTKB|F1NJ86 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00530000063464 EMBL:AADN02009328 IPI:IPI00598515
Ensembl:ENSGALT00000032138 ArrayExpress:F1NJ86 Uniprot:F1NJ86
Length = 233
Score = 205 (77.2 bits), Expect = 5.5e-16, P = 5.5e-16
Identities = 56/176 (31%), Positives = 103/176 (58%)
Query: 17 AEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKD-DGWVELTTMLKFARLAKMTTEAK 75
+ V ++ I +Q++++F D+NL +D+FL+ +I+K DG+V+++ ++ F ++ K+TT+ K
Sbjct: 31 SRVKQVLADIAKQVDFWFGDVNLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGK 90
Query: 76 VIVDALKKSTSKLIEVNEDGTKIRRN-PEKELPTFDIDFVKDLIAQSLYVKYIPVDATLD 134
+I A+K S+ ++E++ +GT+IRR P E P KD+ ++++YV+ +P +
Sbjct: 91 LIARAVKSSS--VVELDLEGTRIRRRRPLGERP-------KDVDSRTVYVELLPKNVNHS 141
Query: 135 DIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEK---FLN 187
I+ F K + + + + Y K K G FV F+ KE AEK FLN
Sbjct: 142 WIERVFGKCGN----VVYVSIPRY--KSTGDPK--GFAFVEFETKEQAEKAIEFLN 189
>UNIPROTKB|D6RFF0 [details] [associations]
symbol:LARP7 "La-related protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HOGENOM:HOG000113284
HGNC:HGNC:24912 ChiTaRS:LARP7 EMBL:AC106864 IPI:IPI00966774
ProteinModelPortal:D6RFF0 SMR:D6RFF0 Ensembl:ENST00000505034
ArrayExpress:D6RFF0 Bgee:D6RFF0 Uniprot:D6RFF0
Length = 299
Score = 211 (79.3 bits), Expect = 1.4e-15, P = 1.4e-15
Identities = 73/261 (27%), Positives = 134/261 (51%)
Query: 17 AEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKD-DGWVELTTMLKFARLAKMTTEAK 75
+ V ++ I +Q++++F D NL +D+FL+ +I+K DG+V+++ ++ F ++ K+TT+ K
Sbjct: 29 SRVKQVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGK 88
Query: 76 VIVDALKKSTSKLIEVNEDGTKIRRN-PEKELPTFDIDFVKDLIAQSLYVKYIPVDATLD 134
+I AL+ S ++E++ +GT+IRR P E P KD +++YV+ +P +
Sbjct: 89 LIARALRSSA--VVELDLEGTRIRRKKPLGERP-------KDEDERTVYVELLPKNVNHS 139
Query: 135 DIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEK---FLNENKD 191
I+ F K + + I + +Y K K G FV F+ KE A K FLN +
Sbjct: 140 WIERVFGKCGN----VVYISIPHY--KSTGDPK--GFAFVEFETKEQAAKAIEFLNNPPE 191
Query: 192 KNLK----FNENCEHKNAEKF-LNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSK 246
+ + F + ++K + E K K K + I+ ++E + + SK
Sbjct: 192 EAPRKPGIFPKTVKNKPIPALRVVEEKKKKKKKKGRMKKEDNIQAKEENMDTSNTSI-SK 250
Query: 247 RDKSKKSTEGDGEGNTEGSKQ 267
+S+ ++EG +TE KQ
Sbjct: 251 MKRSRPTSEGSDIESTEPQKQ 271
>DICTYBASE|DDB_G0281835 [details] [associations]
symbol:DDB_G0281835 species:44689 "Dictyostelium
discoideum" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 PRINTS:PR00302 PROSITE:PS50102
dictyBase:DDB_G0281835 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 EMBL:AAFI02000043
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 RefSeq:XP_640449.1 ProteinModelPortal:Q54TE0
EnsemblProtists:DDB0204237 GeneID:8623262 KEGG:ddi:DDB_G0281835
InParanoid:Q54TE0 OMA:HITEFTE Uniprot:Q54TE0
Length = 381
Score = 213 (80.0 bits), Expect = 6.6e-15, P = 6.6e-15
Identities = 93/402 (23%), Positives = 182/402 (45%)
Query: 24 NQIIEQIEYYFSDINLARDKFLQGEIK--KDDGWVELTTMLKFARLAKMTTEAKVIVDAL 81
N I + IE+YFSD NL +DKFL I+ ++DGW++L+ +L+F ++ + E + L
Sbjct: 7 NDIKKLIEFYFSDSNLRKDKFLFNLIQTNQNDGWIDLSIILEFQKIKSVINENSLTEQEL 66
Query: 82 KK--STSKLIEVNEDGTKIRRN--PEKELPTFDIDFVKDLIAQSLYVKYIPVD-ATLDDI 136
++ SKL+ +N+D KI+R P KEL +I K++ +++Y++ I +T D I
Sbjct: 67 EQVFKDSKLLILNQDKNKIKRIEWPIKELTQLEI---KEIDEKTIYIEPITNKISTPDLI 123
Query: 137 KDFF--KKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKF-----LNEN 189
+ ++ D N ++++ + K KG FV F NK+ A + LN +
Sbjct: 124 RKLLLLEQKIENDNNNNNELIQHISIPKFSDKTLKGFAFVEFSNKDIANQTIRNIDLNPS 183
Query: 190 KDKNL----KFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRS 245
K +NL KF E E K +LN N + LK + N + ++ + +
Sbjct: 184 KYENLIALSKF-EWSEKKKKFSYLN-NPSRYLKIS-NIPTIIQTNYKNNNNNNNNNNNNN 240
Query: 246 KRDKSKKSTEGDGEGNTEGSKQVVLELPTG-ALLKISDIKEPVSREDIREVLEKVQTDDQ 304
K D + D + + E +V++ + KI + +P + E QT
Sbjct: 241 KNDGGDDDDDDDEDDDDE---LIVIDSTNDKSCTKILKMNKPCLWKFFDE-----QTSIT 292
Query: 305 EIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVTGEEEQTVLDRM 364
+ F+++ G A +++ + + + + + + ++K+ ++ ++
Sbjct: 293 -VSFLDYISGSDKAILKFSSQLDIQNAID-----QFQLGEIKLYNNILN------IIHLS 340
Query: 365 KIDIFKRRQKLMNEKKSGRKFGKKGPRGTKRSRGGNFESNKK 406
+I +Q+ + +KS KFG + + N+ K+
Sbjct: 341 DSEINSLKQRTQSHEKS--KFGNQKNNNNNNNNNKNYNKRKR 380
>UNIPROTKB|E2QW27 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA
EMBL:AAEX03016829 ProteinModelPortal:E2QW27
Ensembl:ENSCAFT00000018607 Uniprot:E2QW27
Length = 582
Score = 210 (79.0 bits), Expect = 4.6e-14, P = 4.6e-14
Identities = 87/317 (27%), Positives = 159/317 (50%)
Query: 17 AEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKD-DGWVELTTMLKFARLAKMTTEAK 75
+ V ++ I +Q++++F D NL +D+FL+ +I+K DG+V+++ ++ F ++ K+TT+ K
Sbjct: 28 SRVKQVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGK 87
Query: 76 VIVDALKKSTSKLIEVNEDGTKIRRN-PEKELPTFDIDFVKDLIAQSLYVKYIPVDATLD 134
+I ALK S+ ++E++ +GT+IRR P E P KD +++YV+ +P +
Sbjct: 88 LIARALKSSS--VVELDLEGTRIRRKKPLGERP-------KDEDERTVYVELLPKNVNHS 138
Query: 135 DIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEK---FLNENKD 191
I+ F K + + I + +Y K K G FV F+ KE A K FLN +
Sbjct: 139 WIERVFGKCGN----VVYISIPHY--KSTGDPK--GFAFVEFETKEQAAKAIEFLNNPPE 190
Query: 192 KNLK----FNENCEHKNAEKF-LNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSK 246
+ + F + ++K ++E K K K + I+ ++ + K+ V +K
Sbjct: 191 EAPRKPGVFPKTVKNKPIPVLRVSEEKKKKKKKKGRMKKEDSIQTKELNTDTDKESV-AK 249
Query: 247 RDKSKKSTEGDGEGNTEGSK-----------QVVLELP---TGALLK-ISDIKE-PVSRE 290
+S+ ++EG TE K Q V LP TG + IS+ E P R
Sbjct: 250 MKRSRTTSEGSEVEITEPQKPPSKKKKKRERQEVSSLPIVRTGKRKRSISEEAESPTPRS 309
Query: 291 DIREVLEK-VQTDDQEI 306
+++ +K ++ +D E+
Sbjct: 310 KVKKGTQKDIKKEDLEV 326
>TAIR|locus:2017809 [details] [associations]
symbol:La2 "La protein 2" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0000278
"mitotic cell cycle" evidence=RCA] [GO:0006396 "RNA processing"
evidence=RCA] [GO:0009410 "response to xenobiotic stimulus"
evidence=RCA] [GO:0048522 "positive regulation of cellular process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 UniGene:At.27554 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 InterPro:IPR014886 Pfam:PF08777 EMBL:BT026473
IPI:IPI00529259 RefSeq:NP_178106.2 UniGene:At.34029
ProteinModelPortal:Q0V7U7 SMR:Q0V7U7 STRING:Q0V7U7 PaxDb:Q0V7U7
PRIDE:Q0V7U7 EnsemblPlants:AT1G79880.1 GeneID:844327
KEGG:ath:AT1G79880 TAIR:At1g79880 HOGENOM:HOG000239251
InParanoid:Q0V7U7 OMA:INGEMER PhylomeDB:Q0V7U7
ProtClustDB:CLSN2680670 Genevestigator:Q0V7U7 Uniprot:Q0V7U7
Length = 399
Score = 199 (75.1 bits), Expect = 3.3e-13, P = 3.3e-13
Identities = 90/417 (21%), Positives = 191/417 (45%)
Query: 25 QIIEQIEYYFSDINLARDKFLQGEIKKD-DGWVELTTMLKFARLAKMTTEAKV------- 76
+++ Q+E+YFSD NL D FL E+ K DG V L + F+R+ + +
Sbjct: 12 KLLTQVEFYFSDSNLPTDGFLNREVTKSKDGLVSLPLVCSFSRMRNLLGLGNINREDIPP 71
Query: 77 -IVDALKK--STSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDATL 133
IV+ + TS ++V+ +G +I R + P + ++ + ++L +
Sbjct: 72 RIVEEVANLLRTSDFLKVSNNGQRIGRGTKLSKPE---EVLEQVHRRTLAASPFEYSIKM 128
Query: 134 DDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNEN---- 189
+D+ FF S+ K+ ++ + +A++++F G+ V F ++++ + L ++
Sbjct: 129 EDVSSFF----SQYAKVNSVRL---PPNIADKRRFCGTALVEFSSEQDTQDILRQSLVYA 181
Query: 190 -KDKNL--KFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKW----QQEYHEEK--- 239
D L K + +C+ +N K L +++ N +F +KW ++ ++EK
Sbjct: 182 GADLVLIPKSDFDCQRENMIKQLGKSESHN-EFRRGQIVKFALKWIASEEKVTNKEKPSA 240
Query: 240 -KQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGALLKISDIKEPVSREDIREVLEK 298
K +++ K DK + + E + + ++ + VS E ++++ ++
Sbjct: 241 LKNKIKEKEDKETGIADREKENGDNSCASLCKDNTDQLVVPPWNNSNSVSSEVLKDLFQR 300
Query: 299 VQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKE----IVIKD-VKVSIEVVT 353
+ + IE++ G + +V + ++E +KA + E +V+K+ V++E +
Sbjct: 301 FGS----VEHIEYSGGLDSGYVWF---TDSETAMKARAAVEFVGGLVVKNNFSVALEAIN 353
Query: 354 GEEEQTVLDRMKIDIFKRRQKLMNEKKSGRKFGKKGPRGTKRSRGGNFESNKKAKVE 410
GE E+ +++KR L + + G K G K +G K N + KKA+ E
Sbjct: 354 GEMER--------ELWKR---LSSAELEGGKEGHKKEKG-KDECFENVQPTKKARKE 398
>UNIPROTKB|I3LNK9 [details] [associations]
symbol:I3LNK9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464
Ensembl:ENSSSCT00000031777 OMA:NASEECE Uniprot:I3LNK9
Length = 580
Score = 199 (75.1 bits), Expect = 7.8e-13, P = 7.8e-13
Identities = 71/260 (27%), Positives = 130/260 (50%)
Query: 17 AEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKD-DGWVELTTMLKFARLAKMTTEAK 75
+ V ++ I +Q++++F D NL +D+FL+ +I+K DG+V+++ ++ F ++ K+TT+ K
Sbjct: 29 SRVKQVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDRK 88
Query: 76 VIVDALKKSTSKLIEVNEDGTKIRRN-PEKELPTFDIDFVKDLIAQSLYVKYIPVDATLD 134
+I ALK S ++E++ +GT+IRR P E P KD +++YV+ +P +
Sbjct: 89 LIARALKSSA--VVELDLEGTRIRRKKPLGERP-------KDEDERTVYVELLPKNVNHS 139
Query: 135 DIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEK---FLNENKD 191
I+ F K + + I + +Y K K G FV F+ KE A K FLN +
Sbjct: 140 WIERVFGKCGN----VVYISIPHY--KSTGDPK--GFAFVEFETKEQAAKAIEFLNNPPE 191
Query: 192 KNLK----FNENCEHKNAEKF-LNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSK 246
+ + F + ++K + E K K K + I+ + + ++ K
Sbjct: 192 EAPRKPGIFPKTVKNKPIPTLRVAEEKKKKKKKKGRMKKEDNIQTKDSNTDTTSKDTVDK 251
Query: 247 RDKSKKSTEGDGEGNTEGSK 266
+S+ ++EG TE K
Sbjct: 252 VKRSRTTSEGSEVEVTEPQK 271
>SGD|S000002209 [details] [associations]
symbol:LHP1 "RNA binding protein required for maturation of
tRNA and U6 snRNA" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0000049 "tRNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0008033 "tRNA processing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 SGD:S000002209 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006938 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0030529 GO:GO:0008033 GO:GO:0000049
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 KO:K11090
OrthoDB:EOG43JGF6 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00530000063464 EMBL:L33023 EMBL:Z74099 EMBL:AY558373
EMBL:L13282 EMBL:X80801 PIR:B48600 RefSeq:NP_010232.1
ProteinModelPortal:P33399 SMR:P33399 DIP:DIP-6444N IntAct:P33399
MINT:MINT-652314 STRING:P33399 PaxDb:P33399 PeptideAtlas:P33399
EnsemblFungi:YDL051W GeneID:851509 KEGG:sce:YDL051W CYGD:YDL051w
OMA:NDGWVEL NextBio:968869 Genevestigator:P33399 GermOnline:YDL051W
Uniprot:P33399
Length = 275
Score = 182 (69.1 bits), Expect = 5.2e-12, P = 5.2e-12
Identities = 71/272 (26%), Positives = 133/272 (48%)
Query: 3 ETDSSATNGNSGAEAEVS-KLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTM 61
E + + NS A E + ++ ++ ++Q+E+YFS+ N D+FL+ +K+DGWV ++T+
Sbjct: 9 EQEKPQSRRNSFAVIEFTPEVLDRCLKQVEFYFSEFNFPYDRFLRTTAEKNDGWVPISTI 68
Query: 62 LKFARLAKMTTEAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQS 121
F R+ K KVI +AL+ +S+++EV+ DG ++R +L ++ ++
Sbjct: 69 ATFNRMKKYRPVDKVI-EALR--SSEILEVSADGENVKRRVPLDLTAARNARIEQN-QRT 124
Query: 122 LYVKYIP---VDATL-----DDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIF 173
L V P V+A+ ++++ FFKK E I + +R +D KKF G++
Sbjct: 125 LAVMNFPHEDVEASQIPELQENLEAFFKK-LGE---INQVRLR--RDH--RNKKFNGTVL 176
Query: 174 VTFDNKENAEKFLNENKDKNLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQ 233
V F E FL + + + NE ++ + + K +L+ E + +
Sbjct: 177 VEFKTIPECEAFLKSYSNDD-ESNEILSYEGKKLSVLTKKQFDLQ-REASKSKNFSGRSR 234
Query: 234 EYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGS 265
++ KK+ + K K+KK G E + S
Sbjct: 235 SFNGHKKKNL-PKFPKNKKKN-GKEESKEDSS 264
>TAIR|locus:2170478 [details] [associations]
symbol:LARP6a "La related protein 6a" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0006944 "cellular membrane fusion" evidence=RCA] [GO:0048193
"Golgi vesicle transport" evidence=RCA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 HSSP:P19339 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 KO:K15191 HOGENOM:HOG000244026
EMBL:AY050403 EMBL:BT000588 IPI:IPI00526923 RefSeq:NP_851141.1
UniGene:At.9180 ProteinModelPortal:Q94A38 SMR:Q94A38 IntAct:Q94A38
STRING:Q94A38 PRIDE:Q94A38 EnsemblPlants:AT5G46250.1 GeneID:834667
KEGG:ath:AT5G46250 TAIR:At5g46250 InParanoid:Q94A38 OMA:WRNGMRV
PhylomeDB:Q94A38 ProtClustDB:CLSN2680453 Genevestigator:Q94A38
Uniprot:Q94A38
Length = 422
Score = 185 (70.2 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 62/206 (30%), Positives = 108/206 (52%)
Query: 14 GAEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDD-GWVELTTMLKFARLAKMTT 72
G + +L +II Q+EYYFSD NL DKFL +K++ G+V ++T+ F ++ K+T
Sbjct: 95 GVVVPIDELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTR 154
Query: 73 EAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDAT 132
+ +IV ALK+S+ ++ +E K R +P LP ++D ++ V+ +P D +
Sbjct: 155 DHALIVSALKESSFLVVSADEKKVK-RLSP---LPE-----IRDPKIFTVLVENLPEDHS 205
Query: 133 LDDIKDFFKKNTS-EDVKITNIIMRNYQDKLANQKKF---KGSIFVTFDNKENAEKF--- 185
++I++ F K S + V I + +K ++ F + FV ++ E AEK
Sbjct: 206 NENIREIFGKAGSIKSVSICDPNAVEESEKGGKKENFIRTRLHAFVEYETVEAAEKAAAT 265
Query: 186 LNENKD-KN---LKFNENCEHKNAEK 207
LN +D +N +K E K A++
Sbjct: 266 LNNEQDWRNGLRVKLLEQAAGKFAQR 291
>UNIPROTKB|D6RAF3 [details] [associations]
symbol:LARP7 "La-related protein 7" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR002344 PRINTS:PR00302
GO:GO:0005634 GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HGNC:HGNC:24912
ChiTaRS:LARP7 EMBL:AC106864 IPI:IPI00966387
ProteinModelPortal:D6RAF3 SMR:D6RAF3 Ensembl:ENST00000507443
HOGENOM:HOG000213946 ArrayExpress:D6RAF3 Bgee:D6RAF3 Uniprot:D6RAF3
Length = 129
Score = 164 (62.8 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 33/93 (35%), Positives = 64/93 (68%)
Query: 17 AEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKD-DGWVELTTMLKFARLAKMTTEAK 75
+ V ++ I +Q++++F D NL +D+FL+ +I+K DG+V+++ ++ F ++ K+TT+ K
Sbjct: 29 SRVKQVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGK 88
Query: 76 VIVDALKKSTSKLIEVNEDGTKIRRN-PEKELP 107
+I AL+ S ++E++ +GT+IRR P E P
Sbjct: 89 LIARALRSSA--VVELDLEGTRIRRKKPLGERP 119
>UNIPROTKB|D6RF49 [details] [associations]
symbol:LARP7 "La-related protein 7" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR002344 PRINTS:PR00302
GO:GO:0005634 GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HGNC:HGNC:24912
ChiTaRS:LARP7 EMBL:AC106864 IPI:IPI00967495
ProteinModelPortal:D6RF49 SMR:D6RF49 Ensembl:ENST00000508577
ArrayExpress:D6RF49 Bgee:D6RF49 Uniprot:D6RF49
Length = 119
Score = 164 (62.8 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 33/93 (35%), Positives = 64/93 (68%)
Query: 17 AEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKD-DGWVELTTMLKFARLAKMTTEAK 75
+ V ++ I +Q++++F D NL +D+FL+ +I+K DG+V+++ ++ F ++ K+TT+ K
Sbjct: 29 SRVKQVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGK 88
Query: 76 VIVDALKKSTSKLIEVNEDGTKIRRN-PEKELP 107
+I AL+ S ++E++ +GT+IRR P E P
Sbjct: 89 LIARALRSSA--VVELDLEGTRIRRKKPLGERP 119
>FB|FBgn0033936 [details] [associations]
symbol:CG17386 species:7227 "Drosophila melanogaster"
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR012677
EMBL:AE013599 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 InterPro:IPR024642 Pfam:PF12901
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
eggNOG:NOG239004 GeneTree:ENSGT00510000048191 EMBL:BT044172
RefSeq:NP_610964.1 UniGene:Dm.24512 SMR:A1Z9R1
EnsemblMetazoa:FBtr0087488 GeneID:36605 KEGG:dme:Dmel_CG17386
UCSC:CG17386-RA FlyBase:FBgn0033936 InParanoid:A1Z9R1 OMA:RTIVACD
OrthoDB:EOG4D51CP GenomeRNAi:36605 NextBio:799463 Uniprot:A1Z9R1
Length = 867
Score = 166 (63.5 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 38/122 (31%), Positives = 78/122 (63%)
Query: 21 KLENQIIEQIEYYFSDINLARDKFLQGEIKKD-DGWVELTTMLKFARLAKMTTEAKVIVD 79
+L +I + +E+YFS+ ++ +D FL ++++ +G+V L + F R+ ++T E KV+ D
Sbjct: 280 ELAAEITDAVEFYFSNESILKDAFLLKHVRRNKEGFVSLKLVSSFKRVRQLTREWKVVGD 339
Query: 80 ALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDA-TLDDIKD 138
A+++ + K IE+N+ GTK+RR + LP+FD + + ++++ +P+D T++ + D
Sbjct: 340 AVRRKSRK-IELNDVGTKVRRI--EPLPSFD----ETMPSRTIVACDLPLDKLTIEKVSD 392
Query: 139 FF 140
F
Sbjct: 393 LF 394
Score = 56 (24.8 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 385 FGKKGPRGTKRSRGGNFESNKK 406
FG +G G+ RSR G+F SN K
Sbjct: 780 FGSEGFEGSPRSRTGSFLSNYK 801
>UNIPROTKB|E1BVY8 [details] [associations]
symbol:LOC420093 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR002344 PRINTS:PR00302 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00510000048191 EMBL:AADN02072211 IPI:IPI00821190
Ensembl:ENSGALT00000041247 Uniprot:E1BVY8
Length = 173
Score = 149 (57.5 bits), Expect = 7.5e-10, P = 7.5e-10
Identities = 31/81 (38%), Positives = 55/81 (67%)
Query: 21 KLENQIIEQIEYYFSDINLARDKFLQGEIKKDD-GWVELTTMLKFARLAKMTTEAKVIVD 79
+L +I+ Q+E+Y SD NLA+D FL ++K+ G+V + + F ++ +T + ++ +
Sbjct: 76 QLIRRIVSQVEFYLSDENLAKDAFLLKHVQKNKLGFVSIKLLTSFKKVKYLTRDWRLTLY 135
Query: 80 ALKKSTSKLIEVNEDGTKIRR 100
AL+ SKL+EVN++GTK+RR
Sbjct: 136 ALR--FSKLLEVNQEGTKVRR 154
>TAIR|locus:2125702 [details] [associations]
symbol:La1 "La protein 1" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;ISS;IDA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005618 "cell wall"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0000478 "endonucleolytic cleavage
involved in rRNA processing" evidence=RCA] [GO:0006406 "mRNA export
from nucleus" evidence=RCA] [GO:0006606 "protein import into
nucleus" evidence=RCA] [GO:0009220 "pyrimidine ribonucleotide
biosynthetic process" evidence=RCA] [GO:0009561 "megagametogenesis"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0048825
"cotyledon development" evidence=RCA] [GO:0051301 "cell division"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005618 GO:GO:0005654 EMBL:CP002687
GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 KO:K11090 Pfam:PF05383
SMART:SM00715 HSSP:P05455 InterPro:IPR014886 Pfam:PF08777
EMBL:AY056237 IPI:IPI00530410 RefSeq:NP_567904.1 UniGene:At.2236
ProteinModelPortal:Q93ZV7 SMR:Q93ZV7 STRING:Q93ZV7 PRIDE:Q93ZV7
EnsemblPlants:AT4G32720.1 GeneID:829408 KEGG:ath:AT4G32720
TAIR:At4g32720 InParanoid:Q93ZV7 OMA:LPRDNFL PhylomeDB:Q93ZV7
ProtClustDB:CLSN2689721 Genevestigator:Q93ZV7 Uniprot:Q93ZV7
Length = 433
Score = 169 (64.5 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 78/303 (25%), Positives = 138/303 (45%)
Query: 26 IIEQIEYYFSDINLARDKFLQGEI-KKDDGWVELTTMLKFARLA---KMTTEA------- 74
++ Q+E+YFSD NL D FL+ + + +DG V L + F+++ K+
Sbjct: 14 VLRQVEFYFSDSNLPIDDFLKKTVTESEDGLVSLALICSFSKMRGYLKLGDSKGDDIPED 73
Query: 75 --KVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDAT 132
K + D L+ TS +++++DG K+ R+ E L + D ++ L A+++ D
Sbjct: 74 TIKAVADTLR--TSSALKISDDGKKVGRSTE--LLKLE-DLIEQLNARTVAASPFSYDVK 128
Query: 133 LDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNEN--- 189
+D++ FF S+ K+ ++ M + +A + F G V F +E+A+ + +N
Sbjct: 129 REDVESFF----SQYGKVNSVRMPRH---VAESRIFSGVALVEFPTEEDAQNVMKQNLVF 181
Query: 190 --KDKNLKFN---ENCEHKNAEKFLNENKDKNLKFNEN-CEHSLLIKWQQEYHEEKKQEV 243
++ LK +N K+ KF N K +N +H ++ +Y K +
Sbjct: 182 AGQELELKPKKEFDNEREKDEVKFANYQPQKGSANQKNGSDHKNNSAYEPDY---PKGLI 238
Query: 244 RSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGALLKISDIKEPVSREDI-REVLEKVQTD 302
S K+S E EG TE Q E PT ++ S+ K P D +E +VQ +
Sbjct: 239 ISFT--LKRSAE---EGTTE---QKSSEEPTDKTMEESETK-PADTPDADKENTGEVQAE 289
Query: 303 DQE 305
E
Sbjct: 290 GAE 292
Score = 148 (57.2 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 72/249 (28%), Positives = 114/249 (45%)
Query: 176 FDN-KENAE-KFLNENKDKNLKFNEN-CEHKNAEKFLNEN-KDKNLKFN--ENCEHSLLI 229
FDN +E E KF N K +N +HKN + + K + F + E
Sbjct: 194 FDNEREKDEVKFANYQPQKGSANQKNGSDHKNNSAYEPDYPKGLIISFTLKRSAEEGTTE 253
Query: 230 -KWQQEYHEEKKQEVRSK-RDKSKKSTEGDGEGNTEGSKQVVLELPT-GALLKISDIKEP 286
K +E ++ +E +K D E GE EG++ E GAL D K+
Sbjct: 254 QKSSEEPTDKTMEESETKPADTPDADKENTGEVQAEGAEDEDDEKEEKGALATHKDNKDV 313
Query: 287 VSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKK-ENNAEAVLKALGSKE--IVIK 343
V RED++ V K ++ F++F +G T ++R+ + E + +A A+ + E + +K
Sbjct: 314 VLREDLKAVFGKFG----DVKFVDFKMGSETGYLRFDEPEASQKARAAAVLANEGGLAVK 369
Query: 344 DVKVSIEVVTGEEEQT--VLDRMKIDIFKRRQKLMNEKKSGRKFGKKGPRGTKRSRGGNF 401
+ +E V GE E+ L R K D F + + + G +FG+K RG+ S GG +
Sbjct: 370 NFIAVLEPVIGEAEKEYWTLLRSK-DRFDKGGRGGRGGRRGGRFGRK--RGSD-SPGGRW 425
Query: 402 ESNKKAKVE 410
NK KVE
Sbjct: 426 --NKSQKVE 432
>FB|FBgn0260771 [details] [associations]
symbol:Larp7 "La related protein 7" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0097322 "7SK snRNA binding" evidence=IDA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
EMBL:AE014298 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 KO:K15191
InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
GO:GO:0097322 EMBL:AY061107 RefSeq:NP_524795.2 UniGene:Dm.31047
SMR:Q9W362 IntAct:Q9W362 STRING:Q9W362 EnsemblMetazoa:FBtr0301275
GeneID:44900 KEGG:dme:Dmel_CG42569 UCSC:CG12058-RA
FlyBase:FBgn0260771 InParanoid:Q9W362 OMA:PGLIVEC OrthoDB:EOG4CVDQ5
GenomeRNAi:44900 NextBio:837804 Uniprot:Q9W362
Length = 595
Score = 171 (65.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 72/283 (25%), Positives = 133/283 (46%)
Query: 2 AETDSSATNGNSGAEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTM 61
A D+S + G + + L N I Q+E+YF D NL++D+FL+ +++D +V L
Sbjct: 40 APEDASPDKKDGGRKRK-RHLFNSIRGQMEFYFGDANLSKDRFLRRYVEQDP-YVPLEIF 97
Query: 62 LKFARLAKMTTEAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQS 121
L F ++ +T + + I AL S S+L+E++E K++R + LP +D+ ++
Sbjct: 98 LTFNKIKTLTQDVQQIAKAL--SNSQLLELDETELKVKRRTK--LPD-----QRDVNDKT 148
Query: 122 LYVKYIPVDATLDDIKDFFKK----------NTSEDVKITNIIMRNYQDKLANQKKFKGS 171
LYV+ +P +AT D +K+ F + + KI ++ + +K K
Sbjct: 149 LYVEALPANATHDWLKEVFSRYGPVAYVSLPHYPGTKKIKEFAFIEFEKSGSLEKAVKA- 207
Query: 172 IFVTFDNKENAEKFLNENKD-KNLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIK 230
F + E ++ ++ + + + K AE+ +E + L N + K
Sbjct: 208 -FAQIQGVLSVETDPSDLASVRSFQQQQQIQQK-AEQPQSEAEQVELP-KRNLKREATDK 264
Query: 231 WQQEYHEEKKQEVRSKRDKSKKSTEG------DGEGNTEGSKQ 267
++E HE K+ ++ + S+ ST G D EG E S+Q
Sbjct: 265 DREEIHEVKRVKLEEGQP-SETSTAGETASETDAEGTAEASEQ 306
>ASPGD|ASPL0000060980 [details] [associations]
symbol:AN1045 species:162425 "Emericella nidulans"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:AACD01000016
EMBL:BN001308 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 KO:K11090
OrthoDB:EOG43JGF6 Pfam:PF05383 SMART:SM00715 RefSeq:XP_658649.1
ProteinModelPortal:Q5BEI5 STRING:Q5BEI5
EnsemblFungi:CADANIAT00001597 GeneID:2876822 KEGG:ani:AN1045.2
HOGENOM:HOG000206315 OMA:EVQKDAR Uniprot:Q5BEI5
Length = 400
Score = 157 (60.3 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 57/172 (33%), Positives = 86/172 (50%)
Query: 25 QIIEQIEYYFSDINLARDKFLQGEIK-KDDGWVELTTMLKFARLAKMTTEAKVIVDALKK 83
+I +Q+E+YFSD NL DKFL ++ + V L + F R+ + + IV+ALK
Sbjct: 108 EIRKQVEFYFSDSNLPMDKFLLSKVGGSKNNPVPLELLHSFKRMRRFQPFS-AIVEALKN 166
Query: 84 STSKLIEVNEDGTKIRRN---PEKELPTFDIDFVK----DLIAQSLYVKYIPVDA--TLD 134
S + +E+ ++ T +RR PE T D VK +A+S+Y K + T
Sbjct: 167 SET--LELTDNDTAVRRKVPLPETVKDTHDPTVVKVFEDKAMARSIYAKGFGEETPTTQL 224
Query: 135 DIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFL 186
DI+ FF I I +R N+K FKGS+FV F ++E + FL
Sbjct: 225 DIEAFFAPYGP----INAIRLRR-----TNEKYFKGSVFVEFASEEKQKAFL 267
Score = 40 (19.1 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 388 KGPRGTKRSRGGNFESNK 405
+G RG + RGG ++N+
Sbjct: 315 RGGRGGRGGRGGRRDNNR 332
>TAIR|locus:2156912 [details] [associations]
symbol:LARP1b "AT5G66100" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] [GO:0010150 "leaf senescence"
evidence=IMP] EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010150
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 EMBL:AY091765 EMBL:AY149955 IPI:IPI00523817
RefSeq:NP_201411.2 UniGene:At.9216 ProteinModelPortal:Q8RWR2
SMR:Q8RWR2 PaxDb:Q8RWR2 PRIDE:Q8RWR2 EnsemblPlants:AT5G66100.1
GeneID:836742 KEGG:ath:AT5G66100 TAIR:At5g66100
HOGENOM:HOG000149120 InParanoid:Q8RWR2 OMA:DQMNDEG PhylomeDB:Q8RWR2
ProtClustDB:CLSN2915016 Genevestigator:Q8RWR2 Uniprot:Q8RWR2
Length = 453
Score = 148 (57.2 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 31/79 (39%), Positives = 54/79 (68%)
Query: 22 LENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDAL 81
L N+I+ Q+EYYFS NL+RD+ L+ ++ D+GWV + + F RLA++T + I++AL
Sbjct: 335 LYNKILTQVEYYFSADNLSRDEHLRDQMN-DEGWVPVRVIAAFRRLAELTNNIQTILEAL 393
Query: 82 KKSTSKLIEVNEDGTKIRR 100
+ +S+++E+ G +RR
Sbjct: 394 R--SSEVVEIQ--GETLRR 408
Score = 45 (20.9 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 4 TDSSATNGNSGAEAEVSKLENQII 27
T +++TN N+G+ + EN +
Sbjct: 138 TSNTSTNANAGSSVSATSSENSAV 161
>UNIPROTKB|F1P339 [details] [associations]
symbol:LARP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0016239 "positive regulation of macroautophagy"
evidence=IEA] Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016239
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
InterPro:IPR006607 SMART:SM00684 OMA:GSEPATY
GeneTree:ENSGT00390000000523 EMBL:AADN02028672 IPI:IPI00590067
Ensembl:ENSGALT00000006374 Uniprot:F1P339
Length = 927
Score = 140 (54.3 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 34/87 (39%), Positives = 54/87 (62%)
Query: 22 LENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDAL 81
L++ I QIEYYFS NL RD FL+ ++ D G++ +T + F R+ +TT+ +I+ AL
Sbjct: 242 LKDYIKRQIEYYFSVDNLERDFFLRRKMDSD-GFLPITLIASFHRVQALTTDISLIIKAL 300
Query: 82 KKSTSKLIEVNEDGTKIRRNPEK-ELP 107
K S K++E+ + + + PEK LP
Sbjct: 301 KDS--KVVEIVDQKIRRKEQPEKWALP 325
Score = 52 (23.4 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 21/103 (20%), Positives = 44/103 (42%)
Query: 208 FLNENKDKNLKFNENCEHSLL-IKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGN--TEG 264
FL +K KNL N + L K +++ + + ++ GDG ++
Sbjct: 826 FLKYSKAKNLDINSKLQEYLSKFKRLEDFRVDPPMGEEGGHKRYPTTSGGDGRKRYPSQS 885
Query: 265 SKQVVLELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIV 307
S + V + P+ S +P ++ED + + ++V + + V
Sbjct: 886 SSKTVSQCPSSQAHASSS--QP-AQEDAKNLSQQVPAVESQTV 925
Score = 41 (19.5 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 19/82 (23%), Positives = 35/82 (42%)
Query: 180 ENAEKFLNENKD--KNLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEY-- 235
++ KF + + + K F ++ HK + LNE K L ++ E + L ++ +
Sbjct: 697 QSLPKFQHPSHELLKENGFTQHVYHKYRRRCLNERK--RLGIGQSQEMNTLFRFWSFFLR 754
Query: 236 -HEEKKQEVRSKRDKSKKSTEG 256
H KK K+ + EG
Sbjct: 755 DHFNKKMYEEFKQLAVEDGKEG 776
>UNIPROTKB|F1MBD0 [details] [associations]
symbol:LARP6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 GO:GO:0005634 GO:GO:0005794 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR024642
Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 OMA:TSGGENE GeneTree:ENSGT00510000048191
EMBL:DAAA02027971 IPI:IPI00826749 Ensembl:ENSBTAT00000005109
ArrayExpress:F1MBD0 Uniprot:F1MBD0
Length = 425
Score = 141 (54.7 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 34/106 (32%), Positives = 61/106 (57%)
Query: 21 KLENQIIEQIEYYFSDINLARDKFLQGEIKKDD-GWVELTTMLKFARLAKMTTEAKVIVD 79
+L ++++QIE+YFSD NL +D FL ++++ G+V + + F ++ +T + +
Sbjct: 24 ELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTAH 83
Query: 80 ALKKSTSKLIEVNEDGTKIRRN-PEKELPTFDIDFVKDLIAQSLYV 124
ALK S + +E+NED K+RR P P ++ K L+ LY+
Sbjct: 84 ALKYSVT--LELNEDHRKVRRTTPVPLFPNENLPS-KMLLVYDLYL 126
>UNIPROTKB|Q9BRS8 [details] [associations]
symbol:LARP6 "La-related protein 6" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302
PROSITE:PS50102 GO:GO:0005634 GO:GO:0005794 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 EMBL:AF443828 EMBL:AF443829
EMBL:AK002058 EMBL:AL833876 EMBL:AC009269 EMBL:AC090868
EMBL:BC006082 EMBL:BC009446 EMBL:BC014018 EMBL:BC039153
IPI:IPI00377127 IPI:IPI00414661 RefSeq:NP_060827.2
RefSeq:NP_932062.1 UniGene:Hs.416755 HSSP:P05455
ProteinModelPortal:Q9BRS8 SMR:Q9BRS8 STRING:Q9BRS8
PhosphoSite:Q9BRS8 DMDM:74752287 PaxDb:Q9BRS8 PRIDE:Q9BRS8
Ensembl:ENST00000299213 Ensembl:ENST00000344870 GeneID:55323
KEGG:hsa:55323 UCSC:uc002ass.3 CTD:55323 GeneCards:GC15M071123
HGNC:HGNC:24012 HPA:HPA020338 MIM:611300 neXtProt:NX_Q9BRS8
PharmGKB:PA142671568 eggNOG:NOG239004 HOGENOM:HOG000010108
HOVERGEN:HBG070244 InParanoid:Q9BRS8 OMA:TSGGENE OrthoDB:EOG4NGGMP
ChiTaRS:LARP6 GenomeRNAi:55323 NextBio:59586 ArrayExpress:Q9BRS8
Bgee:Q9BRS8 CleanEx:HS_LARP6 Genevestigator:Q9BRS8 Uniprot:Q9BRS8
Length = 491
Score = 141 (54.7 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 34/106 (32%), Positives = 61/106 (57%)
Query: 21 KLENQIIEQIEYYFSDINLARDKFLQGEIKKDD-GWVELTTMLKFARLAKMTTEAKVIVD 79
+L ++++QIE+YFSD NL +D FL ++++ G+V + + F ++ +T + +
Sbjct: 91 ELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTAH 150
Query: 80 ALKKSTSKLIEVNEDGTKIRRN-PEKELPTFDIDFVKDLIAQSLYV 124
ALK S ++E+NED K+RR P P ++ K L+ LY+
Sbjct: 151 ALKYSV--VLELNEDHRKVRRTTPVPLFPNENLPS-KMLLVYDLYL 193
>UNIPROTKB|F1SIT3 [details] [associations]
symbol:LARP6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 GO:GO:0005634 GO:GO:0005794 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR024642
Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 CTD:55323 OMA:TSGGENE GeneTree:ENSGT00510000048191
EMBL:CU074280 EMBL:CU302364 RefSeq:XP_003121812.3
Ensembl:ENSSSCT00000005486 GeneID:100522415 KEGG:ssc:100522415
Uniprot:F1SIT3
Length = 492
Score = 141 (54.7 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 34/106 (32%), Positives = 61/106 (57%)
Query: 21 KLENQIIEQIEYYFSDINLARDKFLQGEIKKDD-GWVELTTMLKFARLAKMTTEAKVIVD 79
+L ++++QIE+YFSD NL +D FL ++++ G+V + + F ++ +T + +
Sbjct: 91 ELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTAH 150
Query: 80 ALKKSTSKLIEVNEDGTKIRRN-PEKELPTFDIDFVKDLIAQSLYV 124
ALK S + +E+NED K+RR P P ++ K L+ LY+
Sbjct: 151 ALKYSVT--LELNEDHRKVRRTTPVPLFPNENLPS-KMLLVYDLYL 193
>UNIPROTKB|F1NWE6 [details] [associations]
symbol:LARP6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005794 "Golgi apparatus"
evidence=IEA] InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302
GO:GO:0005634 GO:GO:0005794 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 OMA:TSGGENE
GeneTree:ENSGT00510000048191 EMBL:AADN02040372 EMBL:AADN02040373
EMBL:AADN02040374 EMBL:AADN02040375 EMBL:AADN02040376
EMBL:AADN02040377 EMBL:AADN02040378 EMBL:AADN02040379
IPI:IPI00582301 Ensembl:ENSGALT00000006440 Uniprot:F1NWE6
Length = 444
Score = 143 (55.4 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 35/108 (32%), Positives = 60/108 (55%)
Query: 22 LENQIIEQIEYYFSDINLARDKFLQGEIKKDD-GWVELTTMLKFARLAKMTTEAKVIVDA 80
L +++ QIEYYFSD NL +D FL ++++ G+V + + F ++ +T + + A
Sbjct: 47 LIQKLVAQIEYYFSDENLEKDAFLLKHVRRNKMGYVSVKLLTSFKKVKHLTRDWRTTTHA 106
Query: 81 LKKSTSKLIEVNEDGTKIRRN------PEKELPT-----FDIDFVKDL 117
LK S ++E+N+D K+RR P + LPT +DI + +L
Sbjct: 107 LKYSD--MLELNDDNRKVRRKTPVPVFPSENLPTRMLLVYDIHMISEL 152
Score = 38 (18.4 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 10/43 (23%), Positives = 24/43 (55%)
Query: 290 EDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVL 332
ED + L+K+++ ++ + ++F E +A + E+N + L
Sbjct: 261 EDSSKSLKKIRSLNKRVEELQFTGDESSANSSSEPESNPTSPL 303
>UNIPROTKB|Q6PKG0 [details] [associations]
symbol:LARP1 "La-related protein 1" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0016239
"positive regulation of macroautophagy" evidence=IMP]
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0016239
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 InterPro:IPR006607 SMART:SM00684 EMBL:BC001460
EMBL:BC033856 EMBL:AK091465 EMBL:AB018274 EMBL:AL133034
IPI:IPI00185919 IPI:IPI00411690 PIR:T42646 RefSeq:NP_056130.2
UniGene:Hs.292078 ProteinModelPortal:Q6PKG0 SMR:Q6PKG0
IntAct:Q6PKG0 MINT:MINT-1631511 STRING:Q6PKG0 PhosphoSite:Q6PKG0
DMDM:73621135 PaxDb:Q6PKG0 PRIDE:Q6PKG0 DNASU:23367
Ensembl:ENST00000336314 Ensembl:ENST00000518297 GeneID:23367
KEGG:hsa:23367 UCSC:uc003lvo.3 UCSC:uc010jie.1 CTD:23367
GeneCards:GC05P154092 HGNC:HGNC:29531 HPA:CAB015222 MIM:612059
neXtProt:NX_Q6PKG0 PharmGKB:PA142671564 HOGENOM:HOG000113283
HOVERGEN:HBG054322 InParanoid:Q6PKG0 OMA:GSEPATY ChiTaRS:LARP1
GenomeRNAi:23367 NextBio:45430 PMAP-CutDB:Q6PKG0 Bgee:Q6PKG0
CleanEx:HS_LARP1 Genevestigator:Q6PKG0 GermOnline:ENSG00000155506
Uniprot:Q6PKG0
Length = 1096
Score = 146 (56.5 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 39/109 (35%), Positives = 65/109 (59%)
Query: 22 LENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDAL 81
L++ I QIEYYFS NL RD FL+ ++ D G++ +T + F R+ +TT+ +I AL
Sbjct: 403 LKDYIKRQIEYYFSVDNLERDFFLRRKMDAD-GFLPITLIASFHRVQALTTDISLIFAAL 461
Query: 82 KKSTSKLIEVNEDGTKIRRNPEK-ELPTFDIDFVKDLIAQSLYV-KYIP 128
K S K++E+ ++ + R PEK LP +D+ + +Q L +++P
Sbjct: 462 KDS--KVVEIVDEKVRRREEPEKWPLPPI-VDYSQTDFSQLLNCPEFVP 507
Score = 43 (20.2 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 19/87 (21%), Positives = 36/87 (41%)
Query: 208 FLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQ 267
FL +K KNL + + L K+++ + + + K+ + G G EG K+
Sbjct: 996 FLKYSKAKNLDIDPKLQE-YLGKFRR-LEDFRVDPPMGEEGNHKRHSVVAGGGGGEGRKR 1053
Query: 268 VVLELPTGALLKISDIKEPVSREDIRE 294
+ + IS P + + +RE
Sbjct: 1054 CPSQSSSRPAAMISQPPTPPTGQPVRE 1080
Score = 42 (19.8 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 19/82 (23%), Positives = 36/82 (43%)
Query: 180 ENAEKFLNENKD--KNLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEY-- 235
++ KF + + + K F ++ HK + LNE K L ++ E + L ++ +
Sbjct: 867 QSLPKFQHPSHELLKENGFTQHVYHKYRRRCLNERK--RLGIGQSQEMNTLFRFWSFFLR 924
Query: 236 -HEEKKQEVRSKRDKSKKSTEG 256
H KK K+ + + EG
Sbjct: 925 DHFNKKMYEEFKQLALEDAKEG 946
>UNIPROTKB|G3V0E9 [details] [associations]
symbol:LARP1B "La-related protein 1B" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 EMBL:CH471056
GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 EMBL:AC096898 EMBL:AC099340 EMBL:AC108045
EMBL:AC114735 EMBL:AC124030 RefSeq:NP_115615.2 UniGene:Hs.657067
GeneID:55132 KEGG:hsa:55132 CTD:55132 HGNC:HGNC:24704
ChiTaRS:LARP1B GenomeRNAi:55132 NextBio:58806
ProteinModelPortal:G3V0E9 SMR:G3V0E9 PRIDE:G3V0E9
Ensembl:ENST00000432347 ArrayExpress:G3V0E9 Bgee:G3V0E9
Uniprot:G3V0E9
Length = 358
Score = 136 (52.9 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 32/87 (36%), Positives = 54/87 (62%)
Query: 18 EVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVI 77
E + L+ I QIEYYFS NL RD FL+G++ + G++ ++ + F R+ +TT +I
Sbjct: 211 EEALLKEYIKRQIEYYFSVENLERDFFLRGKMD-EQGFLPISLIAGFQRVQALTTNLNLI 269
Query: 78 VDALKKSTSKLIEVNEDGTKIRRNPEK 104
++ALK ST +E+ ++ + + PEK
Sbjct: 270 LEALKDSTE--VEIVDEKMRKKIEPEK 294
>ZFIN|ZDB-GENE-030131-6403 [details] [associations]
symbol:larp6 "La ribonucleoprotein domain family,
member 6" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0001756 "somitogenesis" evidence=IMP]
InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302
ZFIN:ZDB-GENE-030131-6403 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0001756 GO:GO:0030529
InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 CTD:55323 HOGENOM:HOG000010108
HOVERGEN:HBG070244 OMA:TSGGENE EMBL:BC056595 IPI:IPI00487082
RefSeq:NP_956197.1 UniGene:Dr.6975 ProteinModelPortal:Q6PHD4
GeneID:334471 KEGG:dre:334471 InParanoid:Q6PHD4 NextBio:20810417
ArrayExpress:Q6PHD4 Uniprot:Q6PHD4
Length = 485
Score = 138 (53.6 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 36/113 (31%), Positives = 60/113 (53%)
Query: 5 DSSATNGNSGAEAEVS-------KLENQIIEQIEYYFSDINLARDKFLQGEIKKDD-GWV 56
D S+ G SG E E +L +++ QIEYY SD NL D FL ++++ G+V
Sbjct: 54 DKSSGAGTSGGELEEESWQPPDPELIQKLVAQIEYYLSDENLEHDAFLLKHVRRNKLGFV 113
Query: 57 ELTTMLKFARLAKMTTEAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTF 109
+ + F ++ +T + + AL+ S L+E+N++G K+RR +P F
Sbjct: 114 SVKLLTSFKKVKHLTRDWRTTAYALRHSN--LLELNDEGRKVRRR--STVPVF 162
>UNIPROTKB|F1PKV9 [details] [associations]
symbol:LARP6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 GO:GO:0005634 GO:GO:0005794 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR024642
Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 OMA:TSGGENE GeneTree:ENSGT00510000048191
EMBL:AAEX03016265 Ensembl:ENSCAFT00000027928 Uniprot:F1PKV9
Length = 428
Score = 137 (53.3 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 36/116 (31%), Positives = 61/116 (52%)
Query: 4 TDSSATNGNSGAEAEVS----KLENQIIEQIEYYFSDINLARDKFLQGEIKKDD-GWVEL 58
T S N E E +L ++++QIE+YFSD NL +D FL ++++ G+V +
Sbjct: 6 TTSGGENERDDGEQEWKPPDQELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSV 65
Query: 59 TTMLKFARLAKMTTEAKVIVDALKKSTSKLIEVNEDGTKIRRN------PEKELPT 108
+ F ++ +T + + ALK S + +E+NED K+RR P + LP+
Sbjct: 66 KLLTSFKKVKHLTRDWRTTAHALKYSVT--LELNEDHRKVRRTTPVPLFPNENLPS 119
>MGI|MGI:1914807 [details] [associations]
symbol:Larp6 "La ribonucleoprotein domain family, member 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 PROSITE:PS50102 MGI:MGI:1914807 GO:GO:0005634
GO:GO:0005794 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HSSP:P05455 CTD:55323
eggNOG:NOG239004 HOGENOM:HOG000010108 HOVERGEN:HBG070244
OMA:TSGGENE OrthoDB:EOG4NGGMP EMBL:AK017372 EMBL:AK020966
EMBL:AK039614 EMBL:AK042616 EMBL:AK087521 EMBL:BC090615
IPI:IPI00309063 RefSeq:NP_080511.2 UniGene:Mm.44546
ProteinModelPortal:Q8BN59 SMR:Q8BN59 STRING:Q8BN59
PhosphoSite:Q8BN59 PaxDb:Q8BN59 PRIDE:Q8BN59
Ensembl:ENSMUST00000038407 GeneID:67557 KEGG:mmu:67557
UCSC:uc009pzh.1 GeneTree:ENSGT00510000048191 InParanoid:Q8BN59
NextBio:324917 Bgee:Q8BN59 CleanEx:MM_LARP6 Genevestigator:Q8BN59
Uniprot:Q8BN59
Length = 492
Score = 137 (53.3 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 36/116 (31%), Positives = 61/116 (52%)
Query: 4 TDSSATNGNSGAEAEV----SKLENQIIEQIEYYFSDINLARDKFLQGEIKKDD-GWVEL 58
T S N E E +L ++++QIE+YFSD NL +D FL ++++ G+V +
Sbjct: 70 TTSGGENDREDLEPEWRPPDEELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSV 129
Query: 59 TTMLKFARLAKMTTEAKVIVDALKKSTSKLIEVNEDGTKIRRN------PEKELPT 108
+ F ++ +T + + ALK S + +E+NED K+RR P + LP+
Sbjct: 130 KLLTSFKKVKHLTRDWRTTAHALKYSVT--LELNEDHRKVRRTTPVPLFPNENLPS 183
>RGD|1308414 [details] [associations]
symbol:Larp6 "La ribonucleoprotein domain family, member 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005794 "Golgi apparatus"
evidence=IEA;ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR002344
InterPro:IPR012677 PRINTS:PR00302 RGD:1308414 GO:GO:0005634
GO:GO:0005794 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
EMBL:CH473975 InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 CTD:55323 OMA:TSGGENE
OrthoDB:EOG4NGGMP GeneTree:ENSGT00510000048191 IPI:IPI00370054
RefSeq:NP_001101624.1 UniGene:Rn.33750 Ensembl:ENSRNOT00000017147
GeneID:315731 KEGG:rno:315731 UCSC:RGD:1308414 NextBio:669749
Uniprot:D3ZCR5
Length = 492
Score = 137 (53.3 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 36/116 (31%), Positives = 61/116 (52%)
Query: 4 TDSSATNGNSGAEAEVS----KLENQIIEQIEYYFSDINLARDKFLQGEIKKDD-GWVEL 58
T S N E E +L ++++QIE+YFSD NL +D FL ++++ G+V +
Sbjct: 70 TTSGGENDREDLEPEWKPPDEELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSV 129
Query: 59 TTMLKFARLAKMTTEAKVIVDALKKSTSKLIEVNEDGTKIRRN------PEKELPT 108
+ F ++ +T + + ALK S + +E+NED K+RR P + LP+
Sbjct: 130 KLLTSFKKVKHLTRDWRTTAHALKYSVT--LELNEDHRKVRRTTPVPLFPNENLPS 183
>UNIPROTKB|F1MZU1 [details] [associations]
symbol:LARP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016239 "positive regulation of macroautophagy"
evidence=IEA] Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016239
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
InterPro:IPR006607 SMART:SM00684 OMA:GSEPATY
GeneTree:ENSGT00390000000523 EMBL:DAAA02020719 IPI:IPI00714415
PRIDE:F1MZU1 Ensembl:ENSBTAT00000011109 Uniprot:F1MZU1
Length = 951
Score = 144 (55.7 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 41/110 (37%), Positives = 65/110 (59%)
Query: 22 LENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDAL 81
L++ I QIEYYFS NL RD FL+ ++ D G++ +T + F R+ +TT+ +I AL
Sbjct: 258 LKDYIKRQIEYYFSVDNLERDFFLRRKMDAD-GFLPMTLIASFHRVQALTTDISLIFAAL 316
Query: 82 KKSTSKLIEVNEDGTKIRRNPEK-ELPTFDI-DFVKDLIAQSLYV-KYIP 128
K S K++E+ E+ + R PEK LP I D+ + +Q L +++P
Sbjct: 317 KDS--KVVEIVEEKVRRREEPEKWPLPGPPIVDYSQTDFSQLLNCPEFVP 364
Score = 42 (19.8 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 19/82 (23%), Positives = 36/82 (43%)
Query: 180 ENAEKFLNENKD--KNLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEY-- 235
++ KF + + + K F ++ HK + LNE K L ++ E + L ++ +
Sbjct: 724 QSLPKFQHPSHELLKENGFTQHVYHKYRRRCLNERK--RLGIGQSQEMNTLFRFWSFFLR 781
Query: 236 -HEEKKQEVRSKRDKSKKSTEG 256
H KK K+ + + EG
Sbjct: 782 DHFNKKMYEEFKQLALEDAKEG 803
>UNIPROTKB|G3XAJ5 [details] [associations]
symbol:LARP1B "La-related protein 1B" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 EMBL:CH471056
GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 EMBL:AC096898 EMBL:AC099340 EMBL:AC108045
EMBL:AC114735 EMBL:AC124030 RefSeq:NP_835144.1 UniGene:Hs.657067
GeneID:55132 KEGG:hsa:55132 CTD:55132 HGNC:HGNC:24704
ChiTaRS:LARP1B GenomeRNAi:55132 NextBio:58806
ProteinModelPortal:G3XAJ5 SMR:G3XAJ5 PRIDE:G3XAJ5
Ensembl:ENST00000427266 ArrayExpress:G3XAJ5 Bgee:G3XAJ5
Uniprot:G3XAJ5
Length = 522
Score = 136 (52.9 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 32/87 (36%), Positives = 54/87 (62%)
Query: 18 EVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVI 77
E + L+ I QIEYYFS NL RD FL+G++ + G++ ++ + F R+ +TT +I
Sbjct: 211 EEALLKEYIKRQIEYYFSVENLERDFFLRGKMD-EQGFLPISLIAGFQRVQALTTNLNLI 269
Query: 78 VDALKKSTSKLIEVNEDGTKIRRNPEK 104
++ALK ST +E+ ++ + + PEK
Sbjct: 270 LEALKDSTE--VEIVDEKMRKKIEPEK 294
>MGI|MGI:1890165 [details] [associations]
symbol:Larp1 "La ribonucleoprotein domain family, member 1"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISA] [GO:0016239 "positive regulation of
macroautophagy" evidence=ISO] MGI:MGI:1890165 GO:GO:0005737
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0016239
EMBL:AL672182 InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193
Pfam:PF05383 SMART:SM00715 OrthoDB:EOG4PZJ64 InterPro:IPR006607
SMART:SM00684 HOGENOM:HOG000113283 HOVERGEN:HBG054322 OMA:GSEPATY
EMBL:BC053449 EMBL:AK129202 IPI:IPI00929761 IPI:IPI00929786
UniGene:Mm.248843 ProteinModelPortal:Q6ZQ58 SMR:Q6ZQ58
STRING:Q6ZQ58 PhosphoSite:Q6ZQ58 PaxDb:Q6ZQ58 PRIDE:Q6ZQ58
Ensembl:ENSMUST00000071487 UCSC:uc007jah.2
GeneTree:ENSGT00390000000523 InParanoid:Q6ZQ58 Bgee:Q6ZQ58
CleanEx:MM_LARP1 Genevestigator:Q6ZQ58
GermOnline:ENSMUSG00000037331 Uniprot:Q6ZQ58
Length = 1072
Score = 143 (55.4 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 44/127 (34%), Positives = 73/127 (57%)
Query: 5 DSSATNGNSGAEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKF 64
D+ ++N + E+ L++ I QIEYYFS NL RD FL+ ++ D G++ +T + F
Sbjct: 363 DNVSSNEIYSMDQEL--LKDYIKRQIEYYFSVDNLERDFFLRRKMDAD-GFLPITLIASF 419
Query: 65 ARLAKMTTEAKVIVDALKKSTSKLIEVNEDGTKIRRNPEK-ELPTFDI-DFVKDLIAQSL 122
R+ +TT+ +I ALK S K++E+ E+ + R PEK LP I D+ + +Q L
Sbjct: 420 HRVQALTTDISLIFAALKDS--KVVEMVEEKVRRREEPEKWPLPGPPIVDYSQTDFSQLL 477
Query: 123 YV-KYIP 128
+++P
Sbjct: 478 NCPEFVP 484
Score = 42 (19.8 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 19/82 (23%), Positives = 36/82 (43%)
Query: 180 ENAEKFLNENKD--KNLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEY-- 235
++ KF + + + K F ++ HK + LNE K L ++ E + L ++ +
Sbjct: 844 QSLPKFQHPSHELLKENGFTQHVYHKYRRRCLNERK--RLGIGQSQEMNTLFRFWSFFLR 901
Query: 236 -HEEKKQEVRSKRDKSKKSTEG 256
H KK K+ + + EG
Sbjct: 902 DHFNKKMYEEFKQLALEDAKEG 923
>RGD|1306683 [details] [associations]
symbol:Larp1 "La ribonucleoprotein domain family, member 1"
species:10116 "Rattus norvegicus" [GO:0016239 "positive regulation
of macroautophagy" evidence=ISO] RGD:1306683 Gene3D:1.10.10.10
InterPro:IPR011991 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 InterPro:IPR006607 SMART:SM00684
GeneTree:ENSGT00390000000523 IPI:IPI00369227 PRIDE:F1M062
Ensembl:ENSRNOT00000036959 Uniprot:F1M062
Length = 1024
Score = 142 (55.0 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
Identities = 41/110 (37%), Positives = 65/110 (59%)
Query: 22 LENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDAL 81
L++ I QIEYYFS NL RD FL+ ++ D G++ +T + F R+ +TT+ +I AL
Sbjct: 330 LKDYIKRQIEYYFSVDNLERDFFLRRKMDAD-GFLPITLIASFHRVQALTTDISLIFAAL 388
Query: 82 KKSTSKLIEVNEDGTKIRRNPEK-ELPTFDI-DFVKDLIAQSLYV-KYIP 128
K S K++E+ E+ + R PEK LP I D+ + +Q L +++P
Sbjct: 389 KDS--KVVEMVEEKVRRREEPEKWPLPGPPIVDYSQTDFSQLLNCPEFVP 436
Score = 42 (19.8 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
Identities = 19/82 (23%), Positives = 36/82 (43%)
Query: 180 ENAEKFLNENKD--KNLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEY-- 235
++ KF + + + K F ++ HK + LNE K L ++ E + L ++ +
Sbjct: 796 QSLPKFQHPSHELLKENGFTQHVYHKYRRRCLNERK--RLGIGQSQEMNTLFRFWSFFLR 853
Query: 236 -HEEKKQEVRSKRDKSKKSTEG 256
H KK K+ + + EG
Sbjct: 854 DHFNKKMYEEFKQLALEDAKEG 875
>UNIPROTKB|Q659C4 [details] [associations]
symbol:LARP1B "La-related protein 1B" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 InterPro:IPR006630 PROSITE:PS50961
eggNOG:COG5193 Pfam:PF05383 SMART:SM00715 EMBL:AK001240
EMBL:AK027164 EMBL:AK092764 EMBL:AK098437 EMBL:AL137759
EMBL:AL832170 EMBL:BX537937 EMBL:AC096898 EMBL:AC099340
EMBL:AC108045 EMBL:AC114735 EMBL:AC124030 EMBL:BC030516
EMBL:BC050654 EMBL:BC062606 EMBL:BC110300 IPI:IPI00383949
IPI:IPI00855721 IPI:IPI00855786 IPI:IPI00855812 IPI:IPI00855930
IPI:IPI00855953 IPI:IPI00856120 IPI:IPI00940348 IPI:IPI00943149
RefSeq:NP_060548.2 RefSeq:NP_115615.2 RefSeq:NP_835144.1
UniGene:Hs.657067 HSSP:Q71RC2 ProteinModelPortal:Q659C4 SMR:Q659C4
DIP:DIP-47319N IntAct:Q659C4 PhosphoSite:Q659C4 DMDM:158564329
PaxDb:Q659C4 PRIDE:Q659C4 DNASU:55132 Ensembl:ENST00000264584
Ensembl:ENST00000326639 Ensembl:ENST00000354456
Ensembl:ENST00000394288 Ensembl:ENST00000441387 GeneID:55132
KEGG:hsa:55132 UCSC:uc003ifw.1 UCSC:uc003iga.3 UCSC:uc003igc.3
UCSC:uc003igf.3 CTD:55132 GeneCards:GC04P128983 HGNC:HGNC:24704
HPA:HPA036280 neXtProt:NX_Q659C4 PharmGKB:PA165664174
InParanoid:Q659C4 OMA:PPYVKKH OrthoDB:EOG4PZJ64 PhylomeDB:Q659C4
ChiTaRS:LARP1B GenomeRNAi:55132 NextBio:58806 ArrayExpress:Q659C4
Bgee:Q659C4 CleanEx:HS_LARP2 Genevestigator:Q659C4
InterPro:IPR006607 SMART:SM00684 Uniprot:Q659C4
Length = 914
Score = 136 (52.9 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 32/87 (36%), Positives = 54/87 (62%)
Query: 18 EVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVI 77
E + L+ I QIEYYFS NL RD FL+G++ + G++ ++ + F R+ +TT +I
Sbjct: 211 EEALLKEYIKRQIEYYFSVENLERDFFLRGKMD-EQGFLPISLIAGFQRVQALTTNLNLI 269
Query: 78 VDALKKSTSKLIEVNEDGTKIRRNPEK 104
++ALK ST +E+ ++ + + PEK
Sbjct: 270 LEALKDSTE--VEIVDEKMRKKIEPEK 294
>DICTYBASE|DDB_G0274493 [details] [associations]
symbol:lig1 "DNA ligase I" species:44689
"Dictyostelium discoideum" [GO:0051103 "DNA ligation involved in
DNA repair" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA;IBA] [GO:0003909 "DNA ligase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] [GO:0006273 "lagging
strand elongation" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0005634 "nucleus" evidence=IEA;IBA]
[GO:0051301 "cell division" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 dictyBase:DDB_G0274493
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0051301 GO:GO:0046872 GO:GO:0003677 GenomeReviews:CM000151_GR
EMBL:AAFI02000012 GO:GO:0007049 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273
eggNOG:COG1793 KO:K10747 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
RefSeq:XP_644124.1 HSSP:P18858 ProteinModelPortal:Q869E1
STRING:Q869E1 EnsemblProtists:DDB0232265 GeneID:8619554
KEGG:ddi:DDB_G0274493 OMA:SERYSIM Uniprot:Q869E1
Length = 1192
Score = 137 (53.3 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 80/322 (24%), Positives = 135/322 (41%)
Query: 16 EAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAK 75
E E E + E+ EY D + D + E++ D+ E K + K E+K
Sbjct: 75 EQEEQDGEEEQEEEEEYQQQDEEIEEDINGEEEMELDENEKEKNKKKKQSLKTKENKESK 134
Query: 76 VIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDATLDD 135
+ K +K + E + + N K L +D ++ +D LDD
Sbjct: 135 SSSSSKKTIENKETKKPEKQSSKQSNNLKRLKRKKMDDDEEDEEDENKTDDNDLDDMLDD 194
Query: 136 IKDFFKKN-TSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNL 194
D K + +S+D + ++++ ++K +KK K KE EK E ++K+
Sbjct: 195 DSDNEKDSISSKDKEYKEKVLKD-KEKKEKEKKEKELKEKESKEKEKKEKEKKEKEEKDK 253
Query: 195 KFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKST 254
K E E + EK L + K+K LK E E K ++E E++K+E K + K+
Sbjct: 254 KEKELKEKELKEKELKDKKEKELKEKEK-ELKDKEKKEKELKEKEKKEKEEKEKEKKEKK 312
Query: 255 EGDGEGNTEGSKQVVLELPTGALLKISDIKEPVSREDIREVLE-KVQTDDQEIVFIEFNV 313
E + + E K+ EL L K ++KE +E +E+ K +T D +F N
Sbjct: 313 EKELKEKEEKEKKEK-ELKEKEL-KEKELKEKELKE--KELTSPKKETIDISDLFKRANA 368
Query: 314 ----GEPTAFVRYKKENNAEAV 331
PT+ + K N + V
Sbjct: 369 EAKSSVPTSTSKNSKTNKKQKV 390
>TAIR|locus:2051734 [details] [associations]
symbol:LARP6b "AT2G43970" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302 GO:GO:0005634
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
EMBL:AC004005 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 KO:K15191 UniGene:At.20914 EMBL:AF332565
EMBL:AF375410 EMBL:AF367277 EMBL:AY056238 EMBL:AY129474
IPI:IPI00531024 PIR:T00677 RefSeq:NP_566004.1 UniGene:At.20070
UniGene:At.74750 UniGene:At.74872 UniGene:At.74992
ProteinModelPortal:O80567 SMR:O80567 IntAct:O80567 PRIDE:O80567
EnsemblPlants:AT2G43970.1 GeneID:819002 KEGG:ath:AT2G43970
TAIR:At2g43970 HOGENOM:HOG000244026 InParanoid:O80567 OMA:HEEDDAT
PhylomeDB:O80567 ProtClustDB:CLSN2688918 ArrayExpress:O80567
Genevestigator:O80567 Uniprot:O80567
Length = 545
Score = 125 (49.1 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 58/258 (22%), Positives = 112/258 (43%)
Query: 25 QIIEQIEYYFSDINLARDKFLQGEIKKD-DGWVELTTMLKFARLAKMTTEAKVIVDALKK 83
+I+ Q+EYYFSD+NLA L I KD +G+V + + F ++ + + L+
Sbjct: 196 KIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINNNSQLAAVLQN 255
Query: 84 STSKLIEVNEDGTKIRR-NPEKELPTFDIDFVKDLIAQSL-----YVKYIPVDATLDDIK 137
S +KL V+EDG K+RR +P E ++ + ++A++L Y + + +T+ +K
Sbjct: 256 S-AKLF-VSEDGKKVRRISPITESAIEELQS-RIIVAENLPEDHCYQNLMKIFSTVGSVK 312
Query: 138 DFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNE-----NKDK 192
+ + R+ K FV ++ E AE+ + E N
Sbjct: 313 NIRTCQPQNNGSGAPPAARSAAKSDGTLFSNKVHAFVEYEIVELAERAVTELSEAGNWRS 372
Query: 193 NLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSL--LIKWQQEYHEEKKQEVRSKRDKS 250
LK +H+ E + + + + + EH +Q+ E++ + + D
Sbjct: 373 GLKVRLMLKHQTKEPKQGQGRGRK-GHDADVEHEEDDATTSEQQPIEKQSDDCSGEWDTH 431
Query: 251 KKSTE-GDGEGNTEGSKQ 267
+ G+ +GN + + Q
Sbjct: 432 MQEQPIGEDQGNEKAAGQ 449
Score = 50 (22.7 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 377 NEKKSGRKFGKKGPRGTKRSRG 398
NEK +G++ G+ RG R RG
Sbjct: 443 NEKAAGQRKGRNRGRGKGRGRG 464
>DICTYBASE|DDB_G0271058 [details] [associations]
symbol:vilC "villin-like protein C" species:44689
"Dictyostelium discoideum" [GO:0007010 "cytoskeleton organization"
evidence=IEA] [GO:0003779 "actin binding" evidence=IEA]
InterPro:IPR003128 InterPro:IPR007122 PRINTS:PR00597
PROSITE:PS51089 SMART:SM00262 dictyBase:DDB_G0271058 GO:GO:0007010
EMBL:AAFI02000005 GenomeReviews:CM000150_GR SUPFAM:SSF47050
InterPro:IPR007123 PANTHER:PTHR11977 Pfam:PF00626 eggNOG:NOG324767
RefSeq:XP_001134479.1 ProteinModelPortal:Q1ZXP5
EnsemblProtists:DDB0232136 GeneID:8617650 KEGG:ddi:DDB_G0271058
InParanoid:Q1ZXP5 OMA:DSRTEND Uniprot:Q1ZXP5
Length = 1528
Score = 133 (51.9 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 95/419 (22%), Positives = 172/419 (41%)
Query: 4 TDSSATNGNSGAEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKK---DDGWV-ELT 59
T S + + NSG ++ S L Q I E R K L+ E KK + + E
Sbjct: 110 TSSYSISENSGGDSSTSLLSAQAISAKEE-----REKRRKELEEEAKKLELEQQKIREER 164
Query: 60 TMLKFARLAKMTTEAKVIVDALKKSTSKLIEV--NEDGTKIRRNPEKELPTFDIDFVKDL 117
K R + E + + D L K S+ IE E+ K+ + EKE ++ K+
Sbjct: 165 EKRKEERRLQQEEEQRKLQDLLDKKDSEKIEKLKQEENEKLEKE-EKERIEKELTDKKEK 223
Query: 118 IAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFD 177
+ L K + + ++ D +K E + + + +++L +KK K +
Sbjct: 224 EEKELADK-LEKERQEKELADKLEKEKKEKEE-KELADKLEKERLDKEKKDK-------E 274
Query: 178 NKENAEKFLNENKDKNLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHE 237
KE A+K E+++K L E + A+K E K+K K E E L K +E E
Sbjct: 275 EKELADKLEKESQEKELAEKLEKEKELADKLEKEQKEKEEK--ERQEKELADKLAKEQKE 332
Query: 238 EKKQEVRSKRDKSKKSTE-GDGEGNTEGSKQVV--LELPTGALLKISDIKEPVSREDIRE 294
++++E+ K +K ++ E D + K++ LE + +++ +++ +
Sbjct: 333 KEEKELADKLEKERQEKELADKLEKEKQEKELADKLEKEKQEKESLEKLEKEKQEKELAD 392
Query: 295 VLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVTG 354
L K Q + +E E E + +KE + + A + E K K +E
Sbjct: 393 KLAKEQKEKEEKEEKE----EKEKQEKEEKERKDKELAAAAAAAETE-KLEKERLEKEKK 447
Query: 355 E-EEQTVLDRMKIDIFKRR--QKLMNEKKSGRKFGKKGPRGTKRSRGGNFESNKKAKVE 410
E EE+ + ++++ + ++ KL EKK K + E +K K E
Sbjct: 448 ELEEKELAEKLEKEKLEKELTDKLEKEKKEKELADKLEKEKQDKELADKLEKEQKEKEE 506
>DICTYBASE|DDB_G0295683 [details] [associations]
symbol:DDB_G0295683 "cofilin/tropomyosin type actin
binding domain-containing protein" species:44689 "Dictyostelium
discoideum" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003779 "actin
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0046872 "metal ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 InterPro:IPR002108 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS51263 SMART:SM00132
dictyBase:DDB_G0295683 GO:GO:0046872 GO:GO:0008270 GO:GO:0005622
Gene3D:2.10.110.10 InterPro:IPR013326 SUPFAM:SSF47162
EMBL:AAFI02000193 RefSeq:XP_001733061.1 ProteinModelPortal:B0G198
EnsemblProtists:DDB0238576 GeneID:8628738 KEGG:ddi:DDB_G0295683
OMA:SVQTNSQ Uniprot:B0G198
Length = 1589
Score = 133 (51.9 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 67/271 (24%), Positives = 122/271 (45%)
Query: 135 DIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNL 194
++ + KK E + I + ++K +K+ + + + + + EK + K + L
Sbjct: 624 ELLELNKKIEQEQRDLEERIQKEQKEKDQREKQDQLAQ-MELEREREREKEEKKRKQQQL 682
Query: 195 KFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQ-EVRSKRDKSKKS 253
E E + EK KD+ L+ + E +K QQ+ E+K+Q E R +R+K +K
Sbjct: 683 AQLEKEERERNEKL---EKDRQLQLEQEIEKERKLKQQQKEKEQKEQKEKREQREKEEKE 739
Query: 254 TEGDGEGNTEGSKQVVLELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNV 313
E D + E KQ + + + K+ ++ RE EK + +++E E
Sbjct: 740 -EKDKKDKEEKEKQELKKKQQQQQQQKEKEKQERKEKEEREEREKEEREEREER--EEKE 796
Query: 314 GEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVTGEEEQTVLDRMKIDIFK-RR 372
E + K++ E LK KE ++ K E + E+E+ +++I K R+
Sbjct: 797 RELKLKQQKKQKEEKEKELKLKQQKEQEEREEKE--EKLREEKEKQ--RKLEIQQEKERQ 852
Query: 373 QKLMNEKKSGRKFGKKGPRGTKRSRGGNFES 403
QK EK K K+ + TK++RGG+ S
Sbjct: 853 QKEKAEKLEKEKLEKE--KETKKTRGGSLPS 881
>TAIR|locus:2089508 [details] [associations]
symbol:LARP6c "La related protein 6c" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR009818
Pfam:PF07145 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 KO:K15191 HOGENOM:HOG000244026 EMBL:AP002041
IPI:IPI00538604 RefSeq:NP_188540.1 UniGene:At.53384
ProteinModelPortal:Q9LHL3 SMR:Q9LHL3 PRIDE:Q9LHL3
EnsemblPlants:AT3G19090.1 GeneID:821444 KEGG:ath:AT3G19090
TAIR:At3g19090 eggNOG:NOG304440 InParanoid:Q9LHL3 OMA:FVPRSHT
PhylomeDB:Q9LHL3 ProtClustDB:CLSN2684555 Genevestigator:Q9LHL3
Uniprot:Q9LHL3
Length = 455
Score = 126 (49.4 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 59/265 (22%), Positives = 126/265 (47%)
Query: 7 SATNGNSGAEAEVSK-LENQIIEQIEYYFSDINLARDKFLQGEIKKD-DGWVELTTMLKF 64
++ N +S ++ +S L +I++Q+EY F+D++L ++ + I KD +G+V ++ +
Sbjct: 128 ASQNSSSSSKNLLSDDLRLKIVKQVEYQFTDMSLLANESISKHISKDPEGYVPVSYIAST 187
Query: 65 ARLAKMTTEAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYV 124
++ +T+ ++ AL+ S+SKL+ V+EDG K++R + D D ++L +++
Sbjct: 188 KKIKALTSNHHLVSLALR-SSSKLV-VSEDGKKVKRTSQFT----DRDR-EELQGRTVVA 240
Query: 125 KYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKF----KGSIFVTFDNKE 180
+ +P D + +++ F +VK I + + F K + +DN
Sbjct: 241 ENLPDDHSYQNLEKIF--GVVGNVKAIRICHPPESNSSRPKGDFLMSNKIHALIEYDNTV 298
Query: 181 NAEKFLNE-NKDKNLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEK 239
A+K + + N ++N + + L + LK N + +LI + +E
Sbjct: 299 IADKAVEKLNDERNWR-----KGLRVRLLLRCSPKSVLKNRRNFD-GILIDDELPSYESG 352
Query: 240 KQEVRSKRDKSKKSTEGDGEGNTEG 264
+ R +S+ +GD + N G
Sbjct: 353 EDSPRLHLTESQLDNDGD-DNNVGG 376
>UNIPROTKB|Q14789 [details] [associations]
symbol:GOLGB1 "Golgin subfamily B member 1" species:9606
"Homo sapiens" [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0000139 "Golgi membrane" evidence=IEA] [GO:0005793 "endoplasmic
reticulum-Golgi intermediate compartment" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007030 "Golgi organization" evidence=TAS]
[GO:0005795 "Golgi stack" evidence=TAS] InterPro:IPR026202
GO:GO:0016021 GO:GO:0000139 EMBL:CH471052 GO:GO:0005795
eggNOG:NOG12793 GO:GO:0005793 GO:GO:0007030 EMBL:X75304 EMBL:D25542
EMBL:AB371588 EMBL:AC119736 EMBL:AC133750 IPI:IPI00004671
IPI:IPI00796891 PIR:A56539 PIR:I52300 RefSeq:NP_001243416.1
RefSeq:NP_001243417.1 RefSeq:NP_004478.3 UniGene:Hs.213389
UniGene:Hs.741209 ProteinModelPortal:Q14789 DIP:DIP-34649N
IntAct:Q14789 MINT:MINT-1182261 STRING:Q14789 PhosphoSite:Q14789
DMDM:145559478 PaxDb:Q14789 PRIDE:Q14789 Ensembl:ENST00000340645
Ensembl:ENST00000393667 GeneID:2804 KEGG:hsa:2804 UCSC:uc003eei.4
CTD:2804 GeneCards:GC03M121382 H-InvDB:HIX0017595 HGNC:HGNC:4429
HPA:HPA011008 HPA:HPA011555 MIM:602500 neXtProt:NX_Q14789
PharmGKB:PA28810 HOGENOM:HOG000112754 HOVERGEN:HBG051756
InParanoid:Q14789 OrthoDB:EOG43R3KV PhylomeDB:Q14789 ChiTaRS:GOLGB1
GenomeRNAi:2804 NextBio:11053 ArrayExpress:Q14789 Bgee:Q14789
CleanEx:HS_GOLGB1 Genevestigator:Q14789 GermOnline:ENSG00000173230
PANTHER:PTHR18887 Uniprot:Q14789
Length = 3259
Score = 134 (52.2 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 84/396 (21%), Positives = 169/396 (42%)
Query: 16 EAEVSKLENQIIEQIEYYFSDINLARD--KFLQGEIKKDDGWVELTTMLKFARLAKMTTE 73
E VSK N +E E + + N+ + + + GE ++ D + ++T ++
Sbjct: 1764 EGNVSKQAN--LEATEKHDNQTNVTEEGTQSIPGETEEQDS-LSMSTR---PTCSESVPS 1817
Query: 74 AKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDL-IAQSLYVKYIPVDAT 132
AK A+ K S E+N +I + E+ + + + K+ +Q+L + + +
Sbjct: 1818 AKSANPAVSKDFSSHDEINNYLQQIDQLKER-IAGLEEEKQKNKEFSQTLENEKNTLLSQ 1876
Query: 133 LDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDK 192
+ KD K E+V N++ + Q++L+ K K + D+ E E+ +N+ +
Sbjct: 1877 IST-KDGELKMLQEEVTKMNLLNQQIQEELSRVTKLKETAEEEKDDLE--ERLMNQLAEL 1933
Query: 193 NLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKK 252
N C+ + NE + +K + C L + QQ E+ K E +++ +K
Sbjct: 1934 NGSIGNYCQDVTDAQIKNELLESEMKNLKKCVSELEEEKQQLVKEKTKVESEIRKEYLEK 1993
Query: 253 STEGDGEGNTEGSKQVVLELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFN 312
G G+K EL K ++K+ + ++ IR EK+ ++ + +EF
Sbjct: 1994 I---QGAQKEPGNKSHAKELQELLKEKQQEVKQ-LQKDCIR-YQEKISALERTVKALEFV 2048
Query: 313 VGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVTGEEEQTVLDRMKIDIFKRR 372
E + KEN A+AV + + + KV ++ E + + D +K+ +
Sbjct: 2049 QTESQKDLEITKENLAQAV-EHRKKAQAELASFKVLLDDTQSEAARVLADNLKL-----K 2102
Query: 373 QKLMNEKKSGRKFGKKGPRGTKRSRGGNFESNKKAK 408
++L + K+S + K+ +R E + K K
Sbjct: 2103 KELQSNKESVKSQMKQKDEDLERRLEQAEEKHLKEK 2138
>GENEDB_PFALCIPARUM|PF11_0242 [details] [associations]
symbol:PF11_0242 "protein kinase" species:5833
"Plasmodium falciparum" [GO:0005575 "cellular_component"
evidence=ND] Pfam:PF00169 InterPro:IPR000719 InterPro:IPR001849
InterPro:IPR002048 InterPro:IPR002290 InterPro:IPR008271
InterPro:IPR011009 InterPro:IPR017441 Pfam:PF00069 PROSITE:PS00107
PROSITE:PS00108 PROSITE:PS50003 PROSITE:PS50011 PROSITE:PS50222
SMART:SM00220 SMART:SM00233 Prosite:PS00018 GO:GO:0005524
GO:GO:0005543 Gene3D:2.30.29.30 InterPro:IPR011993 SUPFAM:SSF56112
GO:GO:0004674 InterPro:IPR018247 HSSP:P49137 EMBL:AE014186
RefSeq:XP_001347913.1 ProteinModelPortal:Q8IID2 IntAct:Q8IID2
MINT:MINT-1618127 PRIDE:Q8IID2 EnsemblProtists:PF11_0242:mRNA
GeneID:810789 KEGG:pfa:PF11_0242 EuPathDB:PlasmoDB:PF3D7_1123100
HOGENOM:HOG000282345 Uniprot:Q8IID2
Length = 2265
Score = 132 (51.5 bits), Expect = 0.00011, P = 0.00011
Identities = 83/386 (21%), Positives = 172/386 (44%)
Query: 27 IEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDALK-KST 85
IE+ E + N ++DK KK ++ F ++ + T + IVD K K
Sbjct: 808 IEKEEEEYITNNFSKDKNDTSINKKKTKNENNAKLVSF--VSDIKTGEENIVDKDKIKEY 865
Query: 86 SKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLI-AQSLYVKYIPVDATLDDIKD---FFK 141
K +++D ++N + D + I + K + L+++K+ +K
Sbjct: 866 EKEYSIHKDKDD-KKNANSSFESEHEDLKRQFINMKEKKKKSLKEKDELNNMKEDNKIYK 924
Query: 142 KNTSEDVK-ITNIIMRNY-QDKLANQKKFKGSIFVTFDNK-ENAEKFLNENKDKNLKFNE 198
K D K I NI +N Q++ N+ + + +N+ EN + NEN+++N N+
Sbjct: 925 KLEEYDKKSINNIENQNENQNENQNENQNENQNENQNENQNENQNENQNENQNENQNENQ 984
Query: 199 NCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDG 258
N E++N + N+N+++N NEN +++ I ++ +E+ K +++ ++ KKS
Sbjct: 985 N-ENQNENQNENQNENQNENQNENQKNNNNILKEKNSYEDDKGKIKVINNEIKKSVHHLS 1043
Query: 259 EGNTEGS-KQVVLELPTGALLKISDIKEPVSRE-DIREVLEKVQTDDQEIVFIEFNV--G 314
+ ++ S + L+L + K ++ S D + +++ Q D++ V E N+
Sbjct: 1044 DNVSDLSYDEKWLKLSSNGTNKKKELNNDNSNNFDESQRIQEYQNDNKNNVIEENNILIN 1103
Query: 315 EPTAFVRYKKEN-NAEAVLKALGSKEIVIK---DVKVSIEVVTGEEEQTVLDRMKIDIFK 370
+ K+++ N + +K+ I+I D+ +V + V D ++
Sbjct: 1104 QKKNSHNMKEDSINIQVDMKSNIHMNIIINKVNDMNDVNDVNNANDVNNVNDVNNVNDMN 1163
Query: 371 RRQKLMNEKKSGRKFGKKGPRGTKRS 396
+ + NE+K F K + T R+
Sbjct: 1164 NVEGINNEQKEN-DFVKMNKQNTNRN 1188
>UNIPROTKB|Q8IID2 [details] [associations]
symbol:PF11_0242 "Calcium-dependent protein kinase,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005575
"cellular_component" evidence=ND] Pfam:PF00169 InterPro:IPR000719
InterPro:IPR001849 InterPro:IPR002048 InterPro:IPR002290
InterPro:IPR008271 InterPro:IPR011009 InterPro:IPR017441
Pfam:PF00069 PROSITE:PS00107 PROSITE:PS00108 PROSITE:PS50003
PROSITE:PS50011 PROSITE:PS50222 SMART:SM00220 SMART:SM00233
Prosite:PS00018 GO:GO:0005524 GO:GO:0005543 Gene3D:2.30.29.30
InterPro:IPR011993 SUPFAM:SSF56112 GO:GO:0004674 InterPro:IPR018247
HSSP:P49137 EMBL:AE014186 RefSeq:XP_001347913.1
ProteinModelPortal:Q8IID2 IntAct:Q8IID2 MINT:MINT-1618127
PRIDE:Q8IID2 EnsemblProtists:PF11_0242:mRNA GeneID:810789
KEGG:pfa:PF11_0242 EuPathDB:PlasmoDB:PF3D7_1123100
HOGENOM:HOG000282345 Uniprot:Q8IID2
Length = 2265
Score = 132 (51.5 bits), Expect = 0.00011, P = 0.00011
Identities = 83/386 (21%), Positives = 172/386 (44%)
Query: 27 IEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDALK-KST 85
IE+ E + N ++DK KK ++ F ++ + T + IVD K K
Sbjct: 808 IEKEEEEYITNNFSKDKNDTSINKKKTKNENNAKLVSF--VSDIKTGEENIVDKDKIKEY 865
Query: 86 SKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLI-AQSLYVKYIPVDATLDDIKD---FFK 141
K +++D ++N + D + I + K + L+++K+ +K
Sbjct: 866 EKEYSIHKDKDD-KKNANSSFESEHEDLKRQFINMKEKKKKSLKEKDELNNMKEDNKIYK 924
Query: 142 KNTSEDVK-ITNIIMRNY-QDKLANQKKFKGSIFVTFDNK-ENAEKFLNENKDKNLKFNE 198
K D K I NI +N Q++ N+ + + +N+ EN + NEN+++N N+
Sbjct: 925 KLEEYDKKSINNIENQNENQNENQNENQNENQNENQNENQNENQNENQNENQNENQNENQ 984
Query: 199 NCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEGDG 258
N E++N + N+N+++N NEN +++ I ++ +E+ K +++ ++ KKS
Sbjct: 985 N-ENQNENQNENQNENQNENQNENQKNNNNILKEKNSYEDDKGKIKVINNEIKKSVHHLS 1043
Query: 259 EGNTEGS-KQVVLELPTGALLKISDIKEPVSRE-DIREVLEKVQTDDQEIVFIEFNV--G 314
+ ++ S + L+L + K ++ S D + +++ Q D++ V E N+
Sbjct: 1044 DNVSDLSYDEKWLKLSSNGTNKKKELNNDNSNNFDESQRIQEYQNDNKNNVIEENNILIN 1103
Query: 315 EPTAFVRYKKEN-NAEAVLKALGSKEIVIK---DVKVSIEVVTGEEEQTVLDRMKIDIFK 370
+ K+++ N + +K+ I+I D+ +V + V D ++
Sbjct: 1104 QKKNSHNMKEDSINIQVDMKSNIHMNIIINKVNDMNDVNDVNNANDVNNVNDVNNVNDMN 1163
Query: 371 RRQKLMNEKKSGRKFGKKGPRGTKRS 396
+ + NE+K F K + T R+
Sbjct: 1164 NVEGINNEQKEN-DFVKMNKQNTNRN 1188
>DICTYBASE|DDB_G0280121 [details] [associations]
symbol:DDB_G0280121 "C2H2-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR003604
InterPro:IPR007087 InterPro:IPR015880 PROSITE:PS00028
PROSITE:PS50157 SMART:SM00355 SMART:SM00451 dictyBase:DDB_G0280121
GO:GO:0008270 GO:GO:0003676 GO:GO:0005622 EMBL:AAFI02000035
InterPro:IPR022755 Pfam:PF12171 eggNOG:NOG137207 KO:K12848
RefSeq:XP_641255.1 EnsemblProtists:DDB0216436 GeneID:8622387
KEGG:ddi:DDB_G0280121 InParanoid:Q54VV0 OMA:STHVERS Uniprot:Q54VV0
Length = 294
Score = 120 (47.3 bits), Expect = 0.00014, P = 0.00014
Identities = 52/181 (28%), Positives = 79/181 (43%)
Query: 80 ALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPV--DATLDDIK 137
+ K S S L VN + + T + VK+ + + K + D K
Sbjct: 105 SFKDSNSMLAHVNTKRHNRLKGVSMRVETSTLSQVKNKLKKGKEDKLLSKLNDGKKVTEK 164
Query: 138 DFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDN-KENAEKFLNENKDKNLKF 196
D K E KI I D+ NQ++ SI DN K+N K NEN+++N
Sbjct: 165 DLQLKRDQEYEKIIKNIKEKENDESTNQQE---SINNPNDNSKDNLNKNENENENENENE 221
Query: 197 NENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSKKSTEG 256
NEN E++N + NEN + N K EN + + E +EK++E +++K K E
Sbjct: 222 NEN-ENENENE--NENVNVNKKEKENEKEK-----ENEKEKEKEKEKEKEKEKEKVEYEE 273
Query: 257 D 257
D
Sbjct: 274 D 274
>MGI|MGI:107933 [details] [associations]
symbol:Mns1 "meiosis-specific nuclear structural protein 1"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0005882 "intermediate
filament" evidence=IDA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] MGI:MGI:107933
GO:GO:0007126 GO:GO:0005635 GO:GO:0005882
GeneTree:ENSGT00550000074599 CTD:55329 eggNOG:NOG116635
HOGENOM:HOG000006500 HOVERGEN:HBG108140 OrthoDB:EOG4QNMWG
InterPro:IPR026504 PANTHER:PTHR19265 OMA:AKTMMEE EMBL:BC046624
EMBL:D14849 IPI:IPI00126400 RefSeq:NP_032639.1 UniGene:Mm.387671
ProteinModelPortal:Q61884 STRING:Q61884 PhosphoSite:Q61884
PaxDb:Q61884 PRIDE:Q61884 Ensembl:ENSMUST00000034746 GeneID:17427
KEGG:mmu:17427 UCSC:uc009qpx.2 InParanoid:Q61884 NextBio:292052
Bgee:Q61884 CleanEx:MM_MNS1 Genevestigator:Q61884 Uniprot:Q61884
Length = 491
Score = 123 (48.4 bits), Expect = 0.00016, P = 0.00016
Identities = 86/411 (20%), Positives = 179/411 (43%)
Query: 19 VSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIV 78
++KLE Q Q+ +D + R +FL+ ++ + +++ ++ A KM + ++
Sbjct: 31 MNKLERQAKNQVVQNENDEKVERQRFLR-VLQNEQFELDMEEAIQKAEANKMLRDRQL-- 87
Query: 79 DALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDATLDDI-K 137
+ ++ ++L + + K ++ +++ I+ +++L Q L Y+ + + K
Sbjct: 88 EQEERLANELARLKHESLKDKKM-RQQVRENSIE-LREL-EQKLKAAYMNKERAAQIVEK 144
Query: 138 DFFK-KNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENK---DKN 193
D K + D +I I+M + D+L ++ K NKE A+ +L+ K D+
Sbjct: 145 DAMKYEQMKRDAEIERIMMEEH-DRLLKEESAKQER----RNKERAQYYLDLEKQLEDQE 199
Query: 194 LKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQ---QEYHEEKKQEVRSKRDKS 250
+ E E EK + + + + + E ++ + Q+Y EE ++ R K
Sbjct: 200 RRKQEAYEQLLKEKLMIDEIVRKIYEEDQVERQQKLEKKNAIQKYIEEFQRAQDFWRQKK 259
Query: 251 KKSTEGDGEGNTEGSKQVVLELPTGA-LLKISDIKEP-VSREDI-REVLEKV--QTDDQE 305
++ E + E + + E G + ++ +I+E V R+++ + LE+ Q DD E
Sbjct: 260 REEMEEENRKIIEFAN--IQEQREGERMARVHEIEEKRVQRQNLLMKQLEETLRQRDDLE 317
Query: 306 IVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVV---TGEEEQTVLD 362
V E E ++ K + AE L+ + +D E++ EEE+T
Sbjct: 318 QVRQELYQEEQAEIIKLKVKEEAELRLRRQREMKQDFEDQMALKELILQAAKEEEETFKK 377
Query: 363 RMKIDIFKR-RQKLMNEKKSGRKF--GKKGPRGTKRSRGGNFESNKKAKVE 410
M + R +LMN +K K K+ R F ++K+ ++E
Sbjct: 378 AMLAKFAEDDRIELMNAQKQRMKQLEHKRAVEKLIEERRSQFLADKQRELE 428
>CGD|CAL0002378 [details] [associations]
symbol:SBP1 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA]
[GO:0032055 "negative regulation of translation in response to
stress" evidence=IEA] [GO:0043047 "single-stranded telomeric DNA
binding" evidence=IEA] [GO:0031370 "eukaryotic initiation factor 4G
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0002378
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000003
EMBL:AACQ01000004 eggNOG:NOG72438 RefSeq:XP_722924.1
RefSeq:XP_723070.1 ProteinModelPortal:Q5ANP6 GeneID:3635280
GeneID:3635396 KEGG:cal:CaO19.13276 KEGG:cal:CaO19.5854
Uniprot:Q5ANP6
Length = 282
Score = 119 (46.9 bits), Expect = 0.00016, P = 0.00016
Identities = 55/257 (21%), Positives = 112/257 (43%)
Query: 115 KDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFK---GS 171
K +I +YV + AT D++K+ F +D+K+T + + +++ K FK G
Sbjct: 11 KPVIEDRIYVGNVDFKATEDELKELF-----QDLKVTEVEIP-FKENTRGDKVFKRHLGF 64
Query: 172 IFVTFDNKENAEKFL-NENKDKNLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIK 230
FV F+NK++A+K + N K + N + E K++ F E +K
Sbjct: 65 AFVQFENKDDADKAIATYNGQKFQRRNIFIKKAVPPPTEEEKKERVEAFKAKREEIKKVK 124
Query: 231 WQQEYHEEKKQEVRSKRD--KSKKSTEGDGEGNTEGSKQVVLE-LPTGALLKISDIKEPV 287
E+KK E + KR+ + +T +GE T S + + P+ + I+++ V
Sbjct: 125 ------EQKKAEAKKKREGATADAATTANGESATTDSTPAIPDGTPSKDTIFITNLDYKV 178
Query: 288 SREDIREVLEK-----VQTDDQEIVFIEFNVG----EP----TAFVRYKKENNAEAVLKA 334
+ + + + ++ + + + + G +P AFV++ E + +
Sbjct: 179 NVKTLNSLFKELKPKWIHVPSRRVPYNRRGRGGKFRKPFNKGIAFVKFSNEETQKQAVAE 238
Query: 335 LGSKEIVIKDVKVSIEV 351
KE+ +++ V I +
Sbjct: 239 FNGKEVNGREIIVDIAI 255
>DICTYBASE|DDB_G0289333 [details] [associations]
symbol:DDB_G0289333 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0289333 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
EMBL:AAFI02000139 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 eggNOG:NOG327281 RefSeq:XP_636262.1
ProteinModelPortal:Q54HN9 EnsemblProtists:DDB0188365 GeneID:8627081
KEGG:ddi:DDB_G0289333 InParanoid:Q54HN9 OMA:YADMIAM
ProtClustDB:CLSZ2846640 Uniprot:Q54HN9
Length = 621
Score = 124 (48.7 bits), Expect = 0.00017, P = 0.00017
Identities = 57/275 (20%), Positives = 121/275 (44%)
Query: 1 MAETDSSATNGNSGAEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTT 60
M + SS T + E LE+ I +QIEYY S NL+ D +L + ++ +V +
Sbjct: 1 MISSSSSTTTPITPQNLEGKALEDAIKKQIEYYLSRENLSTDYYLTSRMN-NEMFVAIEV 59
Query: 61 MLKFARLAKMTTEAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIAQ 120
+ F + +TT+ +IV+ + KS++ +I+ E T I+ P+F + +++I
Sbjct: 60 IANFKMVKNLTTDMNLIVEVMSKSSNVIID--ETKTLIK-------PSFKLQ--RNIII- 107
Query: 121 SLYVKYIPVDATLDDIKDFFKKN--TSEDVK--ITN---IIMRNYQDKLANQKKFKGSIF 173
++ IP + +++I+ F + T V+ I N I +D L + K
Sbjct: 108 ---LRDIPTETPVEEIRGIFSETGKTISSVRSDIGNYWFIQFDKEEDALEAHDQIKN--- 161
Query: 174 VTFDNKENAEKFLNENKDKNLKFNENCEHKNAEKFLNE-NKDKNLKFNENCEHSLLIKWQ 232
+TF +K+ + +E+ K + +H+ + N + + + +
Sbjct: 162 LTFKDKQIKARIKSESLMKTPSPAQQQQHQQQQHQQGRPNGAQFTPYQSSAASGAASSHR 221
Query: 233 QEYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQ 267
Y+ +KQ R+ + + ++ + + + +Q
Sbjct: 222 SSYYNGQKQWSRNYNNNNNSNSNYEQQQQAQQQQQ 256
>FB|FBgn0035424 [details] [associations]
symbol:CG11505 species:7227 "Drosophila melanogaster"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
EMBL:AE014296 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 InterPro:IPR006630 PROSITE:PS50961
eggNOG:COG5193 Pfam:PF05383 SMART:SM00715 HSSP:Q71RC2
GeneTree:ENSGT00530000063417 EMBL:BT010118 RefSeq:NP_647793.1
RefSeq:NP_728843.1 RefSeq:NP_995985.2 ProteinModelPortal:Q9I7T7
SMR:Q9I7T7 IntAct:Q9I7T7 MINT:MINT-298656 STRING:Q9I7T7
PaxDb:Q9I7T7 EnsemblMetazoa:FBtr0073046 GeneID:38399
KEGG:dme:Dmel_CG11505 UCSC:CG11505-RB FlyBase:FBgn0035424
InParanoid:Q9VZS2 OMA:TPNINAS OrthoDB:EOG4V15H8 PhylomeDB:Q9I7T7
ChiTaRS:CG11505 GenomeRNAi:38399 NextBio:808431 Bgee:Q9I7T7
Uniprot:Q9I7T7
Length = 1531
Score = 138 (53.6 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 30/105 (28%), Positives = 59/105 (56%)
Query: 2 AETDSSATNGNSGAEAEV--SKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELT 59
A+ + N G E + KL+ + Q+EYYFS NLA D +L ++ D +V +
Sbjct: 246 ADPQQGSHNAAGGEEPNIPLDKLKQMLATQLEYYFSRENLANDTYLLSQMDSDQ-YVPIY 304
Query: 60 TMLKFARLAKMTTEAKVIVDALKKSTSKLIEVNEDGTKIRRNPEK 104
T+ +F + K+T + +I + L++S + ++V++ G ++R N ++
Sbjct: 305 TVARFNLVRKLTNDINLITEVLRESPN--VQVDDKGLRVRPNRKR 347
Score = 43 (20.2 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 14/73 (19%), Positives = 38/73 (52%)
Query: 224 EHSLLIKWQQEYHEEKKQEV--RSKRDKSKKSTE-GDGEGNTEGSKQVVLELPTGALLKI 280
+H L+++ Q ++++Q+V + ++ + ++ E GDG ++ + Q V +
Sbjct: 759 QHHLVVQQTQPQQQQQQQQVVLQQQQVQVQELQEAGDGVEHSSHAMQQVNRSSNMSASSS 818
Query: 281 SDIKEPVSREDIR 293
S + +S+E ++
Sbjct: 819 SSLATSMSKEPLQ 831
Score = 37 (18.1 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 6/14 (42%), Positives = 12/14 (85%)
Query: 171 SIFVTFDNKENAEK 184
S ++TF++ E+A+K
Sbjct: 386 SWYITFESDEDAQK 399
>WB|WBGene00020097 [details] [associations]
symbol:larp-1 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0034046 "poly(G) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0040010 GO:GO:0008266
GO:GO:0002119 GO:GO:0010171 GO:GO:0040018 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0040035 GO:GO:0000932 GO:GO:0034046
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
InterPro:IPR006607 SMART:SM00684 GeneTree:ENSGT00390000000523
EMBL:FO080694 ProteinModelPortal:D5MCN2 SMR:D5MCN2 PRIDE:D5MCN2
EnsemblMetazoa:R144.7b KEGG:cel:CELE_R144.7 CTD:175680
WormBase:R144.7b OMA:CAEMNTL ArrayExpress:D5MCN2 Uniprot:D5MCN2
Length = 1150
Score = 127 (49.8 bits), Expect = 0.00018, P = 0.00018
Identities = 29/83 (34%), Positives = 53/83 (63%)
Query: 22 LENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDAL 81
L+ + +QIEYYFS+ NL +D FL+ ++ + G++ + + F R+ +T + +I++AL
Sbjct: 579 LKEYVRKQIEYYFSEENLQKDFFLRRKMGPE-GYLPVALIASFPRVRSLTEDYSLILEAL 637
Query: 82 KKSTSKLIEVNEDGTKIRR--NP 102
K ST ++++ DG +IR NP
Sbjct: 638 KDSTK--VDMSPDGLQIRAPVNP 658
>ZFIN|ZDB-GENE-041008-244 [details] [associations]
symbol:zgc:162969 "zgc:162969" species:7955 "Danio
rerio" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR002344 PRINTS:PR00302 ZFIN:ZDB-GENE-041008-244
GO:GO:0005634 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723
GO:GO:0006396 GO:GO:0030529 InterPro:IPR024642 Pfam:PF12901
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
HOVERGEN:HBG070244 GeneTree:ENSGT00510000048191 EMBL:CU062501
IPI:IPI00500994 UniGene:Dr.75982 Ensembl:ENSDART00000004483
OMA:YEYLEGA Uniprot:A8B8W4
Length = 471
Score = 122 (48.0 bits), Expect = 0.00019, P = 0.00019
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 25 QIIEQIEYYFSDINLARDKFLQGEIKKDD-GWVELTTMLKFARLAKMTTEAKVIVDALKK 83
QI Q+E Y SD NL+ D FL ++++ G+V L + F ++ +T + + + A +
Sbjct: 64 QIATQLENYLSDENLSDDAFLLKHVQRNKMGYVSLKLLTSFKKIRDLTRDWRTTLAAAR- 122
Query: 84 STSKLIEVNEDGTKIRR 100
TS +EVNE GTK+RR
Sbjct: 123 -TSLQLEVNEMGTKVRR 138
>FB|FBgn0261618 [details] [associations]
symbol:larp "La related protein" species:7227 "Drosophila
melanogaster" [GO:0005737 "cytoplasm" evidence=IDA] [GO:0035071
"salivary gland cell autophagic cell death" evidence=IEP]
[GO:0048102 "autophagic cell death" evidence=IEP] [GO:0003674
"molecular_function" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] [GO:0051225 "spindle assembly" evidence=IMP]
[GO:0007076 "mitotic chromosome condensation" evidence=IMP]
[GO:0051299 "centrosome separation" evidence=IMP] [GO:0007053
"spindle assembly involved in male meiosis" evidence=IMP]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0007140 "male
meiosis" evidence=IMP] [GO:0000001 "mitochondrion inheritance"
evidence=IMP] [GO:0035186 "syncytial blastoderm mitotic cell cycle"
evidence=IMP] EMBL:AE014297 GO:GO:0005829 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0000001 GO:GO:0035071
GO:GO:0035186 InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193
Pfam:PF05383 SMART:SM00715 InterPro:IPR006607 SMART:SM00684
ChiTaRS:LARP1 GeneTree:ENSGT00390000000523 EMBL:AF221108
EMBL:AY113653 EMBL:AY118468 EMBL:BT100187 RefSeq:NP_001163757.1
RefSeq:NP_001247347.1 RefSeq:NP_001247348.1 RefSeq:NP_524998.1
RefSeq:NP_733244.5 RefSeq:NP_733245.1 IntAct:Q9VAW5 STRING:Q9VAW5
PaxDb:Q9VAW5 PRIDE:Q9VAW5 EnsemblMetazoa:FBtr0301180
EnsemblMetazoa:FBtr0306389 EnsemblMetazoa:FBtr0306390 GeneID:53567
KEGG:dme:Dmel_CG42551 CTD:53567 FlyBase:FBgn0261618
InParanoid:Q9VAW5 OMA:EPEINEM PhylomeDB:Q9VAW5 GenomeRNAi:53567
NextBio:841422 Bgee:Q9VAW5 GermOnline:CG14066 GO:GO:0007053
Uniprot:Q9VAW5
Length = 1673
Score = 128 (50.1 bits), Expect = 0.00021, P = 0.00021
Identities = 35/93 (37%), Positives = 57/93 (61%)
Query: 16 EAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAK 75
E + + ++ I +Q+EYYFS NL D FL+ ++ + G++ +T + F R+ +TT+
Sbjct: 723 ELDANSIKEAIKKQVEYYFSVDNLTGDFFLRRKMDPE-GYIPVTLIASFHRVLALTTDVA 781
Query: 76 VIVDALKKSTSKLIEVNEDGTKIRRNPEKELPT 108
VIV+A+K+S KL E+ E G K+R K PT
Sbjct: 782 VIVNAIKES-DKL-ELFE-GYKVRT---KTTPT 808
>DICTYBASE|DDB_G0288067 [details] [associations]
symbol:mf12 species:44689 "Dictyostelium discoideum"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR015880 SMART:SM00355
dictyBase:DDB_G0288067 GO:GO:0008270 GenomeReviews:CM000154_GR
GO:GO:0005622 EMBL:AAFI02000109 RefSeq:XP_001134526.1
EnsemblProtists:DDB0233045 GeneID:8626468 KEGG:ddi:DDB_G0288067
eggNOG:euNOG31986 OMA:FDCLEND Uniprot:Q1ZXD8
Length = 1517
Score = 127 (49.8 bits), Expect = 0.00025, P = 0.00025
Identities = 64/260 (24%), Positives = 121/260 (46%)
Query: 141 KKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDN-KENAEKFLNENKDKNLKF-NE 198
KK T + + +N D+ A K+ + I T KENA + E + + LK N+
Sbjct: 370 KKVTKNKIDQQMELFKNESDE-ARMKREQSLINDTIIKIKENALSDIKEEEKQKLKDGNK 428
Query: 199 NCEHKNAEK----FLNENKD-KNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSK-- 251
+ KN EK +N+ + +N N N ++ L K Q+E +EK++E +++K K
Sbjct: 429 KSKGKNIEKEKENHINQTSNIENNNNNNNIDNELDEK-QKEKEKEKEKEKEKEKEKEKEK 487
Query: 252 -KSTEGDGEGNTEGSKQVVLE--LPTGALLKISDIKEPVSREDIRE----VLEKVQTDDQ 304
K T T +Q ++E + L +S+I E + E + E V +K+ DD+
Sbjct: 488 EKETTTTTTATTTDQQQTIIEEEIDEEYELLLSEIAEEILNEVVEELCGKVSKKIYLDDK 547
Query: 305 EIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVTGEEEQTVLDRM 364
+ N E + ++E E L+ ++I K+++ E+ E E+ +++
Sbjct: 548 R----KKNKEEKERELERERELERERELERERERQIKEKELEREREL---ERERERIEKE 600
Query: 365 KIDIFKRRQKLMNEKKSGRK 384
K+ + + R++ EK+ R+
Sbjct: 601 KL-LERERERKEKEKQLERE 619
>UNIPROTKB|Q96J85 [details] [associations]
symbol:LARP4 "La-related protein 4" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 SMART:SM00360 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 EMBL:AC090058 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HOGENOM:HOG000004803
UniGene:Hs.26613 DNASU:113251 GeneID:113251 KEGG:hsa:113251
CTD:113251 HGNC:HGNC:24320 PharmGKB:PA142671566 ChiTaRS:LARP4
GenomeRNAi:113251 NextBio:78808 RefSeq:NP_001164275.1 EMBL:AY004310
IPI:IPI01012507 SMR:Q96J85 STRING:Q96J85 Ensembl:ENST00000518561
HOVERGEN:HBG062469 Uniprot:Q96J85
Length = 375
Score = 119 (46.9 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 31/115 (26%), Positives = 65/115 (56%)
Query: 10 NGNSGAEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAK 69
+G S + L+ + +Q+E+ FS NL++D +L ++ D ++ + T+ + K
Sbjct: 37 SGESNSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQ-FIPIWTVANMEEIKK 95
Query: 70 MTTEAKVIVDALKKSTSKLIEVNEDGTKIRRNPEK------ELP-TFDIDFVKDL 117
+TT+ +I++ L+ +S +++V+E G K+R + ++ E+P T I+ VK L
Sbjct: 96 LTTDPDLILEVLR--SSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGL 148
Score = 39 (18.8 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 244 RSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGALLKISDIKEPVSRED 291
+ R K + + G E +TEGS + L G L + S P R +
Sbjct: 301 QKNRVKPQFRSSGGSEHSTEGS----VSLGDGQLNRYSSRNFPAERHN 344
Score = 37 (18.1 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 352 VTGEEEQTVLDR 363
VTG +EQT L +
Sbjct: 347 VTGHQEQTYLQK 358
>UNIPROTKB|H9KZD5 [details] [associations]
symbol:LARP4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007010 "cytoskeleton organization" evidence=IEA] [GO:0022604
"regulation of cell morphogenesis" evidence=IEA] InterPro:IPR000504
SMART:SM00360 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00530000063417 OMA:WTIANME EMBL:AADN02072425
EMBL:AADN02072426 Ensembl:ENSGALT00000009951 Uniprot:H9KZD5
Length = 750
Score = 123 (48.4 bits), Expect = 0.00029, P = 0.00029
Identities = 35/117 (29%), Positives = 65/117 (55%)
Query: 8 ATNGNSGAEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARL 67
A GNS E + + +Q+E+ FS NL++D +L ++ D +V + T+ +
Sbjct: 107 AGEGNSVVSTE--DIRECLRKQLEFCFSRENLSKDLYLMSQMDSDQ-FVPIWTIANMEGI 163
Query: 68 AKMTTEAKVIVDALKKSTSKLIEVNEDGTKIRRNPEK------ELP-TFDIDFVKDL 117
K+TT+ +I+D L+ +S +++V+E G K+R N ++ E+P T ++ VK L
Sbjct: 164 KKLTTDMDLILDVLR--SSPMVQVDETGEKVRPNHKRCIIILREIPETTPVEEVKAL 218
>GENEDB_PFALCIPARUM|PFF0505c [details] [associations]
symbol:PFF0505c "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0003723 "RNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR002483
InterPro:IPR012677 Pfam:PF00076 Pfam:PF01480 PROSITE:PS50102
PROSITE:PS51025 SMART:SM00360 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL844505 RefSeq:XP_966092.1
ProteinModelPortal:C6KSU9 IntAct:C6KSU9
EnsemblProtists:PFF0505c:mRNA GeneID:3885919 KEGG:pfa:PFF0505c
EuPathDB:PlasmoDB:PF3D7_0610200 OMA:INWRERE ProtClustDB:CLSZ2515317
Uniprot:C6KSU9
Length = 960
Score = 123 (48.4 bits), Expect = 0.00039, P = 0.00039
Identities = 65/279 (23%), Positives = 125/279 (44%)
Query: 3 ETDSSATNGNSGAEAEVSKL--ENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTT 60
E+D+SA + + E +K E ++ EQ + +I + E+KK + ++
Sbjct: 489 ESDTSAMSNSKRREIRRAKRKKEKELDEQDK--LDEIKEVEEMKKMEEMKKMEEMKKMEE 546
Query: 61 MLKFARLAKMTTEAKVIVDALKKSTSKLIEVNEDGTKIRRNP-EKELPTFDIDFV-KDLI 118
M K + KM E K + + K K +E NE+ R++ +K T + D K+
Sbjct: 547 MKKMEEIKKME-EMKKMEEMKKMEEIKKMEENENNINNRKDEYDKNDYTLEKDDNNKNSS 605
Query: 119 AQSLYVK----YIPVDATLDDIKDFFKKNTSEDVKITNIIM-RNY-QDKLANQKKFKGSI 172
+++ + ++ DDI FF+ N +K+ ++Y QD N+++ K +
Sbjct: 606 IVNMHKNNNDNILTSNSGSDDIS-FFENN---HIKLKKKKRDKSYTQDDDYNEEEEKKEV 661
Query: 173 FVTFDNKENAEKFLNENKDKNLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQ 232
F+ K + K+ N NK+ NL FN ++ N+E N +++ + H+ ++
Sbjct: 662 FI----KNDKTKYKNNNKN-NLLFNCYNKYNNSEYSYNSDEEDDKVSVSKYIHTSSSEYD 716
Query: 233 QEYHEEKKQEVRSKRDKS---KKSTEGDGEGNTEGSKQV 268
KK+E + K+D +K T + E EG + +
Sbjct: 717 SYEKRRKKEEKKKKKDDDNYKRKMTNTEYENIKEGEQNI 755
>UNIPROTKB|C6KSU9 [details] [associations]
symbol:PFF0505c "Putative uncharacterized protein"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR002483
InterPro:IPR012677 Pfam:PF00076 Pfam:PF01480 PROSITE:PS50102
PROSITE:PS51025 SMART:SM00360 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL844505 RefSeq:XP_966092.1
ProteinModelPortal:C6KSU9 IntAct:C6KSU9
EnsemblProtists:PFF0505c:mRNA GeneID:3885919 KEGG:pfa:PFF0505c
EuPathDB:PlasmoDB:PF3D7_0610200 OMA:INWRERE ProtClustDB:CLSZ2515317
Uniprot:C6KSU9
Length = 960
Score = 123 (48.4 bits), Expect = 0.00039, P = 0.00039
Identities = 65/279 (23%), Positives = 125/279 (44%)
Query: 3 ETDSSATNGNSGAEAEVSKL--ENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTT 60
E+D+SA + + E +K E ++ EQ + +I + E+KK + ++
Sbjct: 489 ESDTSAMSNSKRREIRRAKRKKEKELDEQDK--LDEIKEVEEMKKMEEMKKMEEMKKMEE 546
Query: 61 MLKFARLAKMTTEAKVIVDALKKSTSKLIEVNEDGTKIRRNP-EKELPTFDIDFV-KDLI 118
M K + KM E K + + K K +E NE+ R++ +K T + D K+
Sbjct: 547 MKKMEEIKKME-EMKKMEEMKKMEEIKKMEENENNINNRKDEYDKNDYTLEKDDNNKNSS 605
Query: 119 AQSLYVK----YIPVDATLDDIKDFFKKNTSEDVKITNIIM-RNY-QDKLANQKKFKGSI 172
+++ + ++ DDI FF+ N +K+ ++Y QD N+++ K +
Sbjct: 606 IVNMHKNNNDNILTSNSGSDDIS-FFENN---HIKLKKKKRDKSYTQDDDYNEEEEKKEV 661
Query: 173 FVTFDNKENAEKFLNENKDKNLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQ 232
F+ K + K+ N NK+ NL FN ++ N+E N +++ + H+ ++
Sbjct: 662 FI----KNDKTKYKNNNKN-NLLFNCYNKYNNSEYSYNSDEEDDKVSVSKYIHTSSSEYD 716
Query: 233 QEYHEEKKQEVRSKRDKS---KKSTEGDGEGNTEGSKQV 268
KK+E + K+D +K T + E EG + +
Sbjct: 717 SYEKRRKKEEKKKKKDDDNYKRKMTNTEYENIKEGEQNI 755
>DICTYBASE|DDB_G0269962 [details] [associations]
symbol:DDB_G0269962 species:44689 "Dictyostelium
discoideum" [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR009057 dictyBase:DDB_G0269962 EMBL:AAFI02000005
GO:GO:0003677 SUPFAM:SSF46689 RefSeq:XP_646432.1
ProteinModelPortal:Q55CP9 EnsemblProtists:DDB0190700 GeneID:8617391
KEGG:ddi:DDB_G0269962 eggNOG:NOG289666 OMA:NETTIRR Uniprot:Q55CP9
Length = 788
Score = 122 (48.0 bits), Expect = 0.00040, P = 0.00040
Identities = 41/138 (29%), Positives = 59/138 (42%)
Query: 132 TLDDIKDFFKKNTSEDVK---ITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNE 188
TLD+I+D+ K + D IT+I+ RN K+ KK K + DN N++ +N
Sbjct: 366 TLDEIQDYLNKKHNVDASFPYITHILKRN---KIKVYKKRKIKVVDDLDN--NSDNDINN 420
Query: 189 NKDKNLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRD 248
N + N N N N N N + N N N ++ Y + Q V SK
Sbjct: 421 NNNINNNINNNNNTINNNNNNNNNNNNNNNNNNNTINNNNNNSSSTYKDG--QNVNSKNV 478
Query: 249 KSKKSTEGDGEGNTEGSK 266
SKK+ D G + K
Sbjct: 479 NSKKNNSDDNSGGNQKKK 496
>DICTYBASE|DDB_G0270444 [details] [associations]
symbol:DDB_G0270444 "protein kinase, CMGC group"
species:44689 "Dictyostelium discoideum" [GO:0016772 "transferase
activity, transferring phosphorus-containing groups" evidence=IEA]
[GO:0006468 "protein phosphorylation" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR017986 InterPro:IPR000719 InterPro:IPR001680
InterPro:IPR011009 InterPro:IPR015943 Pfam:PF00069 Pfam:PF00400
PROSITE:PS50011 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
dictyBase:DDB_G0270444 GO:GO:0005524 EMBL:AAFI02000005
Gene3D:2.130.10.10 PROSITE:PS00678 InterPro:IPR019775
eggNOG:COG0515 SUPFAM:SSF56112 GO:GO:0004672 InterPro:IPR011047
SUPFAM:SSF50998 HSSP:Q9WZF7 RefSeq:XP_646809.1
ProteinModelPortal:Q55BM1 EnsemblProtists:DDB0230126 GeneID:8617795
KEGG:ddi:DDB_G0270444 InParanoid:Q55BM1 OMA:NIPVHEN Uniprot:Q55BM1
Length = 1360
Score = 124 (48.7 bits), Expect = 0.00046, P = 0.00046
Identities = 68/264 (25%), Positives = 124/264 (46%)
Query: 127 IPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFL 186
IP D +L DI N E V I N +D ++ K+ I D KEN +
Sbjct: 982 IPKDDSLTDISS----NKQETVVYDANIQINQEDLISKIKE--NEIQKEIDFKENQ---I 1032
Query: 187 NENKDKNLK--FNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVR 244
NE +++K E+ + + E+ E+K+ + E + + I+ QE EE K+EV+
Sbjct: 1033 NEEIKEDVKEEIEEDIKEEIKEEIKEESKEVQEEAKEEIKEEIQIE-TQEVKEEIKEEVQ 1091
Query: 245 S--KRDKSKKSTEGDGEGNT-----EGSKQVVLE-LPTGALLKISD-IKEPVSREDIREV 295
K +K K+ + + + T E +K + E + ++I + IKE ++E+I+E+
Sbjct: 1092 VEIKEEKIKEEIKEEIKEETQEEIKEENKDEIQETIKEEVQVEIKEEIKEE-TQEEIKEI 1150
Query: 296 LEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVTGE 355
L +VQ ++ I+ V + T ++E E +E + ++VK I+ E
Sbjct: 1151 LNEVQVKEEVKEEIQEEVSQET-LSEIQEEVKEEI-------QEDIKEEVKEEIQNEIRE 1202
Query: 356 EEQT-VLDRMKIDIFKRRQKLMNE 378
E Q + + +K +I K +++ NE
Sbjct: 1203 EIQNEIREEIKEEIKKVSEEIQNE 1226
>UNIPROTKB|F1MHD9 [details] [associations]
symbol:LARP4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0022604 "regulation of cell morphogenesis"
evidence=IEA] [GO:0007010 "cytoskeleton organization" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
SMART:SM00360 GO:GO:0007010 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0022604 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 GeneTree:ENSGT00530000063417 OMA:WTIANME
EMBL:DAAA02012927 IPI:IPI01002357 Ensembl:ENSBTAT00000022821
Uniprot:F1MHD9
Length = 621
Score = 120 (47.3 bits), Expect = 0.00048, P = 0.00048
Identities = 32/115 (27%), Positives = 66/115 (57%)
Query: 10 NGNSGAEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAK 69
+G S + +L+ + +Q+E+ FS NL++D +L ++ D +V + T+ + K
Sbjct: 106 SGESNSAISTEELKECLKKQLEFCFSRENLSKDLYLISQMDSDQ-FVPIWTVANMEEIKK 164
Query: 70 MTTEAKVIVDALKKSTSKLIEVNEDGTKIRRNPEK------ELP-TFDIDFVKDL 117
+TT+ +I++ L+ +S +++V+E G K+R + ++ E+P T I+ VK L
Sbjct: 165 LTTDPDLILEVLR--SSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKAL 217
>TAIR|locus:2098443 [details] [associations]
symbol:AT3G28770 "AT3G28770" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0009827 "plant-type cell wall modification"
evidence=RCA] [GO:0009860 "pollen tube growth" evidence=RCA]
EMBL:CP002686 GenomeReviews:BA000014_GR HSSP:P01096 eggNOG:NOG12793
EMBL:AP002057 InterPro:IPR009605 Pfam:PF06746 IPI:IPI00529324
RefSeq:NP_189519.1 UniGene:At.42736 ProteinModelPortal:Q9LH98
PaxDb:Q9LH98 PRIDE:Q9LH98 EnsemblPlants:AT3G28770.1 GeneID:822509
KEGG:ath:AT3G28770 TAIR:At3g28770 OMA:SKNEILM
ProtClustDB:CLSN2912834 Genevestigator:Q9LH98 Uniprot:Q9LH98
Length = 2081
Score = 137 (53.3 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 89/417 (21%), Positives = 170/417 (40%)
Query: 3 ETDSSATNGNSGAEAEVSKLENQIIEQIEYYFS--DINLARDKFLQGEI----KKDDGWV 56
+ D S+ G G E +E++ +E E D DK + +I KDD V
Sbjct: 687 KNDGSSEKGEEGKENNKDSMEDKKLENKESQTDSKDDKSVDDKQEEAQIYGGESKDDKSV 746
Query: 57 ELTTMLKFARLAKMTTEAKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKD 116
E K ++ K T K + ++ + ++ K+ + +KE KD
Sbjct: 747 EAKGKKKESKENKKT---KTNENRVRNKEENVQGNKKESEKVEKGEKKES--------KD 795
Query: 117 LIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTF 176
A+S+ K ++ ++ +D K+ + ED K ++YQ A +K G +
Sbjct: 796 --AKSVETKDNKKLSSTEN-RDEAKERSGEDNKEDKEESKDYQSVEAKEKNENGGVDTNV 852
Query: 177 DNKENAEKFLNENKDKNLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQ--- 233
NKE++ K L +++ +K N+ K + + N + K + +++ I Q+
Sbjct: 853 GNKEDS-KDLKDDRSVEVKANKEESMKKKREEVQRNDKSSTKEVRDFANNMDIDVQKGSG 911
Query: 234 ---EYHEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGALLKISDIKEPVSRE 290
+Y +++K+E + +K +T +G + K+ E + K KE +E
Sbjct: 912 ESVKYKKDEKKEGNKEENKDTINTSSKQKGKDKKKKKK--ESKNSNMKK----KEEDKKE 965
Query: 291 DIREVLEKVQTDDQEIVFIEFN-VGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSI 349
+ L+K + + +E E + + E + KKE+ ++ K KE K K
Sbjct: 966 YVNNELKKQEDNKKETTKSENSKLKEENKDNKEKKESE-DSASKNREKKEYEEKKSKTKE 1024
Query: 350 EVVTGEEEQTVLDRMKIDIFKRRQKLMNEKKSGRKFGKKGPRGTKRSRGGNFESNKK 406
E +++ R + D +R+ K E+ K KK ++ N +S KK
Sbjct: 1025 EAKKEKKKSQDKKREEKDSEERKSKKEKEESRDLKAKKKEEETKEKKESENHKSKKK 1081
Score = 37 (18.1 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 9 TNGNSGAEAEVSKLENQ 25
T GN+G + LEN+
Sbjct: 589 TQGNNGESVKNENLENK 605
>UNIPROTKB|E9PDG5 [details] [associations]
symbol:LARP4 "La-related protein 4" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 SMART:SM00360 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 EMBL:AC090058 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 UniGene:Hs.26613
DNASU:113251 GeneID:113251 KEGG:hsa:113251 CTD:113251
HGNC:HGNC:24320 ChiTaRS:LARP4 GenomeRNAi:113251 NextBio:78808
IPI:IPI00418689 RefSeq:NP_001164275.1 ProteinModelPortal:E9PDG5
SMR:E9PDG5 Ensembl:ENST00000522085 ArrayExpress:E9PDG5 Bgee:E9PDG5
Uniprot:E9PDG5
Length = 445
Score = 119 (46.9 bits), Expect = 0.00058, Sum P(3) = 0.00058
Identities = 31/115 (26%), Positives = 65/115 (56%)
Query: 10 NGNSGAEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAK 69
+G S + L+ + +Q+E+ FS NL++D +L ++ D ++ + T+ + K
Sbjct: 107 SGESNSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQ-FIPIWTVANMEEIKK 165
Query: 70 MTTEAKVIVDALKKSTSKLIEVNEDGTKIRRNPEK------ELP-TFDIDFVKDL 117
+TT+ +I++ L+ +S +++V+E G K+R + ++ E+P T I+ VK L
Sbjct: 166 LTTDPDLILEVLR--SSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGL 218
Score = 39 (18.8 bits), Expect = 0.00058, Sum P(3) = 0.00058
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 244 RSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGALLKISDIKEPVSRED 291
+ R K + + G E +TEGS + L G L + S P R +
Sbjct: 371 QKNRVKPQFRSSGGSEHSTEGS----VSLGDGQLNRYSSRNFPAERHN 414
Score = 37 (18.1 bits), Expect = 0.00058, Sum P(3) = 0.00058
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 352 VTGEEEQTVLDR 363
VTG +EQT L +
Sbjct: 417 VTGHQEQTYLQK 428
>DICTYBASE|DDB_G0270880 [details] [associations]
symbol:gflC "PHD zinc finger-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00628 PROSITE:PS50016 SMART:SM00249
dictyBase:DDB_G0270880 EMBL:AAFI02000005 GenomeReviews:CM000150_GR
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 eggNOG:NOG243978 RefSeq:XP_001134472.1
ProteinModelPortal:Q1ZXQ2 EnsemblProtists:DDB0231781 GeneID:8616983
KEGG:ddi:DDB_G0270880 InParanoid:Q1ZXQ2 OMA:HECEDEA Uniprot:Q1ZXQ2
Length = 1720
Score = 124 (48.7 bits), Expect = 0.00060, P = 0.00060
Identities = 71/335 (21%), Positives = 140/335 (41%)
Query: 81 LKKSTSKLIEVNEDGTKIRRNPEK-ELPTFDIDFVKDLIAQSLYVKYIPVDATLDDIKDF 139
+KK T + E ED I +P+K E P + L+ + P+ A + K+
Sbjct: 704 IKKLTIEK-EEGEDKEVIIDSPQKVESP---LSSTTTLLP--ITPPIAPIIANGNQNKNN 757
Query: 140 FKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFNEN 199
K ++SED+ + ++ + K N+ K + N + L E KDK ++F +
Sbjct: 758 KKISSSEDLDVDILVDDDESTKSVNKNHLKKELINNHQNNAKEKDVLQE-KDKIIQFEKE 816
Query: 200 CE-HKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEVRSKRDKSK------- 251
E K EK + + K+K + + E + ++E +EK++E +++K K
Sbjct: 817 KEKEKEKEKEIEKEKEKEREREKEKERETETETEKEKEKEKEKEKEKEKEKEKEKEKERE 876
Query: 252 KSTEGDGEGNTEGSKQVVLELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEF 311
K E + E E K+ E + + + +E +E EK + D+E + I+
Sbjct: 877 KEREREREREREKEKEKEKEKEKEKEKEKREKEREREKEREKEKREKERERDREQLEIQQ 936
Query: 312 NVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVTGEEEQTVLDRMKIDIFKR 371
+ +K E + +E+ K+ + ++++ EQ +L + +I+ K+
Sbjct: 937 REQREREREQREKSQERERDRERERDRELREKE-RERLQLI---REQQLLKQQQIEREKQ 992
Query: 372 --RQKLMNEKKSGRKFGKKGPRGTKRSRGGNFESN 404
R++L E + R G + N +N
Sbjct: 993 MLREQLSKEIEMERSLGTINNNNNNNNENNNNNNN 1027
>UNIPROTKB|G3XAA8 [details] [associations]
symbol:LARP4 "La-related protein 4" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 SMART:SM00360 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 EMBL:CH471111 GO:GO:0030529
EMBL:AC090058 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 RefSeq:NP_001164279.1 UniGene:Hs.26613 GeneID:113251
KEGG:hsa:113251 CTD:113251 HGNC:HGNC:24320 ChiTaRS:LARP4
GenomeRNAi:113251 NextBio:78808 ProteinModelPortal:G3XAA8
SMR:G3XAA8 PRIDE:G3XAA8 Ensembl:ENST00000293618 ArrayExpress:G3XAA8
Bgee:G3XAA8 Uniprot:G3XAA8
Length = 653
Score = 119 (46.9 bits), Expect = 0.00066, P = 0.00066
Identities = 31/115 (26%), Positives = 65/115 (56%)
Query: 10 NGNSGAEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAK 69
+G S + L+ + +Q+E+ FS NL++D +L ++ D ++ + T+ + K
Sbjct: 107 SGESNSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQ-FIPIWTVANMEEIKK 165
Query: 70 MTTEAKVIVDALKKSTSKLIEVNEDGTKIRRNPEK------ELP-TFDIDFVKDL 117
+TT+ +I++ L+ +S +++V+E G K+R + ++ E+P T I+ VK L
Sbjct: 166 LTTDPDLILEVLR--SSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGL 218
>UNIPROTKB|Q8IIG7 [details] [associations]
symbol:PF11_0207 "Uncharacterized protein PF11_0207"
species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005737 "cytoplasm" evidence=NAS] [GO:0016020
"membrane" evidence=NAS] GO:GO:0005737 GO:GO:0016020
eggNOG:NOG12793 EMBL:AE014186 HSSP:Q8NX77 RefSeq:XP_001347878.2
ProteinModelPortal:Q8IIG7 IntAct:Q8IIG7 MINT:MINT-1550464
GeneID:810754 KEGG:pfa:PF11_0207 EuPathDB:PlasmoDB:PF3D7_1120000
HOGENOM:HOG000282317 ProtClustDB:CLSZ2500892 Uniprot:Q8IIG7
Length = 1070
Score = 121 (47.7 bits), Expect = 0.00074, P = 0.00074
Identities = 75/408 (18%), Positives = 178/408 (43%)
Query: 6 SSATNGNSGAEAEVSKLENQIIEQIEYYFSDI-NLARDKFLQGEIKKDDGWVELTTMLKF 64
S+ N + + S + N+ E + FS++ N +++ + + K + + L + ++
Sbjct: 401 SNVRNKKKEDDLDFSNVRNKKKED-DLDFSNLRNKKKEESKENDTNKSEKPLYLRRLEEY 459
Query: 65 ARLAKMTTEAKVIVDALKKSTSKLIE-VNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLY 123
+ K+ ++A A+K + I+ + E +I+ ++E+ +I +K+ I +
Sbjct: 460 RKKKKLESQANDT--AMKMHEKEQIDDIQERKEEIKEEFKEEVKE-EIKEIKEEIKEVKE 516
Query: 124 VKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAE 183
+ + ++K+ K+ E++K ++ ++++ K+ K I + KE +
Sbjct: 517 EIKEEIKEEIKEVKEEIKEEIKEEIKEVKEEIKEVKEEI---KEVKEEIK---EVKEEIK 570
Query: 184 KFLNENKDKNLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEV 243
+ + E K++ +K E K ++ + E + +K E E +K +E EE K+E+
Sbjct: 571 EEIKEVKEE-IKEEIKEEIKEVKEEIKEEVKEEIK--EVKEEIKEVK--EEIKEEVKEEI 625
Query: 244 RSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGALLKISDIKEPVSREDIREVLEKVQTDD 303
+ +++ K+ E E E +++ E+ +I +IKE + + E ++ + +
Sbjct: 626 KEVKEEIKEVKEEIKEEIKEVKEEIKEEVKEEIKEEIKEIKEELKNDISSETTKEEKNTE 685
Query: 304 QEIVFIEFNVGEPTAFVRYKKE--NNAEAVLKALGSKEIVIKDVKVSIEVVTGEEEQTVL 361
+ E P + Y++E E LK L + K+ ++ ++++ + + T
Sbjct: 686 HKKEETEKKKFIPKRVIMYQQELKEKEERNLKLLEQQR---KEREMRLQLIRSKTQGTSS 742
Query: 362 DRMKIDIFKRRQKLMNEKKSGRKFGKKGPRGTKRSRGGNFESNKKAKV 409
+ K + L EKK K + P+ + N +N V
Sbjct: 743 TFIPSAKLKHLESLKEEKKKEVKTNIQ-PKDNNNNNNNNNNNNNNIAV 789
>DICTYBASE|DDB_G0302588 [details] [associations]
symbol:DDB_G0302588 "RanBP2-type zinc finger"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001876 PROSITE:PS01358 SMART:SM00547
dictyBase:DDB_G0302588 GO:GO:0008270 EMBL:AAFI02000003
GO:GO:0005622 RefSeq:XP_002649209.1 EnsemblProtists:DDB0302589
GeneID:8616202 KEGG:ddi:DDB_G0302588 OMA:VKFESPA Uniprot:C7FZW3
Length = 3566
Score = 138 (53.6 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 68/245 (27%), Positives = 114/245 (46%)
Query: 175 TFDNKENAEKFLNENKDKNLKFNENCEHKNAEKFLNENKDKNLKFNENCEHSLLIKWQQE 234
TF++ N EK +DKN + +E + K+ K NE KD+N K E E S K ++E
Sbjct: 2656 TFESI-NKEK--ESVEDKNQEKDELKDEKDELKDENEKKDENEKKEETVE-SDKEKEKEE 2711
Query: 235 YHEEKKQEVRS--KRDKSKKSTEGDGEGNTEGSKQVVLELPTGALLKISDIKEPVSREDI 292
EE KQ + S K +K ++ E + + E K+ LE T ++ SD KE E +
Sbjct: 2712 TLEETKQSIESDKKEEKKEEKLEEIVQSDKEKEKEETLE-ETKQSIE-SDKKEDEKEEKL 2769
Query: 293 REVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKA--LGSKEIVIKDVKVSIE 350
E++E + ++E E + +KE E ++++ KE ++++K SIE
Sbjct: 2770 EEIVESDKEKEKEETLEETKQSIESDKKEDEKEEKLEEIVQSDKEKEKEETLEEIKQSIE 2829
Query: 351 VVTGEEEQTVLDRMKIDIFKRRQKLMNEKKSGRKFGK--KGP--RGTKRSRGGNFES-NK 405
+ ++E D M+ +F R ++ + K + KG + K ES N+
Sbjct: 2830 SESDKKE----DEME-KVFSRIEETIKPNFFSTKEDEEEKGDELKDEKDENENEIESDNE 2884
Query: 406 KAKVE 410
K K E
Sbjct: 2885 KEKEE 2889
Score = 39 (18.8 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 10/46 (21%), Positives = 21/46 (45%)
Query: 138 DFFKKNT-SEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENA 182
D K N E+ + + + +++D ++K + + T NK A
Sbjct: 872 DLPKFNVVEEEEEEEEVDINSFKDVFLQRRKERAELLKTLSNKRKA 917
>TAIR|locus:2125334 [details] [associations]
symbol:LARP1c "La related protein 1c" species:3702
"Arabidopsis thaliana" [GO:0009507 "chloroplast" evidence=ISM]
[GO:0048523 "negative regulation of cellular process" evidence=RCA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0010150 "leaf senescence"
evidence=IMP] GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010150
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
EMBL:AF370207 EMBL:AY133869 IPI:IPI00542126 RefSeq:NP_567991.1
UniGene:At.23352 UniGene:At.70045 ProteinModelPortal:Q94K80
SMR:Q94K80 PRIDE:Q94K80 EnsemblPlants:AT4G35890.1 GeneID:829743
KEGG:ath:AT4G35890 TAIR:At4g35890 HOGENOM:HOG000151189
InParanoid:Q94K80 OMA:MSPRRIS PhylomeDB:Q94K80
ProtClustDB:CLSN2917672 Genevestigator:Q94K80 Uniprot:Q94K80
Length = 523
Score = 117 (46.2 bits), Expect = 0.00081, P = 0.00081
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 22 LENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDAL 81
L ++ +QI+YYFSD NL D +L+G ++G+V L + F ++A++T + IV+AL
Sbjct: 369 LHMKLHKQIQYYFSDENLITDIYLRG-FMNNEGFVPLRVVAGFKKVAELTDNIQQIVEAL 427
Query: 82 KKSTSKLIEVNEDGTKIRRN 101
+ S +EV D + R N
Sbjct: 428 QNSPH--VEVQGDFIRKRDN 445
>GENEDB_PFALCIPARUM|PF14_0088 [details] [associations]
symbol:PF14_0088 "hypothetical protein"
species:5833 "Plasmodium falciparum" [GO:0008150
"biological_process" evidence=ND] [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR001395 Pfam:PF00248 Gene3D:3.20.20.100
InterPro:IPR023210 PANTHER:PTHR11732 SUPFAM:SSF51430 EMBL:AE014187
RefSeq:XP_001348261.2 ProteinModelPortal:Q8IM05 IntAct:Q8IM05
MINT:MINT-1576491 EnsemblProtists:PF14_0088:mRNA GeneID:811669
KEGG:pfa:PF14_0088 EuPathDB:PlasmoDB:PF3D7_1409100
ProtClustDB:CLSZ2433424 Uniprot:Q8IM05
Length = 1212
Score = 121 (47.7 bits), Expect = 0.00085, P = 0.00085
Identities = 88/379 (23%), Positives = 162/379 (42%)
Query: 32 YYFSDINLARDKFLQGEI-KKDDGWVELTTMLKFARLAKMTTEAKVIVDALKKSTSKLIE 90
Y ++N + K ++ K+ D + T+ K T +A + + +K TSK
Sbjct: 114 YEIYNLNKNKQKLYSNDLGKEQDKKKKNTSKNKTETRNTQTNKADKSILSTEKKTSK--- 170
Query: 91 VNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKI 150
+ + +N K+ I + ++ +K + + T + KD KK + K
Sbjct: 171 -TKSTLRKNKNNAKKKDNITIQANNE---ENKEIKQLQFETT--ENKDTQKKKKTYKKKE 224
Query: 151 TNIIMRNYQDKLANQKKFKGSIFVTFDNKENAE-KFLNENKD--KNLKFNENCE-HKNAE 206
T+ I N DK+ K K T NK+ A+ K +NK K+ K EN + KN +
Sbjct: 225 TDNI-EN-ADKMEETDKKKE----TEKNKKKAQNKKTAKNKKTAKDKKTAENKKIAKNKK 278
Query: 207 KFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEV--RSKRDKSKKSTEGDGEGNTEG 264
N+ +N K +N + + K + KKQE + DK KK T + N E
Sbjct: 279 TAQNKKTAQNKKTAKNKKTAKNKKTAKNQETTKKQETPPNEETDKKKKPTLRKNKIN-ES 337
Query: 265 SKQVVLEL-------PTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPT 317
+ + L+L G ++ ++P+S+E+ E +++ + + E++ E N G+
Sbjct: 338 KETLNLQLINKNEENQNGKAPTDNENQKPISKEN--EKIKEQEIELAELIKRERNYGDED 395
Query: 318 A----FVRYKKENNAEAVLKALGSKEIVIKDVK-VSIEVVTGEEEQTVLDRMK-IDIFKR 371
Y E + + + EIV ++ K ++ + E+E+ L+R K ID K+
Sbjct: 396 DDEENLEEYYDELQNDNHTQDMSDNEIVEEEEKRKKMKSIEEEKEKEKLERQKKIDFIKK 455
Query: 372 RQKLMNEKKSGRKFGKKGP 390
+ L+ E + +K P
Sbjct: 456 VEHLLEEDQKNHVLYEKRP 474
>UNIPROTKB|Q8IM05 [details] [associations]
symbol:PF14_0088 "Aldo/keto reductase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0008150
"biological_process" evidence=ND] [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR001395 Pfam:PF00248 Gene3D:3.20.20.100
InterPro:IPR023210 PANTHER:PTHR11732 SUPFAM:SSF51430 EMBL:AE014187
RefSeq:XP_001348261.2 ProteinModelPortal:Q8IM05 IntAct:Q8IM05
MINT:MINT-1576491 EnsemblProtists:PF14_0088:mRNA GeneID:811669
KEGG:pfa:PF14_0088 EuPathDB:PlasmoDB:PF3D7_1409100
ProtClustDB:CLSZ2433424 Uniprot:Q8IM05
Length = 1212
Score = 121 (47.7 bits), Expect = 0.00085, P = 0.00085
Identities = 88/379 (23%), Positives = 162/379 (42%)
Query: 32 YYFSDINLARDKFLQGEI-KKDDGWVELTTMLKFARLAKMTTEAKVIVDALKKSTSKLIE 90
Y ++N + K ++ K+ D + T+ K T +A + + +K TSK
Sbjct: 114 YEIYNLNKNKQKLYSNDLGKEQDKKKKNTSKNKTETRNTQTNKADKSILSTEKKTSK--- 170
Query: 91 VNEDGTKIRRNPEKELPTFDIDFVKDLIAQSLYVKYIPVDATLDDIKDFFKKNTSEDVKI 150
+ + +N K+ I + ++ +K + + T + KD KK + K
Sbjct: 171 -TKSTLRKNKNNAKKKDNITIQANNE---ENKEIKQLQFETT--ENKDTQKKKKTYKKKE 224
Query: 151 TNIIMRNYQDKLANQKKFKGSIFVTFDNKENAE-KFLNENKD--KNLKFNENCE-HKNAE 206
T+ I N DK+ K K T NK+ A+ K +NK K+ K EN + KN +
Sbjct: 225 TDNI-EN-ADKMEETDKKKE----TEKNKKKAQNKKTAKNKKTAKDKKTAENKKIAKNKK 278
Query: 207 KFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQEV--RSKRDKSKKSTEGDGEGNTEG 264
N+ +N K +N + + K + KKQE + DK KK T + N E
Sbjct: 279 TAQNKKTAQNKKTAKNKKTAKNKKTAKNQETTKKQETPPNEETDKKKKPTLRKNKIN-ES 337
Query: 265 SKQVVLEL-------PTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPT 317
+ + L+L G ++ ++P+S+E+ E +++ + + E++ E N G+
Sbjct: 338 KETLNLQLINKNEENQNGKAPTDNENQKPISKEN--EKIKEQEIELAELIKRERNYGDED 395
Query: 318 A----FVRYKKENNAEAVLKALGSKEIVIKDVK-VSIEVVTGEEEQTVLDRMK-IDIFKR 371
Y E + + + EIV ++ K ++ + E+E+ L+R K ID K+
Sbjct: 396 DDEENLEEYYDELQNDNHTQDMSDNEIVEEEEKRKKMKSIEEEKEKEKLERQKKIDFIKK 455
Query: 372 RQKLMNEKKSGRKFGKKGP 390
+ L+ E + +K P
Sbjct: 456 VEHLLEEDQKNHVLYEKRP 474
>GENEDB_PFALCIPARUM|PF11_0213 [details] [associations]
symbol:PF11_0213 "hypothetical protein"
species:5833 "Plasmodium falciparum" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] GO:GO:0016021 eggNOG:NOG12793 EMBL:AE014186
RefSeq:XP_001347884.2 GeneID:810760 KEGG:pfa:PF11_0213
EuPathDB:PlasmoDB:PF3D7_1120600 Uniprot:Q8IIG1
Length = 2545
Score = 124 (48.7 bits), Expect = 0.00092, P = 0.00092
Identities = 58/259 (22%), Positives = 117/259 (45%)
Query: 137 KDFFKKNTSEDVKITNIIMRNYQDKLANQKK-FKGSIFVTFDNKENAEKFLNENKDKNLK 195
++F KN +++ NII N + ++K+ FK ++N + NE ++N K
Sbjct: 331 ENFLLKNNEQNIN-NNIINVNQKQSSDHKKESFKIDTKKNDQIEQNYQNGKNEKNEENEK 389
Query: 196 FNENCEH-KNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQ-EVRSKRDKSKKS 253
N ++ KN + NE KN + +N + + +Q + +++ Q + K D+++K+
Sbjct: 390 NGMNEQNGKNEQNGKNEQNGKNEQNEQNDQ--IEQNYQNDPNDQNDQNDQNEKNDQNEKN 447
Query: 254 TEGDGEGNTEGSKQVVLELPTGAL-LKISDIKEP----VSREDIREVLEKVQTD-DQEIV 307
+ G K+ E+ ++ + IS+ + P V EDI+ +L + + I
Sbjct: 448 DQNKKNEQNIGPKKTN-EISYDSININISNNQNPKLSNVFVEDIKRILPISNNNLENSIT 506
Query: 308 FIEFNVGEPTAFVRYKKEN----NAEAVLKALGSKEIVIKDVKVSIEVVTGEEE-QTVLD 362
I+ N+ +P+ + + +N N A K KE I D+ + + + ++D
Sbjct: 507 TIK-NIDDPSNSTKQELQNSDYENMHANKKIENGKESFICDITSNTNITRNSMDIPNIMD 565
Query: 363 RMKIDIFKRRQKLMNEKKS 381
R K + K + +KKS
Sbjct: 566 RKKSEYDKEVDNVSIKKKS 584
>UNIPROTKB|Q8IIG1 [details] [associations]
symbol:PF11_0213 "Uncharacterized protein PF11_0213"
species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] GO:GO:0016021 eggNOG:NOG12793 EMBL:AE014186
RefSeq:XP_001347884.2 GeneID:810760 KEGG:pfa:PF11_0213
EuPathDB:PlasmoDB:PF3D7_1120600 Uniprot:Q8IIG1
Length = 2545
Score = 124 (48.7 bits), Expect = 0.00092, P = 0.00092
Identities = 58/259 (22%), Positives = 117/259 (45%)
Query: 137 KDFFKKNTSEDVKITNIIMRNYQDKLANQKK-FKGSIFVTFDNKENAEKFLNENKDKNLK 195
++F KN +++ NII N + ++K+ FK ++N + NE ++N K
Sbjct: 331 ENFLLKNNEQNIN-NNIINVNQKQSSDHKKESFKIDTKKNDQIEQNYQNGKNEKNEENEK 389
Query: 196 FNENCEH-KNAEKFLNENKDKNLKFNENCEHSLLIKWQQEYHEEKKQ-EVRSKRDKSKKS 253
N ++ KN + NE KN + +N + + +Q + +++ Q + K D+++K+
Sbjct: 390 NGMNEQNGKNEQNGKNEQNGKNEQNEQNDQ--IEQNYQNDPNDQNDQNDQNEKNDQNEKN 447
Query: 254 TEGDGEGNTEGSKQVVLELPTGAL-LKISDIKEP----VSREDIREVLEKVQTD-DQEIV 307
+ G K+ E+ ++ + IS+ + P V EDI+ +L + + I
Sbjct: 448 DQNKKNEQNIGPKKTN-EISYDSININISNNQNPKLSNVFVEDIKRILPISNNNLENSIT 506
Query: 308 FIEFNVGEPTAFVRYKKEN----NAEAVLKALGSKEIVIKDVKVSIEVVTGEEE-QTVLD 362
I+ N+ +P+ + + +N N A K KE I D+ + + + ++D
Sbjct: 507 TIK-NIDDPSNSTKQELQNSDYENMHANKKIENGKESFICDITSNTNITRNSMDIPNIMD 565
Query: 363 RMKIDIFKRRQKLMNEKKS 381
R K + K + +KKS
Sbjct: 566 RKKSEYDKEVDNVSIKKKS 584
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.310 0.130 0.348 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 410 410 0.00079 118 3 11 23 0.50 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 97
No. of states in DFA: 592 (63 KB)
Total size of DFA: 224 KB (2123 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 57.55u 0.09s 57.64t Elapsed: 00:00:35
Total cpu time: 57.58u 0.09s 57.67t Elapsed: 00:00:37
Start: Thu Aug 15 13:15:02 2013 End: Thu Aug 15 13:15:39 2013