RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5147
(158 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.9 bits (129), Expect = 3e-09
Identities = 32/175 (18%), Positives = 56/175 (32%), Gaps = 58/175 (33%)
Query: 6 HTCKPSRSPSNAFDRDVYTSGIG-PVPALQCGVAV-DLRPVKIRQRRAMLRAAGVDKID- 62
+ P+ S + D + G P P L ++ +L +++ V+K +
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSPML----SISNLTQEQVQDY--------VNKTNS 358
Query: 63 --PTEKNQCKQIRIS-----REF--CGCACEGYCDPEICACALAGIKCQVDRQNFPCGC- 112
P K Q+ IS + G P+ +L G+ + + P G
Sbjct: 359 HLPAGK----QVEISLVNGAKNLVVSG-------PPQ----SLYGLNLTLRKAKAPSGLD 403
Query: 113 -------SRDCCANPKGRIEFNPVRV--HSHYIQTIMRMKAQKKDDDDMSRQHFS 158
R K F PV HSH + A + D+ + + S
Sbjct: 404 QSRIPFSER----KLKFSNRFLPVASPFHSHLLV-----PASDLINKDLVKNNVS 449
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.3 bits (80), Expect = 0.003
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 10/40 (25%)
Query: 65 EKNQCKQIRISREFCGCACEGYCDPEICACALAGIKCQVD 104
EK K+++ S + Y + A ALA IK ++
Sbjct: 18 EKQALKKLQASLKL-------YA-DD-SAPALA-IKATME 47
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1,
structural genomics, SGC, structural genomics
consortium, alternative splicing, ANK repeat; HET: MLZ
SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A*
3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A*
3rjw_A* 2o8j_A*
Length = 287
Score = 34.5 bits (79), Expect = 0.008
Identities = 10/52 (19%), Positives = 14/52 (26%), Gaps = 2/52 (3%)
Query: 77 EFCGCACEGYCDPEICACALAGIKCQVDRQNFPCGCSRDCCANPKGRIEFNP 128
C C C C C ++C D+ + P E N
Sbjct: 79 HLQYCVCIDDCSSSNCMCGQLSMRCWYDKDG-RLLPEFNMA-EPPLIFECNH 128
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor
2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus
SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A*
1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A*
3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A*
1l9d_A* 1zov_A*
Length = 389
Score = 30.7 bits (70), Expect = 0.18
Identities = 9/72 (12%), Positives = 19/72 (26%), Gaps = 8/72 (11%)
Query: 34 QCGVAV---DLRPVKIRQRRAMLRAAGVD--KIDPTE-KNQCKQIRISREFCGCACE--G 85
+ GV V + + + + ++ E + I + + G
Sbjct: 86 KTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSG 145
Query: 86 YCDPEICACALA 97
E C A
Sbjct: 146 VLFSENCIRAYR 157
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 30.6 bits (68), Expect = 0.24
Identities = 9/74 (12%), Positives = 16/74 (21%), Gaps = 3/74 (4%)
Query: 61 IDPTEKNQCKQIRISREFCGCACEGYCDPEICACALAGIKCQVDRQNFPCGCSRDCCANP 120
D + + + + C C C C+ + C CS
Sbjct: 596 KDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCK---NNGMCRDGWNRYVCDCSGTGYLGR 652
Query: 121 KGRIEFNPVRVHSH 134
E +
Sbjct: 653 SCEREATVLSYDGS 666
Score = 27.5 bits (60), Expect = 2.7
Identities = 12/63 (19%), Positives = 16/63 (25%)
Query: 73 RISREFCGCACEGYCDPEICACALAGIKCQVDRQNFPCGCSRDCCANPKGRIEFNPVRVH 132
+S F GC E L+ + Q D + G C N
Sbjct: 371 PVSNNFMGCLKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPITFETPE 430
Query: 133 SHY 135
S
Sbjct: 431 SFI 433
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati
regulator, DNA damage, DNA repair, DNA-binding, nucleus,
ST genomics; HET: SAH; 1.59A {Homo sapiens}
Length = 290
Score = 29.1 bits (65), Expect = 0.59
Identities = 13/56 (23%), Positives = 15/56 (26%), Gaps = 7/56 (12%)
Query: 69 CKQIRISREFCGCACEGY-CDPEICACALAGIKCQVDRQNFPCGCSRDCCANPKGR 123
F GC C C P C+C G C RD + K
Sbjct: 50 ADIDPTQITFPGCICVKTPCLPGTCSCLRHGENYD------DNSCLRDIGSGGKYA 99
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 28.9 bits (64), Expect = 0.75
Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 65 EKNQCKQIRISREFCGCACEGYCDPEICACAL--AGIKCQVDRQNFPCGCSRDCCANPKG 122
E + R + + CG G C C C G CQ +R C R + +G
Sbjct: 513 ECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRG 572
Query: 123 R 123
R
Sbjct: 573 R 573
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus;
HET: SAM; 2.90A {Homo sapiens}
Length = 222
Score = 26.9 bits (60), Expect = 3.0
Identities = 9/54 (16%), Positives = 14/54 (25%), Gaps = 10/54 (18%)
Query: 69 CKQIRISREFCGCACEGYCDPEICACA------LAGIKCQVDRQNFPCGCSRDC 116
+ E C C+ D C + +C + C C C
Sbjct: 13 DVKPLSGYEATTCNCKKPDDDTRKGCVDDCLNRMIFAECSPNT----CPCGEQC 62
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent
methyltransferase histone H3 lysine- 9 methylation;
1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*
Length = 302
Score = 26.1 bits (57), Expect = 6.5
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 79 CGCACEGYCDPEICACALAGIKCQVDRQNFPCGCSRDCCANPKGRIE 125
C CA + C C C L + D + P + +G +
Sbjct: 50 CSCASDEECMYSTCQC-LDEMAPDSDEEADPYTRKKRFAYYSQGAKK 95
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 26.2 bits (57), Expect = 6.9
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 79 CGCACEGYCDPEICACAL--AGIKCQVDRQNFPCGCSRDCCANPKGR 123
C+ G C C C G C + C S + +G+
Sbjct: 534 EMCSGHGQCSCGDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGK 580
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation,
nuclear protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: a.4.1.18
Length = 108
Score = 24.9 bits (54), Expect = 9.4
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 55 AAGVDKIDPTEKNQCKQIRIS 75
G +K++ EK C+ +R+
Sbjct: 35 LPGTEKLNEKEKELCQVVRLV 55
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 25.5 bits (55), Expect = 9.6
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 7/45 (15%)
Query: 25 SGIGPVPALQ-------CGVAVDLRPVKIRQRRAMLRAAGVDKID 62
G P+ + V++ P R ++ GVD ++
Sbjct: 131 GGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVN 175
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9
methyltransferase 2, H3 lysine-9 specific 2, alternative
splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}
Length = 300
Score = 25.3 bits (55), Expect = 9.6
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 15/58 (25%)
Query: 73 RISREFCGCACEGYCDPEICACALAGIKCQVDRQ--------------NFPCGCSRDC 116
++ GC+C C + C A AG+ ++ N C C DC
Sbjct: 73 LVNEATFGCSCTD-CFFQKCCPAEAGVLLAYNKNQQIKIPPGTPIYECNSRCQCGPDC 129
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.138 0.452
Gapped
Lambda K H
0.267 0.0531 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,580,917
Number of extensions: 153714
Number of successful extensions: 631
Number of sequences better than 10.0: 1
Number of HSP's gapped: 612
Number of HSP's successfully gapped: 82
Length of query: 158
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 72
Effective length of database: 4,300,587
Effective search space: 309642264
Effective search space used: 309642264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.7 bits)