RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5149
(250 letters)
>1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold,
hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus
familiaris} SCOP: c.69.1.6 PDB: 1hlg_A*
Length = 377
Score = 181 bits (461), Expect = 1e-55
Identities = 62/160 (38%), Positives = 91/160 (56%), Gaps = 8/160 (5%)
Query: 50 TEIIRYWGYPAEEHKVTTKDGYILTNFRIPNP--------GGYPLLFLHGLTSSSDCFLG 101
+++I YWGYPAEE++V T+DGYIL RIP HGL +S+ ++
Sbjct: 17 SQMITYWGYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWIS 76
Query: 102 RNPSVDIVFLLWKRGYDIWLWNARGNLYSREHVNLTTKQSKFYQFSYHEMGLYDTPALID 161
P+ + F+L GYD+WL N+RGN ++R ++ + +F+ FS+ EM YD PA ID
Sbjct: 77 NLPNNSLAFILADAGYDVWLGNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATID 136
Query: 162 YILAETGHKTLITLGHSLGSTNVLIATSLRPEYQAKRWIF 201
+IL +TG L +GHS G+T IA S P+ + F
Sbjct: 137 FILKKTGQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTF 176
>2rau_A Putative esterase; NP_343859.1, putative lipase, structural
genomics, joint CEN structural genomics, JCSG; HET: PG4
UNL; 1.85A {Sulfolobus solfataricus P2}
Length = 354
Score = 58.8 bits (141), Expect = 2e-10
Identities = 22/132 (16%), Positives = 46/132 (34%), Gaps = 8/132 (6%)
Query: 63 HKVTTKDGYILTNFRIPNPG--GYPLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRGYDIW 120
HKV G +P G L+ + + IV L + G++++
Sbjct: 41 HKVNLIGGGNDAVLILPGTWSSGEQLVTISWNGVHYTIP---DYRKSIVLYLARNGFNVY 97
Query: 121 LWNARGNLYSREHVNLTTKQSKFYQFSYHEMGLYDTPALIDYILAETGHKTLITLGHSLG 180
+ R + + + + +S + D ++ +I ++G + + G S G
Sbjct: 98 TIDYRTHYVPPFLKDRQLSFTANWGWSTW---ISDIKEVVSFIKRDSGQERIYLAGESFG 154
Query: 181 STNVLIATSLRP 192
L +SL
Sbjct: 155 GIAALNYSSLYW 166
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor,
neuron, central nerve system, SI protein; HET: NAG GLU;
2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A*
2e4y_A*
Length = 555
Score = 55.2 bits (133), Expect = 5e-09
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 6/54 (11%)
Query: 2 GSISNIDDTDYHCN------KTQVRKVISGVVGAASSVTSIQVANLLRLFKIPQ 49
S++ +D+ +Y C + + +I+GV+G + S SIQVANLLRLF+IPQ
Sbjct: 91 ASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQ 144
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics,
structural genomics consortium, SGC, CE membrane,
G-protein coupled receptor; HET: Z99; 2.26A {Homo
sapiens}
Length = 479
Score = 53.3 bits (128), Expect = 2e-08
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 6/54 (11%)
Query: 2 GSISNIDDTDYHCNK------TQVRKVISGVVGAASSVTSIQVANLLRLFKIPQ 49
S++ +D+ +Y C + +I+GV+G + S SIQVANLLRLF+IPQ
Sbjct: 90 ASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQ 143
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors,
dimerization, glutamic acid BIN structural genomics,
structural genomics consortium; HET: Z99 NAG; 1.90A
{Homo sapiens} PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A*
1iss_A* 3lmk_A*
Length = 496
Score = 48.3 bits (115), Expect = 8e-07
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 11 DYHC-NKTQVRKVISGVVGAASSVTSIQVANLLRLFKIPQ 49
D + +K I+GV+G SS +IQV NLL+LF IPQ
Sbjct: 116 DGQSLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQ 155
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors,
dimerization, glutamic acid BIN structural genomics,
structural genomics consortium; HET: Z99; 2.80A {Homo
sapiens} PDB: 2e4z_A*
Length = 481
Score = 47.5 bits (113), Expect = 1e-06
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 11 DYHCNKTQV-----RKVISGVVGAASSVTSIQVANLLRLFKIPQ 49
D C + + + GV+GA+ S SI VAN+LRLF+IPQ
Sbjct: 101 DVRCTNGEPPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQ 144
>1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida
antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A*
1tcc_A*
Length = 317
Score = 46.3 bits (109), Expect = 3e-06
Identities = 19/121 (15%), Positives = 33/121 (27%), Gaps = 21/121 (17%)
Query: 78 IPNPGGYPLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRGYDIWLWNARGNLYSREHVNLT 137
P+ P+L + G ++ N + L + GY + L
Sbjct: 26 SPSSVSKPILLVPGTGTTGPQSFDSN----WIPLSTQLGYTPCWISPPPF-------MLN 74
Query: 138 TKQSKFYQFSYHEMGLYDTPALIDYILAETGHKTLITLGHSLGSTNVLIATSLRPEYQAK 197
Q I + A +G+ L L S G + P ++K
Sbjct: 75 DTQVNTEYMVNA----------ITALYAGSGNNKLPVLTWSQGGLVAQWGLTFFPSIRSK 124
Query: 198 R 198
Sbjct: 125 V 125
>1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13
Length = 305
Score = 46.2 bits (109), Expect = 3e-06
Identities = 19/136 (13%), Positives = 41/136 (30%), Gaps = 21/136 (15%)
Query: 62 EHKVTTKDGYILTNFRIPNPGGYP-----LLFLHGLTSSSDCFLGRNPSVDIVFLLWKRG 116
H + +G L + P P +L G D F G + L G
Sbjct: 9 AHVLRVNNGQELHVWETPPKENVPFKNNTILIASGFARRMDHFAG------LAEYLSTNG 62
Query: 117 YDIWLWNARGNLYSREHVNLTTKQSKFYQFSYHEMGLYDTPALIDYILAETGHKTLITLG 176
+ ++ +++ HV L++ +F+ + ++ + + +
Sbjct: 63 FHVFRYDSLH------HVGLSSG--SIDEFTMTTG-KNSLCTVYHWLQTKGTQNIGL-IA 112
Query: 177 HSLGSTNVLIATSLRP 192
SL + S
Sbjct: 113 ASLSARVAYEVISDLE 128
>2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase,
biodegradation, catal; HET: PG4; 1.20A {Paucimonas
lemoignei} PDB: 2vtv_A* 2x76_A
Length = 342
Score = 45.7 bits (107), Expect = 6e-06
Identities = 24/137 (17%), Positives = 41/137 (29%), Gaps = 15/137 (10%)
Query: 57 GYPAEEHKVTTKDGYILT------NFRIPNPGGYPLLFLHGLTSSSDCFLGRNPSVDIVF 110
G+ + + G+ P++F+HG ++ F +V
Sbjct: 8 GFVCKGTQTQYAGGFAPGVGYGGFGGGSCTATKTPVIFIHGNGDNAISFDMPPGNVSGYG 67
Query: 111 LLWKRGYDIWLWNARGNLYSREHVNLTTKQSKFYQFSYHEMG-----LYDTPALIDYILA 165
ARG Y+ + T S Q S ID + A
Sbjct: 68 TPA--RSVYAELKARG--YNDCEIFGVTYLSSSEQGSAQYNYHSSTKYAIIKTFIDKVKA 123
Query: 166 ETGHKTLITLGHSLGST 182
TG + + HS+G +
Sbjct: 124 YTGKSQVDIVAHSMGVS 140
>2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase,
putative lipase; HET: CME CSO; 1.90A {Saccharomyces
cerevisiae} PDB: 2y6v_A*
Length = 398
Score = 45.5 bits (107), Expect = 6e-06
Identities = 18/130 (13%), Positives = 37/130 (28%), Gaps = 14/130 (10%)
Query: 79 PNPGGYPLLFLHGLTSSSDCFLGRNPSVDIVFLLWK----RGYDIWLWNARGNLYSREHV 134
L+FLHG S + + + + L + + S
Sbjct: 48 RTATRLNLVFLHGSGMSKVVW---EYYLPRLVAADAEGNYAIDKVLLIDQVNHGDS---- 100
Query: 135 NLTTKQSKFYQFSYHEMGLYDTPALIDYILAETGHKT--LITLGHSLGSTNVLIATSLRP 192
+ + F++ + D + L + +GHS+G L L+P
Sbjct: 101 AVRNRGRLGTNFNWIDGA-RDVLKIATCELGSIDSHPALNVVIGHSMGGFQALACDVLQP 159
Query: 193 EYQAKRWIFD 202
+ +
Sbjct: 160 NLFHLLILIE 169
>3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic
residues, glycoprotein, hydrolase, lipid degradation,
zymogen, disulf; HET: NAG BTB; 1.49A {Candida
antarctica} PDB: 3icw_A*
Length = 316
Score = 45.2 bits (106), Expect = 9e-06
Identities = 19/121 (15%), Positives = 33/121 (27%), Gaps = 21/121 (17%)
Query: 78 IPNPGGYPLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRGYDIWLWNARGNLYSREHVNLT 137
P+ P+L + G ++ N + L + GY + L
Sbjct: 60 SPSSVSKPILLVPGTGTTGPQSFDSN----WIPLSAQLGYTPCWISPPPF-------MLN 108
Query: 138 TKQSKFYQFSYHEMGLYDTPALIDYILAETGHKTLITLGHSLGSTNVLIATSLRPEYQAK 197
Q I + A +G+ L L S G + P ++K
Sbjct: 109 DTQVNTEYMVNA----------ITTLYAGSGNNKLPVLTWSQGGLVAQWGLTFFPSIRSK 158
Query: 198 R 198
Sbjct: 159 V 159
>2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A
{Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A*
Length = 484
Score = 44.9 bits (105), Expect = 1e-05
Identities = 23/140 (16%), Positives = 43/140 (30%), Gaps = 19/140 (13%)
Query: 77 RIPNPGGYPLLFLHGLTSSSDCFLGRNP-------------------SVDIVFLLWKRGY 117
P++F+HGL S+ F + + + +
Sbjct: 16 VAAAEDFRPVVFVHGLAGSAGQFESQGMRFAANGYPAEYVKTFEYDTISWALVVETDMLF 75
Query: 118 DIWLWNARGNLYSREHVNLTTKQSKFYQFSYHEMGLYDTPALIDYILAETGHKTLITLGH 177
N+ K + + +ID LAE+G + +GH
Sbjct: 76 SGLGSEFGLNISQIIDPETLDKILSKSRERLIDETFSRLDRVIDEALAESGADKVDLVGH 135
Query: 178 SLGSTNVLIATSLRPEYQAK 197
S+G+ ++ + PE AK
Sbjct: 136 SMGTFFLVRYVNSSPERAAK 155
>2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase;
alpha/beta hydrolase, META-cleavage pathway; 2.1A
{Arthrobacter nicotinovorans} SCOP: c.69.1.41
Length = 386
Score = 44.6 bits (105), Expect = 1e-05
Identities = 32/148 (21%), Positives = 53/148 (35%), Gaps = 22/148 (14%)
Query: 53 IRYWGYPAEEHKVTTKDGYILTNFRIP-NPGGYP-LLFLHGLTSSSDCFLGRNPSVDIVF 110
PAE H++ + RIP PG +P ++ L GL S+ + S +
Sbjct: 120 APLLSPPAERHELVVDGIPMPVYVRIPEGPGPHPAVIMLGGLEST------KEESFQMEN 173
Query: 111 LLWKRGYDIWLWNARGNLYSREHVNLTTKQSKFYQFSYHEMGLYDTPALIDYILAETG-- 168
L+ RG ++ G E+ + K T A++D +
Sbjct: 174 LVLDRGMATATFDGPGQGEMFEYKRIAGDYEK------------YTSAVVDLLTKLEAIR 221
Query: 169 HKTLITLGHSLGSTNVLIATSLRPEYQA 196
+ + LG SLG L + + P A
Sbjct: 222 NDAIGVLGRSLGGNYALKSAACEPRLAA 249
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase,
cinnamoyl/Fe esterase, hydroxycinammates, extracellular;
HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A*
3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Length = 270
Score = 44.0 bits (104), Expect = 1e-05
Identities = 22/138 (15%), Positives = 47/138 (34%), Gaps = 16/138 (11%)
Query: 58 YPAEEHKVTTKDGYILT-NFRIPNPGGYPL-LFLHGLTSSSDCFLGRNPSVDIVFLLWKR 115
+ +DG L P Y + + HG T++ + + +I L
Sbjct: 19 FQGMATITLERDGLQLVGTREEPFGEIYDMAIIFHGFTANRN----TSLLREIANSLRDE 74
Query: 116 GYDIWLWNARGNLYSREHVNLTTKQSKFYQFSYHEMGLYDTPALIDYILAETGHKTLITL 175
++ G+ S KF + + D A+++Y+ + + + +
Sbjct: 75 NIASVRFDFNGHGDS---------DGKFENMTVLNE-IEDANAILNYVKTDPHVRNIYLV 124
Query: 176 GHSLGSTNVLIATSLRPE 193
GH+ G + L P+
Sbjct: 125 GHAQGGVVASMLAGLYPD 142
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 2e-05
Identities = 46/227 (20%), Positives = 66/227 (29%), Gaps = 69/227 (30%)
Query: 60 AEEHKVTTKDGYILTNFRIPNPGGYPLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRGYDI 119
A+ H T G+ + + I NP + F G G+ + ++++ D
Sbjct: 1649 ADNHFKDTY-GFSILDIVINNPVNLTIHF--GGEK------GKRIRENYSAMIFETIVD- 1698
Query: 120 WLWNARGNLYSREHVNLTTKQSKFYQFSYHEMG-LYDT----PAL--IDY-ILAETGHKT 171
G L + + + S Y F E G L T PAL ++ + K
Sbjct: 1699 ------GKLKTEKIFKEINEHSTSYTFR-SEKGLLSATQFTQPALTLMEKAAFEDLKSKG 1751
Query: 172 LITL-----GHSLGSTNVLIATSLRPEYQA------------------KRWIFDGNTQSV 208
LI GHSLG EY A R G T V
Sbjct: 1752 LIPADATFAGHSLG------------EYAALASLADVMSIESLVEVVFYR----GMTMQV 1795
Query: 209 LEIGKNQDRSLRKVCG--PKSPVVKICMTILALV---SGFQSNQTVE 250
RS + P L V G ++ VE
Sbjct: 1796 AVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVE 1842
Score = 35.8 bits (82), Expect = 0.013
Identities = 33/231 (14%), Positives = 67/231 (29%), Gaps = 63/231 (27%)
Query: 10 TDYHCNKTQVRKVISGVVGAASSVTS-----IQVANLLRLFKIPQTEIIRYWGYPA---E 61
T +Q+++ + ++ + + A L+ ++ GY + E
Sbjct: 24 TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV----------GKFLGYVSSLVE 73
Query: 62 EHKVTTKDG---YILTNFRIPNPGGYPLLFL-----HGLTSSSDCFLGRNPSVDIVFLLW 113
KV D LT F +L H L + L N + +
Sbjct: 74 PSKVGQFDQVLNLCLTEFENC--------YLEGNDIHALAAK---LLQENDTTLVKTKEL 122
Query: 114 KRGYDIWLWNARGNL---YSREHVNL-----TTKQSKFY-QF-------SY-HEM-GLYD 155
+ Y AR + ++ + ++ F Y E+ LY
Sbjct: 123 IKNY----ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ 178
Query: 156 TPALIDYILAETGHKTLITLGHSLGSTNVLIATSLRPEYQAKRWIFDGNTQ 206
T ++ L + +TL L + + L W+ + +
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL----NILEWLENPSNT 225
Score = 31.9 bits (72), Expect = 0.20
Identities = 45/281 (16%), Positives = 80/281 (28%), Gaps = 115/281 (40%)
Query: 18 QVRKVISGVVGAASS-VTSIQVA----------NLLR----LFKI--------PQTEIIR 54
++R + G G + VT++ +A ++ + LF I P T +
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL-- 319
Query: 55 YWGYPAEEHKVTTKDGYILTNFRIPNP----GGYPLLFLHGLTSSSDCFLGRNPSVDIVF 110
P + + ++ +P+P + + ++ L V+I
Sbjct: 320 ----PPSILEDSLENN-----EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS- 369
Query: 111 LLWKRGYDIWLWNARGN---------LYS------REHVNLTTKQSK--FYQ----FS-- 147
L N N LY + QS+ F + FS
Sbjct: 370 ----------LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR 419
Query: 148 -------YHEMGLYDTPALIDYILAETGHKTLITLGHSLGSTNVLI-ATSLR-PEYQAKR 198
+H L LI+ L NV A ++ P
Sbjct: 420 FLPVASPFHSHLLVPASDLIN---------------KDLVKNNVSFNAKDIQIP------ 458
Query: 199 WIFDGNTQSVLEIGKNQDRSLRKVCGPKSPVVKICMTILAL 239
++D G + LR + G S +I I+ L
Sbjct: 459 -VYDTFD------GSD----LRVLSGSISE--RIVDCIIRL 486
Score = 31.2 bits (70), Expect = 0.40
Identities = 19/94 (20%), Positives = 29/94 (30%), Gaps = 19/94 (20%)
Query: 151 MG--LYDTPALIDYILAETGHKTLITLGHSL------GSTNVLI------ATSLRPEYQA 196
MG LY T + + T G S+ N+ I +R Y A
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA 1690
Query: 197 KRW--IFDGNTQSVLEIGKNQDRSLRKVC--GPK 226
+ I DG ++ +I K + K
Sbjct: 1691 MIFETIVDGKLKT-EKIFKEINEHSTSYTFRSEK 1723
>1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 1.60A {Thermus thermophilus} SCOP:
c.69.1.27
Length = 238
Score = 42.0 bits (98), Expect = 6e-05
Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 13/119 (10%)
Query: 81 PGGYPL-LFLHGLTSSSDCFLGRNPSVDIVFLLWKRGYDIWLWNARGNLYSREHVNLTTK 139
L L LHGL S + L ++ +RG+ + ++A + RE ++K
Sbjct: 21 EAPKALLLALHGLQGSKEHILA------LLPGYAERGFLLLAFDAPRH-GEREGPPPSSK 73
Query: 140 QSKFYQFSYHEMGLYDTPALIDYILAETGHK---TLITLGHSLGSTNVLIATSLRPEYQ 195
++ + Y + E + L G SLG+ + + +
Sbjct: 74 SPRYVEEVYRVA--LGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRPR 130
>2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A*
Length = 251
Score = 41.6 bits (98), Expect = 9e-05
Identities = 29/132 (21%), Positives = 49/132 (37%), Gaps = 18/132 (13%)
Query: 66 TTKDGYILT-NFRIP--NPGGYPL-LFLHGLTSSSDCFLGRNPSVDIVFLLWKRGYDIWL 121
DG L +P NP PL + +HG T S+ V + L + G
Sbjct: 6 IDCDGIKLNAYLDMPKNNPEKCPLCIIIHGFTGHSE----ERHIVAVQETLNEIGVATLR 61
Query: 122 WNARGNLYSREHVNLTTKQSKFYQFSYHEMGLYDTPALIDYILAETGHKTLITLGHSLGS 181
+ G+ S KF + + L + A++DY + GHS G
Sbjct: 62 ADMYGHGKS---------DGKFEDHTLFKW-LTNILAVVDYAKKLDFVTDIYMAGHSQGG 111
Query: 182 TNVLIATSLRPE 193
+V++A ++ +
Sbjct: 112 LSVMLAAAMERD 123
>2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase
fold, structural genomics, structural G of pathogenic
protozoa consortium; 2.20A {Trypanosoma brucei}
Length = 335
Score = 41.2 bits (96), Expect = 1e-04
Identities = 18/123 (14%), Positives = 33/123 (26%), Gaps = 17/123 (13%)
Query: 63 HKVTTKDGYILTNFRIPNPGGYPLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRGYDIWLW 122
+ F + +L++ G T + L S D Y L
Sbjct: 18 FTYYKDPYCKIPVFMMNMDARRCVLWVGGQT---ESLL----SFD---------YFTNLA 61
Query: 123 NARGNLYSREHVNLTTKQSKFYQFSYHEMGLYDTPALIDYILAETGHKTLITLGHSLGST 182
++ V + + + H D LI +L + + S G+
Sbjct: 62 EELQGDWAFVQVEVPSGKIG-SGPQDHAHDAEDVDDLIGILLRDHCMNEVALFATSTGTQ 120
Query: 183 NVL 185
V
Sbjct: 121 LVF 123
>2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR
family, developmental protei differentiation,
neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus
musculus} PDB: 2xmq_A 2xmr_A 2xms_A
Length = 286
Score = 40.5 bits (94), Expect = 3e-04
Identities = 19/132 (14%), Positives = 39/132 (29%), Gaps = 17/132 (12%)
Query: 61 EEHKVTTKDGYILTNFRIPNPGGYP-LLFLHGL-TSSSDCFLGRNPSVDIVFLLWKRGYD 118
H V T G + P + H + + CF D+ ++ + +
Sbjct: 12 HTHSVETPYGSVTFTVYGTPKPKRPAIFTYHDVGLNYKSCFQPLFRFGDMQEII--QNFV 69
Query: 119 IWLWNARGNLYSREHVNLTTKQSKFYQFSYHEMGLYDTPALIDYILAETGHKTLITLGHS 178
+A G + S ++ P ++ Y+ T+I +G
Sbjct: 70 RVHVDAPG-----MEEGAPVFPLGYQYPSLDQLAD-MIPCILQYL----NFSTIIGVGVG 119
Query: 179 LGSTNVLIATSL 190
G+ I +
Sbjct: 120 AGA---YILSRY 128
>3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A
{Escherichia coli} PDB: 3bf8_A
Length = 255
Score = 39.3 bits (92), Expect = 5e-04
Identities = 25/132 (18%), Positives = 42/132 (31%), Gaps = 26/132 (19%)
Query: 75 NFRIPNPG----GYPLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRGYDIWLWNARGNLYS 130
N R P++ +HGL S D ++ ++I + R + S
Sbjct: 4 NIRAQTAQNQHNNSPIVLVHGLFGSLDNL-------GVLARDLVNDHNIIQVDVRNHGLS 56
Query: 131 REHVNLTTKQSKFYQFSYHEMGLYDTPALIDYILAETGHKTLITLGHSLGSTNVLIATSL 190
+Y M D +D + +GHS+G V+ T+L
Sbjct: 57 -PREP---------VMNYPAMA-QDLVDTLDAL----QIDKATFIGHSMGGKAVMALTAL 101
Query: 191 RPEYQAKRWIFD 202
P+ K D
Sbjct: 102 APDRIDKLVAID 113
>3ksr_A Putative serine hydrolase; catalytic triad, structural genomics,
JOIN for structural genomics, JCSG; 2.69A {Xanthomonas
campestris PV}
Length = 290
Score = 38.7 bits (90), Expect = 0.001
Identities = 29/141 (20%), Positives = 48/141 (34%), Gaps = 23/141 (16%)
Query: 57 GYPAEEHKVTTK-DGYILTNFRIPNPGGYP-LLFLHGLTSSSDCFLGRNPSVDIVFLLWK 114
G A+ + L+ + P G P +LF+HG S L R
Sbjct: 1 GMEAKLSSIEIPVGQDELSGTLLT-PTGMPGVLFVHGWGGSQHHSLVRAR------EAVG 53
Query: 115 RGYDIWLWNARGN-LYSREHVNLTTKQSKFYQFSYHEMGLYDTPALIDYILAETG--HKT 171
G ++ RG+ Y+ ++T Q+ L D A D + + +
Sbjct: 54 LGCICMTFDLRGHEGYASMRQSVTRAQN-----------LDDIKAAYDQLASLPYVDAHS 102
Query: 172 LITLGHSLGSTNVLIATSLRP 192
+ +G S G + T RP
Sbjct: 103 IAVVGLSYGGYLSALLTRERP 123
>3nwo_A PIP, proline iminopeptidase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, mycobac smegmatis; 1.90A {Mycobacterium
smegmatis}
Length = 330
Score = 38.5 bits (90), Expect = 0.001
Identities = 23/141 (16%), Positives = 36/141 (25%), Gaps = 24/141 (17%)
Query: 59 PAEEHKVTTKDG---YILTNFRIPNPGGYPLLFLHGLTSSSDCFLGRNPSVDIVFLLWKR 115
P V D +T P PL+ LHG N +I L +
Sbjct: 27 PVSSRTVPFGDHETWVQVTTPENAQPHALPLIVLHGGPGM-----AHNYVANIAALADET 81
Query: 116 GYDIWLWNARGNLYSREHVNLTTKQSKFYQFSYHEMGLYDTPALID---YILAETGHKTL 172
G + ++ G S + + +D + G +
Sbjct: 82 GRTVIHYDQVGCGNSTHLPD-------------APADFWTPQLFVDEFHAVCTALGIERY 128
Query: 173 ITLGHSLGSTNVLIATSLRPE 193
LG S G +P
Sbjct: 129 HVLGQSWGGMLGAEIAVRQPS 149
>1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta
hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP:
c.69.1.29 PDB: 1r1d_A* 4diu_A
Length = 247
Score = 37.4 bits (87), Expect = 0.002
Identities = 25/119 (21%), Positives = 36/119 (30%), Gaps = 22/119 (18%)
Query: 76 FRIPNPGGYPLLFLHGLTSSSDCF--LGRNPSVDIVFLLWKRGYDIWLWNARGNLYSREH 133
F G +L LHG T +S LGR L +GY +G H
Sbjct: 10 FFFEA-GERAVLLLHGFTGNSADVRMLGRF--------LESKGYTCHAPIYKG------H 54
Query: 134 VNLTTKQSKFYQFSYHEMGLYDTPALIDYILAETGHKTLITLGHSLGSTNVLIATSLRP 192
+ + D ++ L G++ + G SLG L P
Sbjct: 55 ---GVPPEELVHTGPDDW-WQDVMNGYEF-LKNKGYEKIAVAGLSLGGVFSLKLGYTVP 108
>2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE PGE; 1.96A {Bacillus subtilis}
Length = 306
Score = 37.3 bits (87), Expect = 0.003
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 51 EIIRYWGYPAEEHKVTTKDGYILTNFRIPNPG-GYPLLFLHGLTSSSD 97
E + W + ++T+ G T+ P PL+ LHG SS
Sbjct: 36 ESLSLWPVRCKSFYISTRFG--QTHVIASGPEDAPPLVLLHGALFSST 81
>2yys_A Proline iminopeptidase-related protein; TTHA1809, structural
genomics, unknown function; 2.20A {Thermus thermophilus}
Length = 286
Score = 36.6 bits (85), Expect = 0.004
Identities = 19/118 (16%), Positives = 35/118 (29%), Gaps = 25/118 (21%)
Query: 80 NPGGYPLLFLHG-LTSSSDCFLGRNPSVDIVFLLWKRGYDIWLWNARGNLYSREHVNLTT 138
G L LHG ++ + G+ + ++ RG+ S E
Sbjct: 22 PVEGPALFVLHGGPGGNAYVLREG-------LQDYLEGFRVVYFDQRGSGRSLELP---- 70
Query: 139 KQSKFYQFSYHEMGLYDTPALID---YILAETGHKTLITLGHSLGSTNVLIATSLRPE 193
+ L+ AL++ + G + L H G+ L P+
Sbjct: 71 ----------QDPRLFTVDALVEDTLLLAEALGVERFGLLAHGFGAVVALEVLRRFPQ 118
>3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase,
decarboxylase, sulfate elimination, terminal alkene
production; 1.68A {Lyngbya majuscula 19L}
Length = 286
Score = 36.6 bits (85), Expect = 0.005
Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 22/116 (18%)
Query: 80 NPGGYPLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRGYDIWLWNARGNLYSREHVNLTTK 139
+P +L +HG+ + ++ L +GY + + G H ++
Sbjct: 23 SPEHPVVLCIHGILEQGLAW------QEVALPLAAQGYRVVAPDLFG------H-GRSSH 69
Query: 140 QSK--FYQFSYHEMGLYDTPALIDYILAETGHKTLITLGHSLGSTNVLIATSLRPE 193
Y L +I + + L+ +GHS+G+ S+RP+
Sbjct: 70 LEMVTSYSSLTF---LAQIDRVIQEL----PDQPLLLVGHSMGAMLATAIASVRPK 118
>1r3d_A Conserved hypothetical protein VC1974; structural genomics,
hydrolase, NYSGXRC, NEW YORK SGX research center for
structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP:
c.69.1.35
Length = 264
Score = 36.1 bits (84), Expect = 0.006
Identities = 15/123 (12%), Positives = 37/123 (30%), Gaps = 19/123 (15%)
Query: 75 NFRIPNPGGYPLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRGYDIWLWNARGNLYSREHV 134
+F P ++ +HGL S + ++ L + + G H
Sbjct: 8 HFAKPTARTPLVVLVHGLLGSGADWQP------VLSHLARTQCAALTLDLPG------H- 54
Query: 135 NLTTKQSKFYQFSYHEMGLYDTPALIDYILAETGHKTLITLGHSLGSTNVLIATSLRPEY 194
+ + ++ E + + + L+ G+SLG ++ +
Sbjct: 55 ---GTNPERHCDNFAEA-VEMIEQTVQAHVTSEVPVILV--GYSLGGRLIMHGLAQGAFS 108
Query: 195 QAK 197
+
Sbjct: 109 RLN 111
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap
module, G-protein coupled receptor, signaling; 2.38A
{Homo sapiens} PDB: 4f12_A*
Length = 433
Score = 36.4 bits (84), Expect = 0.006
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 24 SGVVGAASSVTSIQVANLLRLFKIPQ 49
V G + +A L+ + + Q
Sbjct: 87 LMVFGGVCPSVTSIIAESLQGWNLVQ 112
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.008
Identities = 38/272 (13%), Positives = 74/272 (27%), Gaps = 101/272 (37%)
Query: 6 NIDDTDY--HCNKTQVRKVISGVVGAASSVTSIQVANLLRLF----------KIPQTEII 53
+ D H N ++ +I SS+ ++ A ++F IP +
Sbjct: 340 GLATWDNWKHVNCDKLTTIIE------SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 54 RYWGYPAEE-------------------------------------------HK-----V 65
W + H+
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 66 TTKDGYILTNFRIPNPGGYPLLFL--H----GLTSSSDCFLGRNPSVDIVFLLWKRGYDI 119
+ + P Y + H F R +D FL K +D
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF--RMVFLDFRFLEQKIRHDS 511
Query: 120 WLWNARGNLYSREHVNLTTKQSKFYQFSY-------HEMGLYDTPALIDYI------LAE 166
WNA G++ + T +Q KFY+ Y +E + ++D++ L
Sbjct: 512 TAWNASGSILN------TLQQLKFYK-PYICDNDPKYERLVNA---ILDFLPKIEENLIC 561
Query: 167 TGHKTLITLGHSLGSTNVLIATSLRPEYQAKR 198
+ + L+ + + + + Q +R
Sbjct: 562 SKYTDLLRIALM-AEDEAIFEEAHK---QVQR 589
Score = 31.0 bits (69), Expect = 0.46
Identities = 43/287 (14%), Positives = 78/287 (27%), Gaps = 93/287 (32%)
Query: 22 VISGVVGAASSVTSIQVANLLRLFKIPQTEIIRYW---GYPAEEHKVTTKDGYILTNFRI 78
+I GV+G+ + ++ V ++ +I +W V +L
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKI--FWLNLKNCNSPETVLE----MLQK--- 204
Query: 79 PNPGGYPLLFLHGLTSSSDCFLGRNPSVDIVF-------LLWKRGY--------DIW--- 120
LL+ +S N + I LL + Y ++
Sbjct: 205 -------LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257
Query: 121 LWNA-----------R---------GNLYSR---EHVN--LTTKQSKFYQFSYHEMGLYD 155
WNA R + +H + LT + K Y + D
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 156 TPALIDYILAETGHKTLITLGHSLGSTNVLIATSLRPEYQAKRW-----IFDGNTQSVLE 210
P T + ++ +IA S+R W + +++E
Sbjct: 318 LPR-----EVLTTNPRRLS----------IIAESIRDG--LATWDNWKHVNCDKLTTIIE 360
Query: 211 IGKNQ-----DRSLRKVCG--PKSPVVKICMTILALVSGFQSNQTVE 250
N R + P S I +L+L+ V
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPS--AHIPTILLSLIWFDVIKSDVM 405
>4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A
4ao8_A
Length = 259
Score = 35.6 bits (81), Expect = 0.010
Identities = 25/128 (19%), Positives = 42/128 (32%), Gaps = 14/128 (10%)
Query: 79 PNPGGYPL-LFLHGLTSSSDCFLGRNPSVDIVFLLWKRGY-----DIWLWNARGNLYS-- 130
L L HG T+ + LL RG D R ++ +
Sbjct: 51 AEGSSDRLVLLGHGGTTHKK----VEYIEQVAKLLVGRGISAMAIDGPGHGERASVQAGR 106
Query: 131 --REHVNLTTKQSKFYQFSYHEMGLYDTPALIDYILAETGHKTLITLGHSLGSTNVLIAT 188
+ V L +++ + D A +D+I AE G + G S+G+ L T
Sbjct: 107 EPTDVVGLDAFPRMWHEGGGTAAVIADWAAALDFIEAEEGPRPTGWWGLSMGTMMGLPVT 166
Query: 189 SLRPEYQA 196
+ +
Sbjct: 167 ASDKRIKV 174
>3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure
initiative, PSI-2, structural midwest center for
structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus
anthracis}
Length = 278
Score = 35.0 bits (81), Expect = 0.015
Identities = 18/115 (15%), Positives = 28/115 (24%), Gaps = 25/115 (21%)
Query: 83 GYPLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRGYDIWLWNARGNLYSREHVNLTTKQSK 142
G PL H + +D + Y ++L N +G +
Sbjct: 23 GPPLCVTHLYSEYNDNGNT-------FANPFTDHYSVYLVNLKG-------CGNSDS--- 65
Query: 143 FYQFSYHEMGLYDTPALIDYILA---ETGHKTLITLGHSLGSTNVLIATSLRPEY 194
Y I + A GHS G L+ + E
Sbjct: 66 -----AKNDSEYSMTETIKDLEAIREALYINKWGFAGHSAGGMLALVYATEAQES 115
>1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus
subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A*
2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A
3qmm_A
Length = 181
Score = 34.3 bits (79), Expect = 0.018
Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 27/102 (26%)
Query: 83 GYPLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRGY---DIWLWNARGNLYSREHVNLTTK 139
P++ +HG+ +S F G I L +G+ ++ + + +
Sbjct: 3 HNPVVMVHGIGGASFNFAG------IKSYLVSQGWSRDKLYAVDFWDKTGTNYN------ 50
Query: 140 QSKFYQFSYHEMGLYDTPALIDYILAETGHKTLITLGHSLGS 181
+ + + +L ETG K + + HS+G
Sbjct: 51 -------NGPVLS-----RFVQKVLDETGAKKVDIVAHSMGG 80
>3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural
genomics, protein structure initiative, PSI-2; HET: MSE;
1.50A {Novosphingobium aromaticivorans}
Length = 285
Score = 34.7 bits (80), Expect = 0.019
Identities = 31/149 (20%), Positives = 49/149 (32%), Gaps = 46/149 (30%)
Query: 59 PAEEHKVTTKDGYILTNFRI--PNPGGYPLLFLHGLTSSSDCF------LGRNPSV---D 107
E+ T+ DG L +FR + P+L L GLT ++ F L + V +
Sbjct: 4 EYEDRYWTSSDGLRL-HFRAYEGDISRPPVLCLPGLTRNARDFEDLATRLAGDWRVLCPE 62
Query: 108 IVFLLWKRGY---DIWLWNARGNLYSREHVNLTTKQSKFYQFSYHEMGLYDTPALIDYIL 164
+ RG D + Y Y L D AL+
Sbjct: 63 M------RGRGDSD---YAKDPMTYQPMQ----------Y--------LQDLEALLAQE- 94
Query: 165 AETGHKTLITLGHSLGSTNVLIATSLRPE 193
G + + +G SLG ++ + P
Sbjct: 95 ---GIERFVAIGTSLGGLLTMLLAAANPA 120
>3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad,
rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A
3dyi_A 3dyv_A 3e1g_A
Length = 251
Score = 34.5 bits (79), Expect = 0.022
Identities = 21/123 (17%), Positives = 41/123 (33%), Gaps = 21/123 (17%)
Query: 76 FRIPNPGGYPLLFLHGLTSSSDCF--LGRNPSVDIVFLLWKRGYDIWLWNARGNLYSREH 133
F ++ LH T S + + R L + GY +++ G+
Sbjct: 16 FEYEG-TDTGVVLLHAYTGSPNDMNFMARA--------LQRSGYGVYVPLFSGHGTVEPL 66
Query: 134 VNLTTKQSKFYQFSYHEMGLYDTPALIDYILAETGHKTLITLGHSLGSTNVLIATSLRPE 193
LT ++ ++ A + ++ A+ + + G SLG + A P
Sbjct: 67 DILTK--------GNPDIWWAESSAAVAHMTAK--YAKVFVFGLSLGGIFAMKALETLPG 116
Query: 194 YQA 196
A
Sbjct: 117 ITA 119
>1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase,
polyketide, tailoring enzyme, structural proteomics in
europe, spine; HET: AKT 1PE; 1.45A {Streptomyces
purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A*
Length = 298
Score = 34.4 bits (79), Expect = 0.023
Identities = 18/115 (15%), Positives = 39/115 (33%), Gaps = 18/115 (15%)
Query: 80 NPGGYPLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRGYDIWLWNARGNLYSREHVNLTTK 139
+P LL + G S+ + + L G + ++ R +T
Sbjct: 20 DPADPALLLVMGGNLSALGW-----PDEFARRLADGGLHVIRYDHRD-------TGRSTT 67
Query: 140 QSKFYQ-FSYHEMGLYDTPALIDYILAETGHKTLITLGHSLGSTNVLIATSLRPE 193
+ + + E+ D A++D + H +G S+G+T + +
Sbjct: 68 RDFAAHPYGFGELAA-DAVAVLDGWGVDRAH----VVGLSMGATITQVIALDHHD 117
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION
channel, NMDA receptor, allosteri modulation,
phenylethanolamine, polyamine; HET: NAG BMA; 2.00A
{Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Length = 384
Score = 34.3 bits (78), Expect = 0.033
Identities = 4/28 (14%), Positives = 11/28 (39%)
Query: 22 VISGVVGAASSVTSIQVANLLRLFKIPQ 49
++S +T ++ ++IP
Sbjct: 70 LVSHPPAPTDHLTPTPISYTAGFYRIPV 97
>3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like
hydrolase, structural genomi center for structural
genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm
1728}
Length = 207
Score = 33.3 bits (76), Expect = 0.044
Identities = 20/139 (14%), Positives = 46/139 (33%), Gaps = 18/139 (12%)
Query: 57 GYPAEEHKVTTKDGYILTNFRIPNPGGYPLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRG 116
G +E + + + + + HG + +S + D+ K G
Sbjct: 1 GMALQEEFIDVNGTRVFQRKMVTDSNRRSIALFHGYSFTSMDWD----KADLFNNYSKIG 56
Query: 117 YDIWLWNARGNLYSREHVNLTTKQSKFYQFSYHEMGLY--DTPALIDYILAETGHKTLIT 174
Y+++ + G + R + S+ Y ++ + G +
Sbjct: 57 YNVYAPDYPG--FGR------SASSEKYGIDRGDLKHAAEFIRDYLKAN----GVARSVI 104
Query: 175 LGHSLGSTNVLIATSLRPE 193
+G S+G V++ T P+
Sbjct: 105 MGASMGGGMVIMTTLQYPD 123
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.050
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 19/46 (41%)
Query: 206 QSVLEIGKNQDRSLRKVCGPKS-PVVKICMTILALVSGFQSNQTVE 250
Q++ K SL K+ S P + I T+E
Sbjct: 20 QAL----KKLQASL-KLYADDSAPALAI-------------KATME 47
>1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A
{Streptomyces lividans} SCOP: c.69.1.12
Length = 275
Score = 33.0 bits (76), Expect = 0.071
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 8/39 (20%)
Query: 65 VTTKDG----YILTNFRIPNPGGYPLLFLHGLTSSSDCF 99
VTT DG Y G P++F HG S+D +
Sbjct: 3 VTTSDGTNIFYKDWG----PRDGLPVVFHHGWPLSADDW 37
>1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate
inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa}
SCOP: c.69.1.18
Length = 285
Score = 33.1 bits (75), Expect = 0.073
Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 20/111 (18%)
Query: 84 YPLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRGYDIWLWNARGNLYSREHVNLTTKQSKF 143
YP++ HG+ + LG + I L + G +++ S +Q
Sbjct: 8 YPIVLAHGMLGFDN-ILGVDYWFGIPSALRRDGAQVYVTEVSQLDTSEVRGEQLLQQ--- 63
Query: 144 YQFSYHEMGLYDTPALIDYILAETGHKTLITLGHSLGSTNVLIATSLRPEY 194
++ I+A +G + +GHS G + ++RP+
Sbjct: 64 ----------------VEEIVALSGQPKVNLIGHSHGGPTIRYVAAVRPDL 98
>3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase
fold, hydrolase; 1.20A {Bacillus SP}
Length = 270
Score = 32.5 bits (74), Expect = 0.089
Identities = 20/112 (17%), Positives = 35/112 (31%), Gaps = 22/112 (19%)
Query: 87 LFLHGLTSSSDCF--LGRNPSVDIVFLLWKRGYDIWLWNARGNLYSREHVNLTTKQSKFY 144
L +HG T + L K GY + L +G H T
Sbjct: 44 LLVHGFTGTPHSMRPLAEA--------YAKAGYTVCLPRLKG------H---GTHYEDME 86
Query: 145 QFSYHEMGLYDTPALIDYILAETGHKTLITLGHSLGSTNVLIATSLRPEYQA 196
+ ++H+ + ++ +T+ G S+G T L P+
Sbjct: 87 RTTFHDW-VASVEEGYGWLKQR--CQTIFVTGLSMGGTLTLYLAEHHPDICG 135
>1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida}
PDB: 4dgq_A
Length = 276
Score = 32.2 bits (74), Expect = 0.10
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 8/39 (20%)
Query: 65 VTTKDG----YILTNFRIPNPGGYPLLFLHGLTSSSDCF 99
VTTKDG Y + F HG S+D +
Sbjct: 4 VTTKDGVQIFYKDWG----PRDAPVIHFHHGWPLSADDW 38
>3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase
fold, carboxylesterase, Ser- hydrolase; 2.00A
{Streptococcus mutans}
Length = 292
Score = 31.9 bits (72), Expect = 0.17
Identities = 22/138 (15%), Positives = 37/138 (26%), Gaps = 31/138 (22%)
Query: 61 EEHKVTTKDGYILTNFRIPNPGGYPLLFLH--GLTSSSDCFLGRNPSVDIVFLLWKRGYD 118
+ V T G I T R G +FL G S++D F +
Sbjct: 22 NKEMVNTLLGPIYTCHR---EGNPCFVFLSGAGFFSTADNF-------ANIIDKLPDSIG 71
Query: 119 IWLWNARGNLYSREHVNLTTKQSKFYQFSYHEMGLYDTPALIDYI---LAETGHKTLITL 175
I +A + YS ++ I ++ +
Sbjct: 72 ILTIDAPNSGYS----------------PVSNQANVGLRDWVNAILMIFEHFKFQSYLLC 115
Query: 176 GHSLGSTNVLIATSLRPE 193
HS+G L + +
Sbjct: 116 VHSIGGFAALQIMNQSSK 133
>3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A,
alternative splicing, hydrolase, phosphoprotein, serine
esterase; 2.00A {Homo sapiens} PDB: 3c5w_P
Length = 316
Score = 31.7 bits (72), Expect = 0.17
Identities = 21/123 (17%), Positives = 41/123 (33%), Gaps = 19/123 (15%)
Query: 60 AEEHKVTTKDGYILTNFRIPNPGGYPLLFLHGLTSSSDCF--LGRNPSVDIVFLLWKRGY 117
E+ +V + G G LL LHG S+ + ++ +
Sbjct: 15 MEDVEVENETGKDTFRVYKSGSEGPVLLLLHGGGHSALSWAVFTAA-------IISRVQC 67
Query: 118 DIWLWNARGNLYSREHVNLTTKQSKFYQFSYHEMGLYDTPALIDYILAETGHKTLITLGH 177
I + R H T ++ S M D +++ + + ++ +GH
Sbjct: 68 RIVALDLRS------H-GETKVKNPE-DLSAETM-AKDVGNVVEAMYGDLPPPIML-IGH 117
Query: 178 SLG 180
S+G
Sbjct: 118 SMG 120
>1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1
interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23
Length = 210
Score = 31.4 bits (71), Expect = 0.18
Identities = 16/115 (13%), Positives = 35/115 (30%), Gaps = 16/115 (13%)
Query: 79 PNPGGYPLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRGYDIWLWNARGNLYSREHVNLTT 138
+ +L LHG+ SS+ + ++ + L + GY + G +S+E
Sbjct: 28 SGQARFSVLLLHGIRFSSETWQ----NLGTLHRLAQAGYRAVAIDLPGLGHSKEAA---- 79
Query: 139 KQSKFYQFSYHEMGLYDTPALIDYILAETGHKTLITLGHSLGSTNVLIATSLRPE 193
G + + ++ + + SL L +
Sbjct: 80 -----APAPI---GELAPGSFLAAVVDALELGPPVVISPSLSGMYSLPFLTAPGS 126
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein
fold, dimer, hormone/growth FACT receptor, lyase
complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP:
c.93.1.1 PDB: 1t34_A* 3a3k_A*
Length = 435
Score = 32.1 bits (72), Expect = 0.19
Identities = 3/27 (11%), Positives = 10/27 (37%)
Query: 23 ISGVVGAASSVTSIQVANLLRLFKIPQ 49
+ +G ++ V +++P
Sbjct: 78 PAVFLGPGCVYSAAPVGRFTAHWRVPL 104
>3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine
esterase; 2.20A {Homo sapiens}
Length = 342
Score = 31.6 bits (72), Expect = 0.23
Identities = 30/149 (20%), Positives = 48/149 (32%), Gaps = 31/149 (20%)
Query: 61 EEHKVTTKDGYILTNFRIPNPGGYP---LLFLHGLTSSSDCFLGRNPSVDIVFLLWKRGY 117
+ + DG L R P G P + HG S GR ++ +L
Sbjct: 36 DLPHLVNADGQYLF-CRYWKPTGTPKALIFVSHGAGEHS----GRY--EELARMLMGLDL 88
Query: 118 DIWLWNARGNLYS---REHVNLTTKQSKFYQFSYHEMGLYDTPALIDYILAETGHKTLIT 174
++ + G+ S R V+ +H + D +D + + +
Sbjct: 89 LVFAHDHVGHGQSEGERMVVS-----------DFHVF-VRDVLQHVDSMQKDYPGLPVFL 136
Query: 175 LGHSLGSTNVLIATSLRPEYQAKRWIFDG 203
LGHS+G IA E F G
Sbjct: 137 LGHSMGG---AIAILTAAERPGH---FAG 159
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein
glycoprotein, cell junction, cell membrane,
glycoprotein, ION transport; HET: NAG TLA; 2.70A
{Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A*
3olz_A*
Length = 395
Score = 31.2 bits (70), Expect = 0.27
Identities = 4/27 (14%), Positives = 13/27 (48%)
Query: 23 ISGVVGAASSVTSIQVANLLRLFKIPQ 49
++ + G + S ++ V ++ +P
Sbjct: 72 VAAIFGPSHSSSANAVQSICNALGVPH 98
>3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold,
2-arachidonyl-glycerol, M associated, hydrolase,
hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A
{Homo sapiens} PDB: 3jw8_A 3jwe_A*
Length = 303
Score = 31.1 bits (71), Expect = 0.31
Identities = 30/149 (20%), Positives = 48/149 (32%), Gaps = 31/149 (20%)
Query: 61 EEHKVTTKDGYILTNFRIPNPGGYP---LLFLHGLTSSSDCFLGRNPSVDIVFLLWKRGY 117
+ + DG L R P G P + HG S GR ++ +L
Sbjct: 18 DLPHLVNADGQYLF-CRYWAPTGTPKALIFVSHGAGEHS----GRY--EELARMLMGLDL 70
Query: 118 DIWLWNARGNLYS---REHVNLTTKQSKFYQFSYHEMGLYDTPALIDYILAETGHKTLIT 174
++ + G+ S R V+ +H + D +D + + +
Sbjct: 71 LVFAHDHVGHGQSEGERMVVS-----------DFHVF-VRDVLQHVDSMQKDYPGLPVFL 118
Query: 175 LGHSLGSTNVLIATSLRPEYQAKRWIFDG 203
LGHS+G IA E F G
Sbjct: 119 LGHSMGG---AIAILTAAERPGH---FAG 141
>1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic
acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET:
2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D
1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A
2es4_A 1tah_B 1qge_D 1qge_E
Length = 320
Score = 30.8 bits (69), Expect = 0.43
Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 16/111 (14%)
Query: 84 YPLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRGYDIWLWNARGNLYSREHVNLTTKQSKF 143
YP++ +HGLT + I L +RG +++ N G S + N +Q
Sbjct: 9 YPIILVHGLTGTDKYAGVLEYWYGIQEDLQQRGATVYVANLSG-FQSDDGPNGRGEQ--- 64
Query: 144 YQFSYHEMGLYDTPALIDYILAETGHKTLITLGHSLGSTNVLIATSLRPEY 194
L A + +LA TG + +GHS G ++ P+
Sbjct: 65 ---------LL---AYVKTVLAATGATKVNLVGHSQGGLTSRYVAAVAPDL 103
>3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG;
HET: MES; 2.25A {Pseudomonas aeruginosa}
Length = 266
Score = 30.3 bits (69), Expect = 0.43
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 9/69 (13%)
Query: 59 PAEEHKVTTKDGYILTNFRIPNPGGYP-LLFLHGLTSSSDCFLGRNPSVDIVFLLWKRGY 117
+ T DG L +R+ P L + + ++ + D R +
Sbjct: 3 AGNLSFLATSDGASL-AYRLDGAAEKPLLALSNSIGTTLHMW-------DAQLPALTRHF 54
Query: 118 DIWLWNARG 126
+ ++ARG
Sbjct: 55 RVLRYDARG 63
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor;
hormone-receptor complex, natriuretic peptide receptor,
ALLO activation, signaling protein; HET: NDG NAG; 2.00A
{Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A*
1yk1_A*
Length = 441
Score = 30.9 bits (69), Expect = 0.45
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 20 RKVISGVVGAASSVTSIQVANLLRLFKIPQ 49
++G + VA L + +P
Sbjct: 82 GAKPDLILGPVCEYAAAPVARLASHWDLPM 111
>2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone
biosynthesis, lyase; 1.94A {Staphylococcus aureus}
Length = 269
Score = 30.4 bits (69), Expect = 0.46
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 80 NPGGYPLLFLHGLTSSSD 97
L+FLHG S S
Sbjct: 13 VETNQVLVFLHGFLSDSR 30
>3e0x_A Lipase-esterase related protein; APC60309, clostridium
acetobutylicum ATCC 824, structural genomics, PSI-2;
HET: MSE; 1.45A {Clostridium acetobutylicum}
Length = 245
Score = 30.4 bits (69), Expect = 0.52
Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 19/113 (16%)
Query: 82 GGYPLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRGYDIWLWNARGNLYSREHVNLTTKQS 141
LLF+HG + F ++ L Y+ L + +G H + Q
Sbjct: 15 SPNTLLFVHGSGCNLKIF------GELEKYL--EDYNCILLDLKG------H-GESKGQC 59
Query: 142 KFYQFSYHEMGLYDTPALIDYILAETGHKTLITLGHSLGSTNVLIATSLRPEY 194
+ Y + + I K + +G+S+G VL +
Sbjct: 60 PSTVYGYID----NVANFITNSEVTKHQKNITLIGYSMGGAIVLGVALKKLPN 108
>1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A
{Streptomyces aureofaciens} SCOP: c.69.1.12
Length = 274
Score = 30.0 bits (68), Expect = 0.56
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 65 VTTKDGYILTNFRIPNPGGYPLLFLHGLTSSSDCF 99
TT+DG + ++ G P++F+HG + D +
Sbjct: 3 CTTRDG-VEIFYKDWGQG-RPVVFIHGWPLNGDAW 35
>1azw_A Proline iminopeptidase; aminopeptidase, serine protease,
xanthomonas campestris; 2.70A {Xanthomonas citri} SCOP:
c.69.1.7
Length = 313
Score = 30.2 bits (67), Expect = 0.60
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 13/62 (20%)
Query: 80 NPGGYPLLFLHG---LTSSSDCFLGRNPSVDIVFLLWKRGYDIWLWNARGNLYSREHVNL 136
NP G P++ LHG + +P+ Y I L++ RG+ S H +L
Sbjct: 31 NPHGKPVVMLHGGPGGGCNDKMRRFHDPAK----------YRIVLFDQRGSGRSTPHADL 80
Query: 137 TT 138
Sbjct: 81 VD 82
>1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI,
protei structure initiative; HET: MSE 3OH; 1.70A
{Escherichia coli} SCOP: c.69.1.26
Length = 258
Score = 29.9 bits (68), Expect = 0.61
Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 26/100 (26%)
Query: 81 PGGYPLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRGYDIWLWNARGNLYSREHVNLTTKQ 140
G L+ LHG +++ + + + + L + G + R
Sbjct: 11 QGNVHLVLLHGWGLNAEVW-------RCIDEELSSHFTLHLVDLPG--FGR--------- 52
Query: 141 SKFYQFSYHEMGLYDTPALIDYILAETGHKTLITLGHSLG 180
S+ + G + + + + I LG SLG
Sbjct: 53 SRGF-------GALSLADMAE-AVLQQAPDKAIWLGWSLG 84
>3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta
hydrolase, PLP degradation, E-2-
(acetamidomethylene)succinate; 2.26A {Mesorhizobium
loti}
Length = 314
Score = 30.1 bits (68), Expect = 0.72
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 83 GYPLLFLHGLTSSSDCF 99
G +LF HG+TS+S F
Sbjct: 68 GPLMLFFHGITSNSAVF 84
>2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase,
alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter
nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A*
Length = 276
Score = 29.7 bits (67), Expect = 0.78
Identities = 20/122 (16%), Positives = 38/122 (31%), Gaps = 21/122 (17%)
Query: 59 PAEEHKVTTKDGYILTNFRIPNPGGYPLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRGYD 118
H+ D + + G +L L G + + +
Sbjct: 3 DTYLHETLVFDNKLSYIDNQRDTDGPAILLLPGWCHDHRVY-------KYLIQELDADFR 55
Query: 119 IWLWNARGNLYSREHVNLTTKQSKFYQFSYHEMGLYDTPALIDYILAETGHKTLITLGHS 178
+ + N RG H L+ + + Y E D ++D + G +T + + HS
Sbjct: 56 VIVPNWRG------H-GLSPSEVPDF--GYQEQV-KDALEILDQL----GVETFLPVSHS 101
Query: 179 LG 180
G
Sbjct: 102 HG 103
>1lgy_A Lipase, triacylglycerol lipase; hydrolase (carboxylic ester); 2.20A
{Rhizopus niveus} SCOP: c.69.1.17 PDB: 1tic_A
Length = 269
Score = 29.5 bits (66), Expect = 0.81
Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 6/105 (5%)
Query: 79 PNPGGYPLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRGYDI---WLWNARGNLYSREHVN 135
P G + L S ++ ++ R+ ++L++ RG + + + N + V
Sbjct: 46 WVPDGKIITTFTSLLSDTNGYVLRSDKQKTIYLVF-RGTNSFRSAITDIVFNFSDYKPVK 104
Query: 136 LTTKQSKFYQFSYHEMGLYDTPALIDYILAETGHKTLITLGHSLG 180
+ F SY ++ + D ++ L +I GHSLG
Sbjct: 105 GAKVHAGFLS-SYEQV-VNDYFPVVQEQLTAHPTYKVIVTGHSLG 147
>1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged
active site, prolyl peptidase; 1.80A {Thermoplasma
acidophilum} SCOP: c.69.1.7 PDB: 1mt3_A 1mu0_A* 1xrr_A
1xrq_A 1xro_A 1xrn_A 1xrm_A 1xrp_A 1xrl_A* 1xqw_A*
1xqx_A* 1xqy_A 1xqv_A
Length = 293
Score = 29.5 bits (67), Expect = 0.88
Identities = 15/108 (13%), Positives = 34/108 (31%), Gaps = 27/108 (25%)
Query: 80 NP-GGYPLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRGYDIWLWNARGNLYSREHVNLTT 138
P L+ +HG S +L + + K G + ++ G S E
Sbjct: 24 APEEKAKLMTMHGGPGMSHDYLLS------LRDMTKEGITVLFYDQFGCGRSEEP----- 72
Query: 139 KQSKFYQFSYHEMGLYDTPALID---YILAE-TGHKTLITLGHSLGST 182
+ + ++ + ++ G++ + +G S G
Sbjct: 73 -----------DQSKFTIDYGVEEAEALRSKLFGNEKVFLMGSSYGGA 109
>1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate
complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12
Length = 273
Score = 29.6 bits (67), Expect = 0.92
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 65 VTTKDGYILTNFRIPNPGGYPLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRGYDIWLWNA 124
TT+DG + ++ G P++F HG ++D + + ++FL +GY + +
Sbjct: 3 FTTRDGTQI-YYKDWGSG-QPIVFSHGWPLNADSWESQ-----MIFLA-AQGYRVIAHDR 54
Query: 125 RG 126
RG
Sbjct: 55 RG 56
>2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the
alpha/beta superfamily, structural genomics; HET: MSE
TLA P6G; 1.35A {Xanthomonas campestris PV}
Length = 176
Score = 28.7 bits (64), Expect = 1.1
Identities = 17/118 (14%), Positives = 33/118 (27%), Gaps = 26/118 (22%)
Query: 86 LLFLHGLTSSSDCFLGRNPSVDIVFL---LWKRGYDIWLWNARGNLYSREHVNLTTKQSK 142
+ HG S D ++ + L + G+ + R+
Sbjct: 7 CILAHGFESGPD-------ALKVTALAEVAERLGWTHERPDFTDLDARRD---------- 49
Query: 143 FYQFSYHEMGLYDTPALIDYILAETGHKTLITLGHSLGSTNVLIATSLRPEYQAKRWI 200
+ L++ A T ++ G SLGS IA + + +
Sbjct: 50 --LGQLGD-VRGRLQRLLEIARAATEKGPVVLAGSSLGS---YIAAQVSLQVPTRALF 101
>3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog,
hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas
fluorescens} PDB: 1va4_A 3hi4_A 3hea_A
Length = 271
Score = 29.2 bits (66), Expect = 1.2
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 83 GYPLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRGYDIWLWNARG 126
G P+LF HG +D + ++ +L RGY ++ RG
Sbjct: 19 GKPVLFSHGWLLDADMW---EYQME--YLS-SRGYRTIAFDRRG 56
>3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A
{Mycobacterium tuberculosis}
Length = 330
Score = 29.3 bits (66), Expect = 1.3
Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 50 TEIIRYWGYPAEEHKVTTKDGYILTNFRIPNPGGYPLLFLHGLTSSSDCF 99
E G +V ++ R ++FLHG ++ +
Sbjct: 49 AENAEQAGVNGPLPEVERVQAGAISALRWGGSAP-RVIFLHGGGQNAHTW 97
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.5 bits (66), Expect = 1.3
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 20/60 (33%)
Query: 133 HVNLTT-----KQSKFYQFSYHEMGLY---------------DTPALIDYILAETGHKTL 172
V +TT + + +YQ Y + G D ALI++I + L
Sbjct: 503 KVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEFIYDTEKNGGL 562
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell
CELL membrane, endoplasmic reticulum, glycoprotein, ION
TRA ionic channel; HET: NAG BMA; 1.75A {Rattus
norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A
3n6v_A
Length = 376
Score = 29.0 bits (64), Expect = 1.4
Identities = 2/32 (6%), Positives = 9/32 (28%)
Query: 18 QVRKVISGVVGAASSVTSIQVANLLRLFKIPQ 49
Q + + + G + + + +
Sbjct: 56 QFSRGVYAIFGFYDKKSVNTITSFCGTLHVSF 87
>3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT
peroxidase, oxidoreductase; 1.74A {Bacillus anthracis
str}
Length = 281
Score = 28.9 bits (65), Expect = 1.4
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
Query: 83 GYPLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRGYDIWLWNARG 126
G P++ +HG S + V L + GY + ++ RG
Sbjct: 27 GKPVVLIHGWPLSGRSWE------YQVPALVEAGYRVITYDRRG 64
>1xpj_A Hypothetical protein; structural genomics, MCSG, protein STR
initiative, PSI, midwest center for structural genomics,
UN function; HET: TLA; 2.30A {Vibrio cholerae} SCOP:
c.108.1.18
Length = 126
Score = 27.9 bits (62), Expect = 1.4
Identities = 8/56 (14%), Positives = 21/56 (37%), Gaps = 8/56 (14%)
Query: 104 PSVDIVFLLWKRGYDIWLWNARGN--------LYSREHVNLTTKQSKFYQFSYHEM 151
++ + + G++I + AR + + + T+ +Q Y E+
Sbjct: 28 DVIEQLREYHQLGFEIVISTARNMRTYEGNVGKINIHTLPIITEWLDKHQVPYDEI 83
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 1.90A
{Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Length = 307
Score = 28.6 bits (64), Expect = 1.6
Identities = 17/117 (14%), Positives = 37/117 (31%), Gaps = 10/117 (8%)
Query: 67 TKDGYILTNFRIPNPGGYPLLFLHGLTSSSDCFLGRNPSVDIV--FLLWKRGYDIWLWNA 124
+ + +I GG P + + + + + FL+ KRG ++
Sbjct: 157 MQGKAYIYTEKIKGWGGLP------IGTEGRMIGILHDELSALAIFLMMKRGVEVIPVYI 210
Query: 125 RGNLYSREHVNLTTKQSKFYQFSYHEMGLYDTPA-LIDYILAETGHKTLITLGHSLG 180
+ + E V K Y + + + ++ + G K +I G
Sbjct: 211 GKDDKNLEKVRSLWNLLKRYSYGSKGFLVVAESFDRVLKLIRDFGVKGVIK-GLRPN 266
>1tgl_A Triacyl-glycerol acylhydrolase; carboxylic esterase; 1.90A
{Rhizomucor miehei} SCOP: c.69.1.17 PDB: 4tgl_A 5tgl_A*
3tgl_A
Length = 269
Score = 28.7 bits (64), Expect = 1.6
Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 6/105 (5%)
Query: 80 NPGGYPLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRGYDI---WLWNARGNLYSREHVNL 136
+ L ++ + R S +++++ RG W+ + S V+
Sbjct: 46 TEDLKIIKTWSTLIYDTNAMVARGDSEKTIYIVF-RGSSSIRNWIADLTFVPVSYPPVSG 104
Query: 137 TTKQSKFYQFSYHEMGLYDTPALIDYILAETGHKTLITLGHSLGS 181
T F SY E+ + A + + + GHSLG
Sbjct: 105 TKVHKGFLD-SYGEV-QNELVATVLDQFKQYPSYKVAVTGHSLGG 147
>3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga
maritima} PDB: 3doi_A
Length = 380
Score = 28.9 bits (64), Expect = 1.8
Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 21/123 (17%)
Query: 84 YPL-LFLHGLTSSSDCFLGRNPSVDIVFLLWKRGYDIWLWNARGNLY--------SREHV 134
YPL +FLHG G + + + + RG +W ++ +
Sbjct: 174 YPLVVFLHGA--------GERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLAPQCPPNS 225
Query: 135 NLTTKQSKFYQFSYHEMGLYDTPALIDYILAETG---HKTLITLGHSLGSTNVLIATSLR 191
+ +T + E L +I +L E ++ IT G S+G A
Sbjct: 226 SWSTLFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYIT-GLSMGGYGTWTAIMEF 284
Query: 192 PEY 194
PE
Sbjct: 285 PEL 287
>3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase;
2.60A {Pseudomonas putida}
Length = 264
Score = 28.6 bits (64), Expect = 1.8
Identities = 5/20 (25%), Positives = 6/20 (30%)
Query: 80 NPGGYPLLFLHGLTSSSDCF 99
+P L L G F
Sbjct: 18 DPHAPTLFLLSGWCQDHRLF 37
>3r0v_A Alpha/beta hydrolase fold protein; structural genomics,
PSI-biology, protein structure initiati alpha/beta
hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus}
Length = 262
Score = 28.5 bits (64), Expect = 1.9
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 11/65 (16%)
Query: 63 HKVTTKDGYILTNFRIPNPG-GYPLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRGYDIWL 121
V + DG + F G G P++ + G S+ + + +
Sbjct: 5 QTVPSSDGTPI-AFERS--GSGPPVVLVGGALSTRAGG-------APLAERLAPHFTVIC 54
Query: 122 WNARG 126
++ RG
Sbjct: 55 YDRRG 59
>1wm1_A Proline iminopeptidase; complex with inhibitor, hydrolase; HET:
PTB; 2.10A {Serratia marcescens} SCOP: c.69.1.7 PDB:
1qtr_A* 1x2b_A* 1x2e_A*
Length = 317
Score = 28.2 bits (62), Expect = 2.4
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 80 NPGGYPLLFLHG 91
NP G P +F+HG
Sbjct: 34 NPNGKPAVFIHG 45
>2xt0_A Haloalkane dehalogenase; hydrolase, alpha-beta hydrolase fold;
1.90A {Plesiocystis pacifica}
Length = 297
Score = 28.2 bits (63), Expect = 2.6
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 14/67 (20%)
Query: 57 GYPAEEHKVTTKDGYILTNFRI------PNPGGYPLLFLHGLTSSSDCFLGRNPSVDIVF 110
+P H + G+ R+ P + L LHG S S FL R ++
Sbjct: 16 DFPYAPHYLEGLPGF--EGLRMHYVDEGPRDAEHTFLCLHGEPSWS--FLYRK----MLP 67
Query: 111 LLWKRGY 117
+ G
Sbjct: 68 VFTAAGG 74
>3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase
BPO-A2 and matrix...; protein design,
bionanotechnology; 3.00A {Streptomyces aureofaciens}
PDB: 4d9j_A
Length = 456
Score = 28.2 bits (63), Expect = 3.1
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 83 GYPLLFLHGLTSSSDCF 99
G P++ +HG S +
Sbjct: 24 GVPVVLIHGFPLSGHSW 40
>3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2,
structural genomics, protein structure initiative,
midwest for structural genomics; 2.00A {Oenococcus
oeni}
Length = 272
Score = 27.8 bits (62), Expect = 3.1
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 83 GYPLLFLHGLTSSSD 97
G P++FLHGL+
Sbjct: 21 GTPIIFLHGLSLDKQ 35
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane,
transport protein; HET: NAG BMA MAN; 2.50A {Rattus
norvegicus}
Length = 384
Score = 27.8 bits (61), Expect = 4.0
Identities = 4/32 (12%), Positives = 9/32 (28%)
Query: 18 QVRKVISGVVGAASSVTSIQVANLLRLFKIPQ 49
Q K + + G T + + +
Sbjct: 63 QFSKGVYAIFGFYERRTVNMLTSFCGALHVCF 94
>4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 1.50A {Pseudomonas aeruginosa}
Length = 315
Score = 27.5 bits (61), Expect = 4.1
Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 19/115 (16%)
Query: 80 NPGGYPLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRGYDIWLWNARGNLYSREHVNLTTK 139
G +L +HG + + + +L GY + + G + + +
Sbjct: 43 KANGRTILLMHGKNFCAGTWE------RTIDVLADAGYRVIAVDQVG--FCK------SS 88
Query: 140 QSKFYQFSYHEMGLYDTPALIDYILAETGHKTLITLGHSLGSTNVLIATSLRPEY 194
+ YQ+S+ ++ +T AL++ + G +GHS+G L P
Sbjct: 89 KPAHYQYSFQQLAA-NTHALLERL----GVARASVIGHSMGGMLATRYALLYPRQ 138
>1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free
haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12
PDB: 1hl7_A*
Length = 279
Score = 27.4 bits (61), Expect = 4.1
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 83 GYPLLFLHGLTSSSDCF 99
G P++ +HG +
Sbjct: 23 GQPVVLIHGYPLDGHSW 39
>3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase,
hydrolase; 1.90A {Mycobacterium tuberculosis} PDB:
3e3a_A 3hys_A 3hzo_A
Length = 293
Score = 27.3 bits (61), Expect = 4.4
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 83 GYPLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRGYDIWLWNARG 126
G P++F+ G + + V GY ++ RG
Sbjct: 43 GDPVVFIAGRGGAGRTWHPH-----QVPAFLAAGYRCITFDNRG 81
>3o21_A Glutamate receptor 3; periplasmatic binding protein,
oligomerization, membrane, TR protein; HET: NAG; 2.20A
{Rattus norvegicus} PDB: 3p3w_A
Length = 389
Score = 27.5 bits (60), Expect = 4.5
Identities = 2/38 (5%), Positives = 11/38 (28%)
Query: 12 YHCNKTQVRKVISGVVGAASSVTSIQVANLLRLFKIPQ 49
+ +Q + + + G ++ + +
Sbjct: 59 TNAFCSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSF 96
>1wdd_A Ribulose bisphosphate carboxylase large chain; rubisco,
photosynthesis, alpha/beta barrel, N-methylmethioni
translational modification, lyase; HET: KCX CAP; 1.35A
{Oryza sativa} SCOP: c.1.14.1 d.58.9.1 PDB: 3axk_A*
3axm_A* 1rlc_L* 4rub_A* 3rub_L 1ej7_L 1aa1_L* 1aus_L
1rbo_L* 1rco_L* 1rcx_L* 1rxo_L* 1gk8_A* 1ir2_A* 1uzd_A*
1uzh_A* 2v69_A* 1uwa_A* 2v63_A* 2v67_A* ...
Length = 477
Score = 27.3 bits (60), Expect = 4.7
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 10/48 (20%)
Query: 48 PQTEIIRYWGYPA--EEHKVT-------TKDGYILTNFRI-PNPGGYP 85
PQTE G+ A +++K+T TKD IL FR+ P PG P
Sbjct: 3 PQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPP 50
>1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta
hydrolase fold, mutant M99T; 1.50A {Streptomyces
aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A
Length = 277
Score = 27.3 bits (61), Expect = 4.7
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 83 GYPLLFLHGLTSSSDCF 99
G P++ +HG S +
Sbjct: 23 GQPVVLIHGFPLSGHSW 39
>3llc_A Putative hydrolase; structural genomics, joint center for ST
genomics, JCSG, protein structure initiative, PSI-2;
HET: MSE PG4; 1.80A {Agrobacterium vitis}
Length = 270
Score = 27.4 bits (60), Expect = 5.1
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 57 GYPAEEHKVTTKDG----YILTNFRIPNPGGYP-LLFLHGLTSS 95
G P E H +T G I R P P ++L G S
Sbjct: 6 GRPIETHAITVGQGSDARSIAALVRAPAQDERPTCIWLGGYRSD 49
>3ds8_A LIN2722 protein; unkonwn function, structural genomics, PSI, MCSG,
P structure initiative; 1.80A {Listeria innocua}
Length = 254
Score = 27.1 bits (59), Expect = 5.4
Identities = 13/105 (12%), Positives = 32/105 (30%), Gaps = 14/105 (13%)
Query: 85 PLLFLHGLTSSSDCF------LGRNPSV---DIVFLLWKRGYDIWLWNARGNLYSREHVN 135
P++ +HG ++ L + + G + G L
Sbjct: 5 PIILIHGSGGNASSLDKMADQLMNEYRSSNEALTMTVNSEGKIKF----EGKLTKDAKRP 60
Query: 136 LTTKQSKFYQFSYHEMGLYDTPALIDYILAETGHKTLITLGHSLG 180
+ + Q + + + ++ + + G + +GHS G
Sbjct: 61 IIKFGFEQNQATPDDWSKWLK-IAMEDLKSRYGFTQMDGVGHSNG 104
>3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, alpha-beta hydrolase fold,
hydrolase; 2.00A {Oleispira antarctica}
Length = 282
Score = 26.8 bits (60), Expect = 6.0
Identities = 15/108 (13%), Positives = 33/108 (30%), Gaps = 21/108 (19%)
Query: 75 NFRIPNPGGYPLLFLHGLTSSSDCFLGRNPSVDIVFLLWKRGYDIWLWNARGNLYSREHV 134
N I G +L HG + + + ++ + + +++ G+ S
Sbjct: 20 NINITGGGEKTVLLAHGFGCDQNMW-------RFMLPELEKQFTVIVFDYVGSGQSD--- 69
Query: 135 NLTTKQSKFYQFSYHEMGLY--DTPALIDYILAETGHKTLITLGHSLG 180
F Y + Y D ++ + +GHS+
Sbjct: 70 -----LESFSTKRYSSLEGYAKDVEEILV----ALDLVNVSIIGHSVS 108
>2psd_A Renilla-luciferin 2-monooxygenase; alpha/beta-hydrolase,
luciferase, oxidoreductase; 1.40A {Renilla reniformis}
PDB: 2pse_A 2psj_A* 2psh_A 2psf_A
Length = 318
Score = 27.0 bits (60), Expect = 6.2
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 51 EIIRYWGYPAEEHKVTTKDGYILTNFRIPNPG-GYPLLFLHGLTSSSDCFLGRN 103
+I + A ++ D +I N+ ++FLHG +SS +L R+
Sbjct: 12 RMITGPQWWARCKQMNVLDSFI--NYYDSEKHAENAVIFLHGNATSS--YLWRH 61
>1mj5_A 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; LINB, haloalkane
dehalogenase, 1, 3, 4, 4-cyclohexadiene dehalogenase;
0.95A {Sphingomonas paucimobilis} SCOP: c.69.1.8 PDB:
1cv2_A 1d07_A 2bfn_A 1g42_A* 1g4h_A* 1g5f_A* 1iz7_A
1iz8_A* 1k5p_A 1k63_A 1k6e_A
Length = 302
Score = 27.0 bits (60), Expect = 6.4
Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 16/53 (30%)
Query: 57 GYPAEEHKVTTKDGYILTNFRI------PNPGGYPLLFLHGLTSSSDCFLGRN 103
P E K G R+ P+LF HG +SS +L RN
Sbjct: 5 AKPFGEKKFIEIKG-----RRMAYIDEGTGD---PILFQHGNPTSS--YLWRN 47
>3ek3_A Nitroreductase; YP_211706.1, structural genom joint center for
structural genomics, JCSG, protein structu initiative,
PSI; HET: FMN MPD; 1.70A {Bacteroides fragilis nctc
9343}
Length = 190
Score = 26.2 bits (58), Expect = 8.9
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 6/42 (14%)
Query: 37 QVANLLRLFKIPQTEIIRYW---GYPAEEHKV---TTKDGYI 72
+V L +P+ + GY AE + T K G I
Sbjct: 145 EVRAYLTSLGVPENHKVYGCVALGYKAEGALLKEKTVKAGTI 186
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.418
Gapped
Lambda K H
0.267 0.0597 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,727,738
Number of extensions: 210347
Number of successful extensions: 722
Number of sequences better than 10.0: 1
Number of HSP's gapped: 692
Number of HSP's successfully gapped: 106
Length of query: 250
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 159
Effective length of database: 4,160,982
Effective search space: 661596138
Effective search space used: 661596138
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.6 bits)