Query psy5147
Match_columns 158
No_of_seqs 54 out of 56
Neff 2.9
Searched_HMMs 13730
Date Fri Aug 16 18:30:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5147.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5147hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ml9a_ b.85.7.1 (A:) Dim-5 {F 47.0 4.3 0.00031 30.8 2.1 22 78-99 39-62 (284)
2 d1mvha_ b.85.7.1 (A:) SET doma 33.8 16 0.0012 27.7 3.5 19 78-96 65-88 (269)
3 d2huec1 a.22.1.1 (C:20-101) Hi 30.8 33 0.0024 21.9 4.3 32 41-72 7-38 (82)
4 d1ewsa_ g.9.1.1 (A:) Alpha-def 28.9 4.4 0.00032 23.1 -0.4 11 80-90 2-12 (32)
5 d1m0ja_ g.46.1.1 (A:) Metallot 28.7 11 0.00081 20.8 1.3 16 80-95 10-25 (28)
6 d1e88a3 g.27.1.1 (A:1-41) Fibr 28.6 7.1 0.00052 23.5 0.5 13 91-103 28-40 (41)
7 d1qjla_ g.46.1.1 (A:) Metallot 26.3 13 0.00094 20.5 1.3 15 80-94 12-28 (28)
8 d1is1a_ d.67.3.1 (A:) Ribosome 21.3 30 0.0022 25.1 2.9 52 21-74 81-133 (185)
9 d1ek8a_ d.67.3.1 (A:) Ribosome 20.0 33 0.0024 24.8 2.9 51 22-74 82-133 (185)
10 d1yt8a4 c.46.1.2 (A:243-372) T 19.5 44 0.0032 21.7 3.3 25 46-70 10-34 (130)
No 1
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}
Probab=46.98 E-value=4.3 Score=30.80 Aligned_cols=22 Identities=27% Similarity=0.641 Sum_probs=16.6
Q ss_pred cccCCCC--CcccCCCcccccCCc
Q psy5147 78 FCGCACE--GYCDPEICACALAGI 99 (158)
Q Consensus 78 ~CGC~C~--g~C~PeTC~Cs~aGI 99 (158)
..||+|. ..|++.+|+|....+
T Consensus 39 ~~gC~C~~~~~c~~~~C~C~~~~~ 62 (284)
T d1ml9a_ 39 RVGCSCASDEECMYSTCQCLDEMA 62 (284)
T ss_dssp CCCCCCSSTTGGGSTTSGGGTTSC
T ss_pred CCCCCCcCCCCcCCCCCcChhhcC
Confidence 4588886 478999999966543
No 2
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=33.77 E-value=16 Score=27.71 Aligned_cols=19 Identities=47% Similarity=1.209 Sum_probs=13.3
Q ss_pred cccCCCC--Cccc---CCCccccc
Q psy5147 78 FCGCACE--GYCD---PEICACAL 96 (158)
Q Consensus 78 ~CGC~C~--g~C~---PeTC~Cs~ 96 (158)
..||+|. +.|+ +..|+|..
T Consensus 65 ~~gC~C~~~~~C~~~~~~~C~C~~ 88 (269)
T d1mvha_ 65 QSGCNCSSLGGCDLNNPSRCECLD 88 (269)
T ss_dssp CCCCCCCCSSSSCTTCTTTCSSST
T ss_pred cCCCCCCCCCCcCCCCCcceeccc
Confidence 5788886 4565 45699975
No 3
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=30.83 E-value=33 Score=21.92 Aligned_cols=32 Identities=16% Similarity=0.288 Sum_probs=24.6
Q ss_pred ccCCCHHHHHHHHHHcCCcccChhhHHHHHHH
Q psy5147 41 LRPVKIRQRRAMLRAAGVDKIDPTEKNQCKQI 72 (158)
Q Consensus 41 lqPv~~k~RraLLrasGVk~Id~~Ek~el~~i 72 (158)
+|=||..-=+.|.+.+||++|..+-..++..+
T Consensus 7 i~gI~k~~i~Riar~~Gv~ris~d~~~~l~~~ 38 (82)
T d2huec1 7 IQGITKPAIRRLARRGGVKRISGLIYEETRGV 38 (82)
T ss_dssp CCSSCHHHHHHHHHHTTCCEECTTHHHHHHHH
T ss_pred hcCcCHHHHHHHHHHcCcccchHHHHHHHHHH
Confidence 44567777778999999999999877666544
No 4
>d1ewsa_ g.9.1.1 (A:) Alpha-defensin rk-1 {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=28.89 E-value=4.4 Score=23.13 Aligned_cols=11 Identities=55% Similarity=1.510 Sum_probs=9.1
Q ss_pred cCCCCCcccCC
Q psy5147 80 GCACEGYCDPE 90 (158)
Q Consensus 80 GC~C~g~C~Pe 90 (158)
-|+|+.+|+|=
T Consensus 2 pcsckkycdpw 12 (32)
T d1ewsa_ 2 PCSCKKYCDPW 12 (32)
T ss_dssp CSEEESSCCTT
T ss_pred CcccccccChh
Confidence 38999999984
No 5
>d1m0ja_ g.46.1.1 (A:) Metallothionein {Black rockcod (Notothenia coriiceps) [TaxId: 8208]}
Probab=28.65 E-value=11 Score=20.80 Aligned_cols=16 Identities=38% Similarity=1.138 Sum_probs=12.0
Q ss_pred cCCCCCcccCCCcccc
Q psy5147 80 GCACEGYCDPEICACA 95 (158)
Q Consensus 80 GC~C~g~C~PeTC~Cs 95 (158)
-|.|.|.|.--.|+|-
T Consensus 10 tcncggsctctncsck 25 (28)
T d1m0ja_ 10 TCNCGGSCTCTNCSCK 25 (28)
T ss_dssp SCCCSSSCCSSSCCCT
T ss_pred ccccCCceeecCcccc
Confidence 3778888877777774
No 6
>d1e88a3 g.27.1.1 (A:1-41) Fibronectin {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.64 E-value=7.1 Score=23.49 Aligned_cols=13 Identities=38% Similarity=1.091 Sum_probs=11.0
Q ss_pred CcccccCCccccc
Q psy5147 91 ICACALAGIKCQV 103 (158)
Q Consensus 91 TC~Cs~aGIkCQV 103 (158)
-|.|--+||.||.
T Consensus 28 lCTClgnGisC~E 40 (41)
T d1e88a3 28 LCTCLGNGVSCQE 40 (41)
T ss_dssp EEEECSSSCCCEE
T ss_pred EEeeeCCceeccc
Confidence 3889999999984
No 7
>d1qjla_ g.46.1.1 (A:) Metallothionein {Purple sea urchin (Strongylocentrotus purpuratus) [TaxId: 7668]}
Probab=26.34 E-value=13 Score=20.53 Aligned_cols=15 Identities=53% Similarity=1.462 Sum_probs=6.5
Q ss_pred cCCCC-C-cccCCCccc
Q psy5147 80 GCACE-G-YCDPEICAC 94 (158)
Q Consensus 80 GC~C~-g-~C~PeTC~C 94 (158)
||.|. | .|....|+|
T Consensus 12 gckcgsgcsctegncac 28 (28)
T d1qjla_ 12 GCKCGSGCSCTEGNCAC 28 (28)
T ss_dssp TCCTTSCCCCBTTBCCC
T ss_pred CcccCCCccccCCcccC
Confidence 45554 2 344444443
No 8
>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio parahaemolyticus [TaxId: 670]}
Probab=21.27 E-value=30 Score=25.06 Aligned_cols=52 Identities=15% Similarity=0.252 Sum_probs=31.4
Q ss_pred cccccCCCCCCCcccCccc-cccCCCHHHHHHHHHHcCCcccChhhHHHHHHHHh
Q psy5147 21 DVYTSGIGPVPALQCGVAV-DLRPVKIRQRRAMLRAAGVDKIDPTEKNQCKQIRI 74 (158)
Q Consensus 21 ~~~~~~~~~~~~~e~d~~~-flqPv~~k~RraLLrasGVk~Id~~Ek~el~~iR~ 74 (158)
-..+|+.|-....+-.... -+.|++...|.+|.|.+ +.+-.+-|..++.||.
T Consensus 81 AI~~s~lglnp~~dg~~Iri~iP~lT~E~R~elvK~~--k~~~E~akv~iRniRr 133 (185)
T d1is1a_ 81 AIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIV--RGEAEGGRVAVRNIRR 133 (185)
T ss_dssp HHHHTTSSCCCEEETTEEEEECCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHhcccccccccCCceeeecCCCCcHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 3456777754332222222 56678889999988876 4444555566677764
No 9
>d1ek8a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Escherichia coli [TaxId: 562]}
Probab=20.04 E-value=33 Score=24.83 Aligned_cols=51 Identities=14% Similarity=0.226 Sum_probs=32.1
Q ss_pred ccccCCCCCCCcccCccc-cccCCCHHHHHHHHHHcCCcccChhhHHHHHHHHh
Q psy5147 22 VYTSGIGPVPALQCGVAV-DLRPVKIRQRRAMLRAAGVDKIDPTEKNQCKQIRI 74 (158)
Q Consensus 22 ~~~~~~~~~~~~e~d~~~-flqPv~~k~RraLLrasGVk~Id~~Ek~el~~iR~ 74 (158)
..+|+.|-.+..+-+... -+.|++...|..|.|.+ +++-.+-|..++.||.
T Consensus 82 I~~s~lgl~p~~dg~~Iri~iP~lT~E~R~elvK~~--k~~~E~~kv~iR~iRr 133 (185)
T d1ek8a_ 82 IMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIV--RGEAEQARVAVRNVRR 133 (185)
T ss_dssp HHHTCSSCCCEEETTEEEEECCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHhccCCCCCCccccceecccCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 345777754443333322 56678899999998875 4445556667777764
No 10
>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=19.51 E-value=44 Score=21.68 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=18.6
Q ss_pred HHHHHHHHHHcCCcccChhhHHHHH
Q psy5147 46 IRQRRAMLRAAGVDKIDPTEKNQCK 70 (158)
Q Consensus 46 ~k~RraLLrasGVk~Id~~Ek~el~ 70 (158)
.++-++++..+||+.|+.+|..++.
T Consensus 10 ~~~~~~~~~~~~~~~I~~~e~~~~l 34 (130)
T d1yt8a4 10 AQRARAVADRAGVERLDLAGLAQWQ 34 (130)
T ss_dssp HHHHHHHHHHHTCEEECHHHHHHHH
T ss_pred HHHHHHHHHHcCCcccCHHHHHHHH
Confidence 3455677788899999998876653
Done!