BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5147
(158 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BGQ2|CSRN2_MOUSE Cysteine/serine-rich nuclear protein 2 OS=Mus musculus GN=Csrnp2
PE=2 SV=1
Length = 534
Score = 148 bits (374), Expect = 1e-35, Method: Composition-based stats.
Identities = 65/107 (60%), Positives = 84/107 (78%)
Query: 41 LRPVKIRQRRAMLRAAGVDKIDPTEKNQCKQIRISREFCGCACEGYCDPEICACALAGIK 100
L+P+ ++RRA+LRA+GV +ID EK + + IR+SRE CGC C YCDPE CAC+ AGIK
Sbjct: 175 LQPLPTKRRRALLRASGVHRIDAEEKQELRAIRLSREECGCDCRLYCDPEACACSQAGIK 234
Query: 101 CQVDRQNFPCGCSRDCCANPKGRIEFNPVRVHSHYIQTIMRMKAQKK 147
CQVDR +FPCGCSRD C N GRIEFNP+RV +HY+ TIM+++ + K
Sbjct: 235 CQVDRMSFPCGCSRDGCGNMAGRIEFNPIRVRTHYLHTIMKLELESK 281
>sp|Q9H175|CSRN2_HUMAN Cysteine/serine-rich nuclear protein 2 OS=Homo sapiens GN=CSRNP2
PE=1 SV=1
Length = 543
Score = 148 bits (374), Expect = 1e-35, Method: Composition-based stats.
Identities = 65/107 (60%), Positives = 84/107 (78%)
Query: 41 LRPVKIRQRRAMLRAAGVDKIDPTEKNQCKQIRISREFCGCACEGYCDPEICACALAGIK 100
L+P+ ++RRA+LRA+GV +ID EK + + IR+SRE CGC C YCDPE CAC+ AGIK
Sbjct: 175 LQPLPTKRRRALLRASGVHRIDAEEKQELRAIRLSREECGCDCRLYCDPEACACSQAGIK 234
Query: 101 CQVDRQNFPCGCSRDCCANPKGRIEFNPVRVHSHYIQTIMRMKAQKK 147
CQVDR +FPCGCSRD C N GRIEFNP+RV +HY+ TIM+++ + K
Sbjct: 235 CQVDRMSFPCGCSRDGCGNMAGRIEFNPIRVRTHYLHTIMKLELESK 281
>sp|Q8WYN3|CSRN3_HUMAN Cysteine/serine-rich nuclear protein 3 OS=Homo sapiens GN=CSRNP3
PE=2 SV=1
Length = 585
Score = 145 bits (366), Expect = 1e-34, Method: Composition-based stats.
Identities = 60/112 (53%), Positives = 88/112 (78%)
Query: 41 LRPVKIRQRRAMLRAAGVDKIDPTEKNQCKQIRISREFCGCACEGYCDPEICACALAGIK 100
L+P+ ++RRA+LRA+GV KID EK++ + IR+SRE CGC C +CDP+ C C+LAGIK
Sbjct: 174 LQPLPTKKRRALLRASGVKKIDVEEKHELRAIRLSREDCGCDCRVFCDPDTCTCSLAGIK 233
Query: 101 CQVDRQNFPCGCSRDCCANPKGRIEFNPVRVHSHYIQTIMRMKAQKKDDDDM 152
CQVDR +FPCGC+++ C+N GRIEFNP+RV +H++ TIM+++ +K + +
Sbjct: 234 CQVDRMSFPCGCTKEGCSNTAGRIEFNPIRVRTHFLHTIMKLELEKNREQQI 285
>sp|P59055|CSRN3_MOUSE Cysteine/serine-rich nuclear protein 3 OS=Mus musculus GN=Csrnp3
PE=1 SV=2
Length = 597
Score = 145 bits (366), Expect = 1e-34, Method: Composition-based stats.
Identities = 61/106 (57%), Positives = 86/106 (81%)
Query: 41 LRPVKIRQRRAMLRAAGVDKIDPTEKNQCKQIRISREFCGCACEGYCDPEICACALAGIK 100
L+P+ ++RRA+LRA+GV KID EK++ + IR+SRE CGC C +CDPE C C+LAGIK
Sbjct: 186 LQPLPTKKRRALLRASGVKKIDVDEKHELRAIRLSREDCGCDCRVFCDPETCTCSLAGIK 245
Query: 101 CQVDRQNFPCGCSRDCCANPKGRIEFNPVRVHSHYIQTIMRMKAQK 146
CQVDR +FPCGC+++ C+N GRIEFNP+RV +H++ TIM+++ +K
Sbjct: 246 CQVDRMSFPCGCTKEGCSNTAGRIEFNPIRVRTHFLHTIMKLELEK 291
>sp|P59054|CSRN1_MOUSE Cysteine/serine-rich nuclear protein 1 OS=Mus musculus GN=Csrnp1
PE=2 SV=1
Length = 583
Score = 135 bits (341), Expect = 8e-32, Method: Composition-based stats.
Identities = 59/106 (55%), Positives = 80/106 (75%)
Query: 41 LRPVKIRQRRAMLRAAGVDKIDPTEKNQCKQIRISREFCGCACEGYCDPEICACALAGIK 100
L+P RQRRA+LRA+GV +ID EK + + +R SRE CGC C+G CDPE C+C+LAGIK
Sbjct: 199 LQPHPPRQRRALLRASGVRRIDREEKRELQVLRQSREDCGCHCDGVCDPETCSCSLAGIK 258
Query: 101 CQVDRQNFPCGCSRDCCANPKGRIEFNPVRVHSHYIQTIMRMKAQK 146
CQ+D +FPCGC R+ C NP GR+EFN RV +H+I T+ R++ ++
Sbjct: 259 CQMDHTSFPCGCCREGCENPNGRVEFNQTRVQTHFIHTLTRLQMEQ 304
>sp|Q96S65|CSRN1_HUMAN Cysteine/serine-rich nuclear protein 1 OS=Homo sapiens GN=CSRNP1
PE=2 SV=2
Length = 589
Score = 112 bits (281), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 79/107 (73%)
Query: 41 LRPVKIRQRRAMLRAAGVDKIDPTEKNQCKQIRISREFCGCACEGYCDPEICACALAGIK 100
L+P R+RRA+LRA+GV +ID EK + + +R SRE CGC C+ CDPE C+C+LAGIK
Sbjct: 199 LQPYPARRRRALLRASGVRRIDREEKRELQALRQSREDCGCHCDRICDPETCSCSLAGIK 258
Query: 101 CQVDRQNFPCGCSRDCCANPKGRIEFNPVRVHSHYIQTIMRMKAQKK 147
CQ+D FPCGC R+ C NP GR+EFN RV +H+I T+ R++ +++
Sbjct: 259 CQMDHTAFPCGCCREGCENPMGRVEFNQARVQTHFIHTLTRLQLEQE 305
>sp|Q5R638|CSRN1_PONAB Cysteine/serine-rich nuclear protein 1 OS=Pongo abelii GN=CSRNP1
PE=2 SV=1
Length = 593
Score = 112 bits (281), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 79/107 (73%)
Query: 41 LRPVKIRQRRAMLRAAGVDKIDPTEKNQCKQIRISREFCGCACEGYCDPEICACALAGIK 100
L+P R+RRA+LRA+GV +ID EK + + +R SRE CGC C+ CDPE C+C+LAGIK
Sbjct: 203 LQPYPARRRRALLRASGVRRIDREEKRELQALRQSREDCGCHCDRICDPETCSCSLAGIK 262
Query: 101 CQVDRQNFPCGCSRDCCANPKGRIEFNPVRVHSHYIQTIMRMKAQKK 147
CQ+D FPCGC R+ C NP GR+EFN RV +H+I T+ R++ +++
Sbjct: 263 CQMDHTAFPCGCCREGCENPMGRVEFNQARVQTHFIHTLTRLQLEQE 309
>sp|O95239|KIF4A_HUMAN Chromosome-associated kinesin KIF4A OS=Homo sapiens GN=KIF4A PE=1
SV=3
Length = 1232
Score = 33.5 bits (75), Expect = 0.48, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 12/52 (23%)
Query: 70 KQIRISRE-FCGCACEGYCDPEICACALAGIKCQVDRQNFPCGCSRDCCANP 120
K +++SR+ GC+C+G+C + C C +Q CG DCC +P
Sbjct: 1074 KLVKVSRKNIQGCSCKGWCGNKQCGCR---------KQKSDCGV--DCCCDP 1114
>sp|Q2VIQ3|KIF4B_HUMAN Chromosome-associated kinesin KIF4B OS=Homo sapiens GN=KIF4B PE=2
SV=2
Length = 1234
Score = 33.5 bits (75), Expect = 0.52, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 70 KQIRISRE-FCGCACEGYCDPEICACALAGIKCQVDRQNFPCGCSRDCCAN 119
K +++SR+ GC+C+G+C + C C C VD C C C N
Sbjct: 1076 KLVKVSRKNIQGCSCKGWCGNKQCGCRKQKSDCGVD-----CSCDPTKCRN 1121
>sp|P33174|KIF4_MOUSE Chromosome-associated kinesin KIF4 OS=Mus musculus GN=Kif4 PE=2 SV=3
Length = 1231
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 70 KQIRISRE-FCGCACEGYCDPEICACALAGIKCQVDRQNFPCGCSRDCCAN 119
K +++S++ GC+C+G+C + C C C N C C C N
Sbjct: 1074 KLVKVSKKSIQGCSCKGWCGNKQCGCRKQKSDC-----NVSCSCDPTKCRN 1119
>sp|A0Q0Y1|RIMM_CLONN Ribosome maturation factor RimM OS=Clostridium novyi (strain NT)
GN=rimM PE=3 SV=1
Length = 162
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 36 GVAVDLRPVKIRQRRAMLRAAGVDKIDPTEKNQCKQIRISREFCGCACEG-YCDPEICAC 94
G V++ K + + +L+ G+D I+ ++ + K I++SRE E Y + +I C
Sbjct: 42 GNIVEIEGCKFQPGKVILKIKGIDSIEDAQRLKNKYIKVSRENAATLDEDCYYEADIVGC 101
Query: 95 AL 96
+
Sbjct: 102 TV 103
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.138 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,734,705
Number of Sequences: 539616
Number of extensions: 2297331
Number of successful extensions: 5746
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 5687
Number of HSP's gapped (non-prelim): 81
length of query: 158
length of database: 191,569,459
effective HSP length: 108
effective length of query: 50
effective length of database: 133,290,931
effective search space: 6664546550
effective search space used: 6664546550
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)