BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5149
(250 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HLG|A Chain A, Crystal Structure Of Human Gastric Lipase
pdb|1HLG|B Chain B, Crystal Structure Of Human Gastric Lipase
Length = 371
Score = 126 bits (317), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 98/157 (62%), Gaps = 9/157 (5%)
Query: 50 TEIIRYWGYPAEEHKVTTKDGYILTNFRIP-------NPGGYPLLFL-HGLTSSSDCFLG 101
+++I YWGYP EE++V T+DGYIL RIP N G P++FL HGL +S+ ++
Sbjct: 9 SQMITYWGYPNEEYEVVTEDGYILEVNRIPYGKKNSGNTGQRPVVFLQHGLLASATNWIS 68
Query: 102 RNPSVDIVFLLWKRGYDIWLWNARGNLYSREHVNLTTKQSKFYQFSYHEMGLYDTPALID 161
P+ + F+L GYD+WL N+RGN ++R ++ + +F+ FS+ EM YD PA ID
Sbjct: 69 NLPNNSLAFILADAGYDVWLGNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATID 128
Query: 162 YILAETGHKTLITLGHSLGSTNVLIATSLRPEYQAKR 198
+I+ +TG K L +GHS G+T IA S P AKR
Sbjct: 129 FIVKKTGQKQLHYVGHSQGTTIGFIAFSTNPSL-AKR 164
>pdb|1K8Q|A Chain A, Crystal Structure Of Dog Gastric Lipase In Complex With A
Phosphonate Inhibitor
pdb|1K8Q|B Chain B, Crystal Structure Of Dog Gastric Lipase In Complex With A
Phosphonate Inhibitor
Length = 377
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 98/157 (62%), Gaps = 9/157 (5%)
Query: 50 TEIIRYWGYPAEEHKVTTKDGYILTNFRIP-------NPGGYPLLFL-HGLTSSSDCFLG 101
+++I YWGYPAEE++V T+DGYIL RIP N G P+ FL HGL +S+ ++
Sbjct: 17 SQMITYWGYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWIS 76
Query: 102 RNPSVDIVFLLWKRGYDIWLWNARGNLYSREHVNLTTKQSKFYQFSYHEMGLYDTPALID 161
P+ + F+L GYD+WL N+RGN ++R ++ + +F+ FS+ EM YD PA ID
Sbjct: 77 NLPNNSLAFILADAGYDVWLGNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATID 136
Query: 162 YILAETGHKTLITLGHSLGSTNVLIATSLRPEYQAKR 198
+IL +TG L +GHS G+T IA S P+ AKR
Sbjct: 137 FILKKTGQDKLHYVGHSQGTTIGFIAFSTNPKL-AKR 172
>pdb|3QMM|A Chain A, Structure Of 6b, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3QMM|B Chain B, Structure Of 6b, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 25/103 (24%)
Query: 85 PLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRG--YDIWLWNARGNLYSREHVNLTTKQSK 142
P++ +HG+ SS F G +V W R Y + W+ G Y+ V S+
Sbjct: 5 PVVMVHGIGGSSSNFEGIKSY--LVSQGWSRDKLYAVDFWDKTGTNYNNGPV-----LSR 57
Query: 143 FYQFSYHEMGLYDTPALIDYILAETGHKTLITLGHSLGSTNVL 185
F Q +L ETG K + + HS+G N L
Sbjct: 58 FVQ----------------KVLDETGAKKVDIVAHSMGGANTL 84
>pdb|3D2C|A Chain A, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|B Chain B, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|C Chain C, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|D Chain D, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|E Chain E, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|F Chain F, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|G Chain G, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|H Chain H, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|I Chain I, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|J Chain J, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|K Chain K, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|L Chain L, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 25/103 (24%)
Query: 85 PLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRG--YDIWLWNARGNLYSREHVNLTTKQSK 142
P++ +HG+ SS F G +V W R Y + W+ G Y+ V S+
Sbjct: 5 PVVMVHGIGGSSSNFEGIKSY--LVSQGWSRDKLYAVDFWDKTGTNYNNGPV-----LSR 57
Query: 143 FYQFSYHEMGLYDTPALIDYILAETGHKTLITLGHSLGSTNVL 185
F Q +L ETG K + + HS+G N L
Sbjct: 58 FVQ----------------KVLDETGAKKVDIVAHSMGGANTL 84
>pdb|3D2B|A Chain A, Structure Of 2d9, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2B|B Chain B, Structure Of 2d9, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 25/103 (24%)
Query: 85 PLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRG--YDIWLWNARGNLYSREHVNLTTKQSK 142
P++ +HG+ +S F G +V W R Y + W+ G Y+ V S+
Sbjct: 5 PVVMVHGIGGASSNFAGIKSY--LVSQGWSRDKLYAVDFWDKTGTNYNNGPV-----LSR 57
Query: 143 FYQFSYHEMGLYDTPALIDYILAETGHKTLITLGHSLGSTNVL 185
F Q +L ETG K + + HS+G N L
Sbjct: 58 FVQ----------------KVLDETGAKKVDIVAHSMGGANTL 84
>pdb|3SM9|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor 3
Precursor In Presence Of Ly341495 Antagonist
Length = 479
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
Query: 37 QVANLLRLFKIPQTEIIRYWGYPAEEHKVTTKDGY 71
QVANLLRLF+IPQ Y + K++ K Y
Sbjct: 131 QVANLLRLFQIPQI------SYASTSAKLSDKSRY 159
>pdb|2E4U|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4U|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4V|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4V|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4W|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4W|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4X|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4X|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4Y|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
pdb|2E4Y|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
Length = 555
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
Query: 37 QVANLLRLFKIPQTEIIRYWGYPAEEHKVTTKDGY 71
QVANLLRLF+IPQ Y + K++ K Y
Sbjct: 132 QVANLLRLFQIPQI------SYASTSAKLSDKSRY 160
>pdb|1T2N|A Chain A, Structure Of A Thermostable Triple Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 25/103 (24%)
Query: 85 PLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRG--YDIWLWNARGNLYSREHVNLTTKQSK 142
P++ +HG+ +S F G +V W R Y + W+ G Y+ V S+
Sbjct: 5 PVVMVHGIGGASFNFAGIKSY--LVSQGWSRDKLYAVDFWDKTGTNYNNGPV-----LSR 57
Query: 143 FYQFSYHEMGLYDTPALIDYILAETGHKTLITLGHSLGSTNVL 185
F Q +L ETG K + + HS+G N L
Sbjct: 58 FVQ----------------KVLDETGAKKVDIVAHSMGGANTL 84
>pdb|3D2A|A Chain A, Structure Of 1-17a4, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 25/103 (24%)
Query: 85 PLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRG--YDIWLWNARGNLYSREHVNLTTKQSK 142
P++ +HG+ +S F G +V W R Y + W+ G Y+ V S+
Sbjct: 5 PVVMVHGIGGASFNFAGIKSY--LVSQGWSRDKLYAVDFWDKTGTNYNNGPV-----LSR 57
Query: 143 FYQFSYHEMGLYDTPALIDYILAETGHKTLITLGHSLGSTNVL 185
F Q +L ETG K + + HS+G N L
Sbjct: 58 FVQ----------------KVLDETGAKKVDIVAHSMGGANTL 84
>pdb|1T4M|A Chain A, Structure Of A Thermostable Double Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 25/103 (24%)
Query: 85 PLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRG--YDIWLWNARGNLYSREHVNLTTKQSK 142
P++ +HG+ +S F G +V W R Y + W+ G Y+ V S+
Sbjct: 5 PVVMVHGIGGASFNFAGIKSY--LVSQGWSRDKLYAVDFWDKTGTNYNNGPV-----LSR 57
Query: 143 FYQFSYHEMGLYDTPALIDYILAETGHKTLITLGHSLGSTNVL 185
F Q +L ETG K + + HS+G N L
Sbjct: 58 FVQ----------------KVLDETGAKKVDIVAHSMGGANTL 84
>pdb|1I6W|A Chain A, The Crystal Structure Of Bacillus Subtilis Lipase: A
Minimal AlphaBETA HYDROLASE ENZYME
pdb|1I6W|B Chain B, The Crystal Structure Of Bacillus Subtilis Lipase: A
Minimal AlphaBETA HYDROLASE ENZYME
pdb|1ISP|A Chain A, Crystal Structure Of Bacillus Subtilis Lipase At 1.3a
Resolution
pdb|1R4Z|A Chain A, Bacillus Subtilis Lipase A With Covalently Bound Rc-Ipg-
Phosphonate-Inhibitor
pdb|1R4Z|B Chain B, Bacillus Subtilis Lipase A With Covalently Bound Rc-Ipg-
Phosphonate-Inhibitor
pdb|1R50|A Chain A, Bacillus Subtilis Lipase A With Covalently Bound Sc-Ipg-
Phosphonate-Inhibitor
pdb|1R50|B Chain B, Bacillus Subtilis Lipase A With Covalently Bound Sc-Ipg-
Phosphonate-Inhibitor
Length = 181
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 25/103 (24%)
Query: 85 PLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRG--YDIWLWNARGNLYSREHVNLTTKQSK 142
P++ +HG+ +S F G +V W R Y + W+ G Y+ V S+
Sbjct: 5 PVVMVHGIGGASFNFAGIKSY--LVSQGWSRDKLYAVDFWDKTGTNYNNGPV-----LSR 57
Query: 143 FYQFSYHEMGLYDTPALIDYILAETGHKTLITLGHSLGSTNVL 185
F Q +L ETG K + + HS+G N L
Sbjct: 58 FVQ----------------KVLDETGAKKVDIVAHSMGGANTL 84
>pdb|2QXT|A Chain A, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 4.5
pdb|2QXT|B Chain B, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 4.5
pdb|2QXU|A Chain A, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 5.0
pdb|2QXU|B Chain B, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 5.0
pdb|2QXU|C Chain C, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 5.0
pdb|2QXU|D Chain D, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 5.0
pdb|2QXU|E Chain E, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 5.0
pdb|2QXU|F Chain F, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 5.0
pdb|2QXU|G Chain G, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 5.0
pdb|2QXU|H Chain H, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 5.0
Length = 179
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 25/103 (24%)
Query: 85 PLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRG--YDIWLWNARGNLYSREHVNLTTKQSK 142
P++ +HG+ +S F G +V W R Y + W+ G Y+ V S+
Sbjct: 3 PVVMVHGIGGASFNFAGIKSY--LVSQGWSRDKLYAVDFWDKTGTNYNNGPV-----LSR 55
Query: 143 FYQFSYHEMGLYDTPALIDYILAETGHKTLITLGHSLGSTNVL 185
F Q +L ETG K + + HS+G N L
Sbjct: 56 FVQ----------------KVLDETGAKKVDIVAHSMGGANTL 82
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 158 ALIDYILAETGHKTLITLGHSLGSTNVLIATSLRPE 193
A ID ++ E + L+ +GHS+G+ S+RP+
Sbjct: 83 AQIDRVIQELPDQPLLLVGHSMGAMLATAIASVRPK 118
>pdb|3IM8|A Chain A, Crystal Structure Of Mcat From Streptococcus Pneumoniae
Length = 307
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 136 LTTKQSKFYQFSYHEMGLYDTPALIDYILAETGHKTLITLGHSLGSTNVLIAT 188
+ T++ K Q Y + + T I +L E G++ + G SLG + L+A+
Sbjct: 48 IDTEEDKLNQTRYTQPAILATSVAIYRLLQEKGYQPDMVAGLSLGEYSALVAS 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,457,466
Number of Sequences: 62578
Number of extensions: 303478
Number of successful extensions: 692
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 684
Number of HSP's gapped (non-prelim): 15
length of query: 250
length of database: 14,973,337
effective HSP length: 96
effective length of query: 154
effective length of database: 8,965,849
effective search space: 1380740746
effective search space used: 1380740746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)