Query psy5147
Match_columns 158
No_of_seqs 54 out of 56
Neff 2.9
Searched_HMMs 29240
Date Fri Aug 16 18:30:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5147.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5147hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hna_A Histone-lysine N-methyl 84.3 0.45 1.5E-05 39.4 2.2 43 78-121 80-140 (287)
2 3bo5_A Histone-lysine N-methyl 82.6 1.1 3.7E-05 37.0 3.8 24 78-101 59-83 (290)
3 1mvh_A Cryptic LOCI regulator 51.2 9.5 0.00032 31.5 2.9 20 78-97 66-90 (299)
4 1ml9_A Histone H3 methyltransf 50.8 6.4 0.00022 32.3 1.8 20 78-97 47-68 (302)
5 1ans_A Neurotoxin III; NMR {An 32.8 20 0.00069 21.1 1.5 21 92-114 4-24 (27)
6 2hue_C Histone H4; mini beta s 30.4 67 0.0023 21.8 4.1 29 44-72 11-39 (84)
7 1ews_A RK-1 defensin, alpha-de 28.9 9.4 0.00032 23.1 -0.4 11 80-90 2-12 (32)
8 1id3_B Histone H4; nucleosome 28.8 63 0.0022 23.0 3.9 29 44-72 29-57 (102)
9 2lua_A Protein MALE-specific l 28.2 34 0.0012 22.8 2.2 28 86-121 20-47 (52)
10 2kgu_A Purotoxin-1; P2X recept 27.1 33 0.0011 21.1 1.8 21 94-115 3-26 (35)
11 1ku5_A HPHA, archaeal histon; 25.5 1.1E+02 0.0036 19.8 4.3 29 44-72 7-35 (70)
12 1taf_A TFIID TBP associated fa 24.8 64 0.0022 21.8 3.1 24 49-72 7-30 (68)
13 1kig_L Factor XA; glycoprotein 23.6 30 0.001 21.2 1.2 20 91-111 20-45 (51)
14 3ix0_A Beta-microseminoprotein 21.3 15 0.00052 26.4 -0.6 14 90-103 38-51 (94)
15 3lhp_S 4E10_D0_1ISEA_004_N (T9 20.3 45 0.0015 25.4 1.8 30 43-74 41-71 (123)
No 1
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*
Probab=84.32 E-value=0.45 Score=39.36 Aligned_cols=43 Identities=28% Similarity=0.766 Sum_probs=30.6
Q ss_pred cccCCCCCcccCCCcccccCCcccccCCC------------------CCCcccccCccCCCC
Q psy5147 78 FCGCACEGYCDPEICACALAGIKCQVDRQ------------------NFPCGCSRDCCANPK 121 (158)
Q Consensus 78 ~CGC~C~g~C~PeTC~Cs~aGIkCQVDr~------------------~FPCgCt~~~C~Np~ 121 (158)
..||+|.+.|.+..|.|......+..|.. +--|+|. ..|.|..
T Consensus 80 ~~gC~C~~~C~~~~C~C~~~~~~~~y~~~g~l~~~~~~~~~~~i~EC~~~C~C~-~~C~Nr~ 140 (287)
T 3hna_A 80 LQYCVCIDDCSSSNCMCGQLSMRCWYDKDGRLLPEFNMAEPPLIFECNHACSCW-RNCRNRV 140 (287)
T ss_dssp CCCCCCSSSSCSTTCHHHHHTSSCCBCTTSCBCTTCCSSSCCCEECCCTTSSSC-TTCSSCS
T ss_pred CCCCcCcCCCCCCCCcCcccCcccccCCCCcccccccccCCceEEecCCCCCCC-CCCCCcc
Confidence 46999999999999999865444544421 1248885 5898874
No 2
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}
Probab=82.63 E-value=1.1 Score=37.05 Aligned_cols=24 Identities=38% Similarity=0.894 Sum_probs=20.3
Q ss_pred cccCCCC-CcccCCCcccccCCccc
Q psy5147 78 FCGCACE-GYCDPEICACALAGIKC 101 (158)
Q Consensus 78 ~CGC~C~-g~C~PeTC~Cs~aGIkC 101 (158)
.-||+|. +.|+|.+|+|...+..+
T Consensus 59 ~~gC~C~~~~C~~~~C~C~~~~~~y 83 (290)
T 3bo5_A 59 FPGCICVKTPCLPGTCSCLRHGENY 83 (290)
T ss_dssp CCCCCCCSSCCCTTTCGGGTTSCSB
T ss_pred CCCCCCCCCCcCCCCCcchhhcCcc
Confidence 4699998 59999999999987644
No 3
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A
Probab=51.25 E-value=9.5 Score=31.52 Aligned_cols=20 Identities=40% Similarity=0.979 Sum_probs=16.1
Q ss_pred cccCCCC--CcccC---CCcccccC
Q psy5147 78 FCGCACE--GYCDP---EICACALA 97 (158)
Q Consensus 78 ~CGC~C~--g~C~P---eTC~Cs~a 97 (158)
..||+|. +.|.+ .+|+|...
T Consensus 66 ~~gC~C~~~~~C~~~~~~~C~C~~~ 90 (299)
T 1mvh_A 66 QSGCNCSSLGGCDLNNPSRCECLDD 90 (299)
T ss_dssp CCCCCCCCSSSSCTTCTTTCSSSTT
T ss_pred CCCCcCcCCCCcCCCCCCCCccccc
Confidence 3788897 59998 89999854
No 4
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*
Probab=50.79 E-value=6.4 Score=32.30 Aligned_cols=20 Identities=30% Similarity=0.796 Sum_probs=17.2
Q ss_pred cccCCCCC--cccCCCcccccC
Q psy5147 78 FCGCACEG--YCDPEICACALA 97 (158)
Q Consensus 78 ~CGC~C~g--~C~PeTC~Cs~a 97 (158)
..||+|.+ .|.+.+|+|...
T Consensus 47 ~~gC~C~~~~~C~~~~C~C~~~ 68 (302)
T 1ml9_A 47 RVGCSCASDEECMYSTCQCLDE 68 (302)
T ss_dssp CCCCCCSSTTGGGSTTSGGGTT
T ss_pred CCCccCcCCCCcCCCCCcChhh
Confidence 47999987 899999999874
No 5
>1ans_A Neurotoxin III; NMR {Anemonia sulcata} SCOP: g.11.1.1
Probab=32.78 E-value=20 Score=21.08 Aligned_cols=21 Identities=38% Similarity=1.042 Sum_probs=14.3
Q ss_pred cccccCCcccccCCCCCCccccc
Q psy5147 92 CACALAGIKCQVDRQNFPCGCSR 114 (158)
Q Consensus 92 C~Cs~aGIkCQVDr~~FPCgCt~ 114 (158)
|.|..+| |-+-..-+||||+.
T Consensus 4 CPC~~~g--CpWGQ~~~~~GCSg 24 (27)
T 1ans_A 4 CPCYWGG--CPWGQNCYPEGCSG 24 (27)
T ss_dssp CCSTTTT--CSSSCSSCSSCSSS
T ss_pred ccccccC--CccccccccccCcC
Confidence 5666643 66776677888864
No 6
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=30.45 E-value=67 Score=21.84 Aligned_cols=29 Identities=17% Similarity=0.287 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHcCCcccChhhHHHHHHH
Q psy5147 44 VKIRQRRAMLRAAGVDKIDPTEKNQCKQI 72 (158)
Q Consensus 44 v~~k~RraLLrasGVk~Id~~Ek~el~~i 72 (158)
||..-=+.|+|..||++|..+-..++..+
T Consensus 11 ip~~~I~Riar~~Gv~rIs~da~~~l~~~ 39 (84)
T 2hue_C 11 ITKPAIRRLARRGGVKRISGLIYEETRGV 39 (84)
T ss_dssp SCHHHHHHHHHHTTCCEECTTHHHHHHHH
T ss_pred CCHHHHHHHHHHcCchhccHHHHHHHHHH
Confidence 44444566789999999999877766543
No 7
>1ews_A RK-1 defensin, alpha-defisin; alpha defensin, triple-stranded beta-sheet, antimicrobial protein; NMR {Oryctolagus cuniculus} SCOP: g.9.1.1
Probab=28.89 E-value=9.4 Score=23.13 Aligned_cols=11 Identities=55% Similarity=1.510 Sum_probs=9.1
Q ss_pred cCCCCCcccCC
Q psy5147 80 GCACEGYCDPE 90 (158)
Q Consensus 80 GC~C~g~C~Pe 90 (158)
-|+|+.+|+|=
T Consensus 2 pcsckkycdpw 12 (32)
T 1ews_A 2 PCSCKKYCDPW 12 (32)
T ss_dssp CSEEESSCCTT
T ss_pred CcccccccChh
Confidence 38999999984
No 8
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=28.82 E-value=63 Score=23.00 Aligned_cols=29 Identities=17% Similarity=0.302 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHcCCcccChhhHHHHHHH
Q psy5147 44 VKIRQRRAMLRAAGVDKIDPTEKNQCKQI 72 (158)
Q Consensus 44 v~~k~RraLLrasGVk~Id~~Ek~el~~i 72 (158)
||..-=+.|+|.+||++|..+-..++..+
T Consensus 29 ip~~~I~Rlar~~Gv~rIS~da~~~l~~~ 57 (102)
T 1id3_B 29 ITKPAIRRLARRGGVKRISGLIYEEVRAV 57 (102)
T ss_dssp SCHHHHHHHHHHTTCCEECTTHHHHHHHH
T ss_pred CCHHHHHHHHHHcCchhccHHHHHHHHHH
Confidence 56666667779999999998877666443
No 9
>2lua_A Protein MALE-specific lethal-2; DNA binding protein, metal binding; NMR {Drosophila melanogaster}
Probab=28.22 E-value=34 Score=22.79 Aligned_cols=28 Identities=32% Similarity=0.845 Sum_probs=21.7
Q ss_pred cccCCCcccccCCcccccCCCCCCcccccCccCCCC
Q psy5147 86 YCDPEICACALAGIKCQVDRQNFPCGCSRDCCANPK 121 (158)
Q Consensus 86 ~C~PeTC~Cs~aGIkCQVDr~~FPCgCt~~~C~Np~ 121 (158)
.|--..|.|-.+|-.|- -|-|. +|.||-
T Consensus 20 TC~~~RCpCY~~~~sC~------~C~C~--GCkNPh 47 (52)
T 2lua_A 20 TCRNSRCPCYKSYNSCA------GCHCV--GCKNPH 47 (52)
T ss_dssp TTTSTTCHHHHTTCCCS------SCCCS--SCCCSC
T ss_pred eEcCCccceecCCCccC------CCEec--CcCCCC
Confidence 48888888888888883 27775 899995
No 10
>2kgu_A Purotoxin-1; P2X receptor; NMR {Geolycosa}
Probab=27.09 E-value=33 Score=21.13 Aligned_cols=21 Identities=38% Similarity=1.021 Sum_probs=13.4
Q ss_pred cccCCcccccCCC---CCCcccccC
Q psy5147 94 CALAGIKCQVDRQ---NFPCGCSRD 115 (158)
Q Consensus 94 Cs~aGIkCQVDr~---~FPCgCt~~ 115 (158)
|+.++++|. +.. +-||-|+..
T Consensus 3 CA~~y~~C~-~~~CC~~r~C~Cs~~ 26 (35)
T 2kgu_A 3 CAEKGIRCD-DIHCCTGLKCKCNAS 26 (35)
T ss_dssp CBCTTCCCS-SSCBCTTCEEECCSS
T ss_pred hhhhccccC-CccCcCCCCeEEecc
Confidence 677777777 343 557777643
No 11
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=25.48 E-value=1.1e+02 Score=19.82 Aligned_cols=29 Identities=14% Similarity=0.312 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHcCCcccChhhHHHHHHH
Q psy5147 44 VKIRQRRAMLRAAGVDKIDPTEKNQCKQI 72 (158)
Q Consensus 44 v~~k~RraLLrasGVk~Id~~Ek~el~~i 72 (158)
||---=+.|+|..|+.+|..+-..++.++
T Consensus 7 lp~a~v~Rl~r~~g~~ris~~a~~~l~e~ 35 (70)
T 1ku5_A 7 LPIAPVDRLIRKAGAERVSEQAAKVLAEY 35 (70)
T ss_dssp SCHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CChHHHHHHHHHcCcceeCHHHHHHHHHH
Confidence 45555567889999999999877776554
No 12
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=24.75 E-value=64 Score=21.78 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=18.5
Q ss_pred HHHHHHHcCCcccChhhHHHHHHH
Q psy5147 49 RRAMLRAAGVDKIDPTEKNQCKQI 72 (158)
Q Consensus 49 RraLLrasGVk~Id~~Ek~el~~i 72 (158)
=..|||.+||.+++..-..+|.++
T Consensus 7 i~~iLk~~G~~~~~~~v~~~L~e~ 30 (68)
T 1taf_A 7 IMSILKELNVQEYEPRVVNQLLEF 30 (68)
T ss_dssp HHHHHHHTTCCCBCTHHHHHHHHH
T ss_pred HHHHHHHCCCcccCHHHHHHHHHH
Confidence 357999999999888777666543
No 13
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1
Probab=23.59 E-value=30 Score=21.21 Aligned_cols=20 Identities=40% Similarity=1.052 Sum_probs=12.9
Q ss_pred Ccccc------cCCcccccCCCCCCcc
Q psy5147 91 ICACA------LAGIKCQVDRQNFPCG 111 (158)
Q Consensus 91 TC~Cs------~aGIkCQVDr~~FPCg 111 (158)
+|+|. .+|..|+ |-..|||+
T Consensus 20 ~C~C~~Gy~L~~d~~tC~-dide~pCg 45 (51)
T 1kig_L 20 RCSCAHGYVLGDDSKSCV-STERFPCG 45 (51)
T ss_dssp CCCCCTTEEECTTSSCEE-ECSSSCTT
T ss_pred EEeCCCCcEECCCCCccc-cCCcccCC
Confidence 47774 4677785 44567776
No 14
>3ix0_A Beta-microseminoprotein; beta sheet, greek KEY motif, alternative splicing, disulfide bond, polymorphism, secreted, protein binding; 2.30A {Homo sapiens} PDB: 2iz3_A
Probab=21.30 E-value=15 Score=26.42 Aligned_cols=14 Identities=36% Similarity=0.824 Sum_probs=11.8
Q ss_pred CCcccccCCccccc
Q psy5147 90 EICACALAGIKCQV 103 (158)
Q Consensus 90 eTC~Cs~aGIkCQV 103 (158)
+.|+|+..||.|=-
T Consensus 38 ~~C~C~~~Gi~CC~ 51 (94)
T 3ix0_A 38 ETCTCYETEISCCT 51 (94)
T ss_dssp EEEEECSSEEEEEE
T ss_pred cEeEecCCCceecc
Confidence 57999999999853
No 15
>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8
Probab=20.29 E-value=45 Score=25.40 Aligned_cols=30 Identities=10% Similarity=0.091 Sum_probs=16.9
Q ss_pred CCCHHHHH-HHHHHcCCcccChhhHHHHHHHHh
Q psy5147 43 PVKIRQRR-AMLRAAGVDKIDPTEKNQCKQIRI 74 (158)
Q Consensus 43 Pv~~k~Rr-aLLrasGVk~Id~~Ek~el~~iR~ 74 (158)
|||+..|| .|.|. |++.-.+-|-.+++||.
T Consensus 41 ~iPTEERRkeLvK~--akk~aEeaKVaIRNIRR 71 (123)
T 3lhp_S 41 VFPTEERIKDWLKI--VRGEAEQARVAVRNVGR 71 (123)
T ss_dssp SCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred eCCCHHHHHHHHHH--HHHHHHHHHHHHHHHhH
Confidence 34455554 55554 45555556667777774
Done!