RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5142
(410 letters)
>d1zh5a1 a.4.5.46 (A:5-103) Lupus La autoantigen N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 99
Score = 110 bits (276), Expect = 3e-30
Identities = 52/94 (55%), Positives = 70/94 (74%)
Query: 14 GAEAEVSKLENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTE 73
G +++ LE +I QIEYYF D NL RDKFL+ +IK D+GWV L M+KF RL ++TT+
Sbjct: 1 GDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTD 60
Query: 74 AKVIVDALKKSTSKLIEVNEDGTKIRRNPEKELP 107
VIV+AL KS ++L+E++ED TKIRR+P K LP
Sbjct: 61 FNVIVEALSKSKAELMEISEDKTKIRRSPSKPLP 94
>d1s29a_ a.4.5.46 (A:) Lupus La autoantigen N-terminal domain
{Trypanosoma brucei [TaxId: 5691]}
Length = 92
Score = 95.6 bits (238), Expect = 6e-25
Identities = 31/82 (37%), Positives = 60/82 (73%), Gaps = 3/82 (3%)
Query: 20 SKLENQIIEQIEYYFSDINLARDKFLQGEIKKD-DGWVELTTMLKFARLAKMTTEAKVIV 78
S+ + ++ +Q+E+YFSD+N+ RD FL+G++ ++ +G+V L T+L F R+ +TT+ K +V
Sbjct: 8 SENKQKLQKQVEFYFSDVNVQRDIFLKGKMAENAEGFVSLETLLTFKRVNSVTTDVKEVV 67
Query: 79 DALKKSTSKLIEVNEDGTKIRR 100
+A++ S+ + ++EDG +RR
Sbjct: 68 EAIR--PSEKLVLSEDGLMVRR 87
>d2cqka1 a.4.5.46 (A:43-130) La-related protein 4 LARP4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 94.7 bits (236), Expect = 1e-24
Identities = 22/83 (26%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 22 LENQIIEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMTTEAKVIVDAL 81
L+ + +Q+E+ FS NL++D +L D ++ + T+ + K+TT+ +I++ L
Sbjct: 7 LKECLKKQLEFCFSRENLSKDLYLI-SQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVL 65
Query: 82 KKSTSKLIEVNEDGTKIRRNPEK 104
+ S +++V+E G K+R + ++
Sbjct: 66 RS--SPMVQVDEKGEKVRPSHKR 86
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 36.5 bits (84), Expect = 4e-04
Identities = 10/69 (14%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Query: 122 LYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKEN 181
+++ + T + ++++F + + + K+ +G FVTF ++
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGE--------VKECLVMRDPLTKRSRGFGFVTFMDQAG 54
Query: 182 AEKFLNENK 190
+K L +++
Sbjct: 55 VDKVLAQSR 63
Score = 25.3 bits (55), Expect = 4.1
Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 280 ISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEP--TAFVRYKKENNAEAVLKALGS 337
I + ++E +RE + + +V + FV + + + VL
Sbjct: 5 IGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRH 64
Query: 338 K 338
+
Sbjct: 65 E 65
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 36.1 bits (83), Expect = 7e-04
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 8/75 (10%)
Query: 121 SLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKE 180
SLYV + D T + + F I+ + ++ G +V F
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGP--------ILSIRVCRDMITRRSLGYAYVNFQQPA 53
Query: 181 NAEKFLNENKDKNLK 195
+AE+ L+ +K
Sbjct: 54 DAERALDTMNFDVIK 68
Score = 27.6 bits (61), Expect = 0.62
Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 2/76 (2%)
Query: 276 ALLKISDIKEPVSREDIREVLEKVQT--DDQEIVFIEFNVGEPTAFVRYKKENNAEAVLK 333
A L + D+ V+ + E + + A+V +++ +AE L
Sbjct: 1 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 60
Query: 334 ALGSKEIVIKDVKVSI 349
+ I K V++
Sbjct: 61 TMNFDVIKGKPVRIMW 76
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 34.0 bits (77), Expect = 0.004
Identities = 8/74 (10%), Positives = 24/74 (32%), Gaps = 7/74 (9%)
Query: 122 LYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKEN 181
+++ + + + D F I+ + + KG F+ F + +
Sbjct: 1 IFIGNLDPEIDEKLLYDTFS-------AFGVILQTPKIMRDPDTGNSKGYAFINFASFDA 53
Query: 182 AEKFLNENKDKNLK 195
++ + + L
Sbjct: 54 SDAAIEAMNGQYLC 67
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 33.8 bits (77), Expect = 0.004
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 121 SLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKE 180
+LYV +P T D + F K S I++ + + +G FV ++ +E
Sbjct: 8 NLYVTNLPRTITDDQLDTIFGKYGS--------IVQKNILRDKLTGRPRGVAFVRYNKRE 59
Query: 181 NAEKFLNE 188
A++ ++
Sbjct: 60 EAQEAISA 67
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 33.9 bits (77), Expect = 0.005
Identities = 11/70 (15%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 120 QSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNK 179
+ L++ + + T + ++ F++ + + N K+ +G FVT+
Sbjct: 7 RKLFIGGLSFETTDESLRSHFEQW--------GTLTDCVVMRDPNTKRSRGFGFVTYATV 58
Query: 180 ENAEKFLNEN 189
E + +N
Sbjct: 59 EEVDAAMNAR 68
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 32.6 bits (74), Expect = 0.009
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 122 LYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKEN 181
+++ + D T D+KD+F K + D + + + G FV F E+
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGE------VVDCTLKLDPITGRSRGFG--FVLFKESES 53
Query: 182 AEKFLNEN 189
+K +++
Sbjct: 54 VDKVMDQK 61
Score = 25.7 bits (56), Expect = 3.2
Identities = 9/61 (14%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 280 ISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPT--AFVRYKKENNAEAVLKALGS 337
I + +++D+++ K + ++ G FV +K+ + + V+
Sbjct: 4 IGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEH 63
Query: 338 K 338
K
Sbjct: 64 K 64
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 33.1 bits (75), Expect = 0.009
Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 122 LYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKEN 181
LYV +P T +++ F + I+ + +G F+ FD +
Sbjct: 9 LYVSGLPKTMTQKELEQLFSQYGR--------IITSRILVDQVTGVSRGVGFIRFDKRIE 60
Query: 182 AEKFLNENKDKNLK 195
AE+ + +
Sbjct: 61 AEEAIKGLNGQKPS 74
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 32.2 bits (73), Expect = 0.014
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 11/68 (16%)
Query: 122 LYVKYIPVDATLDDIKDFFKK-NTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKE 180
L V + + DI++ F + T + + V F+ K
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGT----------ADVHFERKA 52
Query: 181 NAEKFLNE 188
+A K + +
Sbjct: 53 DALKAMKQ 60
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 32.0 bits (72), Expect = 0.016
Identities = 14/68 (20%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 122 LYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKEN 181
++V + V+ T++D+K +F++ D + + +G FVTF++++
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNR--------HRGFGFVTFESEDI 53
Query: 182 AEKFLNEN 189
EK +
Sbjct: 54 VEKVCEIH 61
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 31.9 bits (72), Expect = 0.020
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 122 LYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKEN 181
L++K + T + +K F K T +N G FV + E
Sbjct: 1 LFIKNLNFSTTEETLKGVFSK-VGAIKSCTISKKKNKAGV----LLSMGFGFVEYKKPEQ 55
Query: 182 AEKFLNE 188
A+K L +
Sbjct: 56 AQKALKQ 62
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 31.9 bits (72), Expect = 0.022
Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 122 LYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKEN 181
++V + D + I+++F + D N+++ F+TF +E
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGE------VESIELPMDNKTNKRRGFC--FITFKEEEP 53
Query: 182 AEKFLNENK 190
+K + +
Sbjct: 54 VKKIMEKKY 62
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 31.9 bits (72), Expect = 0.025
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 121 SLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKE 180
L V +P T D+K++F ++++ +D KG FV F E
Sbjct: 10 DLIVLGLPWKTTEQDLKEYFSTFGE------VLMVQVKKDL--KTGHSKGFGFVRFTEYE 61
Query: 181 NAEKFLNENK 190
K +++
Sbjct: 62 TQVKVMSQRH 71
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 31.8 bits (72), Expect = 0.025
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 7/71 (9%)
Query: 122 LYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKEN 181
+ V+ IP A +I++ F T + + +G FV F K++
Sbjct: 11 ILVRNIPFQANQREIRELFSTFGE---LKTVRLPKKMTGT----GAHRGFGFVDFITKQD 63
Query: 182 AEKFLNENKDK 192
A+K N
Sbjct: 64 AKKAFNALCHS 74
Score = 24.5 bits (53), Expect = 9.4
Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 278 LKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNV---GEPTAFVRYKKENNAEAVLKA 334
+ + +I ++ +IRE+ + + FV + + +A+ A
Sbjct: 11 ILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNA 70
Query: 335 L 335
L
Sbjct: 71 L 71
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 31.6 bits (71), Expect = 0.039
Identities = 8/70 (11%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 120 QSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNK 179
+ L++ + + T + +++++++ + + K+ +G FVTF +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQW--------GKLTDCVVMRDPASKRSRGFGFVTFSSM 72
Query: 180 ENAEKFLNEN 189
+ +
Sbjct: 73 AEVDAAMAAR 82
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 31.5 bits (71), Expect = 0.040
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 121 SLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKE 180
+LYV + T + I + F K+ + DK +K G FV + ++
Sbjct: 9 TLYVGNLSFYTTEEQIYELFSKSGD------IKKIIMGLDK--MKKTACGFCFVEYYSRA 60
Query: 181 NAEKFLNE 188
+AE +
Sbjct: 61 DAENAMRY 68
Score = 24.9 bits (54), Expect = 6.9
Identities = 10/71 (14%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 280 ISDIKEPVSREDIREVLEKVQTDDQEIVFIE--FNVGEPTAFVRYKKENNAEAVLKALGS 337
+ ++ + E I E+ K + I+ ++ FV Y +AE ++ +
Sbjct: 12 VGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYING 71
Query: 338 KEIVIKDVKVS 348
+ + ++
Sbjct: 72 TRLDDRIIRTD 82
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 31.1 bits (70), Expect = 0.045
Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 8/75 (10%)
Query: 121 SLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKE 180
+L V Y+P D T ++ F+ I + G FV F ++
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGP--------INTCRIMRDYKTGYSYGYAFVDFTSEM 55
Query: 181 NAEKFLNENKDKNLK 195
++++ + ++
Sbjct: 56 DSQRAIKVLNGITVR 70
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 31.5 bits (71), Expect = 0.045
Identities = 9/69 (13%), Positives = 22/69 (31%), Gaps = 8/69 (11%)
Query: 121 SLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKE 180
+++ + D++DFF + N ++ KG +V F +
Sbjct: 20 TVFCMQLAARIRPRDLEDFFSAV--------GKVRDVRIISDRNSRRSKGIAYVEFCEIQ 71
Query: 181 NAEKFLNEN 189
+ +
Sbjct: 72 SVPLAIGLT 80
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 31.5 bits (71), Expect = 0.052
Identities = 12/101 (11%), Positives = 31/101 (30%), Gaps = 16/101 (15%)
Query: 122 LYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKEN 181
+ V+ + TLD + F K + V + + + + + +
Sbjct: 10 IIVENLFYPVTLDVLHQIFSKFGT--VLKIITFTK----------NNQFQALLQYADPVS 57
Query: 182 AEKFLNENKDKNLKFNENCEHKNAEKFLNENKDKNLKFNEN 222
A+ +N+ ++ N+K+N +
Sbjct: 58 AQHAKLSLDGQNI----YNACCTLRIDFSKLTSLNVKYNND 94
Score = 30.0 bits (67), Expect = 0.14
Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 280 ISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKE 339
+ ++ PV+ + + ++ K T + I F + N A ++Y +A+ +L +
Sbjct: 12 VENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQF--QALLQYADPVSAQHAKLSLDGQN 69
Query: 340 IVIKDVKVSIE 350
I + I+
Sbjct: 70 IYNACCTLRID 80
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 30.8 bits (69), Expect = 0.062
Identities = 9/77 (11%), Positives = 20/77 (25%), Gaps = 8/77 (10%)
Query: 119 AQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDN 178
A L++ +P D +K+ +D K F + +
Sbjct: 1 AHKLFIGGLPNYLNDDQVKELLTSFGP------LKAFNLVKDSATGLSKGYA--FCEYVD 52
Query: 179 KENAEKFLNENKDKNLK 195
++ + L
Sbjct: 53 INVTDQAIAGLNGMQLG 69
Score = 26.1 bits (57), Expect = 2.2
Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 2/71 (2%)
Query: 280 ISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEP--TAFVRYKKENNAEAVLKALGS 337
I + ++ + ++E+L + + G AF Y N + + L
Sbjct: 6 IGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG 65
Query: 338 KEIVIKDVKVS 348
++ K + V
Sbjct: 66 MQLGDKKLLVQ 76
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 30.8 bits (69), Expect = 0.074
Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 6/76 (7%)
Query: 122 LYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKEN 181
L++ IP ++I + K T + + + K +G FV +++
Sbjct: 4 LFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKM------KNRGFAFVEYESHRA 57
Query: 182 AEKFLNENKDKNLKFN 197
A + ++
Sbjct: 58 AAMARRKLMPGRIQLW 73
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 30.5 bits (68), Expect = 0.093
Identities = 8/70 (11%), Positives = 15/70 (21%), Gaps = 11/70 (15%)
Query: 120 QSLYVKYIPVDA-TLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDN 178
L D + + + F+ K T + + F N
Sbjct: 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS----------FKRVRINFSN 55
Query: 179 KENAEKFLNE 188
+A
Sbjct: 56 PLSAADARLR 65
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 30.4 bits (68), Expect = 0.11
Identities = 11/75 (14%), Positives = 28/75 (37%), Gaps = 8/75 (10%)
Query: 121 SLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKE 180
++YV + + + + F + ++ + K + +G FV F ++E
Sbjct: 11 TVYVGGLDEKVSEPLLWELFLQAGP--------VVNTHMPKDRVTGQHQGYGFVEFLSEE 62
Query: 181 NAEKFLNENKDKNLK 195
+A+ + L
Sbjct: 63 DADYAIKIMDMIKLY 77
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 29.6 bits (66), Expect = 0.14
Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 8/74 (10%)
Query: 122 LYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKEN 181
+ V+ +P ++D+I DFF + + N + G V F++++
Sbjct: 12 IKVQNMPFTVSIDEILDFFYGYQVIPGSV--CLKYN------EKGMPTGEAMVAFESRDE 63
Query: 182 AEKFLNENKDKNLK 195
A + + D+ +
Sbjct: 64 ATAAVIDLNDRPIG 77
Score = 26.9 bits (59), Expect = 1.2
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 273 PTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPT--AFVRYKKENNAEA 330
P ++K+ ++ VS ++I + Q + G PT A V ++ + A A
Sbjct: 7 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATA 66
Query: 331 VLKALGSKEIVIKDVKVSI 349
+ L + I + VK+ +
Sbjct: 67 AVIDLNDRPIGSRKVKLVL 85
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 29.7 bits (66), Expect = 0.18
Identities = 10/67 (14%), Positives = 24/67 (35%), Gaps = 8/67 (11%)
Query: 122 LYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKEN 181
L++ ++P + D+ F + ++ K FV++DN +
Sbjct: 21 LFIYHLPQEFGDQDLLQMFMPFGN--------VVSAKVFIDKQTNLSKCFGFVSYDNPVS 72
Query: 182 AEKFLNE 188
A+ +
Sbjct: 73 AQAAIQS 79
Score = 28.5 bits (63), Expect = 0.48
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 271 ELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPT--AFVRYKKENNA 328
E P GA L I + + +D+ ++ VFI+ FV Y +A
Sbjct: 14 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSA 73
Query: 329 EAVLKALGSKEIVIKDVKVSI 349
+A ++++ +I +K +KV +
Sbjct: 74 QAAIQSMNGFQIGMKRLKVQL 94
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 29.8 bits (66), Expect = 0.18
Identities = 13/102 (12%), Positives = 33/102 (32%), Gaps = 7/102 (6%)
Query: 258 GEGNTEGSKQVVLELPTGALLKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPT 317
G + GS ++ ++ + + E V D+ E I ++ +
Sbjct: 1 GSSGSSGSHH---KVSVSPVVHVRGLCESVVEADLVEA----LEKFGTICYVMMMPFKRQ 53
Query: 318 AFVRYKKENNAEAVLKALGSKEIVIKDVKVSIEVVTGEEEQT 359
A V ++ ++A+ + + I + T +
Sbjct: 54 ALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRITR 95
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 29.3 bits (65), Expect = 0.22
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 287 VSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIV 341
VSR + VLEK + + +P +F RY+ ++ L KE+V
Sbjct: 32 VSRNQLLPVLEKCG----LVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVV 82
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 28.9 bits (64), Expect = 0.28
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 121 SLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKE 180
++ V + D D+++ F+ S I R Y K + KG F++F +E
Sbjct: 10 TIRVTNLSEDTRETDLQELFRPFGS--------ISRIYLAKDKTTGQSKGFAFISFHRRE 61
Query: 181 NAEKFLNE 188
+A + +
Sbjct: 62 DAARAIAG 69
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 28.6 bits (63), Expect = 0.36
Identities = 9/74 (12%), Positives = 27/74 (36%), Gaps = 8/74 (10%)
Query: 122 LYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKEN 181
L++ P T +I+D + N++ + + + ++ +KE+
Sbjct: 4 LWMTNFPPSYTQRNIRDLLQDI--------NVVALSIRLPSLRFNTSRRFAYIDVTSKED 55
Query: 182 AEKFLNENKDKNLK 195
A + + ++
Sbjct: 56 ARYCVEKLNGLKIE 69
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 28.5 bits (63), Expect = 0.40
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 8/74 (10%)
Query: 122 LYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKEN 181
L+V+ + ++ +D++ F + + + KK KG FVTF E+
Sbjct: 11 LFVRNLSYTSSEEDLEKLFSAY--------GPLSELHYPIDSLTKKPKGFAFVTFMFPEH 62
Query: 182 AEKFLNENKDKNLK 195
A K E + +
Sbjct: 63 AVKAYAEVDGQVFQ 76
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 28.8 bits (64), Expect = 0.51
Identities = 17/102 (16%), Positives = 43/102 (42%), Gaps = 16/102 (15%)
Query: 122 LYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKEN 181
LY++ +P T +++ D F K Q ++ N + +G+ +V +++ +
Sbjct: 10 LYIRNLPYKITAEEMYDIFGK-----------YGPIRQIRVGNTPETRGTAYVVYEDIFD 58
Query: 182 AEKFLN-----ENKDKNLKFNENCEHKNAEKFLNENKDKNLK 218
A+ + ++ L ++ +K + K++ LK
Sbjct: 59 AKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLK 100
Score = 28.4 bits (63), Expect = 0.68
Identities = 13/97 (13%), Positives = 37/97 (38%), Gaps = 1/97 (1%)
Query: 278 LKISDIKEPVSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGS 337
L I ++ ++ E++ ++ K ++I TA+V Y+ +A+ L
Sbjct: 10 LYIRNLPYKITAEEMYDIFGKYG-PIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSG 68
Query: 338 KEIVIKDVKVSIEVVTGEEEQTVLDRMKIDIFKRRQK 374
+ + + V ++ + + + ++K
Sbjct: 69 FNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEK 105
>d1bm8a_ d.34.1.1 (A:) DNA-binding domain of Mlu1-box binding
protein MBP1 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 99
Score = 28.2 bits (63), Expect = 0.52
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 8/45 (17%)
Query: 27 IEQIEYYFSDINLARDKFLQGEIKKDDGWVELTTMLKFARLAKMT 71
++ E+ S ++ + K D WV T +LK A AK
Sbjct: 10 VDVYEFIHSTGSIMKRK--------KDDWVNATHILKAANFAKAK 46
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 28.1 bits (62), Expect = 0.57
Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 10/74 (13%)
Query: 122 LYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKEN 181
L+V IP D++ F + + + N++ KG FVTF+N +
Sbjct: 14 LHVSNIPFRFRDPDLRQMFGQ----------FGKILDVEIIFNERGSKGFGFVTFENSAD 63
Query: 182 AEKFLNENKDKNLK 195
A++ + ++
Sbjct: 64 ADRAREKLHGTVVE 77
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 29.2 bits (64), Expect = 0.62
Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 122 LYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKEN 181
L++ + + T + ++ F++ +T+ ++ N K+ +G FVT+ E
Sbjct: 9 LFIGGLSFETTDESLRSHFEQWG----TLTDCVVMRDP----NTKRSRGFGFVTYATVEE 60
Query: 182 AEKFLNENKDKNLKFNENC 200
+ +N K
Sbjct: 61 VDAAMNARPHKVDGRVVEP 79
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 28.1 bits (62), Expect = 0.64
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 15/72 (20%)
Query: 121 SLYVKYIPVDATLDDIKDFFKKN-TSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNK 179
++V D T D++++FF + DV I FVTF +
Sbjct: 7 GVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFR--------------AFAFVTFADD 52
Query: 180 ENAEKFLNENKD 191
+ A+ E+
Sbjct: 53 QIAQSLCGEDLI 64
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 27.7 bits (61), Expect = 0.76
Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 13/77 (16%)
Query: 119 AQSLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDN 178
A++L K + + T D++K+ F+ ++ K KG ++ F +
Sbjct: 16 ARTLLAKNLSFNITEDELKEVFEDA-------------LEIRLVSQDGKSKGIAYIEFKS 62
Query: 179 KENAEKFLNENKDKNLK 195
+ +AEK L E + +
Sbjct: 63 EADAEKNLEEKQGAEID 79
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 28.2 bits (62), Expect = 0.78
Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 122 LYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKEN 181
++ +P D T + IK+FF+ NI + +N ++ KG + F++ ++
Sbjct: 18 AFLGNLPYDVTEESIKEFFRGL--------NISAVRLPREPSNPERLKGFGYAEFEDLDS 69
Query: 182 AEKFLNENK 190
L+ N+
Sbjct: 70 LLSALSLNE 78
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum
pernix [TaxId: 56636]}
Length = 132
Score = 28.4 bits (63), Expect = 0.87
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 61 MLKFARLAKMTTEAKVIVDALKKSTSKLI 89
+L+F R+ + + + A+ + KL+
Sbjct: 102 LLRFLRILLIISRGSKFLSAIADAADKLV 130
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 27.4 bits (60), Expect = 0.91
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 8/75 (10%)
Query: 121 SLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKE 180
L V + + T D+++ F K ++ + +G FV F+N +
Sbjct: 11 CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRR--------SRGFAFVYFENVD 62
Query: 181 NAEKFLNENKDKNLK 195
+A++ L
Sbjct: 63 DAKEAKERANGMELD 77
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 27.3 bits (60), Expect = 1.0
Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 12/69 (17%)
Query: 121 SLYVKYIPVDATLDDIKDFFKKN-TSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNK 179
++++K + + D F K+ + FV F+ +
Sbjct: 10 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY-----------GFVHFETQ 58
Query: 180 ENAEKFLNE 188
E AE+ + +
Sbjct: 59 EAAERAIEK 67
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 27.4 bits (60), Expect = 1.0
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 8/75 (10%)
Query: 121 SLYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKE 180
+L V Y+P + T ++ + F + + G FV + + +
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKIT--------GQSLGYGFVNYIDPK 55
Query: 181 NAEKFLNENKDKNLK 195
+AEK +N L+
Sbjct: 56 DAEKAINTLNGLRLQ 70
>g1mtp.1 e.1.1.1 (A:,B:) Thermopin {Thermobifida fusca [TaxId:
2021]}
Length = 355
Score = 28.3 bits (62), Expect = 1.6
Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 9/92 (9%)
Query: 10 NGNSGAEAEVSKLENQIIEQIEYYFSDINLARDKFLQG----EIKKDDGWVELTTMLKFA 65
G + A + L + + ++ L R + Q E+ + G L T A
Sbjct: 223 PGTNAAAVPTAPLLTALHRRSASTSVELALPRFELTQPHQLVEVLAEAGVRTLFT--ASA 280
Query: 66 RLAKMTTEAKVIVDALKKSTSKLIEVNEDGTK 97
L+ ++T + + ++ + V+E G +
Sbjct: 281 DLSGISTVPLYVDTVIHQAR---LRVDERGAE 309
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 26.5 bits (58), Expect = 1.7
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 14/74 (18%)
Query: 122 LYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKEN 181
L+V +P D T ++++ F + + K KG F+ + +
Sbjct: 11 LFVGNLPPDITEEEMRKLF--------------EKYGKAGEVFIHKDKGFGFIRLETRTL 56
Query: 182 AEKFLNENKDKNLK 195
AE E + L+
Sbjct: 57 AEIAKVELDNMPLR 70
>d2hhma_ e.7.1.1 (A:) Inositol monophosphatase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 272
Score = 28.1 bits (61), Expect = 1.7
Identities = 8/88 (9%), Positives = 26/88 (29%), Gaps = 1/88 (1%)
Query: 152 NIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNENKDKNLKFNENCEHKNAEKFLNE 211
++ ++++ K VT +++ + ++ K+K + E A +
Sbjct: 17 EVVCEAIKNEMNVMLKSSPVDLVTATDQKVEKMLISSIKEKYPSHSFIGEESVAAGEKSI 76
Query: 212 NKDKNL-KFNENCEHSLLIKWQQEYHEE 238
D + + +
Sbjct: 77 LTDNPTWIIDPIDGTTNFVHRFPFVAVS 104
>d1qhka_ d.100.1.2 (A:) N-terminal domain of RNase HI {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 25.3 bits (56), Expect = 2.1
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 154 IMRNYQDKLANQKKFKGSIFVTFDNKENAEKFL 186
I + + + G+I+ F++ E A+ FL
Sbjct: 14 IYNTWNECKNQVDGYGGAIYKKFNSYEQAKSFL 46
>d1d02a_ c.52.1.8 (A:) Restriction endonuclease MunI {Mycoplasma,
unidentified species [TaxId: 2093]}
Length = 197
Score = 27.6 bits (61), Expect = 2.1
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 34 FSDINLARDKFLQGEIKKDDGWVE 57
F+ N K L GEIK+ DGWVE
Sbjct: 79 FAIENTETHKILFGEIKRQDGWVE 102
>d1ooya1 c.124.1.3 (A:261-481) Succinate:CoA transferase, C-terminal
domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 221
Score = 27.4 bits (60), Expect = 2.6
Identities = 9/62 (14%), Positives = 23/62 (37%)
Query: 236 HEEKKQEVRSKRDKSKKSTEGDGEGNTEGSKQVVLELPTGALLKISDIKEPVSREDIREV 295
K +K G N +++ V ++ L + ++ E ++ +DI++
Sbjct: 143 EHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDRKKGLTLIELWEGLTVDDIKKS 202
Query: 296 LE 297
Sbjct: 203 TG 204
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 25.9 bits (56), Expect = 3.7
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 122 LYVKYIPVDATLDDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKEN 181
+ ++ +P + ++I FF I+ + Q + G FV F ++E
Sbjct: 18 VRLRGLPFGCSKEEIVQFFSGL--------EIVPNGMTLPVDFQGRSTGEAFVQFASQEI 69
Query: 182 AEKFLNENKDK 192
AEK L ++K++
Sbjct: 70 AEKALKKHKER 80
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 26.0 bits (57), Expect = 3.9
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 287 VSREDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVK 346
V + D+ + K +IV + G AFV+Y E NA A + + I + +
Sbjct: 28 VKKSDVEAIFSKYG----KIVGCSVHKG--FAFVQYVNERNARAAVAGEDGRMIAGQVLD 81
Query: 347 VSI 349
+++
Sbjct: 82 INL 84
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 25.7 bits (56), Expect = 4.2
Identities = 8/55 (14%), Positives = 23/55 (41%), Gaps = 8/55 (14%)
Query: 134 DDIKDFFKKNTSEDVKITNIIMRNYQDKLANQKKFKGSIFVTFDNKENAEKFLNE 188
++I++ + S+ +I +++ + G V+F + E A+ +
Sbjct: 30 NEIREDLRVECSKFGQIRKLLL--------FDRHPDGVASVSFRDPEEADYCIQT 76
Score = 24.5 bits (53), Expect = 10.0
Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 289 REDIREVLEKVQTDDQEIVFIEFNVGEPTAFVRYKKENNAEAVLKALGSKEIVIKDVKVS 348
RED+R K + ++F G A V ++ A+ ++ L + + +
Sbjct: 33 REDLRVECSKFGQIRKLLLFDRHPDG--VASVSFRDPEEADYCIQTLDGRWFGGRQITAQ 90
Query: 349 I 349
Sbjct: 91 A 91
>d1imva_ e.1.1.1 (A:) Pigment epithelium-derived factor, PEDF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 27.1 bits (59), Expect = 4.2
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 58 LTTMLKFARLAKMTTEAKVIVDALKKSTSKLIEVNEDGTK 97
L ++ +K+T + + ++ E NEDG
Sbjct: 299 LQSLFDSPDFSKITGKPIKLTQVEHRAG---FEWNEDGAG 335
>d2hpua1 d.357.1.1 (A:35-160) NosL {Achromobacter cycloclastes
[TaxId: 223]}
Length = 126
Score = 26.0 bits (57), Expect = 4.7
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 174 VTFDNKENAEKFLNENKDKNLKFNE 198
V F +++ A F+ + L +
Sbjct: 81 VPFSSRDEAAAFVLAEGGQVLALAD 105
>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit
fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 122
Score = 25.8 bits (56), Expect = 4.8
Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 4/85 (4%)
Query: 61 MLKFARLAKMTTEA-KVIVDALKKSTSKLIEVNEDGTKIRRNPEKELPTFDIDFVKDLIA 119
F +K +A K ++ A N+ + +K P+ I K
Sbjct: 36 HEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDKNFPS--IFLFKGNAD 93
Query: 120 QSLYVKYIPVDATLDDIKDFFKKNT 144
+ + + D TLD++K F NT
Sbjct: 94 EYVQLPSHV-DVTLDNLKAFVSANT 117
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM
domains {Thermus thermophilus [TaxId: 274]}
Length = 227
Score = 26.6 bits (57), Expect = 5.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 332 LKALGSKEIVIKDVKVSIEVVTGEE 356
+A G+ E+V +DVKV +E GEE
Sbjct: 203 QRASGTYELVFEDVKVPVENRLGEE 227
>d1bxta1 b.40.2.2 (A:1-119) Streptococcal superantigen SSA
{Streptococcus pyogenes [TaxId: 1314]}
Length = 119
Score = 25.6 bits (56), Expect = 5.9
Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 12/71 (16%)
Query: 129 VDATLDDIKDFFKKN--TSEDVKITN------IIMRNYQDKLANQKKFKGSIFVTFDNKE 180
+ +++ + + +V+ T +I KL N K F++K+
Sbjct: 17 FTGVMGNLRCLYDNHFVEGTNVRSTGQLLQHDLIFPIKDLKLKNYDSVK----TEFNSKD 72
Query: 181 NAEKFLNENKD 191
A K+ N++ D
Sbjct: 73 LATKYKNKDVD 83
>d1vi7a1 d.14.1.11 (A:3-137) Hypothetical protein YigZ, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 135
Score = 26.0 bits (57), Expect = 6.0
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 169 KGSIFVTF----DNKENAEKFLNENKDKNLKFNENC 200
K S F+T D E A+ F+ + ++ +C
Sbjct: 19 KKSRFITMLAHTDGVEAAKAFVESVRAEHPDARHHC 54
>d2aq2b1 b.40.2.2 (B:2-119) Streptococcal superantigen SSA
{Streptococcus pyogenes [TaxId: 1314]}
Length = 118
Score = 25.2 bits (55), Expect = 9.1
Identities = 11/68 (16%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Query: 129 VDATLDDIKDFFKKN--TSEDVKITNIIMRN---YQDKLANQKKFKGSIFVTFDNKENAE 183
T+ ++K + + ++ VK + + + Y K + + N++ A+
Sbjct: 16 FTGTMGNMKYLYDDHYVSATKVKSVDKFLAHDLIYNISDKKLKNYD-KVKTELLNEDLAK 74
Query: 184 KFLNENKD 191
K+ +E D
Sbjct: 75 KYKDEVVD 82
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.130 0.349
Gapped
Lambda K H
0.267 0.0480 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,433,529
Number of extensions: 70896
Number of successful extensions: 380
Number of sequences better than 10.0: 1
Number of HSP's gapped: 360
Number of HSP's successfully gapped: 117
Length of query: 410
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 323
Effective length of database: 1,213,086
Effective search space: 391826778
Effective search space used: 391826778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 54 (25.2 bits)