RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5147
(158 letters)
>gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase
subunit B; Validated.
Length = 422
Score = 32.1 bits (74), Expect = 0.083
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 19 DRDVYTSG--IGPVPALQCGVAVD--LRPVKIRQRRAM--LRAAG 57
DR + P P LQ GVA D LRP+ + + L AAG
Sbjct: 343 DRADWYQRDFFAPHPFLQFGVATDATLRPLDSQGGPVIENLYAAG 387
>gnl|CDD|221770 pfam12785, VESA1_N, Variant erythrocyte surface antigen-1. This
family represents the N-terminal of the variant
erythrocyte surface antigen 1, versions a and b, of
Babesia. Babesia bovis is a tick-borne,
intra-erythrocytic, protozoal parasite of cattle that
shares many lifestyle parallels with the most virulent
of the human malarial parasites, Plasmodium falciparum.
Babesia uses antigenic variation to establish consistent
infections of long duration. The two variants of VESA1,
a and b, are expressed from different but closely
related genes, and variation is achieved through the
involvement of a segmental gene conversion mechanism and
low-frequency epigenetic in situ switching of
transcriptional activity from the VESA1 gene-pair to a
possible other gene pair.
Length = 428
Score = 29.2 bits (66), Expect = 0.98
Identities = 16/51 (31%), Positives = 18/51 (35%), Gaps = 9/51 (17%)
Query: 69 CKQIRISREFCGCAC-EGYCDPEI-CACALAGIKCQVDRQNFPCGCSRDCC 117
C S C C+ G C C CALAG C+ C C C
Sbjct: 142 CSDSGGSDHGCKCSTGGGSCSAGKECKCALAGKCCK-------CCCKGKCG 185
>gnl|CDD|235423 PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase
subunit C; Provisional.
Length = 256
Score = 28.3 bits (64), Expect = 1.4
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 5/30 (16%)
Query: 36 GVAVDLRPVKIRQR-----RAMLRAAGVDK 60
G AV L+P + + + +L AAG+
Sbjct: 28 GAAVGLKPRQEENKLLDKQKNILAAAGLVT 57
>gnl|CDD|226530 COG4043, COG4043, Preprotein translocase subunit Sec61beta
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 111
Score = 27.4 bits (61), Expect = 1.6
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 50 RAMLRAAGVDKIDPTEKNQCKQIRISREF 78
MLR ++ + P + + +R R F
Sbjct: 61 EEMLREEPIENVLPDVPSFEEGLRRYRNF 89
>gnl|CDD|132354 TIGR03311, Se_dep_Molyb_1, selenium-dependent molybdenum
hydroxylase 1. Members of this protein family show full
length homology to the molybdenum-containing aldehyde
oxido-reductase of Desulfovibrio gigas. Members,
however, are found only within species that have, and
near those genes that encode, a set of predicted
accessory proteins for selenium-dependent molybdenum
hydroxylases. The best known examples of such enzymes
are forms of xanthine dehydrogenase and purine
hydroxylase; this family appears to be another such
enzyme.
Length = 848
Score = 28.3 bits (63), Expect = 2.0
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 11/69 (15%)
Query: 18 FDRDVYTSGIGPVPALQCGVAVDLRPVKIRQRRAMLRAAGVDKIDPTEKNQCKQIRISRE 77
++DVY A+QCG + P + +A+L +PTE K ++ +
Sbjct: 76 REKDVYAWAFAKAGAVQCGFCI---PGMVISAKALLDK----NPNPTEAEIKKALKGNI- 127
Query: 78 FCGCACEGY 86
C C GY
Sbjct: 128 ---CRCTGY 133
>gnl|CDD|181651 PRK09105, PRK09105, putative aminotransferase; Provisional.
Length = 370
Score = 27.7 bits (62), Expect = 2.6
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 29 PVPALQCGVAVDLRPVKIRQRRAMLRAAGVDKID 62
PVPA G+A P + QRRA A D I
Sbjct: 264 PVPAAAAGLASLRDPKLVPQRRAENAAVREDTIA 297
>gnl|CDD|170049 PRK09692, PRK09692, integrase; Provisional.
Length = 413
Score = 27.7 bits (61), Expect = 3.1
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
Query: 27 IGPVPALQCGVAVDLRPVKIRQRRAMLRAAGVDKIDPTEKNQCKQIRISRE 77
GP P++ A R RA R+ +IDP E +Q +Q+R S E
Sbjct: 60 FGPYPSVTLADA--------RNYRAESRSLLAKQIDPQE-HQQEQLRSSLE 101
>gnl|CDD|235658 PRK05972, ligD, ATP-dependent DNA ligase; Reviewed.
Length = 860
Score = 27.6 bits (62), Expect = 3.5
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 7/39 (17%)
Query: 40 DLRPVKIRQRRAMLRAAGVDKIDPTEKNQCKQIRISREF 78
DLR + + +RRA LRA E + +IR S F
Sbjct: 346 DLRELPLEERRARLRAL-------LEAARSDRIRFSEHF 377
>gnl|CDD|215913 pfam00425, Chorismate_bind, chorismate binding enzyme. This family
includes the catalytic regions of the chorismate binding
enzymes anthranilate synthase, isochorismate synthase,
aminodeoxychorismate synthase and para-aminobenzoate
synthase.
Length = 254
Score = 27.1 bits (61), Expect = 3.8
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 18 FDRDVYTSGIGPVPALQCGV-AVDLRPVKIRQRRAMLRA-AGV 58
FDR +Y +G + G AV +R I RA L A AG+
Sbjct: 196 FDRGLYAGAVGWLDPDGNGDFAVAIRTALIDNGRARLYAGAGI 238
>gnl|CDD|219999 pfam08743, Nse4, Nse4. Nse4 is a component of the Smc5/6 DNA
repair complex. It forms interactions with Smc5 and
Nse1.
Length = 305
Score = 27.4 bits (61), Expect = 3.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 38 AVDLRPVKIRQRRAMLRAAGVDKIDPTE 65
+V+ + K RQRRA R ++ PTE
Sbjct: 150 SVEPKVRKQRQRRARERKKPGQEVRPTE 177
>gnl|CDD|202558 pfam03159, XRN_N, XRN 5'-3' exonuclease N-terminus. This family
aligns residues towards the N-terminus of several
proteins with multiple functions. The members of this
family all appear to possess 5'-3' exonuclease activity
EC:3.1.11.-. Thus, the aligned region may be necessary
for 5' to 3' exonuclease function. The family also
contains several Xrn1 and Xrn2 proteins. The 5'-3'
exoribonucleases Xrn1p and Xrn2p/Rat1p function in the
degradation and processing of several classes of RNA in
Saccharomyces cerevisiae. Xrn1p is the main enzyme
catalyzing cytoplasmic mRNA degradation in multiple
decay pathways, whereas Xrn2p/Rat1p functions in the
processing of rRNAs and small nucleolar RNAs (snoRNAs)
in the nucleus.
Length = 237
Score = 26.5 bits (59), Expect = 6.6
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 1 MSGIIHTC-KPSRSPSNAFDRDVYT 24
M+GIIH C P P + +++
Sbjct: 37 MNGIIHPCSHPEDKPFPETEDEMFV 61
>gnl|CDD|170114 PRK09823, PRK09823, putative inner membrane protein; Provisional.
Length = 160
Score = 26.0 bits (57), Expect = 7.5
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 28 GPVPALQCGVAVDLRPVKIRQR---RAMLRAAG 57
G +PAL GVAV P KI Q+ R + G
Sbjct: 60 GAIPALLTGVAVACLPEKIYQQKIYRCLACGIG 92
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.138 0.452
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,922,499
Number of extensions: 686372
Number of successful extensions: 726
Number of sequences better than 10.0: 1
Number of HSP's gapped: 726
Number of HSP's successfully gapped: 21
Length of query: 158
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 69
Effective length of database: 6,990,096
Effective search space: 482316624
Effective search space used: 482316624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.0 bits)