RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5149
(250 letters)
>gnl|CDD|215470 PLN02872, PLN02872, triacylglycerol lipase.
Length = 395
Score = 104 bits (260), Expect = 5e-26
Identities = 50/144 (34%), Positives = 77/144 (53%), Gaps = 8/144 (5%)
Query: 51 EIIRYWGYPAEEHKVTTKDGYILTNFRIPNPG-------GYPLLFLHGLTSSSDCFLGRN 103
++I GY EH + TKDGY+L R+ + G P+L HGL + D + +
Sbjct: 35 QLIHPAGYSCTEHTIQTKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGDAWFLNS 94
Query: 104 PSVDIVFLLWKRGYDIWLWNARGNLYSREHVNLTTKQSKFYQFSYHEMGLYDTPALIDYI 163
P + F+L G+D+W+ N RG +S HV L+ K +F+ +S+ E+ LYD +I Y+
Sbjct: 95 PEQSLGFILADHGFDVWVGNVRGTRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYV 154
Query: 164 LAETGHKTLITLGHSLGSTNVLIA 187
+ T K I +GHS G+ L A
Sbjct: 155 YSITNSKIFI-VGHSQGTIMSLAA 177
>gnl|CDD|217881 pfam04083, Abhydro_lipase, Partial alpha/beta-hydrolase lipase
region. This family corresponds to a N-terminal part of
an alpha/beta hydrolase domain.
Length = 62
Score = 78.4 bits (194), Expect = 4e-19
Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 7/58 (12%)
Query: 50 TEIIRYWGYPAEEHKVTTKDGYILTNFRIPNPG-------GYPLLFLHGLTSSSDCFL 100
+E+IR +GYP EEH+VTT+DGYILT RIP +L HGL +SS ++
Sbjct: 2 SELIRKYGYPVEEHEVTTEDGYILTLHRIPPGRNNRGRGKKPVVLLQHGLLASSADWV 59
>gnl|CDD|107357 cd06362, PBP1_mGluR, Ligand binding domain of the metabotropic
glutamate receptors (mGluR). Ligand binding domain of
the metabotropic glutamate receptors (mGluR), which are
members of the family C of G-protein-coupled receptors
that transduce extracellular signals into G-protein
activation and ultimately into cellular responses.
mGluRs bind to glutamate and function as an excitatory
neurotransmitter; they are involved in learning, memory,
anxiety, and the perception of pain. Eight subtypes of
mGluRs have been cloned so far, and are classified into
three groups according to their sequence similarities,
transduction mechanisms, and pharmacological profiles.
Group I is composed of mGlu1R and mGlu5R that both
stimulate PLC hydrolysis. Group II includes mGlu2R and
mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R,
mGlu6R, mGlu7R, and mGlu8R, which form group III.
Length = 452
Score = 66.9 bits (164), Expect = 7e-13
Identities = 26/51 (50%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Query: 3 SISNIDDTDYHCNKTQVR----KVISGVVGAASSVTSIQVANLLRLFKIPQ 49
S++ IDD Y + K ++GV+GA+ S SIQVANLLRLFKIPQ
Sbjct: 80 SLTKIDDCVYCDGGSPPPNNSPKPVAGVIGASYSSVSIQVANLLRLFKIPQ 130
>gnl|CDD|107370 cd06375, PBP1_mGluR_groupII, Ligand binding domain of the group II
metabotropic glutamate receptor. Ligand binding domain
of the group II metabotropic glutamate receptor, a
family that contains mGlu2R and mGlu3R, all of which
inhibit adenylyl cyclase. The metabotropic glutamate
receptor is a member of the family C of
G-protein-coupled receptors that transduce extracellular
signals into G-protein activation and ultimately into
intracellular responses. The mGluRs are classified into
three groups which comprise eight subtypes.
Length = 458
Score = 57.9 bits (140), Expect = 1e-09
Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 6/53 (11%)
Query: 3 SISNIDDTDYHC-NKTQVRK-----VISGVVGAASSVTSIQVANLLRLFKIPQ 49
S++ +D ++Y C + + + I+GV+G + S SIQVANLLRLF+IPQ
Sbjct: 80 SLTKVDTSEYECPDGSYAVQENSPLAIAGVIGGSYSSVSIQVANLLRLFQIPQ 132
>gnl|CDD|223669 COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta
hydrolase superfamily) [General function prediction
only].
Length = 282
Score = 50.0 bits (118), Expect = 3e-07
Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 22/142 (15%)
Query: 62 EHKVTTKDGYILTNFRIPNPGGYPLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRGYDIWL 121
+ DG L +R GG PL+ LHG SS + V Y +
Sbjct: 1 ASLLLAADGVRLA-YREAGGGGPPLVLLHGFPGSSSVWRPVFK----VLPALAARYRVIA 55
Query: 122 WNARGNLYSREHVNLTTKQSKFYQFSYHEMGLYDTPALIDYILAETGHKTLITLGHSLGS 181
+ RG+ S L + +L G + ++ +GHS+G
Sbjct: 56 PDLRGHGRS----------------DPAGYSLSAYADDLAALLDALGLEKVVLVGHSMGG 99
Query: 182 TNVLIATSLRPEYQAKRWIFDG 203
L P+ + + + G
Sbjct: 100 AVALALALRHPD-RVRGLVLIG 120
>gnl|CDD|107371 cd06376, PBP1_mGluR_groupIII, Ligand-binding domain of the group
III metabotropic glutamate receptor. Ligand-binding
domain of the group III metabotropic glutamate receptor,
a family which contains mGlu4R, mGluR6R, mGluR7, and
mGluR8; all of which inhibit adenylyl cyclase. The
metabotropic glutamate receptor is a member of the
family C of G-protein-coupled receptors that transduce
extracellular signals into G-protein activation and
ultimately into intracellular responses. The mGluRs are
classified into three groups which comprise eight
subtypes.
Length = 463
Score = 46.0 bits (109), Expect = 8e-06
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 23 ISGVVGAASSVTSIQVANLLRLFKIPQ 49
+ GV+GA++S SI VAN+LRLF+IPQ
Sbjct: 104 VVGVIGASASSVSIMVANILRLFQIPQ 130
>gnl|CDD|107369 cd06374, PBP1_mGluR_groupI, Ligand binding domain of the group I
metabotropic glutamate receptor. Ligand binding domain
of the group I metabotropic glutamate receptor, a family
containing mGlu1R and mGlu5R, all of which stimulate
phospholipase C (PLC) hydrolysis. The metabotropic
glutamate receptor is a member of the family C of
G-protein-coupled receptors that transduce extracellular
signals into G-protein activation and ultimately into
intracellular responses. The mGluRs are classified into
three groups which comprise eight subtypes.
Length = 472
Score = 44.1 bits (104), Expect = 3e-05
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 5 SNIDDTDYHCNKTQVRKVISGVVGAASSVTSIQVANLLRLFKIPQ 49
N D NK+ +K I GV+G SS +IQV NLL+LF IPQ
Sbjct: 102 VNPDGQSPGPNKS--KKPIVGVIGPGSSSVAIQVQNLLQLFNIPQ 144
>gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family
contains alpha/beta hydrolase enzymes of diverse
specificity.
Length = 187
Score = 42.0 bits (99), Expect = 8e-05
Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 20/108 (18%)
Query: 86 LLFLHGLTSSSDCFLGRNPSVDIVFLLWKRGYDIWLWNARGNLYSREHVNLTTKQSKFYQ 145
++ LHG S++ + + GY + + G+ S
Sbjct: 1 VVLLHGAGGSAESW-------RPLAEALAAGYRVLAPDLPGHGDSDGPPR--------TP 45
Query: 146 FSYHEMGLYDTPALIDYILAETGHKTLITLGHSLGSTNVLIATSLRPE 193
+S + A + +L G ++ +GHSLG L A + RPE
Sbjct: 46 YSLEDDA-----ADLAALLDALGLGPVVLVGHSLGGAVALAAAARRPE 88
>gnl|CDD|201306 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 226
Score = 41.7 bits (98), Expect = 1e-04
Identities = 13/81 (16%), Positives = 28/81 (34%), Gaps = 12/81 (14%)
Query: 117 YDIWLWNARGNLYSREHVNLTTKQSKFYQFSYHEMGLYDTPALIDYILAETGHKTLITLG 176
+D+ ++ RG S + + + D ++ +L G + +G
Sbjct: 1 FDVIAFDLRGFGRSSPPKD------------FADYRFDDLAEDLEALLDALGLDKVNLVG 48
Query: 177 HSLGSTNVLIATSLRPEYQAK 197
HS+G L + P+
Sbjct: 49 HSMGGLIALAYAAKYPDRVKA 69
>gnl|CDD|153138 cd06350, PBP1_GPCR_family_C_like, Ligand-binding domain of
membrane-bound glutamate receptors that mediate
excitatory transmission on the cellular surface through
initial binding of glutamate and are categorized into
ionotropic glutamate receptors (iGluRs) and metabotropic
glutamate receptors (mGluRs). Ligand-binding domain of
membrane-bound glutamate receptors that mediate
excitatory transmission on the cellular surface through
initial binding of glutamate and are categorized into
ionotropic glutamate receptors (iGluRs) and metabotropic
glutamate receptors (mGluRs). The metabotropic glutamate
receptors (mGluR) are key receptors in the modulation of
excitatory synaptic transmission in the central nervous
system. The mGluRs are coupled to G proteins and are
thus distinct from the iGluRs which internally contain
ligand-gated ion channels. The mGluR structure is
divided into three regions: the extracellular region,
the seven-spanning transmembrane region and the
cytoplasmic region. The extracellular region is further
devided into the ligand-binding domain (LBD) and the
cysteine-rich domain. The LBD has sequence similarity to
the LIVBP, which is a bacterial periplasmic protein
(PBP), as well as to the extracellular region of both
iGluR and the gamma-aminobutyric acid (GABA)b receptor.
iGluRs are divided into three main subtypes based on
pharmacological profile: NMDA, AMPA, and kainate
receptors. All family C GPCRs have a large extracellular
N terminus that contain a domain with homology to
bacterial periplasmic amino acid-binding proteins.
Length = 348
Score = 39.7 bits (93), Expect = 9e-04
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 4 ISNIDDTDYHCNKTQVRKVISGVVGAASSVTSIQVANLLRLFKIPQ 49
+ + + T + + KV+ V+G SS S+ VA LL LFKIPQ
Sbjct: 74 LLSGEGTTPPYSCRKQPKVV-AVIGPGSSSVSMAVAELLGLFKIPQ 118
>gnl|CDD|225176 COG2267, PldB, Lysophospholipase [Lipid metabolism].
Length = 298
Score = 38.5 bits (90), Expect = 0.002
Identities = 33/139 (23%), Positives = 51/139 (36%), Gaps = 19/139 (13%)
Query: 61 EEHKVTTKDGYILT--NFRIPNPGGYPLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRGYD 118
E T DG L + P P ++ +HGL S GR ++ L RG+D
Sbjct: 10 TEGYFTGADGTRLRYRTWAAPEPPKGVVVLVHGLGEHS----GR--YEELADDLAARGFD 63
Query: 119 IWLWNARGNLYSREHVNLTTKQSKFYQFSYHEMGLYDTPALIDYILAETGHKTLITLGHS 178
++ + RG+ S + Y + D A ++ I + LGHS
Sbjct: 64 VYALDLRGHGRSPRG---QRGHVDSFAD-YVD----DLDAFVETIAEPDPGLPVFLLGHS 115
Query: 179 LGSTNVLIATSLRPEYQAK 197
+G LIA Y +
Sbjct: 116 MGG---LIALLYLARYPPR 131
>gnl|CDD|216296 pfam01094, ANF_receptor, Receptor family ligand binding region.
This family includes extracellular ligand binding
domains of a wide range of receptors. This family also
includes the bacterial amino acid binding proteins of
known structure.
Length = 343
Score = 37.4 bits (87), Expect = 0.004
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 8/52 (15%)
Query: 6 NIDDTDYHCNKTQVRKV--------ISGVVGAASSVTSIQVANLLRLFKIPQ 49
+D D + V + V+G + S +I VA L F IP
Sbjct: 26 GYEDDDTCDDSFAVAAAACLLKSKGVVAVIGPSCSSVAIAVARLAGAFGIPM 77
>gnl|CDD|153137 cd06269, PBP1_glutamate_receptors_like, Family C G-protein
couples receptors (GPCRs), membrane bound guanylyl
cyclases such as the family of natriuretic peptide
receptors (NPRs), and the N-terminal
leucine/isoleucine/valine- binding protein
(LIVBP)-like domain of the ionotropic glutamate
receptors. This CD represents the ligand-binding
domain of the family C G-protein couples receptors
(GPCRs), membrane bound guanylyl cyclases such as the
family of natriuretic peptide receptors (NPRs), and the
N-terminal leucine/isoleucine/valine- binding protein
(LIVBP)-like domain of the ionotropic glutamate
receptors, all of which are structurally similar and
related to the periplasmic-binding fold type I family.
The family C GPCRs consist of metabotropic glutamate
receptor (mGluR) receptors, a calcium-sensing receptor
(CaSR), gamma-aminobutyric receptors (GABAb), the
promiscuous L-alpha-amino acid receptor GPR6A, families
of taste and pheromone receptors, and orphan receptors.
Truncated splicing variants of the orphan receptors are
not included in this CD. The family C GPCRs are
activated by endogenous agonists such as amino acids,
ions, and sugar based molecules. Their amino terminal
ligand-binding region is homologous to the bacterial
leucine-isoleucine-valine binding protein (LIVBP) and a
leucine binding protein (LBP). The ionotropic glutamate
receptors (iGluRs) have an integral ion channel and are
subdivided into three major groups based on their
pharmacology and structural similarities: NMDA
receptors, AMPA receptors, and kainate receptors. The
family of membrane bound guanylyl cyclases is further
divided into three subfamilies: the ANP receptor
(GC-A)/C-type natriuretic peptide receptor (GC-B), the
heat-stable enterotoxin receptor (GC-C)/sensory organ
specific membrane GCs such as retinal receptors (GC-E,
GC-F), and olfactory receptors (GC-D and GC-G).
Length = 298
Score = 36.0 bits (83), Expect = 0.013
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 14 CNKTQVRKVISGVVGAASSVTSIQVANLLRLFKIPQ 49
C+ + + + V+G +SS ++ VA+LL IPQ
Sbjct: 63 CSLLEKSRGVVAVIGPSSSSSAEAVASLLGALHIPQ 98
>gnl|CDD|107359 cd06364, PBP1_CaSR, Ligand-binding domain of the CaSR
calcium-sensing receptor, which is a member of the
family C receptors within the G-protein coupled receptor
superfamily. Ligand-binding domain of the CaSR
calcium-sensing receptor, which is a member of the
family C receptors within the G-protein coupled receptor
superfamily. CaSR provides feedback control of
extracellular calcium homeostasis by responding
sensitively to acute fluctuations in extracellular
ionized Ca2+ concentration. This ligand-binding domain
has homology to the bacterial leucine-isoleucine-valine
binding protein (LIVBP) and a leucine binding protein
(LBP). CaSR is widely expressed in mammalian tissues and
is active in tissues that are not directly involved in
extracellular calcium homeostasis. Moreover, CaSR
responds to aromatic, aliphatic, and polar amino acids,
but not to positively charged or branched chain amino
acids, which suggests that changes in plasma amino acid
levels are likely to modulate whole body calcium
metabolism. Additionally, the family C GPCRs includes at
least two receptors with broad-spectrum amino
acid-sensing properties: GPRC6A which recognizes basic
and various aliphatic amino acids, its gold-fish homolog
the 5.24 chemoreceptor, and a specific taste receptor
(T1R) which responds to aliphatic, polar, charged, and
branched amino acids, but not to aromatic amino acids.
Length = 510
Score = 35.0 bits (80), Expect = 0.030
Identities = 19/39 (48%), Positives = 21/39 (53%)
Query: 11 DYHCNKTQVRKVISGVVGAASSVTSIQVANLLRLFKIPQ 49
D CN ++ VVGA S S VANLL LF IPQ
Sbjct: 107 DEFCNCSEHIPSTIAVVGATGSGVSTAVANLLGLFYIPQ 145
>gnl|CDD|227099 COG4757, COG4757, Predicted alpha/beta hydrolase [General function
prediction only].
Length = 281
Score = 34.4 bits (79), Expect = 0.037
Identities = 30/122 (24%), Positives = 42/122 (34%), Gaps = 12/122 (9%)
Query: 60 AEEHKVTTKDGYILTNFRIPNPGGYP-LLFLHGLTSSSDCFLGRNPSVDIVFLLWKRGYD 118
A E + DGY L R P G L + G T F R K G++
Sbjct: 5 ATEAHLPAPDGYSLPGQRFPADGKASGRLVVAGATGVGQYFYRR-----FAAAAAKAGFE 59
Query: 119 IWLWNARGNLYSREHVNLTTKQSKFYQFSYHEMGLYDTPALIDYILAETGHKTLITLGHS 178
+ ++ RG SR Q+ Y + D PA + + L +GHS
Sbjct: 60 VLTFDYRGIGQSR------PASLSGSQWRYLDWARLDFPAALAALKKALPGHPLYFVGHS 113
Query: 179 LG 180
G
Sbjct: 114 FG 115
>gnl|CDD|107360 cd06365, PBP1_Pheromone_receptor, Ligand-binding domain of the V2R
phermone receptor, a member of the family C receptors
within the G-protein coupled receptor superfamily.
Ligand-binding domain of the V2R phermone receptor, a
member of the family C receptors within the G-protein
coupled receptor superfamily, which also includes the
metabotropic glutamate receptor, the GABAb receptor, the
calcium-sensing receptor (CaSR), the T1R taste receptor,
and a small group of uncharacterized orphan receptors.
Length = 469
Score = 34.1 bits (79), Expect = 0.054
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 12 YHCNKTQVRKVISGVVGAASSVTSIQVANLLRLFKIPQ 49
Y C + RK V+G S S +A LL L+K PQ
Sbjct: 96 YSCRRQ--RK-SVAVIGGPSWALSATIATLLGLYKFPQ 130
>gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family. This family
contains a diverse range of alpha/beta hydrolase
enzymes.
Length = 145
Score = 32.7 bits (75), Expect = 0.075
Identities = 18/109 (16%), Positives = 34/109 (31%), Gaps = 30/109 (27%)
Query: 85 PLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRGYDIWLWNARGNLYSREHVNLTTKQSKFY 144
++ LHG + + + L RGY++ + G+ S
Sbjct: 1 LVVLLHGAGGDPEAY------APLARALASRGYNVVAVDYPGHGASL------------- 41
Query: 145 QFSYHEMGLYDTPALIDYI-LAETGHKTLITLGHSLGSTNVLIATSLRP 192
P + A + ++ +GHSLG L+ + P
Sbjct: 42 ----------GAPDAEAVLADAPLDPERIVLVGHSLGGGVALLLAARDP 80
>gnl|CDD|107356 cd06361, PBP1_GPC6A_like, Ligand-binding domain of the promiscuous
L-alpha-amino acid receptor GPRC6A which is a
broad-spectrum amino acid-sensing receptor. This family
includes the ligand-binding domain of the promiscuous
L-alpha-amino acid receptor GPRC6A which is a
broad-spectrum amino acid-sensing receptor, and its fish
homolog, the 5.24 chemoreceptor. GPRC6A is a member of
the family C of G-protein-coupled receptors that
transduce extracellular signals into G-protein
activation and ultimately into cellular responses.
Length = 403
Score = 32.5 bits (74), Expect = 0.16
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 8 DDTDYHCNKTQVRKVISGVVGAASSVTSIQVANLLRLFKIPQ 49
++ C+ +Q I V+GA S S+ V+ +L L IPQ
Sbjct: 89 STVEFKCDYSQYVPRIKAVIGAGYSEISMAVSRMLNLQLIPQ 130
>gnl|CDD|225783 COG3243, PhaC, Poly(3-hydroxyalkanoate) synthetase [Lipid
metabolism].
Length = 445
Score = 32.3 bits (74), Expect = 0.19
Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 15/115 (13%)
Query: 79 PNPGGYPLLFLHGLTSSSDCF-LGRNPSVDIVFLLWKRGYDIWLWNARGNLYSREHVNLT 137
PLL + + L S +V L ++G D+++ + R S NL
Sbjct: 103 EKVLKRPLLIVPPWINKFYILDLSPEKS--LVRWLLEQGLDVFVISWRNPDASLAAKNLE 160
Query: 138 TKQSKFYQFSYHEMGLYDTPALIDYILAETGHKTLITLGHSLGSTNVLIATSLRP 192
Y GL + ID + TG K + +G+ +G T + A +L
Sbjct: 161 D---------YILEGLSEA---IDTVKDITGQKDINLIGYCVGGTLLAAALALMA 203
>gnl|CDD|214009 cd12810, Esterase_713_like-3, Uncharacterized enzymes similar to
novel bacterial esterase that cleaves esters on
halogenated cyclic compounds. This family contains
uncharacterized proteins similar to a novel bacterial
esterase (Alcaligenes esterase 713) with the alpha/beta
hydrolase fold but does not contain the GXSXXG
pentapeptide around the active site serine residue as
commonly seen in other enzymes of this class. Esterase
713 shows negligible sequence homology to other esterase
and lipase enzymes. It is active as a dimer and cleaves
esters on halogenated cyclic compounds though its
natural substrate is unknown.
Length = 328
Score = 31.8 bits (73), Expect = 0.25
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
Query: 76 FRIP-NPGGYPLLFLHGLTSSSDCFL----GRNPSVDIVFLLWKRGYDIWLWNA--RGN 127
++IP N PL+FLHG S + GR I FL ++GY ++L + RG
Sbjct: 45 YQIPVNARKLPLVFLHGAGQSGKTWETTPDGREGFQTI-FL--RKGYPVYLVDQPRRGR 100
>gnl|CDD|193548 cd05673, M20_Acy1L2_AbgB, M20 Peptidase Aminoacylase 1-like protein
2 aminobenzoyl-glutamate utilization protein B
subfamily. Peptidase M20 family, ACY1L2
aminobenzoyl-glutamate utilization protein B (AbgB)
subfamily. This group contains mostly bacterial
amidohydrolases, including gene products of abgB that
catalyze the cleavage of p-aminobenzoyl-glutamate, a
folate catabolite in Escherichia coli, to
p-aminobenzoate and glutamate. p-Aminobenzoyl-glutamate
is a natural end product of folate catabolism, and its
utilization is initiated by the abg region gene product,
AbgT, by enabling uptake of its into the cell in a
concentration-dependent, saturable manner. It is
subsequently cleaved by AbgA and AbgB (sometimes
referred to as AbgAB).
Length = 434
Score = 31.4 bits (72), Expect = 0.44
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 28 GAASSVTSIQVANLLRLFKIPQTEIIRYWGYPAEE 62
GA S +I V + + T IR++G PAEE
Sbjct: 104 GAGSLAAAIAVKEYMEEHGLKGT--IRFYGCPAEE 136
>gnl|CDD|193508 cd03887, M20_Acy1L2, M20 Peptidase Aminoacylase 1-like protein 2,
amidohydrolase family. Peptidase M20 family,
Aminoacylase 1-like protein 2 (ACY1L2; amidohydrolase)
subfamily. This group contains many uncharacterized
proteins predicted as amidohydrolases, including gene
products of abgA and abgB that catalyze the cleavage of
p-aminobenzoyl-glutamate, a folate catabolite in
Escherichia coli, to p-aminobenzoate and glutamate.
p-Aminobenzoyl-glutamate utilization is catalyzed by the
abg region gene product, AbgT. Aminoacylase 1 (ACY1)
proteins are a class of zinc binding homodimeric enzymes
involved in hydrolysis of N-acetylated proteins.
N-terminal acetylation of proteins is a widespread and
highly conserved process that is involved in the
protection and stability of proteins. Several types of
aminoacylases can be distinguished on the basis of
substrate specificity. ACY1 breaks down cytosolic
aliphatic N-acyl-alpha-amino acids (except L-aspartate),
especially N-acetyl-methionine and acetyl-glutamate into
L-amino acids and an acyl group. However, ACY1 can also
catalyze the reverse reaction, the synthesis of
acetylated amino acids. ACY1 may also play a role in
xenobiotic bioactivation as well as the inter-organ
processing of amino acid-conjugated xenobiotic
derivatives (S-substituted-N-acetyl-L-cysteine).
Length = 358
Score = 30.2 bits (69), Expect = 1.0
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 28 GAASSVTSIQVANLLRLFKIPQTEIIRYWGYPAEEH---KVT-TKDGY 71
GAAS ++ + L +P T +R +G PAEE KV + G
Sbjct: 87 GAASLGAALALKKALEELGLPGT--VRVYGTPAEEGGGGKVEMARAGA 132
>gnl|CDD|112235 pfam03410, Peptidase_M44, Protein G1. Protein G1, named after the
vaccinia virus protein, is a glycoprotein expressed by
many Poxviridae.
Length = 590
Score = 29.0 bits (65), Expect = 2.6
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 94 SSSDCFLGRNPSVDIVFLLWKRGYDIWLWNARGNLYSREHVNLTTKQSKFYQFSY 148
SS C + R P + L +W +G +YS E L K + FY F++
Sbjct: 497 SSFVCGILRGPRLSEAALTRA----MWELKRKGLIYSLEFTRLHAKNT-FYLFAF 546
>gnl|CDD|239875 cd04412, NDPk7B, Nucleoside diphosphate kinase 7 domain B (NDPk7B):
The nm23-H7 class of nucleoside diphosphate kinase
(NDPk7) consists of an N-terminal DM10 domain and two
functional catalytic NDPk modules, NDPk7A and NDPk7B.
The function of the DM10 domain, which also occurs in
multiple copies in other proteins, is unknown. NDPk7 is
predominantly expressed in testes, although appreciable
amount are also found in liver, heart, brain, ovary,
small intestine and spleen. The nm23-H7 gene is located
in or near the hereditary prostrate cancer
susceptibility locus. Nm23-H7 may be involved in the
development of colon and gastric carcinoma, the latter
possibly in a type-specific manner.
Length = 134
Score = 28.0 bits (63), Expect = 2.7
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 208 VLEI-GKNQDRSLRKVCGPKSPVV 230
LEI G+N ++ R+ CGP P +
Sbjct: 72 ALEIAGENAVKTFREFCGPFDPEI 95
>gnl|CDD|130316 TIGR01249, pro_imino_pep_1, proline iminopeptidase, Neisseria-type
subfamily. This model represents one of two related
families of proline iminopeptidase in the alpha/beta
fold hydrolase family. The fine specificities of the
various members, including both the range of short
peptides from which proline can be removed and whether
other amino acids such as alanine can be also removed,
may vary among members.
Length = 306
Score = 28.3 bits (63), Expect = 4.0
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 80 NPGGYPLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRGYDIWLWNARGNLYSREHVNLT 137
NP G P++FLHG S G +P F Y I L++ RG S H L
Sbjct: 24 NPDGKPVVFLHGGPGS-----GTDPGCRRFFDPET--YRIVLFDQRGCGKSTPHACLE 74
>gnl|CDD|237919 PRK15193, PRK15193, outer membrane usher protein; Provisional.
Length = 876
Score = 28.3 bits (63), Expect = 4.0
Identities = 12/19 (63%), Positives = 12/19 (63%)
Query: 169 HKTLITLGHSLGSTNVLIA 187
H ITL LG TNVLIA
Sbjct: 702 HSQGITLSQPLGETNVLIA 720
>gnl|CDD|107261 cd04509, PBP1_ABC_transporter_GCPR_C_like, Family C of G-protein
coupled receptors and their close homologs, the type I
periplasmic-binding proteins of ATP-binding cassette
transporter-like systems. This CD includes members of
the family C of G-protein coupled receptors and their
close homologs, the type I periplasmic-binding proteins
of ATP-binding cassette transporter-like systems. The
family C GPCR includes glutamate/glycine-gated ion
channels such as the NMDA receptor, G-protein-coupled
receptors, metabotropic glutamate, GABA-B, calcium
sensing, phermone receptors, and atrial natriuretic
peptide-guanylate cyclase receptors. The glutamate
receptors that form cation-selective ion channels,
iGluR, can be classified into three different subgroups
according to their binding-affinity for the agonists
NMDA (N-methyl-D-asparate), AMPA
(alpha-amino-3-dihydro-5-methyl-3-oxo-4-
isoxazolepropionic acid), and kainate. L-glutamate is a
major neurotransmitter in the brain of vertebrates and
acts through either mGluRs or iGluRs. mGluRs subunits
possess seven transmembrane segments and a large
N-terminal extracellular domain. ABC-type
leucine-isoleucine-valine-binding protein (LIVBP) is a
bacterial periplasmic binding protein that has homology
with the amino-terminal domain of the glutamate-receptor
ion channels (iGluRs). The extracellular regions of
iGluRs are made of two PBP-like domains in tandem, a
LIVBP-like domain that constitutes the N terminus -
which is included in this CD - followed by a domain
related to lysine-arginine-ornithine-binding protein
(LAOBP) that belongs to the type II periplasmic binding
fold protein superfamily. The uncharacterized
periplasmic components of various ABC-type transport
systems are included in this group.
Length = 299
Score = 28.2 bits (63), Expect = 4.3
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 23 ISGVVGAASSVTSIQVANLLRLFKIPQTEIIRYWGYPAEEHKVTTKDGY 71
+ +VG SS ++ VA + KIP A +T K GY
Sbjct: 68 VDALVGPVSSGVALAVAPVAEALKIPL------ISPGATAPGLTDKKGY 110
>gnl|CDD|225375 COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily
[General function prediction only].
Length = 264
Score = 28.1 bits (63), Expect = 4.4
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 11/59 (18%)
Query: 70 GYILTNFRIPNPGGYPLLFLH-------GLTSSSDCFLGRNPSVDIVFLLWKRGYDIWL 121
+I T P PGGYP+L++ LT L P IV + GY+ L
Sbjct: 25 IFIATPKNYPKPGGYPVLYMLDGNAVFNALTEIMLRILADLPPPVIVGI----GYETIL 79
>gnl|CDD|163673 cd08166, MPP_Cdc1_like_1, uncharacterized subgroup related to
Saccharomyces cerevisiae CDC1, metallophosphatase
domain. A functionally uncharacterized subgroup related
to the metallophosphatase domain of Saccharomyces
cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1.
Cdc1 is an endoplasmic reticulum-localized transmembrane
lipid phosphatase and is a subunit of DNA polymerase
delta. TED1 (trafficking of Emp24p/Erv25p-dependent
cargo disrupted 1), acts together with Emp24p and Erv25p
in cargo exit from the ER. The MPPE1 gene is a
candidate susceptibility gene for Bipolar disorder.
Proteins in this uncharacterized subgroup belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 195
Score = 27.3 bits (61), Expect = 6.2
Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 9/79 (11%)
Query: 133 HVNLTTKQSKFYQFSYHEMGLYDTPALIDYILAETGHKTLITLGHSLGSTNVLIATSLRP 192
HV L + Q H + D D I + HK+ I + L N L
Sbjct: 116 HVPLLAEG---GQALKHVVTDLD----PDLIFSAHRHKSSIFMYDRLLRQNSLFTRVSPD 168
Query: 193 EYQAKRWIFDGNTQSVLEI 211
+ K+ I + + EI
Sbjct: 169 DPTLKQLIL--QNEVMHEI 185
>gnl|CDD|183021 PRK11181, PRK11181, 23S rRNA (guanosine-2'-O-)-methyltransferase;
Provisional.
Length = 244
Score = 27.2 bits (61), Expect = 8.0
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 19 VRKVISGVVGAASSVTSIQVANLLRLFKIPQ 49
+KV G AA +V I+V NL R ++ Q
Sbjct: 138 AKKVACG---AAETVPLIRVTNLARTMRMLQ 165
>gnl|CDD|219891 pfam08538, DUF1749, Protein of unknown function (DUF1749). This is
a plant and fungal family of unknown function. This
family contains many hypothetical proteins.
Length = 303
Score = 27.4 bits (61), Expect = 8.4
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 158 ALIDYILAETGHKT----LITLGHSLGSTNVL 185
AL++Y+ G ++ +GHS GS +V+
Sbjct: 93 ALVEYLRTTKGGTFGRRKIVLMGHSTGSQDVM 124
>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated.
Length = 557
Score = 27.3 bits (61), Expect = 9.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 55 YWGYPAEEHKVTTKDGYILT 74
YW P E KV T DG+ T
Sbjct: 420 YWNRPDETAKVMTADGFFRT 439
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.418
Gapped
Lambda K H
0.267 0.0673 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,372,594
Number of extensions: 1141014
Number of successful extensions: 998
Number of sequences better than 10.0: 1
Number of HSP's gapped: 992
Number of HSP's successfully gapped: 39
Length of query: 250
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 155
Effective length of database: 6,723,972
Effective search space: 1042215660
Effective search space used: 1042215660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)