BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5152
(161 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C7X|A Chain A, Hemopexin-Like Domain Of Matrix Metalloproteinase 14
Length = 196
Score = 125 bits (313), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 100/156 (64%), Gaps = 4/156 (2%)
Query: 3 YWKLTDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGY 62
+W++ ++ + +GYP I + W GLP I+ A+ K+GK FFKG K+W + S++ GY
Sbjct: 26 FWRVRNNQVMDGYPMPIGQFWRGLPASINTAYE-RKDGKFVFFKGDKHWVFDEASLEPGY 84
Query: 63 PKDISEGFTGIP-DNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSNWEG 121
PK I E G+P D IDAAL W NGK YFF+G+K+++F+ + V S YPK WEG
Sbjct: 85 PKHIKELGRGLPTDKIDAALFWMPNGKTYFFRGNKYYRFNEELR-AVDSEYPKNIKVWEG 143
Query: 122 IPDNIDAALHYTNG-YTYFFKGSQYWRFNDKSFSVN 156
IP++ + ++ +TYF+KG++YW+FN++ V
Sbjct: 144 IPESPRGSFMGSDEVFTYFYKGNKYWKFNNQKLKVE 179
Score = 76.3 bits (186), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 70/121 (57%), Gaps = 7/121 (5%)
Query: 39 NGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIPDNIDAALVWSGNGKIYFFKGSKFW 98
G+ + FK +WR + DGYP I + + G+P +I+ A +GK FFKG K W
Sbjct: 15 RGEMFVFKERWFWRVRNNQVMDGYPMPIGQFWRGLPASINTAYE-RKDGKFVFFKGDKHW 73
Query: 99 KFDPSSKPPVKSTYPKPTSNW-EGIP-DNIDAALHYT-NGYTYFFKGSQYWRFNDKSFSV 155
FD +S P YPK G+P D IDAAL + NG TYFF+G++Y+RFN++ +V
Sbjct: 74 VFDEASLEP---GYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRGNKYYRFNEELRAV 130
Query: 156 N 156
+
Sbjct: 131 D 131
>pdb|1GEN|A Chain A, C-Terminal Domain Of Gelatinase A
Length = 218
Score = 96.7 bits (239), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 82/143 (57%), Gaps = 8/143 (5%)
Query: 16 PKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIP- 74
P L++ W LP +IDA + + K FF G++YW Y+ +++ GYPK ++ G+P
Sbjct: 64 PLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWIYSASTLERGYPKPLTS--LGLPP 121
Query: 75 --DNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSN-WEGIPDNIDAALH 131
+DAA WS N K Y F G KFW+++ K + +PK ++ W IPDN+DA +
Sbjct: 122 DVQRVDAAFNWSKNKKTYIFAGDKFWRYN-EVKKKMDPGFPKLIADAWNAIPDNLDAVVD 180
Query: 132 YT-NGYTYFFKGSQYWRFNDKSF 153
G++YFFKG+ Y + ++S
Sbjct: 181 LQGGGHSYFFKGAYYLKLENQSL 203
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 67/113 (59%), Gaps = 7/113 (6%)
Query: 2 HYWKLTDDGIAEGYPKLISKSWIGLP---GQIDAAFTYSKNGKTYFFKGSKYWRY--TGK 56
YW + + GYPK ++ +GLP ++DAAF +SKN KTY F G K+WRY K
Sbjct: 97 EYWIYSASTLERGYPKPLTS--LGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRYNEVKK 154
Query: 57 SMDDGYPKDISEGFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVK 109
MD G+PK I++ + IPDN+DA + G G YFFKG+ + K + S VK
Sbjct: 155 KMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVK 207
>pdb|1RTG|A Chain A, C-terminal Domain (haemopexin-like Domain) Of Human Matrix
Metalloproteinase-2
Length = 210
Score = 96.7 bits (239), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 82/143 (57%), Gaps = 8/143 (5%)
Query: 16 PKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIP- 74
P L++ W LP +IDA + + K FF G++YW Y+ +++ GYPK ++ G+P
Sbjct: 56 PLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWIYSASTLERGYPKPLTS--LGLPP 113
Query: 75 --DNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSN-WEGIPDNIDAALH 131
+DAA WS N K Y F G KFW+++ K + +PK ++ W IPDN+DA +
Sbjct: 114 DVQRVDAAFNWSKNKKTYIFAGDKFWRYN-EVKKKMDPGFPKLIADAWNAIPDNLDAVVD 172
Query: 132 YT-NGYTYFFKGSQYWRFNDKSF 153
G++YFFKG+ Y + ++S
Sbjct: 173 LQGGGHSYFFKGAYYLKLENQSL 195
Score = 87.0 bits (214), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 67/113 (59%), Gaps = 7/113 (6%)
Query: 2 HYWKLTDDGIAEGYPKLISKSWIGLP---GQIDAAFTYSKNGKTYFFKGSKYWRY--TGK 56
YW + + GYPK ++ +GLP ++DAAF +SKN KTY F G K+WRY K
Sbjct: 89 EYWIYSASTLERGYPKPLTS--LGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRYNEVKK 146
Query: 57 SMDDGYPKDISEGFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVK 109
MD G+PK I++ + IPDN+DA + G G YFFKG+ + K + S VK
Sbjct: 147 KMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVK 199
>pdb|1CK7|A Chain A, Gelatinase A (Full-Length)
pdb|1GXD|A Chain A, Prommp-2TIMP-2 Complex
pdb|1GXD|B Chain B, Prommp-2TIMP-2 Complex
Length = 631
Score = 96.3 bits (238), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 82/143 (57%), Gaps = 8/143 (5%)
Query: 16 PKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIP- 74
P L++ W LP +IDA + + K FF G++YW Y+ +++ GYPK ++ G+P
Sbjct: 477 PLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWIYSASTLERGYPKPLTS--LGLPP 534
Query: 75 --DNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSN-WEGIPDNIDAALH 131
+DAA WS N K Y F G KFW+++ K + +PK ++ W IPDN+DA +
Sbjct: 535 DVQRVDAAFNWSKNKKTYIFAGDKFWRYN-EVKKKMDPGFPKLIADAWNAIPDNLDAVVD 593
Query: 132 YT-NGYTYFFKGSQYWRFNDKSF 153
G++YFFKG+ Y + ++S
Sbjct: 594 LQGGGHSYFFKGAYYLKLENQSL 616
Score = 87.0 bits (214), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 72/126 (57%), Gaps = 9/126 (7%)
Query: 2 HYWKLTDDGIAEGYPKLISKSWIGLP---GQIDAAFTYSKNGKTYFFKGSKYWRY--TGK 56
YW + + GYPK ++ +GLP ++DAAF +SKN KTY F G K+WRY K
Sbjct: 510 EYWIYSASTLERGYPKPLTS--LGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRYNEVKK 567
Query: 57 SMDDGYPKDISEGFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPT 116
MD G+PK I++ + IPDN+DA + G G YFFKG+ + K + S VK +
Sbjct: 568 KMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVK--FGSIK 625
Query: 117 SNWEGI 122
S+W G
Sbjct: 626 SDWLGC 631
>pdb|1SU3|A Chain A, X-Ray Structure Of Human Prommp-1: New Insights Into
Collagenase Action
pdb|1SU3|B Chain B, X-Ray Structure Of Human Prommp-1: New Insights Into
Collagenase Action
Length = 450
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 88/161 (54%), Gaps = 19/161 (11%)
Query: 15 YPKL----ISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDI--SE 68
YP++ IS W LP ++AA+ ++ + FFKG+KYW G+++ GYPKDI S
Sbjct: 290 YPEVELNFISVFWPQLPNGLEAAYEFADRDEVRFFKGNKYWAVQGQNVLHGYPKDIYSSF 349
Query: 69 GFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTS-NWEGIPDNID 127
GF +IDAAL GK YFF +K+W++D K + YPK + ++ GI +D
Sbjct: 350 GFPRTVKHIDAALSEENTGKTYFFVANKYWRYD-EYKRSMDPGYPKMIAHDFPGIGHKVD 408
Query: 128 AALHYTNGYTYFFKGSQYWRFNDKSFSV----------NCR 158
A +G+ YFF G++ ++F+ K+ + NCR
Sbjct: 409 AVF-MKDGFFYFFHGTRQYKFDPKTKRILTLQKANSWFNCR 448
Score = 82.8 bits (203), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 63/108 (58%), Gaps = 8/108 (7%)
Query: 3 YWKLTDDGIAEGYPKLISKSWIGLP---GQIDAAFTYSKNGKTYFFKGSKYWRYTG--KS 57
YW + + GYPK I S+ G P IDAA + GKTYFF +KYWRY +S
Sbjct: 329 YWAVQGQNVLHGYPKDIYSSF-GFPRTVKHIDAALSEENTGKTYFFVANKYWRYDEYKRS 387
Query: 58 MDDGYPKDISEGFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSK 105
MD GYPK I+ F GI +DA V+ +G YFF G++ +KFDP +K
Sbjct: 388 MDPGYPKMIAHDFPGIGHKVDA--VFMKDGFFYFFHGTRQYKFDPKTK 433
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 70/142 (49%), Gaps = 20/142 (14%)
Query: 27 PGQIDAAFTY----SKNGKTYFFKGSKYWRYTGKSMDDGYPKD----ISEGFTGIPDNID 78
P D+ T+ + G+ FFK Y R + YP+ IS + +P+ ++
Sbjct: 256 PKACDSKLTFDAITTIRGEVMFFKDRFYMR-----TNPFYPEVELNFISVFWPQLPNGLE 310
Query: 79 AALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSNWEGIP---DNIDAALHYTN- 134
AA ++ ++ FFKG+K+W + V YPK + G P +IDAAL N
Sbjct: 311 AAYEFADRDEVRFFKGNKYWAVQGQN---VLHGYPKDIYSSFGFPRTVKHIDAALSEENT 367
Query: 135 GYTYFFKGSQYWRFNDKSFSVN 156
G TYFF ++YWR+++ S++
Sbjct: 368 GKTYFFVANKYWRYDEYKRSMD 389
>pdb|2CLT|A Chain A, Crystal Structure Of The Active Form (Full-Length) Of
Human Fibroblast Collagenase.
pdb|2CLT|B Chain B, Crystal Structure Of The Active Form (Full-Length) Of
Human Fibroblast Collagenase.
pdb|4AUO|A Chain A, Crystal Structure Of Mmp-1(E200a) In Complex With A
Triple- Helical Collagen Peptide
pdb|4AUO|B Chain B, Crystal Structure Of Mmp-1(E200a) In Complex With A
Triple- Helical Collagen Peptide
Length = 367
Score = 86.7 bits (213), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 15 YPKL----ISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDI--SE 68
YP++ IS W LP ++AA+ ++ + FFKG+KYW G+++ GYPKDI S
Sbjct: 210 YPEVELNFISVFWPQLPNGLEAAYEFADRDEVRFFKGNKYWAVQGQNVLHGYPKDIYSSF 269
Query: 69 GFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTS-NWEGIPDNID 127
GF +IDAAL GK YFF +K+W++D K + YPK + ++ GI +D
Sbjct: 270 GFPRTVKHIDAALSEENTGKTYFFVANKYWRYD-EYKRSMDPGYPKMIAHDFPGIGHKVD 328
Query: 128 AALHYTNGYTYFFKGSQYWRFNDKS 152
A +G+ YFF G++ ++F+ K+
Sbjct: 329 AVF-MKDGFFYFFHGTRQYKFDPKT 352
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 63/108 (58%), Gaps = 8/108 (7%)
Query: 3 YWKLTDDGIAEGYPKLISKSWIGLP---GQIDAAFTYSKNGKTYFFKGSKYWRYTG--KS 57
YW + + GYPK I S+ G P IDAA + GKTYFF +KYWRY +S
Sbjct: 249 YWAVQGQNVLHGYPKDIYSSF-GFPRTVKHIDAALSEENTGKTYFFVANKYWRYDEYKRS 307
Query: 58 MDDGYPKDISEGFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSK 105
MD GYPK I+ F GI +DA V+ +G YFF G++ +KFDP +K
Sbjct: 308 MDPGYPKMIAHDFPGIGHKVDA--VFMKDGFFYFFHGTRQYKFDPKTK 353
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 12/138 (8%)
Query: 27 PGQIDAAFTY----SKNGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIPDNIDAALV 82
P D+ T+ + G+ FFK Y R T + IS + +P+ ++AA
Sbjct: 176 PKACDSKLTFDAITTIRGEVMFFKDRFYMR-TNPFYPEVELNFISVFWPQLPNGLEAAYE 234
Query: 83 WSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSNWEGIP---DNIDAALHYTN-GYTY 138
++ ++ FFKG+K+W + V YPK + G P +IDAAL N G TY
Sbjct: 235 FADRDEVRFFKGNKYWAVQGQN---VLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTY 291
Query: 139 FFKGSQYWRFNDKSFSVN 156
FF ++YWR+++ S++
Sbjct: 292 FFVANKYWRYDEYKRSMD 309
>pdb|1FBL|A Chain A, Structure Of Full-Length Porcine Synovial Collagenase
(Mmp1) Reveals A C-Terminal Domain Containing A
Calcium-Linked, Four-Bladed Beta- Propeller
Length = 370
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 19/161 (11%)
Query: 15 YPKL----ISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDI--SE 68
YP++ IS W +P + AA+ + + FFKG+KYW G+ + GYPKDI S
Sbjct: 210 YPEVELNFISVFWPQVPNGLQAAYEIADRDEVRFFKGNKYWAVRGQDVLYGYPKDIHRSF 269
Query: 69 GFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTS-NWEGIPDNID 127
GF NIDAA+ GK YFF + W++D K + + YPK + + GI + +D
Sbjct: 270 GFPSTVKNIDAAVFEEDTGKTYFFVAHECWRYD-EYKQSMDTGYPKMIAEEFPGIGNKVD 328
Query: 128 AALHYTNGYTYFFKGSQYWRFNDKSFSV----------NCR 158
A +G+ YFF G++ ++F+ K+ + NCR
Sbjct: 329 AVFQ-KDGFLYFFHGTRQYQFDFKTKRILTLQKANSWFNCR 368
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 63/108 (58%), Gaps = 8/108 (7%)
Query: 3 YWKLTDDGIAEGYPKLISKSWIGLPG---QIDAAFTYSKNGKTYFFKGSKYWRYTG--KS 57
YW + + GYPK I +S+ G P IDAA GKTYFF + WRY +S
Sbjct: 249 YWAVRGQDVLYGYPKDIHRSF-GFPSTVKNIDAAVFEEDTGKTYFFVAHECWRYDEYKQS 307
Query: 58 MDDGYPKDISEGFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSK 105
MD GYPK I+E F GI + +DA V+ +G +YFF G++ ++FD +K
Sbjct: 308 MDTGYPKMIAEEFPGIGNKVDA--VFQKDGFLYFFHGTRQYQFDFKTK 353
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 20/143 (13%)
Query: 27 PGQIDAAFTY----SKNGKTYFFKGSKYWRYTGKSMDDGYPKD----ISEGFTGIPDNID 78
P D+ T+ + G+ FFK Y R + YP+ IS + +P+ +
Sbjct: 176 PQVCDSKLTFDAITTLRGELMFFKDRFYMR-----TNSFYPEVELNFISVFWPQVPNGLQ 230
Query: 79 AALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSNWEGIPD---NIDAALHYTN- 134
AA + ++ FFKG+K+W V YPK G P NIDAA+ +
Sbjct: 231 AAYEIADRDEVRFFKGNKYWAVRGQD---VLYGYPKDIHRSFGFPSTVKNIDAAVFEEDT 287
Query: 135 GYTYFFKGSQYWRFNDKSFSVNC 157
G TYFF + WR+++ S++
Sbjct: 288 GKTYFFVAHECWRYDEYKQSMDT 310
>pdb|1PEX|A Chain A, Collagenase-3 (Mmp-13) C-Terminal Hemopexin-Like Domain
Length = 207
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 78/145 (53%), Gaps = 11/145 (7%)
Query: 3 YWKLTDDGI-AEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDG 61
+W+L + AE + L W LP +IDAA+ + + + F+G K+W G + +G
Sbjct: 44 FWRLHPQQVDAELF--LTKSFWPELPNRIDAAYEHPSHDLIFIFRGRKFWALNGYDILEG 101
Query: 62 YPKDISEGFTGIPDN---IDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPT-S 117
YPK ISE G+P I AA+ + GK F G++ W++D ++ + YP+
Sbjct: 102 YPKKISE--LGLPKEVKKISAAVHFEDTGKTLLFSGNQVWRYDDTNH-IMDKDYPRLIEE 158
Query: 118 NWEGIPDNIDAALHYTNGYTYFFKG 142
++ GI D +D A++ NGY YFF G
Sbjct: 159 DFPGIGDKVD-AVYEKNGYIYFFNG 182
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 11/125 (8%)
Query: 37 SKNGKTYFFKGSKYWRYTGKSMDDGYPKDISEGF-TGIPDNIDAALVWSGNGKIYFFKGS 95
S G+T FK +WR + +D +++ F +P+ IDAA + I+ F+G
Sbjct: 31 SLRGETMIFKDRFFWRLHPQQVDAEL--FLTKSFWPELPNRIDAAYEHPSHDLIFIFRGR 88
Query: 96 KFWKFDPSSKPPVKSTYPKPTSNWEGIPDN---IDAALHYTN-GYTYFFKGSQYWRFNDK 151
KFW + + YPK S G+P I AA+H+ + G T F G+Q WR++D
Sbjct: 89 KFWALNGYD---ILEGYPKKISEL-GLPKEVKKISAAVHFEDTGKTLLFSGNQVWRYDDT 144
Query: 152 SFSVN 156
+ ++
Sbjct: 145 NHIMD 149
Score = 33.5 bits (75), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 7 TDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYT 54
T+ + + YP+LI + + G+ ++DA Y KNG YFF G + Y+
Sbjct: 144 TNHIMDKDYPRLIEEDFPGIGDKVDA--VYEKNGYIYFFNGPIQFEYS 189
>pdb|2JXY|A Chain A, Solution Structure Of The Hemopexin-Like Domain Of Mmp12
Length = 194
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 69/134 (51%), Gaps = 3/134 (2%)
Query: 18 LISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDI-SEGFTGIPDN 76
LIS W LP I+AA+ + + FK KYW + + YPK I S GF
Sbjct: 44 LISSLWPTLPSGIEAAYEIEARNQVFLFKDDKYWLISNLRPEPNYPKSIHSFGFPNFVKK 103
Query: 77 IDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKP-TSNWEGIPDNIDAALHYTNG 135
IDAA+ + YFF +++W++D + + YPK T N++GI IDA + N
Sbjct: 104 IDAAVFNPRFYRTYFFVDNQYWRYD-ERRQMMDPGYPKLITKNFQGIGPKIDAVFYSKNK 162
Query: 136 YTYFFKGSQYWRFN 149
Y YFF+GS + ++
Sbjct: 163 YYYFFQGSNQFEYD 176
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 9/116 (7%)
Query: 40 GKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIPDNIDAALVWSGNGKIYFFKGSKFWK 99
K +FFK +W + IS + +P I+AA +++ FK K+W
Sbjct: 20 NKIFFFKDRFFWLKVSERPKTSV-NLISSLWPTLPSGIEAAYEIEARNQVFLFKDDKYWL 78
Query: 100 FDPSSKPPVKSTYPKPTSNWEGIPD---NIDAALHYTNGY-TYFFKGSQYWRFNDK 151
P YPK ++ G P+ IDAA+ Y TYFF +QYWR++++
Sbjct: 79 ISNLRPEP---NYPKSIHSF-GFPNFVKKIDAAVFNPRFYRTYFFVDNQYWRYDER 130
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 2 HYWKLTD--DGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRY 53
YW+ + + GYPKLI+K++ G+ +IDA F YSKN YFF+GS + Y
Sbjct: 123 QYWRYDERRQMMDPGYPKLITKNFQGIGPKIDAVF-YSKNKYYYFFQGSNQFEY 175
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 76 NIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSNWEGIPDNIDAALHY-TN 134
N+ V + KI+FFK FW S +P K++ +S W +P I+AA
Sbjct: 9 NLSFDAVTTVGNKIFFFKDRFFW-LKVSERP--KTSVNLISSLWPTLPSGIEAAYEIEAR 65
Query: 135 GYTYFFKGSQYW 146
+ FK +YW
Sbjct: 66 NQVFLFKDDKYW 77
>pdb|3BA0|A Chain A, Crystal Structure Of Full-Length Human Mmp-12
Length = 365
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 69/134 (51%), Gaps = 3/134 (2%)
Query: 18 LISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDI-SEGFTGIPDN 76
LIS W LP I+AA+ + + FK KYW + + YPK I S GF
Sbjct: 215 LISSLWPTLPSGIEAAYEIEARNQVFLFKDDKYWLISNLRPEPNYPKSIHSFGFPNFVKK 274
Query: 77 IDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKP-TSNWEGIPDNIDAALHYTNG 135
IDAA+ + YFF +++W++D + + YPK T N++GI IDA + N
Sbjct: 275 IDAAVFNPRFYRTYFFVDNQYWRYD-ERRQMMDPGYPKLITKNFQGIGPKIDAVFYSKNK 333
Query: 136 YTYFFKGSQYWRFN 149
Y YFF+GS + ++
Sbjct: 334 YYYFFQGSNQFEYD 347
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 17/119 (14%)
Query: 41 KTYFFKGSKYWRYTGKSMDDGYPKD----ISEGFTGIPDNIDAALVWSGNGKIYFFKGSK 96
K +FFK +W + PK IS + +P I+AA +++ FK K
Sbjct: 192 KIFFFKDRFFWLKVSER-----PKTSVNLISSLWPTLPSGIEAAYEIEARNQVFLFKDDK 246
Query: 97 FWKFDPSSKPPVKSTYPKPTSNWEGIPD---NIDAALHYTNGY-TYFFKGSQYWRFNDK 151
+W P YPK ++ G P+ IDAA+ Y TYFF +QYWR++++
Sbjct: 247 YWLISNLRPEP---NYPKSIHSF-GFPNFVKKIDAAVFNPRFYRTYFFVDNQYWRYDER 301
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 2 HYWKLTD--DGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRY 53
YW+ + + GYPKLI+K++ G+ +IDA F YSKN YFF+GS + Y
Sbjct: 294 QYWRYDERRQMMDPGYPKLITKNFQGIGPKIDAVF-YSKNKYYYFFQGSNQFEY 346
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 19/96 (19%)
Query: 74 PDNIDAAL---------VWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSNWEGIPD 124
PDN + AL V + KI+FFK FW S +P K++ +S W +P
Sbjct: 169 PDNSEPALCDPNLSFDAVTTVGNKIFFFKDRFFW-LKVSERP--KTSVNLISSLWPTLPS 225
Query: 125 NIDAALHY-TNGYTYFFKGSQYWRFNDKSFSVNCRP 159
I+AA + FK +YW + N RP
Sbjct: 226 GIEAAYEIEARNQVFLFKDDKYWLIS------NLRP 255
>pdb|1QHU|A Chain A, Mammalian Blood Serum Haemopexin Deglycosylated And In
Complex With Its Ligand Haem
pdb|1QJS|A Chain A, Mammalian Blood Serum Haemopexin Glycosylated-Native
Protein And In Complex With Its Ligand Haem
pdb|1QJS|B Chain B, Mammalian Blood Serum Haemopexin Glycosylated-Native
Protein And In Complex With Its Ligand Haem
Length = 460
Score = 69.7 bits (169), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 72/147 (48%), Gaps = 14/147 (9%)
Query: 13 EGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTG 72
G +LIS+ W G +DAAF + Y KG K W YT + + YPK + + F G
Sbjct: 82 RGIRELISERWKNFIGPVDAAFRHGHT-SVYLIKGDKVWVYTSEKNEKVYPKSLQDEFPG 140
Query: 73 IPDNIDAALVW----SGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSNWEGIPDNIDA 128
IP +DAA+ + I FF+G++ W +D +T K +W + N +
Sbjct: 141 IPFPLDAAVECHRGECQDEGILFFQGNRKWFWD-------LTTGTKKERSWPAV-GNCTS 192
Query: 129 ALHYTNGYTYFFKGSQYWRFNDKSFSV 155
AL + Y Y F+G+Q+ RFN S V
Sbjct: 193 ALRWLGRY-YCFQGNQFLRFNPVSGEV 218
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 12/111 (10%)
Query: 2 HYWKL-TDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGK---S 57
HYW+L T+ +P I+ W P +DAAF++ K Y + +K + + K +
Sbjct: 279 HYWRLDTNRDGWHSWP--IAHQWPQGPSTVDAAFSWED--KLYLIQDTKVYVFLTKGGYT 334
Query: 58 MDDGYPKDISEGFTGIP----DNIDAALVWSGNGKIYFFKGSKFWKFDPSS 104
+ +GYPK + + P + +DAA V G+ +++ G + W D S
Sbjct: 335 LVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAGRRLWWLDLKS 385
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 36/174 (20%)
Query: 4 WKLTDDGIAEGYPKLISKSWIGLPGQIDAAFTY----SKNGKTYFFKGSKYWRYTGKSMD 59
W T + + YPK + + G+P +DAA ++ FF+G++ W + +
Sbjct: 119 WVYTSEKNEKVYPKSLQDEFPGIPFPLDAAVECHRGECQDEGILFFQGNRKWFW---DLT 175
Query: 60 DGYPKDISEGFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSS--KPP---------- 107
G K+ S G N +AL W G+ Y F+G++F +F+P S PP
Sbjct: 176 TGTKKERSWPAVG---NCTSALRWL--GRYYCFQGNQFLRFNPVSGEVPPGYPLDVRDYF 230
Query: 108 -------VKSTYPKPTSN----WEGIPDNIDAALHYTN-GYTYFFKGSQYWRFN 149
+S++ T + PD + +A+ N G TY F GS YWR +
Sbjct: 231 LSCPGRGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSGSHYWRLD 284
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 9/132 (6%)
Query: 27 PGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIPDNIDAALVWSGN 86
P + +A +G TY F GS YWR + D + I+ + P +DAA W
Sbjct: 257 PDLVLSAMVSDNHGATYVFSGSHYWRLD-TNRDGWHSWPIAHQWPQGPSTVDAAFSW--E 313
Query: 87 GKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSNWEGIP-----DNIDAALHYT-NGYTYFF 140
K+Y + +K + F + + YPK G P + +DAA + +
Sbjct: 314 DKLYLIQDTKVYVFLTKGGYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIM 373
Query: 141 KGSQYWRFNDKS 152
G + W + KS
Sbjct: 374 AGRRLWWLDLKS 385
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 37/141 (26%)
Query: 40 GKTYFFKGSKYWRYTGKS--MDDGYPKDISEGFTGIP----------------------- 74
G+ Y F+G+++ R+ S + GYP D+ + F P
Sbjct: 198 GRYYCFQGNQFLRFNPVSGEVPPGYPLDVRDYFLSCPGRGHRSSHRNSTQHGHESTRCDP 257
Query: 75 DNIDAALVWSGNGKIYFFKGSKFWKFDPSSKP----PVKSTYPKPTSNWEGIPDNIDAAL 130
D + +A+V +G Y F GS +W+ D + P+ +P+ P +DAA
Sbjct: 258 DLVLSAMVSDNHGATYVFSGSHYWRLDTNRDGWHSWPIAHQWPQG-------PSTVDAAF 310
Query: 131 HYTNGYTYFFKGSQYWRFNDK 151
+ + Y + ++ + F K
Sbjct: 311 SWEDKL-YLIQDTKVYVFLTK 330
>pdb|1ITV|A Chain A, Dimeric Form Of The Haemopexin Domain Of Mmp9
pdb|1ITV|B Chain B, Dimeric Form Of The Haemopexin Domain Of Mmp9
Length = 195
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 4/151 (2%)
Query: 3 YWKLTD-DGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDG 61
YW+ ++ G P LI+ W LP ++D+ F + K +FF G + W YTG S+
Sbjct: 27 YWRFSEGRGSRPQGPFLIADKWPALPRKLDSVFEEPLSKKLFFFSGRQVWVYTGASVLG- 85
Query: 62 YPKDISEGFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSNWEG 121
P+ + + G + SG GK+ F G + W+FD ++ + + + G
Sbjct: 86 -PRRLDKLGLGADVAQVTGALRSGRGKMLLFSGRRLWRFDVKAQMVDPRSASEVDRMFPG 144
Query: 122 IPDNIDAALHYTNGYTYFFKGSQYWRFNDKS 152
+P + + YF + YWR + +S
Sbjct: 145 VPLDTHDVFQFREK-AYFCQDRFYWRVSSRS 174
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 8/121 (6%)
Query: 41 KTYFFKGSKYWRYT-GKSMDDGYPKDISEGFTGIPDNIDAALVWSGNGKIYFFKGSKFWK 99
+ Y FK KYWR++ G+ P I++ + +P +D+ + K++FF G + W
Sbjct: 18 QLYLFKDGKYWRFSEGRGSRPQGPFLIADKWPALPRKLDSVFEEPLSKKLFFFSGRQVWV 77
Query: 100 FDPSSKPPVKSTYPKPTSNWEGIPD--NIDAALHYTNGYTYFFKGSQYWRFNDKSFSVNC 157
+ +S P+ D + AL G F G + WRF+ K+ V+
Sbjct: 78 YTGAS-----VLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSGRRLWRFDVKAQMVDP 132
Query: 158 R 158
R
Sbjct: 133 R 133
Score = 30.0 bits (66), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 76 NIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSNWEGIPDNIDAALHY-TN 134
NI A+ GN ++Y FK K+W+F + + W +P +D+ +
Sbjct: 7 NIFDAIAEIGN-QLYLFKDGKYWRFSEGRGSRPQGPF-LIADKWPALPRKLDSVFEEPLS 64
Query: 135 GYTYFFKGSQYWRFNDKS 152
+FF G Q W + S
Sbjct: 65 KKLFFFSGRQVWVYTGAS 82
>pdb|1HXN|A Chain A, 1.8 Angstroms Crystal Structure Of The C-Terminal Domain
Of Rabbit Serum Hemopexin
Length = 219
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 12/111 (10%)
Query: 2 HYWKL-TDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGK---S 57
HYW+L T+ +P I+ W P +DAAF++ K Y + +K + + K +
Sbjct: 38 HYWRLDTNRDGWHSWP--IAHQWPQGPSTVDAAFSWED--KLYLIQDTKVYVFLTKGGYT 93
Query: 58 MDDGYPKDISEGFTGIP----DNIDAALVWSGNGKIYFFKGSKFWKFDPSS 104
+ +GYPK + + P + +DAA V G+ +++ G + W D S
Sbjct: 94 LVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAGRRLWWLDLKS 144
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 9/132 (6%)
Query: 27 PGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIPDNIDAALVWSGN 86
P + +A +G TY F GS YWR + D + I+ + P +DAA W
Sbjct: 16 PDLVLSAMVSDNHGATYVFSGSHYWRL-DTNRDGWHSWPIAHQWPQGPSTVDAAFSW--E 72
Query: 87 GKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSNWEGIP-----DNIDAALHYT-NGYTYFF 140
K+Y + +K + F + + YPK G P + +DAA + +
Sbjct: 73 DKLYLIQDTKVYVFLTKGGYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIM 132
Query: 141 KGSQYWRFNDKS 152
G + W + KS
Sbjct: 133 AGRRLWWLDLKS 144
>pdb|3OYO|A Chain A, Crystal Structure Of Hemopexin Fold Protein Cp4 From Cow
Pea
pdb|3OYO|B Chain B, Crystal Structure Of Hemopexin Fold Protein Cp4 From Cow
Pea
Length = 225
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 11 IAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWR--YTGKSMDDGYPKDISE 68
IAE +P L + + ID+AF +K + Y FKG+KY R Y K + G ++I +
Sbjct: 102 IAEMFPVLNNTVF---EDSIDSAFRSTKGKEVYLFKGNKYVRIAYDSKQL-VGNIRNIGD 157
Query: 69 GF-----TGIPDNIDAALVWSGNGKIYFFKGSKFWKFD 101
GF T IDA + Y FKG + + D
Sbjct: 158 GFPVLNGTEFESGIDACFASHKEPEAYLFKGQNYVRID 195
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 66/154 (42%), Gaps = 18/154 (11%)
Query: 11 IAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKG--SKYWRYTGKSMDDGY---PKD 65
I+ G+P L + PG ID +F +++ + Y F G S Y Y + +D P
Sbjct: 45 ISSGFPSLAGTPF-AEPG-IDCSF-HTEASEAYVFSGNHSAYIDYAPGTTNDKILVGPTT 101
Query: 66 ISEGF-----TGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPK----PT 116
I+E F T D+ID+A + ++Y FKG+K+ + SK V + P
Sbjct: 102 IAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKGNKYVRIAYDSKQLVGNIRNIGDGFPV 161
Query: 117 SNWEGIPDNIDAAL-HYTNGYTYFFKGSQYWRFN 149
N IDA + Y FKG Y R +
Sbjct: 162 LNGTEFESGIDACFASHKEPEAYLFKGQNYVRID 195
Score = 33.5 bits (75), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 62/151 (41%), Gaps = 23/151 (15%)
Query: 30 IDAAFTYSKNGKTYFFKGSKYWR--YTGKSMDDGYPKD---ISEGF---TGIP---DNID 78
I+AAF S + YFF +KY R YT + D + IS GF G P ID
Sbjct: 4 INAAFRSSSEYEVYFFAKNKYVRLHYTPGASSDTILTNLRLISSGFPSLAGTPFAEPGID 63
Query: 79 AALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSNWEGIP--------DNIDAAL 130
+ + + Y F G+ D + PT+ E P D+ID+A
Sbjct: 64 CSF-HTEASEAYVFSGNHSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAF 122
Query: 131 HYTNG-YTYFFKGSQYWR--FNDKSFSVNCR 158
T G Y FKG++Y R ++ K N R
Sbjct: 123 RSTKGKEVYLFKGNKYVRIAYDSKQLVGNIR 153
>pdb|3LP9|A Chain A, Crystal Structure Of Ls24, A Seed Albumin From Lathyrus
Sativus
pdb|3LP9|B Chain B, Crystal Structure Of Ls24, A Seed Albumin From Lathyrus
Sativus
pdb|3LP9|C Chain C, Crystal Structure Of Ls24, A Seed Albumin From Lathyrus
Sativus
pdb|3LP9|D Chain D, Crystal Structure Of Ls24, A Seed Albumin From Lathyrus
Sativus
Length = 227
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 57/142 (40%), Gaps = 19/142 (13%)
Query: 27 PGQIDAAFTYSKNGKTYFFKGSKYWRYT---GKSMDDGY--PKDISEGFTGIPDN----- 76
PG I+AAF SKN + YFF KY G S D P + +GF +
Sbjct: 3 PGYINAAFRSSKNNEAYFFINDKYVLLDYAPGSSRDKVLYGPTPVRDGFKSLNQTIFGSY 62
Query: 77 -IDAALVWSGNGKIYFFKG-SKFWKFDPSSKPPVKSTYPKPTSN----WEG--IPDNIDA 128
ID + N F++ + P SK PK ++ +EG IDA
Sbjct: 63 GIDCSFDTENNEAFIFYENFCALIDYAPHSKKDKIILGPKKIADVFPFFEGTVFESGIDA 122
Query: 129 ALHYTNG-YTYFFKGSQYWRFN 149
A T G Y FKG QY R +
Sbjct: 123 AYRSTRGKEVYLFKGDQYARID 144
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 63 PKDISEGF-----TGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTS 117
PK I++ F T IDAA + ++Y FKG ++ + D S V +S
Sbjct: 101 PKKIADVFPFFEGTVFESGIDAAYRSTRGKEVYLFKGDQYARIDYGSNSMVNKEIKSISS 160
Query: 118 NWEGIPDNI-----DAAL--HYTNGYTYFFKGSQYWR 147
+ + I DAA H TN YFFK Y R
Sbjct: 161 GYPCFRNTIFESGADAAFASHKTNE-VYFFKDDHYAR 196
>pdb|3V6N|A Chain A, Crystal Structure Of A Plant Albumin From Cicer Arietinum
Showing Hemagglutination
pdb|3V6N|B Chain B, Crystal Structure Of A Plant Albumin From Cicer Arietinum
Showing Hemagglutination
pdb|4HSD|A Chain A, Crystal Structure Of A New Form Of Plant Lectin From Cicer
Arietinum At 2.45 Angstrom Resolution
pdb|4HSD|B Chain B, Crystal Structure Of A New Form Of Plant Lectin From Cicer
Arietinum At 2.45 Angstrom Resolution
Length = 227
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 12/100 (12%)
Query: 30 IDAAFTYSKNGKTYFFKGSKYWR---YTGKSMDDGYPKDISEGFTGIPDNI-----DAAL 81
IDAAF +K + Y FKG KY R T + + + K IS+GF + I D+A
Sbjct: 120 IDAAFRSTKGKEVYLFKGDKYARIDYLTNRLVQN--IKSISDGFPCLRGTIFEAGMDSAF 177
Query: 82 VWSGNGKIYFFKGSKFWK--FDPSSKPPVKSTYPKPTSNW 119
+ Y FKG + + F P S + K W
Sbjct: 178 ASHKTNEAYLFKGEYYARINFTPGSTNDIMGGVKKTLDYW 217
Score = 33.1 bits (74), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 65/154 (42%), Gaps = 18/154 (11%)
Query: 11 IAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKG----SKYWRYTGKSMDDGYPKDI 66
+ +GY K ++K+ G G ID +F N F++ Y ++ K PK I
Sbjct: 47 VRDGY-KSLAKTIFGTYG-IDCSFDTEYNEAFIFYENFCARIDYAPHSDKDKIISGPKKI 104
Query: 67 SEGF-----TGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPK----PTS 117
++ F T + IDAA + ++Y FKG K+ + D + V++ P
Sbjct: 105 ADMFPFFKGTVFENGIDAAFRSTKGKEVYLFKGDKYARIDYLTNRLVQNIKSISDGFPCL 164
Query: 118 NWEGIPDNIDAAL--HYTNGYTYFFKGSQYWRFN 149
+D+A H TN Y FKG Y R N
Sbjct: 165 RGTIFEAGMDSAFASHKTNE-AYLFKGEYYARIN 197
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 53/141 (37%), Gaps = 19/141 (13%)
Query: 28 GQIDAAFTYSKNGKTYFFKGSKYWRYT---GKSMDDGY--PKDISEGFTGIPDN------ 76
G I+AAF S+N + Y F KY G S D P + +G+ +
Sbjct: 4 GYINAAFRSSRNNEAYLFINDKYVLLDYAPGTSNDKVLYGPSFVRDGYKSLAKTIFGTYG 63
Query: 77 IDAALVWSGNGKIYFFKG-SKFWKFDPSSKPPVKSTYPKPTSNW------EGIPDNIDAA 129
ID + N F++ + P S + PK ++ + IDAA
Sbjct: 64 IDCSFDTEYNEAFIFYENFCARIDYAPHSDKDKIISGPKKIADMFPFFKGTVFENGIDAA 123
Query: 130 LHYTNG-YTYFFKGSQYWRFN 149
T G Y FKG +Y R +
Sbjct: 124 FRSTKGKEVYLFKGDKYARID 144
>pdb|3S18|A Chain A, Crystal Structure Of A Plant Albumin From Cicer Arietinum
Showing Hemagglutination
pdb|3S18|B Chain B, Crystal Structure Of A Plant Albumin From Cicer Arietinum
Showing Hemagglutination
Length = 227
Score = 33.1 bits (74), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 65/154 (42%), Gaps = 18/154 (11%)
Query: 11 IAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKG----SKYWRYTGKSMDDGYPKDI 66
+ +GY K ++K+ G G ID +F N F++ Y ++ K PK I
Sbjct: 47 VRDGY-KSLAKTIFGTYG-IDCSFDTEYNEAFIFYENFCARIDYAPHSDKDKIISGPKKI 104
Query: 67 SEGF-----TGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPK----PTS 117
++ F T + IDAA + ++Y FKG K+ + D + V++ P
Sbjct: 105 ADMFPFFKGTVFENGIDAAFRSTKGKEVYLFKGDKYARIDYLTNRLVQNKSISDTGFPCL 164
Query: 118 NWEGIPDNIDAAL--HYTNGYTYFFKGSQYWRFN 149
+D+A H TN Y FKG Y R N
Sbjct: 165 RGTIFEAGMDSAFASHKTNE-AYLFKGEYYARIN 197
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 12/100 (12%)
Query: 30 IDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIP--------DNIDAAL 81
IDAAF +K + Y FKG KY R + K IS+ TG P +D+A
Sbjct: 120 IDAAFRSTKGKEVYLFKGDKYARIDYLTNRLVQNKSISD--TGFPCLRGTIFEAGMDSAF 177
Query: 82 VWSGNGKIYFFKGSKFWK--FDPSSKPPVKSTYPKPTSNW 119
+ Y FKG + + F P S + K W
Sbjct: 178 ASHKTNEAYLFKGEYYARINFTPGSTNDIMGGVKKTLDYW 217
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 53/141 (37%), Gaps = 19/141 (13%)
Query: 28 GQIDAAFTYSKNGKTYFFKGSKYWRYT---GKSMDDGY--PKDISEGFTGIPDN------ 76
G I+AAF S+N + Y F KY G S D P + +G+ +
Sbjct: 4 GYINAAFRSSRNNEAYLFINDKYVLLDYAPGTSNDKVLYGPSFVRDGYKSLAKTIFGTYG 63
Query: 77 IDAALVWSGNGKIYFFKG-SKFWKFDPSSKPPVKSTYPKPTSNW------EGIPDNIDAA 129
ID + N F++ + P S + PK ++ + IDAA
Sbjct: 64 IDCSFDTEYNEAFIFYENFCARIDYAPHSDKDKIISGPKKIADMFPFFKGTVFENGIDAA 123
Query: 130 LHYTNG-YTYFFKGSQYWRFN 149
T G Y FKG +Y R +
Sbjct: 124 FRSTKGKEVYLFKGDKYARID 144
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 30.0 bits (66), Expect = 0.56, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 123 PDNIDAALHYTNGYTYFFKGSQYWRFNDKSFS 154
P+N+DA L YT+G T KG + R N SFS
Sbjct: 173 PENLDAYLLYTSGSTGTPKGVRVSRHNLSSFS 204
>pdb|3Q98|A Chain A, Structure Of Ygew Encoded Protein From E. Coli
Length = 399
Score = 29.6 bits (65), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 22/94 (23%)
Query: 43 YFFKGSKYWRYTGKSMDDGYPKDI---SEGFTGIPDNID------AALVWSGN--GKIYF 91
Y G+ Y R G ++DDGY + + + +ID A L W G +
Sbjct: 129 YLGAGNAYXREVGAALDDGYKQGVLPQRPALVNLQCDIDHPTQSXADLAWLREHFGSLEN 188
Query: 92 FKGSKF---WKFDPSSKPPVKSTYPKPTSNWEGI 122
KG K W + PS Y KP S +GI
Sbjct: 189 LKGKKIAXTWAYSPS--------YGKPLSVPQGI 214
>pdb|1VLG|A Chain A, Crystal Structure Of Ferritin (Tm1128) From Thermotoga
Maritima At 2.00 A Resolution
pdb|1VLG|B Chain B, Crystal Structure Of Ferritin (Tm1128) From Thermotoga
Maritima At 2.00 A Resolution
pdb|1VLG|C Chain C, Crystal Structure Of Ferritin (Tm1128) From Thermotoga
Maritima At 2.00 A Resolution
pdb|1VLG|D Chain D, Crystal Structure Of Ferritin (Tm1128) From Thermotoga
Maritima At 2.00 A Resolution
pdb|1VLG|E Chain E, Crystal Structure Of Ferritin (Tm1128) From Thermotoga
Maritima At 2.00 A Resolution
pdb|1VLG|F Chain F, Crystal Structure Of Ferritin (Tm1128) From Thermotoga
Maritima At 2.00 A Resolution
pdb|1VLG|G Chain G, Crystal Structure Of Ferritin (Tm1128) From Thermotoga
Maritima At 2.00 A Resolution
pdb|1VLG|H Chain H, Crystal Structure Of Ferritin (Tm1128) From Thermotoga
Maritima At 2.00 A Resolution
Length = 176
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 113 PKPTSNWEGIPDNIDAALHYTNGYT 137
KP SNW GI D +AAL + T
Sbjct: 88 EKPPSNWNGIKDAFEAALKHEEFVT 112
>pdb|1Z4A|A Chain A, Ferritin From T. Maritima
pdb|1Z4A|B Chain B, Ferritin From T. Maritima
pdb|1Z4A|C Chain C, Ferritin From T. Maritima
pdb|1Z4A|D Chain D, Ferritin From T. Maritima
pdb|1Z4A|E Chain E, Ferritin From T. Maritima
pdb|1Z4A|F Chain F, Ferritin From T. Maritima
pdb|1Z4A|G Chain G, Ferritin From T. Maritima
pdb|1Z4A|H Chain H, Ferritin From T. Maritima
Length = 164
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 113 PKPTSNWEGIPDNIDAALHYTNGYT 137
KP SNW GI D +AAL + T
Sbjct: 76 EKPPSNWNGIKDAFEAALKHEEFVT 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.139 0.467
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,519,380
Number of Sequences: 62578
Number of extensions: 318652
Number of successful extensions: 924
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 769
Number of HSP's gapped (non-prelim): 65
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)