Query psy5152
Match_columns 161
No_of_seqs 169 out of 1221
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 18:38:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5152.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5152hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00094 HX Hemopexin-like repe 100.0 2.7E-45 5.9E-50 274.2 19.1 156 1-159 25-183 (194)
2 cd00094 HX Hemopexin-like repe 100.0 1E-34 2.3E-39 217.0 16.4 129 25-159 3-135 (194)
3 KOG1565|consensus 100.0 2.2E-32 4.8E-37 226.2 10.9 150 2-159 310-460 (469)
4 KOG1565|consensus 99.9 2.2E-22 4.8E-27 166.8 10.5 127 26-159 288-417 (469)
5 PF00045 Hemopexin: Hemopexin; 99.5 1.4E-14 2.9E-19 83.6 3.8 44 30-74 1-44 (45)
6 PF00045 Hemopexin: Hemopexin; 99.5 1E-14 2.3E-19 84.1 3.0 44 77-124 1-45 (45)
7 smart00120 HX Hemopexin-like r 99.4 9.2E-13 2E-17 75.6 5.2 44 77-124 1-45 (45)
8 smart00120 HX Hemopexin-like r 99.4 1.4E-12 3.1E-17 74.8 5.9 44 30-74 1-44 (45)
9 PRK14131 N-acetylneuraminic ac 96.0 0.46 1E-05 38.8 14.2 82 19-106 18-117 (376)
10 TIGR03547 muta_rot_YjhT mutatr 95.6 0.9 2E-05 36.5 15.0 86 39-142 17-126 (346)
11 TIGR03548 mutarot_permut cycli 95.1 0.84 1.8E-05 36.3 12.5 63 38-106 122-197 (323)
12 PLN02193 nitrile-specifier pro 93.8 2.1 4.5E-05 36.3 12.4 106 38-154 227-354 (470)
13 TIGR03548 mutarot_permut cycli 93.2 3.5 7.7E-05 32.7 13.6 105 39-154 72-197 (323)
14 PLN02153 epithiospecifier prot 93.0 3.1 6.6E-05 33.4 11.8 18 38-55 84-108 (341)
15 PHA03098 kelch-like protein; P 92.6 3.8 8.2E-05 35.0 12.4 101 38-155 388-515 (534)
16 PHA03098 kelch-like protein; P 91.8 4.5 9.8E-05 34.5 12.0 98 39-156 294-419 (534)
17 PHA02713 hypothetical protein; 91.1 4.4 9.5E-05 35.1 11.2 29 126-154 455-492 (557)
18 PLN02193 nitrile-specifier pro 90.6 6.2 0.00013 33.4 11.5 105 39-154 175-305 (470)
19 PHA02713 hypothetical protein; 89.1 8.7 0.00019 33.3 11.4 81 38-142 302-406 (557)
20 TIGR03547 muta_rot_YjhT mutatr 87.5 6 0.00013 31.7 9.0 59 86-154 17-96 (346)
21 PLN02153 epithiospecifier prot 87.3 14 0.00029 29.7 12.7 21 134-154 251-287 (341)
22 PRK14131 N-acetylneuraminic ac 86.4 13 0.00028 30.4 10.4 79 69-154 21-117 (376)
23 PHA02790 Kelch-like protein; P 81.3 32 0.0007 29.1 11.9 57 85-154 406-473 (480)
24 PHA02790 Kelch-like protein; P 77.6 43 0.00093 28.4 10.7 93 38-154 317-426 (480)
25 PF13964 Kelch_6: Kelch motif 76.7 6.9 0.00015 21.9 4.0 27 133-159 10-44 (50)
26 COG3055 Uncharacterized protei 74.5 48 0.001 27.4 10.0 67 20-94 27-100 (381)
27 KOG4499|consensus 71.7 26 0.00056 27.5 7.0 78 76-156 158-246 (310)
28 PF08450 SGL: SMP-30/Gluconola 68.3 18 0.00039 27.3 5.8 69 85-154 143-216 (246)
29 KOG4441|consensus 61.7 1.1E+02 0.0024 26.8 10.8 115 23-155 361-503 (571)
30 COG3055 Uncharacterized protei 60.4 50 0.0011 27.3 7.0 79 68-154 28-124 (381)
31 cd08988 GH43_ABN Glycosyl hydr 59.6 57 0.0012 25.4 7.2 66 75-140 118-189 (279)
32 KOG4693|consensus 44.0 1.2E+02 0.0027 24.3 6.6 61 75-144 241-312 (392)
33 KOG4441|consensus 40.8 2.5E+02 0.0054 24.6 11.8 103 39-157 332-458 (571)
34 COG4841 Uncharacterized protei 37.7 1.2E+02 0.0025 19.9 5.4 58 97-159 28-85 (95)
35 PF13418 Kelch_4: Galactose ox 36.2 75 0.0016 17.2 3.7 27 129-155 7-41 (49)
36 PF14564 Membrane_bind: Membra 35.0 52 0.0011 22.3 3.0 32 125-156 50-83 (110)
37 PF11525 CopK: Copper resistan 34.1 1.2E+02 0.0026 18.9 5.5 52 86-152 15-66 (73)
38 PF14583 Pectate_lyase22: Olig 33.1 2.1E+02 0.0045 24.0 6.7 64 85-155 45-114 (386)
39 TIGR02604 Piru_Ver_Nterm putat 32.7 2.7E+02 0.0058 22.6 12.6 70 85-156 81-177 (367)
40 PF13415 Kelch_3: Galactose ox 29.1 93 0.002 17.0 3.0 12 143-154 19-30 (49)
41 cd08988 GH43_ABN Glycosyl hydr 29.1 2.7E+02 0.0059 21.5 7.7 65 28-93 118-190 (279)
42 PHA00147 upper collar protein 27.4 18 0.00039 28.8 -0.3 29 118-146 40-72 (308)
43 PF07494 Reg_prop: Two compone 27.3 62 0.0013 15.2 1.7 17 125-141 6-22 (24)
44 KOG1230|consensus 27.0 3E+02 0.0064 23.6 6.6 33 123-155 121-166 (521)
45 PF06977 SdiA-regulated: SdiA- 24.8 3.3E+02 0.0072 21.1 7.2 71 75-149 171-248 (248)
46 cd08989 GH43_XYL Glycosyl hydr 23.5 3E+02 0.0064 21.2 5.9 20 29-48 117-136 (269)
47 cd09001 GH43_XYL_2 Glycosyl hy 20.1 4.1E+02 0.0089 20.4 6.9 65 28-93 119-188 (269)
No 1
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=100.00 E-value=2.7e-45 Score=274.18 Aligned_cols=156 Identities=48% Similarity=0.993 Sum_probs=142.2
Q ss_pred CEEEEEeCCccCcCCCeeccccCCCCCCCCcEEEEEccCCeEEEEECCEEEEEcCCccCCCCceecCCCCCCCC--CCcc
Q psy5152 1 LHYWKLTDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIP--DNID 78 (161)
Q Consensus 1 ~~~W~~~~~~~~~g~P~~i~~~w~glp~~iDAa~~~~~~g~~y~Fkg~~~w~~~~~~~~~g~P~~i~~~~~glp--~~id 78 (161)
.+||+++.. ...++|++|++.||++|++||||++++.++++|||||++||+|+...++.+||+.|++ |...+ .+||
T Consensus 25 ~~~w~~~~~-~~~~~p~~I~~~w~~~p~~IDAa~~~~~~~~~yfFkg~~yw~~~~~~~~~~~Pk~i~~-~~~~~~~~~iD 102 (194)
T cd00094 25 RYFWRLSPG-KPPGSPFLISSFWPSLPSPVDAAFERPDTGKIYFFKGDKYWVYTGKNLEPGYPKPISD-LGFPPTVKQID 102 (194)
T ss_pred CEEEEEeCC-CCCCCCeEhhhhCCCCCCCccEEEEECCCCEEEEECCCEEEEEcCcccccCCCcchhh-cCCCCCCCCcc
Confidence 379999877 7788999999999999999999999965699999999999999998889999999998 54443 9999
Q ss_pred ceEEEccCCeEEEEECCeEEEEcCCCCCCcCCCCCccCCC-CCCCCCCCCeEEEeCCCeEEEEECCeEEEEeCCCceeec
Q psy5152 79 AALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSN-WEGIPDNIDAALHYTNGYTYFFKGSQYWRFNDKSFSVNC 157 (161)
Q Consensus 79 Aa~~~~~~~~~yfFkg~~y~~~d~~~~~~~~~gyP~~i~~-w~g~p~~idaa~~~~~g~~yff~g~~y~r~~~~~~~v~~ 157 (161)
|||.++.++++|||+|++||+||..+++ ++++||+.|++ |+|||.+|||||++.+|++|||+|++|||||..+++|+.
T Consensus 103 AA~~~~~~~~~yfFkg~~y~ry~~~~~~-v~~~yP~~i~~~w~g~p~~idaa~~~~~~~~yfF~g~~y~~~d~~~~~~~~ 181 (194)
T cd00094 103 AALRWPDNGKTYFFKGDKYWRYDEKTQK-MDPGYPKLIETDFPGVPDKVDAAFRWLDGYYYFFKGDQYWRFDPRSKEVRV 181 (194)
T ss_pred EEEEEcCCCEEEEEeCCEEEEEeCCCcc-ccCCCCcchhhcCCCcCCCcceeEEeCCCcEEEEECCEEEEEeCccceecC
Confidence 9999976899999999999999998777 88999999998 999999999999997799999999999999999988776
Q ss_pred CC
Q psy5152 158 RP 159 (161)
Q Consensus 158 ~~ 159 (161)
|+
T Consensus 182 ~~ 183 (194)
T cd00094 182 GY 183 (194)
T ss_pred Cc
Confidence 54
No 2
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=100.00 E-value=1e-34 Score=217.00 Aligned_cols=129 Identities=40% Similarity=0.749 Sum_probs=114.4
Q ss_pred CCCC-CCcEEEEEccCCeEEEEECCEEEEEcCCccCCCCceecCCCCCCCCCCccceEEEccCCeEEEEECCeEEEEcCC
Q psy5152 25 GLPG-QIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPS 103 (161)
Q Consensus 25 glp~-~iDAa~~~~~~g~~y~Fkg~~~w~~~~~~~~~g~P~~i~~~~~glp~~idAa~~~~~~~~~yfFkg~~y~~~d~~ 103 (161)
.|+. .||||++. +|++|||||++||+++.. ...++|+.|++.|+++|.+||||+.+..++++|||||++||+|+..
T Consensus 3 ~C~~~~iDA~~~~--~g~~y~FkG~~~w~~~~~-~~~~~p~~I~~~w~~~p~~IDAa~~~~~~~~~yfFkg~~yw~~~~~ 79 (194)
T cd00094 3 ACDPLSFDAVTTL--RGELYFFKGRYFWRLSPG-KPPGSPFLISSFWPSLPSPVDAAFERPDTGKIYFFKGDKYWVYTGK 79 (194)
T ss_pred cCCCCcCCeEEEe--CCEEEEEeCCEEEEEeCC-CCCCCCeEhhhhCCCCCCCccEEEEECCCCEEEEECCCEEEEEcCc
Confidence 3665 79999997 399999999999999987 6778999999999999999999999976699999999999999987
Q ss_pred CCCCcCCCCCccCCCCCCC--CCCCCeEEEeC-CCeEEEEECCeEEEEeCCCceeecCC
Q psy5152 104 SKPPVKSTYPKPTSNWEGI--PDNIDAALHYT-NGYTYFFKGSQYWRFNDKSFSVNCRP 159 (161)
Q Consensus 104 ~~~~~~~gyP~~i~~w~g~--p~~idaa~~~~-~g~~yff~g~~y~r~~~~~~~v~~~~ 159 (161)
+ ++.+||+.|++|... +.+|||||.+. +|++|||+|++|||||..+++|+.|+
T Consensus 80 ~---~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~~y~ry~~~~~~v~~~y 135 (194)
T cd00094 80 N---LEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGDKYWRYDEKTQKMDPGY 135 (194)
T ss_pred c---cccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCCEEEEEeCCCccccCCC
Confidence 5 668999999884332 28899999996 89999999999999999999998774
No 3
>KOG1565|consensus
Probab=99.98 E-value=2.2e-32 Score=226.19 Aligned_cols=150 Identities=41% Similarity=0.912 Sum_probs=137.8
Q ss_pred EEEEEeCCccCcCCCeeccccCCCCCCCCcEEEEEccCCeEEEEECCEEEEEcCCccCCCCceecCCCCCCCCCC-ccce
Q psy5152 2 HYWKLTDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIPDN-IDAA 80 (161)
Q Consensus 2 ~~W~~~~~~~~~g~P~~i~~~w~glp~~iDAa~~~~~~g~~y~Fkg~~~w~~~~~~~~~g~P~~i~~~~~glp~~-idAa 80 (161)
+|||+...+ ..++|++|+.+|++||+.||||++ .++++|||+|+++|.|.+.++..|||+.|.+....++.. ||||
T Consensus 310 ~~Wr~~~~~-~~~~p~~I~~~w~glP~~vdAa~e--~~~~~~ffkg~~~w~~~~~~~~~gypr~l~~~~~~~~~~~idaa 386 (469)
T KOG1565|consen 310 HFWRLTTSG-DGREPRPISRFWPGLPGAVDAAYE--WDGKIYFFKGAQFWSYAGYTLVPGYPKKLYRSVGFPPRGRIDAA 386 (469)
T ss_pred eeEeeeccC-cCCCcccHhhcCCCCcchhhhhhh--ccCcEEEecCCeeEEEecccccCCCCcchhhccccCCCCceeee
Confidence 699999988 878999999999999999999999 589999999999999999999999999999865445533 9999
Q ss_pred EEEccCCeEEEEECCeEEEEcCCCCCCcCCCCCccCCCCCCCCCCCCeEEEeCCCeEEEEECCeEEEEeCCCceeecCC
Q psy5152 81 LVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSNWEGIPDNIDAALHYTNGYTYFFKGSQYWRFNDKSFSVNCRP 159 (161)
Q Consensus 81 ~~~~~~~~~yfFkg~~y~~~d~~~~~~~~~gyP~~i~~w~g~p~~idaa~~~~~g~~yff~g~~y~r~~~~~~~v~~~~ 159 (161)
+.+..++++|||+|++||+||+.++. ++++||+.|..|+|+ +||++. .++.+|||+|++||+||...++|+.+.
T Consensus 387 ~~~~~~~kt~ff~g~~~wr~d~~~~~-~d~~~p~~~~~~~gi---~~a~~~-~~~~~Yff~g~~y~~~d~~~~~v~~~~ 460 (469)
T KOG1565|consen 387 RFWPANGKTYFFSGRRYWRYDEKSRA-MDWGYPKWIHKFPGI---GDASFS-NGGSVYFFSGPKYYRYDDRNLRVEPPY 460 (469)
T ss_pred EeccCCCceEEEecceeeeehhhhcc-cccCCCcchhhccCc---cchhhh-cCceEEEEeCCeeEeeCchHhhccccC
Confidence 99998999999999999999999988 999999999888888 899988 678999999999999999988888774
No 4
>KOG1565|consensus
Probab=99.88 E-value=2.2e-22 Score=166.85 Aligned_cols=127 Identities=42% Similarity=0.798 Sum_probs=111.8
Q ss_pred CCCCCcEEEEEccCCeEEEEECCEEEEEcCCccCCCCceecCCCCCCCCCCccceEEEccCCeEEEEECCeEEEEcCCCC
Q psy5152 26 LPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSK 105 (161)
Q Consensus 26 lp~~iDAa~~~~~~g~~y~Fkg~~~w~~~~~~~~~g~P~~i~~~~~glp~~idAa~~~~~~~~~yfFkg~~y~~~d~~~~ 105 (161)
|..++||+.+. .+++++|||+..+|+..... ..++|+.|+..|+|||..||||++ ..+++|||+|++||.|...+
T Consensus 288 ~s~~fdav~~~-~~g~~~ffk~~~~Wr~~~~~-~~~~p~~I~~~w~glP~~vdAa~e--~~~~~~ffkg~~~w~~~~~~- 362 (469)
T KOG1565|consen 288 CSGHFDAVTTD-RHGETYFFKGRHFWRLTTSG-DGREPRPISRFWPGLPGAVDAAYE--WDGKIYFFKGAQFWSYAGYT- 362 (469)
T ss_pred CCCCcceEeec-cccceEEecCceeEeeeccC-cCCCcccHhhcCCCCcchhhhhhh--ccCcEEEecCCeeEEEeccc-
Confidence 33479999987 56899999999999999877 778999999999999999999999 57899999999999999876
Q ss_pred CCcCCCCCccCCC-CCCCCCC-CCeEEEe-CCCeEEEEECCeEEEEeCCCceeecCC
Q psy5152 106 PPVKSTYPKPTSN-WEGIPDN-IDAALHY-TNGYTYFFKGSQYWRFNDKSFSVNCRP 159 (161)
Q Consensus 106 ~~~~~gyP~~i~~-w~g~p~~-idaa~~~-~~g~~yff~g~~y~r~~~~~~~v~~~~ 159 (161)
+.++|||.|.+ ....+.. ||||+.+ .++++|||+|++|||||...++++.++
T Consensus 363 --~~~gypr~l~~~~~~~~~~~idaa~~~~~~~kt~ff~g~~~wr~d~~~~~~d~~~ 417 (469)
T KOG1565|consen 363 --LVPGYPKKLYRSVGFPPRGRIDAARFWPANGKTYFFSGRRYWRYDEKSRAMDWGY 417 (469)
T ss_pred --ccCCCCcchhhccccCCCCceeeeEeccCCCceEEEecceeeeehhhhcccccCC
Confidence 66899999998 5445543 9999999 478999999999999999999888775
No 5
>PF00045 Hemopexin: Hemopexin; InterPro: IPR018487 Hemopexin (3.2.1.35 from EC) is a serum glycoprotein that binds haem and transports it to the liver for breakdown and iron recovery, after which the free hemopexin returns to the circulation []. Hemopexin prevents haem-mediated oxidative stress. Structurally hemopexin consists of two similar halves of approximately two hundred amino acid residues connected by a histidine-rich hinge region. Each half is itself formed by the repetition of a basic unit of some 35 to 45 residues. Hemopexin-like domains have been found in two other types of proteins, vitronectin [], a cell adhesion and spreading factor found in plasma and tissues, and matrixins MMP-1, MMP-2, MMP-3, MMP-9, MMP-10, MMP-11, MMP-12, MMP-14, MMP-15 and MMP-16, members of the matrix metalloproteinase family that cleave extracellular matrix constituents []. These zinc endopeptidases, which belong to MEROPS peptidase subfamily M10A, have a single hemopexin-like domain in their C-terminal section. It is suggested that the hemopexin domain facilitates binding to a variety of molecules and proteins, for example the HX repeats of some matrixins bind tissue inhibitor of metallopeptidases (TIMPs). This entry represents the repeat found in hempoxein and related domains.; PDB: 1SU3_B 2CLT_B 3V6N_B 3C7X_A 1GXD_A 1RTG_A 1CK7_A 1GEN_A 1ITV_A 2JXY_A ....
Probab=99.51 E-value=1.4e-14 Score=83.57 Aligned_cols=44 Identities=57% Similarity=1.201 Sum_probs=41.2
Q ss_pred CcEEEEEccCCeEEEEECCEEEEEcCCccCCCCceecCCCCCCCC
Q psy5152 30 IDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIP 74 (161)
Q Consensus 30 iDAa~~~~~~g~~y~Fkg~~~w~~~~~~~~~g~P~~i~~~~~glp 74 (161)
||||+++ .+|++|||||++||+|+..+++.+||+.|++.|+|||
T Consensus 1 iDAa~~~-~~g~~yfFkg~~ywr~~~~~~~~gyP~~i~~~w~glp 44 (45)
T PF00045_consen 1 IDAAFQW-GNGKTYFFKGNQYWRFDESKVDPGYPRPISDFWPGLP 44 (45)
T ss_dssp ESEEEEE-TTTEEEEEETTEEEEEETTEETTCEEEEHHHHSTTST
T ss_pred CeEEEEe-CCCcEEEEECCEEEEEcCcccCCCcCEEhhhCCCcCC
Confidence 7999999 3499999999999999998889999999999999998
No 6
>PF00045 Hemopexin: Hemopexin; InterPro: IPR018487 Hemopexin (3.2.1.35 from EC) is a serum glycoprotein that binds haem and transports it to the liver for breakdown and iron recovery, after which the free hemopexin returns to the circulation []. Hemopexin prevents haem-mediated oxidative stress. Structurally hemopexin consists of two similar halves of approximately two hundred amino acid residues connected by a histidine-rich hinge region. Each half is itself formed by the repetition of a basic unit of some 35 to 45 residues. Hemopexin-like domains have been found in two other types of proteins, vitronectin [], a cell adhesion and spreading factor found in plasma and tissues, and matrixins MMP-1, MMP-2, MMP-3, MMP-9, MMP-10, MMP-11, MMP-12, MMP-14, MMP-15 and MMP-16, members of the matrix metalloproteinase family that cleave extracellular matrix constituents []. These zinc endopeptidases, which belong to MEROPS peptidase subfamily M10A, have a single hemopexin-like domain in their C-terminal section. It is suggested that the hemopexin domain facilitates binding to a variety of molecules and proteins, for example the HX repeats of some matrixins bind tissue inhibitor of metallopeptidases (TIMPs). This entry represents the repeat found in hempoxein and related domains.; PDB: 1SU3_B 2CLT_B 3V6N_B 3C7X_A 1GXD_A 1RTG_A 1CK7_A 1GEN_A 1ITV_A 2JXY_A ....
Probab=99.51 E-value=1e-14 Score=84.05 Aligned_cols=44 Identities=55% Similarity=1.265 Sum_probs=39.6
Q ss_pred ccceEEEccCCeEEEEECCeEEEEcCCCCCCcCCCCCccCCC-CCCCCC
Q psy5152 77 IDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSN-WEGIPD 124 (161)
Q Consensus 77 idAa~~~~~~~~~yfFkg~~y~~~d~~~~~~~~~gyP~~i~~-w~g~p~ 124 (161)
||||+.+.. +++|||||++||+|+.. . ++++||+.|++ |+|+|.
T Consensus 1 iDAa~~~~~-g~~yfFkg~~ywr~~~~--~-~~~gyP~~i~~~w~glp~ 45 (45)
T PF00045_consen 1 IDAAFQWGN-GKTYFFKGNQYWRFDES--K-VDPGYPRPISDFWPGLPC 45 (45)
T ss_dssp ESEEEEETT-TEEEEEETTEEEEEETT--E-ETTCEEEEHHHHSTTSTS
T ss_pred CeEEEEeCC-CcEEEEECCEEEEEcCc--c-cCCCcCEEhhhCCCcCCC
Confidence 799999854 99999999999999998 3 77899999999 999983
No 7
>smart00120 HX Hemopexin-like repeats. Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs).
Probab=99.38 E-value=9.2e-13 Score=75.63 Aligned_cols=44 Identities=55% Similarity=1.068 Sum_probs=39.0
Q ss_pred ccceEEEccCCeEEEEECCeEEEEcCCCCCCcCCCCCccCCC-CCCCCC
Q psy5152 77 IDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSN-WEGIPD 124 (161)
Q Consensus 77 idAa~~~~~~~~~yfFkg~~y~~~d~~~~~~~~~gyP~~i~~-w~g~p~ 124 (161)
||||+.+. ++++|||||++||+|+..+ +++++|+.|++ |+++|.
T Consensus 1 iDAa~~~~-~~~~yfFkg~~yw~~~~~~---~~~~~p~~i~~~~~~lp~ 45 (45)
T smart00120 1 IDAAFELR-NGKTYFFKGDKYWRFDPKR---VDPGYPKLISSFFPGLPC 45 (45)
T ss_pred CeEEEEeC-CCeEEEEeCCEEEEEcCCc---cCCCCCeEhhhcCCCCCC
Confidence 79999986 7899999999999999764 56899999998 999883
No 8
>smart00120 HX Hemopexin-like repeats. Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs).
Probab=99.38 E-value=1.4e-12 Score=74.81 Aligned_cols=44 Identities=66% Similarity=1.187 Sum_probs=40.4
Q ss_pred CcEEEEEccCCeEEEEECCEEEEEcCCccCCCCceecCCCCCCCC
Q psy5152 30 IDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIP 74 (161)
Q Consensus 30 iDAa~~~~~~g~~y~Fkg~~~w~~~~~~~~~g~P~~i~~~~~glp 74 (161)
||||+... ++++|||||++||+++..++..++|+.|++.|+|+|
T Consensus 1 iDAa~~~~-~~~~yfFkg~~yw~~~~~~~~~~~p~~i~~~~~~lp 44 (45)
T smart00120 1 IDAAFELR-NGKTYFFKGDKYWRFDPKRVDPGYPKLISSFFPGLP 44 (45)
T ss_pred CeEEEEeC-CCeEEEEeCCEEEEEcCCccCCCCCeEhhhcCCCCC
Confidence 79999984 889999999999999987678899999999999998
No 9
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=96.01 E-value=0.46 Score=38.85 Aligned_cols=82 Identities=24% Similarity=0.472 Sum_probs=42.5
Q ss_pred ccccCCCCCCCCc--EEEEEccCCeEEEEECC---EEEEEcCCccCCCCceecCCCCCCCCCCccceEEEccCCeEEEEE
Q psy5152 19 ISKSWIGLPGQID--AAFTYSKNGKTYFFKGS---KYWRYTGKSMDDGYPKDISEGFTGIPDNIDAALVWSGNGKIYFFK 93 (161)
Q Consensus 19 i~~~w~glp~~iD--Aa~~~~~~g~~y~Fkg~---~~w~~~~~~~~~g~P~~i~~~~~glp~~idAa~~~~~~~~~yfFk 93 (161)
+...+|.||.... |+... ++++|++-|. .+|+|+-......+ ..+.. .++.| +...+... .++++|+|.
T Consensus 18 ~~~~l~~lP~~~~~~~~~~~--~~~iyv~gG~~~~~~~~~d~~~~~~~W-~~l~~-~p~~~-r~~~~~v~-~~~~IYV~G 91 (376)
T PRK14131 18 NAEQLPDLPVPFKNGTGAID--NNTVYVGLGSAGTSWYKLDLNAPSKGW-TKIAA-FPGGP-REQAVAAF-IDGKLYVFG 91 (376)
T ss_pred ecccCCCCCcCccCCeEEEE--CCEEEEEeCCCCCeEEEEECCCCCCCe-EECCc-CCCCC-cccceEEE-ECCEEEEEc
Confidence 3444577875422 33333 7899999774 67888753211111 11221 12112 22222222 357999997
Q ss_pred CC-------------eEEEEcCCCCC
Q psy5152 94 GS-------------KFWKFDPSSKP 106 (161)
Q Consensus 94 g~-------------~y~~~d~~~~~ 106 (161)
|. .+|+||..++.
T Consensus 92 G~~~~~~~~~~~~~~~v~~YD~~~n~ 117 (376)
T PRK14131 92 GIGKTNSEGSPQVFDDVYKYDPKTNS 117 (376)
T ss_pred CCCCCCCCCceeEcccEEEEeCCCCE
Confidence 62 36777766543
No 10
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=95.64 E-value=0.9 Score=36.46 Aligned_cols=86 Identities=27% Similarity=0.603 Sum_probs=44.7
Q ss_pred CCeEEEEEC---CEEEEEcCCccCCCCceecCCCCCCCC--CCccceEEEccCCeEEEEECC-------------eEEEE
Q psy5152 39 NGKTYFFKG---SKYWRYTGKSMDDGYPKDISEGFTGIP--DNIDAALVWSGNGKIYFFKGS-------------KFWKF 100 (161)
Q Consensus 39 ~g~~y~Fkg---~~~w~~~~~~~~~g~P~~i~~~~~glp--~~idAa~~~~~~~~~yfFkg~-------------~y~~~ 100 (161)
++++|++-| +.+|+|+.......+ ..+. .+| .+..+++.. .++++|++-|. ..|+|
T Consensus 17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W-~~l~----~~p~~~R~~~~~~~-~~~~iYv~GG~~~~~~~~~~~~~~~v~~Y 90 (346)
T TIGR03547 17 GDKVYVGLGSAGTSWYKLDLKKPSKGW-QKIA----DFPGGPRNQAVAAA-IDGKLYVFGGIGKANSEGSPQVFDDVYRY 90 (346)
T ss_pred CCEEEEEccccCCeeEEEECCCCCCCc-eECC----CCCCCCcccceEEE-ECCEEEEEeCCCCCCCCCcceecccEEEE
Confidence 689999876 367887742111111 1111 222 123333333 36899999873 35677
Q ss_pred cCCCCCCcCCCCCccCCCCCCC----CCCC-Ce-EEEeCCCeEEEEEC
Q psy5152 101 DPSSKPPVKSTYPKPTSNWEGI----PDNI-DA-ALHYTNGYTYFFKG 142 (161)
Q Consensus 101 d~~~~~~~~~gyP~~i~~w~g~----p~~i-da-a~~~~~g~~yff~g 142 (161)
|..++. |..+ |... .+ |+...+|++|++-|
T Consensus 91 d~~~~~------------W~~~~~~~p~~~~~~~~~~~~~g~IYviGG 126 (346)
T TIGR03547 91 DPKKNS------------WQKLDTRSPVGLLGASGFSLHNGQAYFTGG 126 (346)
T ss_pred ECCCCE------------EecCCCCCCCcccceeEEEEeCCEEEEEcC
Confidence 765543 3222 1111 12 23234899999865
No 11
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=95.13 E-value=0.84 Score=36.35 Aligned_cols=63 Identities=21% Similarity=0.475 Sum_probs=33.2
Q ss_pred cCCeEEEEECC-------EEEEEcCCccCCCCceecCCCCCCCCCCccceEEEccCCeEEEEECC------eEEEEcCCC
Q psy5152 38 KNGKTYFFKGS-------KYWRYTGKSMDDGYPKDISEGFTGIPDNIDAALVWSGNGKIYFFKGS------KFWKFDPSS 104 (161)
Q Consensus 38 ~~g~~y~Fkg~-------~~w~~~~~~~~~g~P~~i~~~~~glp~~idAa~~~~~~~~~yfFkg~------~y~~~d~~~ 104 (161)
.++++|++-|. .+++|+..+.. + ..+.. .++- .+..++... .++++|+|.|. ..++||..+
T Consensus 122 ~~~~iYv~GG~~~~~~~~~v~~yd~~~~~--W-~~~~~-~p~~-~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 122 KDGTLYVGGGNRNGKPSNKSYLFNLETQE--W-FELPD-FPGE-PRVQPVCVK-LQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred ECCEEEEEeCcCCCccCceEEEEcCCCCC--e-eECCC-CCCC-CCCcceEEE-ECCEEEEEcCCCCccccceEEEecCC
Confidence 47899999773 56777743211 0 01111 0111 122333322 46899999773 246777766
Q ss_pred CC
Q psy5152 105 KP 106 (161)
Q Consensus 105 ~~ 106 (161)
++
T Consensus 196 ~~ 197 (323)
T TIGR03548 196 NQ 197 (323)
T ss_pred Ce
Confidence 54
No 12
>PLN02193 nitrile-specifier protein
Probab=93.77 E-value=2.1 Score=36.26 Aligned_cols=106 Identities=13% Similarity=0.181 Sum_probs=53.6
Q ss_pred cCCeEEEEEC-------CEEEEEcCCccCCCCceecCCCCCCCC-CCccceEEEccCCeEEEEECC-------eEEEEcC
Q psy5152 38 KNGKTYFFKG-------SKYWRYTGKSMDDGYPKDISEGFTGIP-DNIDAALVWSGNGKIYFFKGS-------KFWKFDP 102 (161)
Q Consensus 38 ~~g~~y~Fkg-------~~~w~~~~~~~~~g~P~~i~~~~~glp-~~idAa~~~~~~~~~yfFkg~-------~y~~~d~ 102 (161)
.++++|+|-| +.+|+|+..+..- ..+... ...| .+-.+++.. .++++|+|-|. ..+.||.
T Consensus 227 ~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W---~~l~~~-~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~ 301 (470)
T PLN02193 227 IGSTLYVFGGRDASRQYNGFYSFDTTTNEW---KLLTPV-EEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNI 301 (470)
T ss_pred ECCEEEEECCCCCCCCCccEEEEECCCCEE---EEcCcC-CCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEEC
Confidence 3789999987 4578887532110 011110 0112 111122222 35799999763 3466776
Q ss_pred CCCCCcCCCCCccCCCCCCCC-CCCCeEEEeCCCeEEEEEC------CeEEEEeCCCce
Q psy5152 103 SSKPPVKSTYPKPTSNWEGIP-DNIDAALHYTNGYTYFFKG------SQYWRFNDKSFS 154 (161)
Q Consensus 103 ~~~~~~~~gyP~~i~~w~g~p-~~idaa~~~~~g~~yff~g------~~y~r~~~~~~~ 154 (161)
.+++.....-|. ..| .+-.++....++++|++-| +..+.||..+++
T Consensus 302 ~t~~W~~~~~~~------~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~ 354 (470)
T PLN02193 302 VDKKWFHCSTPG------DSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDK 354 (470)
T ss_pred CCCEEEeCCCCC------CCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCE
Confidence 554311000010 011 1112222233788999876 678999998775
No 13
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.20 E-value=3.5 Score=32.74 Aligned_cols=105 Identities=16% Similarity=0.330 Sum_probs=54.5
Q ss_pred CCeEEEEEC-------CEEEEEcCCccCCCCceecCCCCCCCCCCc-cceEEEccCCeEEEEECC-------eEEEEcCC
Q psy5152 39 NGKTYFFKG-------SKYWRYTGKSMDDGYPKDISEGFTGIPDNI-DAALVWSGNGKIYFFKGS-------KFWKFDPS 103 (161)
Q Consensus 39 ~g~~y~Fkg-------~~~w~~~~~~~~~g~P~~i~~~~~glp~~i-dAa~~~~~~~~~yfFkg~-------~y~~~d~~ 103 (161)
++++|++-| +.+|+|+-...... .... ..+.+|... .++... .++++|++-|. .+++||..
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~--~~~~-~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~ 147 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEE--LICE-TIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLE 147 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCcee--eeee-EcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCC
Confidence 788999987 35677663221100 0001 113345222 222222 36899999773 57788876
Q ss_pred CCCCcCCCCCccCCCCCCCCCCCCeEEEeCCCeEEEEECC------eEEEEeCCCce
Q psy5152 104 SKPPVKSTYPKPTSNWEGIPDNIDAALHYTNGYTYFFKGS------QYWRFNDKSFS 154 (161)
Q Consensus 104 ~~~~~~~gyP~~i~~w~g~p~~idaa~~~~~g~~yff~g~------~y~r~~~~~~~ 154 (161)
++.... +...++.+ +..++....++++|+|-|. ..++||+.+++
T Consensus 148 ~~~W~~------~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 148 TQEWFE------LPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCCeeE------CCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 544110 00111111 2233333347899999763 35789988765
No 14
>PLN02153 epithiospecifier protein
Probab=92.95 E-value=3.1 Score=33.42 Aligned_cols=18 Identities=28% Similarity=0.682 Sum_probs=13.2
Q ss_pred cCCeEEEEECC-------EEEEEcC
Q psy5152 38 KNGKTYFFKGS-------KYWRYTG 55 (161)
Q Consensus 38 ~~g~~y~Fkg~-------~~w~~~~ 55 (161)
.++++|+|-|. .++.|+.
T Consensus 84 ~~~~iyv~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 84 VGTKLYIFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred ECCEEEEECCCCCCCccCcEEEEEC
Confidence 37899999773 4677775
No 15
>PHA03098 kelch-like protein; Provisional
Probab=92.59 E-value=3.8 Score=34.97 Aligned_cols=101 Identities=19% Similarity=0.238 Sum_probs=53.3
Q ss_pred cCCeEEEEEC--------CEEEEEcCCccCCCCceecCCCCCCCC--CCccceEEEccCCeEEEEECC----------eE
Q psy5152 38 KNGKTYFFKG--------SKYWRYTGKSMDDGYPKDISEGFTGIP--DNIDAALVWSGNGKIYFFKGS----------KF 97 (161)
Q Consensus 38 ~~g~~y~Fkg--------~~~w~~~~~~~~~g~P~~i~~~~~glp--~~idAa~~~~~~~~~yfFkg~----------~y 97 (161)
.++++|+|-| +.+++|+..+-. + ..+. .+| ..--+|.. .++++|++.|. ..
T Consensus 388 ~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~--W-~~~~----~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v 458 (534)
T PHA03098 388 VNNLIYVIGGISKNDELLKTVECFSLNTNK--W-SKGS----PLPISHYGGCAIY--HDGKIYVIGGISYIDNIKVYNIV 458 (534)
T ss_pred ECCEEEEECCcCCCCcccceEEEEeCCCCe--e-eecC----CCCccccCceEEE--ECCEEEEECCccCCCCCcccceE
Confidence 4789999977 346677643210 0 0011 122 11112333 35789999763 26
Q ss_pred EEEcCCCCCCcCCCCCccCCCCCCCCCCCCeEEEeCCCeEEEEEC-------CeEEEEeCCCcee
Q psy5152 98 WKFDPSSKPPVKSTYPKPTSNWEGIPDNIDAALHYTNGYTYFFKG-------SQYWRFNDKSFSV 155 (161)
Q Consensus 98 ~~~d~~~~~~~~~gyP~~i~~w~g~p~~idaa~~~~~g~~yff~g-------~~y~r~~~~~~~v 155 (161)
++||..+++... +.. ...|..--++.. .++++|++-| +..+.||..+++=
T Consensus 459 ~~yd~~~~~W~~------~~~-~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 459 ESYNPVTNKWTE------LSS-LNFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred EEecCCCCceee------CCC-CCcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 888877654211 000 011211112233 3789999976 3578899888763
No 16
>PHA03098 kelch-like protein; Provisional
Probab=91.82 E-value=4.5 Score=34.50 Aligned_cols=98 Identities=16% Similarity=0.240 Sum_probs=53.0
Q ss_pred CCeEEEEECC--------EEEEEcCCccCCCCceecCCCCCCCC-CCccceEEEccCCeEEEEECC-------eEEEEcC
Q psy5152 39 NGKTYFFKGS--------KYWRYTGKSMDDGYPKDISEGFTGIP-DNIDAALVWSGNGKIYFFKGS-------KFWKFDP 102 (161)
Q Consensus 39 ~g~~y~Fkg~--------~~w~~~~~~~~~g~P~~i~~~~~glp-~~idAa~~~~~~~~~yfFkg~-------~y~~~d~ 102 (161)
++.+|++-|. .+|.|+..+..- ..+ +.+| .+-.++... .++++|++.|. .+++||.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W---~~~----~~~~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~ 365 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSW---NKV----PELIYPRKNPGVTV-FNNRIYVIGGIYNSISLNTVESWKP 365 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCee---eEC----CCCCcccccceEEE-ECCEEEEEeCCCCCEecceEEEEcC
Confidence 6789998763 456666432110 111 1222 122223332 36899999874 2566666
Q ss_pred CCCCCcCCCCCccCCCCCCC---CC-CCCeEEEeCCCeEEEEEC--------CeEEEEeCCCceee
Q psy5152 103 SSKPPVKSTYPKPTSNWEGI---PD-NIDAALHYTNGYTYFFKG--------SQYWRFNDKSFSVN 156 (161)
Q Consensus 103 ~~~~~~~~gyP~~i~~w~g~---p~-~idaa~~~~~g~~yff~g--------~~y~r~~~~~~~v~ 156 (161)
.+++ |..+ |. .-.++....++++|++-| +..++||+.+++-.
T Consensus 366 ~~~~------------W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 366 GESK------------WREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CCCc------------eeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 5543 2222 21 122233334789999977 45789998877643
No 17
>PHA02713 hypothetical protein; Provisional
Probab=91.10 E-value=4.4 Score=35.15 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=19.3
Q ss_pred CCeEEEeCCCeEEEEECC--------eEEEEeCCC-ce
Q psy5152 126 IDAALHYTNGYTYFFKGS--------QYWRFNDKS-FS 154 (161)
Q Consensus 126 idaa~~~~~g~~yff~g~--------~y~r~~~~~-~~ 154 (161)
..++....+|++|.+-|. ...+||+.+ ++
T Consensus 455 ~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~ 492 (557)
T PHA02713 455 IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG 492 (557)
T ss_pred ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCC
Confidence 334444447999999762 256899887 55
No 18
>PLN02193 nitrile-specifier protein
Probab=90.58 E-value=6.2 Score=33.39 Aligned_cols=105 Identities=17% Similarity=0.240 Sum_probs=53.6
Q ss_pred CCeEEEEECC---------EEEEEcCCccCCCCceecCCCCCCCCC--CccceEEEccCCeEEEEEC-------CeEEEE
Q psy5152 39 NGKTYFFKGS---------KYWRYTGKSMDDGYPKDISEGFTGIPD--NIDAALVWSGNGKIYFFKG-------SKFWKF 100 (161)
Q Consensus 39 ~g~~y~Fkg~---------~~w~~~~~~~~~g~P~~i~~~~~glp~--~idAa~~~~~~~~~yfFkg-------~~y~~~ 100 (161)
++++|+|-|. .+|+|+.....-. .+... ..+|. ...++... .++++|+|-| +.+|+|
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~---~~~~~-g~~P~~~~~~~~~v~-~~~~lYvfGG~~~~~~~ndv~~y 249 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWS---ISPAT-GDVPHLSCLGVRMVS-IGSTLYVFGGRDASRQYNGFYSF 249 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEE---eCCCC-CCCCCCcccceEEEE-ECCEEEEECCCCCCCCCccEEEE
Confidence 6789999773 3777875321100 01100 01232 22333322 3579999987 457888
Q ss_pred cCCCCCCcCCCCCccCCCCCCCCC-CCCeEEEeCCCeEEEEECC-------eEEEEeCCCce
Q psy5152 101 DPSSKPPVKSTYPKPTSNWEGIPD-NIDAALHYTNGYTYFFKGS-------QYWRFNDKSFS 154 (161)
Q Consensus 101 d~~~~~~~~~gyP~~i~~w~g~p~-~idaa~~~~~g~~yff~g~-------~y~r~~~~~~~ 154 (161)
|..+++... +..-...|. +-.++....++++|+|-|. ..+.||..+++
T Consensus 250 D~~t~~W~~------l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~ 305 (470)
T PLN02193 250 DTTTNEWKL------LTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKK 305 (470)
T ss_pred ECCCCEEEE------cCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCE
Confidence 887654110 000001121 1122222347899999763 36788887765
No 19
>PHA02713 hypothetical protein; Provisional
Probab=89.09 E-value=8.7 Score=33.33 Aligned_cols=81 Identities=14% Similarity=0.226 Sum_probs=41.8
Q ss_pred cCCeEEEEECC--------EEEEEcCCccCCCCceecCCCCCC---CC-CCccceEEEccCCeEEEEECCe-------EE
Q psy5152 38 KNGKTYFFKGS--------KYWRYTGKSMDDGYPKDISEGFTG---IP-DNIDAALVWSGNGKIYFFKGSK-------FW 98 (161)
Q Consensus 38 ~~g~~y~Fkg~--------~~w~~~~~~~~~g~P~~i~~~~~g---lp-~~idAa~~~~~~~~~yfFkg~~-------y~ 98 (161)
.++++|++-|. .+++|+... ..|.. +| .+-.++... .++++|.+.|.. +.
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~----------n~W~~~~~m~~~R~~~~~~~-~~g~IYviGG~~~~~~~~sve 370 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIEN----------KIHVELPPMIKNRCRFSLAV-IDDTIYAIGGQNGTNVERTIE 370 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCC----------CeEeeCCCCcchhhceeEEE-ECCEEEEECCcCCCCCCceEE
Confidence 37899998773 256666421 12322 22 222223322 368999998742 44
Q ss_pred EEcCCCCCCcCCCCCccCCCCCCCC---CC-CC-eEEEeCCCeEEEEEC
Q psy5152 99 KFDPSSKPPVKSTYPKPTSNWEGIP---DN-ID-AALHYTNGYTYFFKG 142 (161)
Q Consensus 99 ~~d~~~~~~~~~gyP~~i~~w~g~p---~~-id-aa~~~~~g~~yff~g 142 (161)
+||..++. |.-++ .. -. +|.. .+|++|++-|
T Consensus 371 ~Ydp~~~~------------W~~~~~mp~~r~~~~~~~-~~g~IYviGG 406 (557)
T PHA02713 371 CYTMGDDK------------WKMLPDMPIALSSYGMCV-LDQYIYIIGG 406 (557)
T ss_pred EEECCCCe------------EEECCCCCcccccccEEE-ECCEEEEEeC
Confidence 55554432 43322 11 11 2223 3799999976
No 20
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=87.52 E-value=6 Score=31.69 Aligned_cols=59 Identities=25% Similarity=0.519 Sum_probs=35.8
Q ss_pred CCeEEEEEC---CeEEEEcCCCCCCcCCCCCccCCCCCC---CC--CCCCeEEEeCCCeEEEEECC-------------e
Q psy5152 86 NGKIYFFKG---SKFWKFDPSSKPPVKSTYPKPTSNWEG---IP--DNIDAALHYTNGYTYFFKGS-------------Q 144 (161)
Q Consensus 86 ~~~~yfFkg---~~y~~~d~~~~~~~~~gyP~~i~~w~g---~p--~~idaa~~~~~g~~yff~g~-------------~ 144 (161)
++++|++.| +.+|+||..... ..|.. +| .+..++....++++|++-|. .
T Consensus 17 ~~~vyv~GG~~~~~~~~~d~~~~~----------~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~ 86 (346)
T TIGR03547 17 GDKVYVGLGSAGTSWYKLDLKKPS----------KGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDD 86 (346)
T ss_pred CCEEEEEccccCCeeEEEECCCCC----------CCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceeccc
Confidence 579999876 467888853211 01222 22 12233334447899998773 4
Q ss_pred EEEEeCCCce
Q psy5152 145 YWRFNDKSFS 154 (161)
Q Consensus 145 y~r~~~~~~~ 154 (161)
.++||+.+++
T Consensus 87 v~~Yd~~~~~ 96 (346)
T TIGR03547 87 VYRYDPKKNS 96 (346)
T ss_pred EEEEECCCCE
Confidence 7899988776
No 21
>PLN02153 epithiospecifier protein
Probab=87.31 E-value=14 Score=29.66 Aligned_cols=21 Identities=14% Similarity=0.455 Sum_probs=17.0
Q ss_pred CCeEEEEECC----------------eEEEEeCCCce
Q psy5152 134 NGYTYFFKGS----------------QYWRFNDKSFS 154 (161)
Q Consensus 134 ~g~~yff~g~----------------~y~r~~~~~~~ 154 (161)
++++|+|-|. ..|+||..+++
T Consensus 251 ~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 251 GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred CCEEEEECcccCCccccccccccccccEEEEEcCccE
Confidence 6899999773 67899988776
No 22
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=86.36 E-value=13 Score=30.39 Aligned_cols=79 Identities=20% Similarity=0.460 Sum_probs=42.5
Q ss_pred CCCCCCCCcc--ceEEEccCCeEEEEECC---eEEEEcCCCCCCcCCCCCccCCCCCCCCCCCCeEEEeCCCeEEEEEC-
Q psy5152 69 GFTGIPDNID--AALVWSGNGKIYFFKGS---KFWKFDPSSKPPVKSTYPKPTSNWEGIPDNIDAALHYTNGYTYFFKG- 142 (161)
Q Consensus 69 ~~~glp~~id--Aa~~~~~~~~~yfFkg~---~y~~~d~~~~~~~~~gyP~~i~~w~g~p~~idaa~~~~~g~~yff~g- 142 (161)
..+.||.... ||.. .++++|++-|. .+|+||..... ..+ ..+...++.| ....+....++.+|+|-|
T Consensus 21 ~l~~lP~~~~~~~~~~--~~~~iyv~gG~~~~~~~~~d~~~~~---~~W-~~l~~~p~~~-r~~~~~v~~~~~IYV~GG~ 93 (376)
T PRK14131 21 QLPDLPVPFKNGTGAI--DNNTVYVGLGSAGTSWYKLDLNAPS---KGW-TKIAAFPGGP-REQAVAAFIDGKLYVFGGI 93 (376)
T ss_pred cCCCCCcCccCCeEEE--ECCEEEEEeCCCCCeEEEEECCCCC---CCe-EECCcCCCCC-cccceEEEECCEEEEEcCC
Confidence 3466773211 3333 36799998764 67888864311 001 0111122222 223333334789999876
Q ss_pred ------------CeEEEEeCCCce
Q psy5152 143 ------------SQYWRFNDKSFS 154 (161)
Q Consensus 143 ------------~~y~r~~~~~~~ 154 (161)
+..++||..+++
T Consensus 94 ~~~~~~~~~~~~~~v~~YD~~~n~ 117 (376)
T PRK14131 94 GKTNSEGSPQVFDDVYKYDPKTNS 117 (376)
T ss_pred CCCCCCCceeEcccEEEEeCCCCE
Confidence 348899988776
No 23
>PHA02790 Kelch-like protein; Provisional
Probab=81.30 E-value=32 Score=29.15 Aligned_cols=57 Identities=14% Similarity=0.205 Sum_probs=33.2
Q ss_pred cCCeEEEEECCeEEEEcCCCCCCcCCCCCccCCCCCCC---CC-CCCeEEEeCCCeEEEEEC-------CeEEEEeCCCc
Q psy5152 85 GNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSNWEGI---PD-NIDAALHYTNGYTYFFKG-------SQYWRFNDKSF 153 (161)
Q Consensus 85 ~~~~~yfFkg~~y~~~d~~~~~~~~~gyP~~i~~w~g~---p~-~idaa~~~~~g~~yff~g-------~~y~r~~~~~~ 153 (161)
.++++|++.|. .-.||..+++ |.-+ |. +-.+.....+|++|++-| +...+||+.++
T Consensus 406 ~~~~IYv~GG~-~e~ydp~~~~------------W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 406 FGRRLFLVGRN-AEFYCESSNT------------WTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred ECCEEEEECCc-eEEecCCCCc------------EeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCC
Confidence 36899999663 4567766544 2211 11 222222334789999877 34567777766
Q ss_pred e
Q psy5152 154 S 154 (161)
Q Consensus 154 ~ 154 (161)
+
T Consensus 473 ~ 473 (480)
T PHA02790 473 S 473 (480)
T ss_pred e
Confidence 4
No 24
>PHA02790 Kelch-like protein; Provisional
Probab=77.59 E-value=43 Score=28.40 Aligned_cols=93 Identities=15% Similarity=0.176 Sum_probs=47.9
Q ss_pred cCCeEEEEECC----EEEEEcCCccCCCCceecCCCC---CCCCC-CccceEEEccCCeEEEEECCe-----EEEEcCCC
Q psy5152 38 KNGKTYFFKGS----KYWRYTGKSMDDGYPKDISEGF---TGIPD-NIDAALVWSGNGKIYFFKGSK-----FWKFDPSS 104 (161)
Q Consensus 38 ~~g~~y~Fkg~----~~w~~~~~~~~~g~P~~i~~~~---~glp~-~idAa~~~~~~~~~yfFkg~~-----y~~~d~~~ 104 (161)
.++++|+.-|. .+.+|+.. .+.| +.+|. .-..+... .+|++|++.|.. .-+||..+
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~----------~n~W~~~~~l~~~r~~~~~~~-~~g~IYviGG~~~~~~~ve~ydp~~ 385 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHG----------DAAWVNMPSLLKPRCNPAVAS-INNVIYVIGGHSETDTTTEYLLPNH 385 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECC----------CCeEEECCCCCCCCcccEEEE-ECCEEEEecCcCCCCccEEEEeCCC
Confidence 47899998773 34455431 1123 23332 22323322 468999998732 22344333
Q ss_pred CCCcCCCCCccCCCCCCCCC----CCCeEEEeCCCeEEEEECCeEEEEeCCCce
Q psy5152 105 KPPVKSTYPKPTSNWEGIPD----NIDAALHYTNGYTYFFKGSQYWRFNDKSFS 154 (161)
Q Consensus 105 ~~~~~~gyP~~i~~w~g~p~----~idaa~~~~~g~~yff~g~~y~r~~~~~~~ 154 (161)
++ |.-+|. .-.++....+|++|++-| ..-+||+.+++
T Consensus 386 ~~------------W~~~~~m~~~r~~~~~~~~~~~IYv~GG-~~e~ydp~~~~ 426 (480)
T PHA02790 386 DQ------------WQFGPSTYYPHYKSCALVFGRRLFLVGR-NAEFYCESSNT 426 (480)
T ss_pred CE------------EEeCCCCCCccccceEEEECCEEEEECC-ceEEecCCCCc
Confidence 22 543321 112222223789999855 45568887765
No 25
>PF13964 Kelch_6: Kelch motif
Probab=76.67 E-value=6.9 Score=21.89 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=20.6
Q ss_pred CCCeEEEEECC--------eEEEEeCCCceeecCC
Q psy5152 133 TNGYTYFFKGS--------QYWRFNDKSFSVNCRP 159 (161)
Q Consensus 133 ~~g~~yff~g~--------~y~r~~~~~~~v~~~~ 159 (161)
.++++|+|-|. .+++||..+++=+..|
T Consensus 10 ~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 10 VGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred ECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC
Confidence 37899998774 4599999998866554
No 26
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.50 E-value=48 Score=27.39 Aligned_cols=67 Identities=25% Similarity=0.466 Sum_probs=40.2
Q ss_pred cccCCCCCCCC---cEEEEEccCCeEEEEE---CCEEEEEcCCccCCCCceecCCCCCCCC-CCccceEEEccCCeEEEE
Q psy5152 20 SKSWIGLPGQI---DAAFTYSKNGKTYFFK---GSKYWRYTGKSMDDGYPKDISEGFTGIP-DNIDAALVWSGNGKIYFF 92 (161)
Q Consensus 20 ~~~w~glp~~i---DAa~~~~~~g~~y~Fk---g~~~w~~~~~~~~~g~P~~i~~~~~glp-~~idAa~~~~~~~~~yfF 92 (161)
...||.+|.++ -+|.. ...+|+=- |...+..+-.....++ +.|.+ |||.+ ++--+|+. ++++|.|
T Consensus 27 a~~lPdlPvg~KnG~Ga~i---g~~~YVGLGs~G~afy~ldL~~~~k~W-~~~a~-FpG~~rnqa~~a~~---~~kLyvF 98 (381)
T COG3055 27 AGQLPDLPVGFKNGAGALI---GDTVYVGLGSAGTAFYVLDLKKPGKGW-TKIAD-FPGGARNQAVAAVI---GGKLYVF 98 (381)
T ss_pred hccCCCCCcccccccccee---cceEEEEeccCCccceehhhhcCCCCc-eEccc-CCCcccccchheee---CCeEEEe
Confidence 35688888644 22322 33777644 4567777765555554 45654 78876 34334443 5899999
Q ss_pred EC
Q psy5152 93 KG 94 (161)
Q Consensus 93 kg 94 (161)
.|
T Consensus 99 gG 100 (381)
T COG3055 99 GG 100 (381)
T ss_pred ec
Confidence 75
No 27
>KOG4499|consensus
Probab=71.66 E-value=26 Score=27.51 Aligned_cols=78 Identities=18% Similarity=0.364 Sum_probs=45.8
Q ss_pred CccceEEEccCCe-EEEEECCeE----EEEcCCCCCCcCCCCCccCCCCCC-CC---CCCCeEEEeCCCeEEE--EECCe
Q psy5152 76 NIDAALVWSGNGK-IYFFKGSKF----WKFDPSSKPPVKSTYPKPTSNWEG-IP---DNIDAALHYTNGYTYF--FKGSQ 144 (161)
Q Consensus 76 ~idAa~~~~~~~~-~yfFkg~~y----~~~d~~~~~~~~~gyP~~i~~w~g-~p---~~idaa~~~~~g~~yf--f~g~~ 144 (161)
.|.-++.|..+.+ .|+.....| |.||-.+.. +. -|+.|-+.+. -| .-.|+.-.+.+|.+|. |.|..
T Consensus 158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~-~s--nr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~ 234 (310)
T KOG4499|consen 158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGD-LS--NRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGT 234 (310)
T ss_pred cCCccccccccCcEEEEEccCceEEeeeecCCCccc-cc--CcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcE
Confidence 4555566655444 455544333 777777654 32 2554432111 01 1245544466898987 99999
Q ss_pred EEEEeCCCceee
Q psy5152 145 YWRFNDKSFSVN 156 (161)
Q Consensus 145 y~r~~~~~~~v~ 156 (161)
..++|+.+.++.
T Consensus 235 V~~~dp~tGK~L 246 (310)
T KOG4499|consen 235 VQKVDPTTGKIL 246 (310)
T ss_pred EEEECCCCCcEE
Confidence 999999987653
No 28
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=68.30 E-value=18 Score=27.27 Aligned_cols=69 Identities=17% Similarity=0.336 Sum_probs=40.9
Q ss_pred cCCe-EEEE--ECCeEEEEcCCCCCCcCCCCCccCCCCCCCCCCCCeEEEeCCCeEEE--EECCeEEEEeCCCce
Q psy5152 85 GNGK-IYFF--KGSKFWKFDPSSKPPVKSTYPKPTSNWEGIPDNIDAALHYTNGYTYF--FKGSQYWRFNDKSFS 154 (161)
Q Consensus 85 ~~~~-~yfF--kg~~y~~~d~~~~~~~~~gyP~~i~~w~g~p~~idaa~~~~~g~~yf--f~g~~y~r~~~~~~~ 154 (161)
.+++ +|+- ...+.|+|+..... .....++.+.+..+....+|+...+.+|.+|. +.+++.++||+....
T Consensus 143 ~dg~~lyv~ds~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~ 216 (246)
T PF08450_consen 143 PDGKTLYVADSFNGRIWRFDLDADG-GELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKL 216 (246)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTT-CCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCE
T ss_pred CcchheeecccccceeEEEeccccc-cceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccE
Confidence 3454 4443 25678998875432 11112333322333333478888888999998 478999999998543
No 29
>KOG4441|consensus
Probab=61.72 E-value=1.1e+02 Score=26.76 Aligned_cols=115 Identities=20% Similarity=0.347 Sum_probs=60.1
Q ss_pred CCCCCC----CCcEEEEEccCCeEEEEECCEEEEEcCCccCCCC-ceecCCCCCCCC---C-CccceEEEccCCeEEEEE
Q psy5152 23 WIGLPG----QIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGY-PKDISEGFTGIP---D-NIDAALVWSGNGKIYFFK 93 (161)
Q Consensus 23 w~glp~----~iDAa~~~~~~g~~y~Fkg~~~w~~~~~~~~~g~-P~~i~~~~~glp---~-~idAa~~~~~~~~~yfFk 93 (161)
|..+|+ +.+++... .+|.+|.--|..-+..-. +++ .| |. .+.|.-++ . .-.++.. ..+|++|...
T Consensus 361 W~~~a~M~~~R~~~~v~~-l~g~iYavGG~dg~~~l~-svE-~YDp~--~~~W~~va~m~~~r~~~gv~-~~~g~iYi~G 434 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAV-LDGKLYAVGGFDGEKSLN-SVE-CYDPV--TNKWTPVAPMLTRRSGHGVA-VLGGKLYIIG 434 (571)
T ss_pred eeccCCccCccccceeEE-ECCEEEEEeccccccccc-cEE-EecCC--CCcccccCCCCcceeeeEEE-EECCEEEEEc
Confidence 666553 45555543 589999887754221111 111 11 21 23354332 2 2222222 2479999998
Q ss_pred C--------CeEEEEcCCCCCCcCCCCCccCCCCCCCCC----CCCeEEEeCCCeEEEEECCe-------EEEEeCCCce
Q psy5152 94 G--------SKFWKFDPSSKPPVKSTYPKPTSNWEGIPD----NIDAALHYTNGYTYFFKGSQ-------YWRFNDKSFS 154 (161)
Q Consensus 94 g--------~~y~~~d~~~~~~~~~gyP~~i~~w~g~p~----~idaa~~~~~g~~yff~g~~-------y~r~~~~~~~ 154 (161)
| +.+-.||..++. |.-+|. +--+....-++++|...|.. .-+||+.+++
T Consensus 435 G~~~~~~~l~sve~YDP~t~~------------W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNT------------WTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred CcCCCccccceEEEEcCCCCc------------eeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCc
Confidence 7 344556665543 433331 11111222379999988743 6788988876
Q ss_pred e
Q psy5152 155 V 155 (161)
Q Consensus 155 v 155 (161)
.
T Consensus 503 W 503 (571)
T KOG4441|consen 503 W 503 (571)
T ss_pred e
Confidence 4
No 30
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.43 E-value=50 Score=27.26 Aligned_cols=79 Identities=22% Similarity=0.404 Sum_probs=48.8
Q ss_pred CCCCCCC---CCccceEEEccCCeEEEEE---CCeEEEEcCCCCCCcCCCCCccCCCCCCCCCCCCeEEEeCCCeEEEEE
Q psy5152 68 EGFTGIP---DNIDAALVWSGNGKIYFFK---GSKFWKFDPSSKPPVKSTYPKPTSNWEGIPDNIDAALHYTNGYTYFFK 141 (161)
Q Consensus 68 ~~~~glp---~~idAa~~~~~~~~~yfFk---g~~y~~~d~~~~~~~~~gyP~~i~~w~g~p~~idaa~~~~~g~~yff~ 141 (161)
+.||.+| ...-+|+. +..+|+=- |..+++.|.... ..++ +.|++|+|-+.+ +|+-...++++|.|.
T Consensus 28 ~~lPdlPvg~KnG~Ga~i---g~~~YVGLGs~G~afy~ldL~~~---~k~W-~~~a~FpG~~rn-qa~~a~~~~kLyvFg 99 (381)
T COG3055 28 GQLPDLPVGFKNGAGALI---GDTVYVGLGSAGTAFYVLDLKKP---GKGW-TKIADFPGGARN-QAVAAVIGGKLYVFG 99 (381)
T ss_pred ccCCCCCcccccccccee---cceEEEEeccCCccceehhhhcC---CCCc-eEcccCCCcccc-cchheeeCCeEEEee
Confidence 4567777 34445544 23788754 567888887642 1232 345668886643 444444579999997
Q ss_pred CC------------eEEEEeCCCce
Q psy5152 142 GS------------QYWRFNDKSFS 154 (161)
Q Consensus 142 g~------------~y~r~~~~~~~ 154 (161)
|- .-||||+.+++
T Consensus 100 G~Gk~~~~~~~~~nd~Y~y~p~~ns 124 (381)
T COG3055 100 GYGKSVSSSPQVFNDAYRYDPSTNS 124 (381)
T ss_pred ccccCCCCCceEeeeeEEecCCCCh
Confidence 73 46788877654
No 31
>cd08988 GH43_ABN Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-bla
Probab=59.60 E-value=57 Score=25.39 Aligned_cols=66 Identities=23% Similarity=0.457 Sum_probs=36.1
Q ss_pred CCccceEEEccCCeEEEEECC-----eEEEEcCCCCCCcCCCCCccCCCCCCCCCCCCeEEEe-CCCeEEEE
Q psy5152 75 DNIDAALVWSGNGKIYFFKGS-----KFWKFDPSSKPPVKSTYPKPTSNWEGIPDNIDAALHY-TNGYTYFF 140 (161)
Q Consensus 75 ~~idAa~~~~~~~~~yfFkg~-----~y~~~d~~~~~~~~~gyP~~i~~w~g~p~~idaa~~~-~~g~~yff 140 (161)
..||+++....+|+.||+-|+ +..+++..+.....++..+.|..-..-...++|.... .+|+-|+|
T Consensus 118 ~~iDp~~f~DdDG~~Yl~~g~~~~gi~~~eL~~d~~~~~~~~~~~~i~~~~~~~~~~Egp~i~k~~g~YYl~ 189 (279)
T cd08988 118 NAIDPAIIFDQHGQPWLSFGSFWGGIKLFELDKDTMKPAEPGELHSIAGRERSSAAIEAPFILYRGDYYYLF 189 (279)
T ss_pred CccCCceEEcCCCCEEEEecccCCCEEEEEECcccCCccCCCcceEEeccCCCCCceEeeEEEEcCCeEEEE
Confidence 479987666567999987554 2346666654311234444443200001245666554 47776765
No 32
>KOG4693|consensus
Probab=43.95 E-value=1.2e+02 Score=24.30 Aligned_cols=61 Identities=25% Similarity=0.464 Sum_probs=34.4
Q ss_pred CCccceEEEccCCeEEEEEC---------CeEEEEcCCCCCCcCCCCCccCCC-CC-CCCCCCCeEEEeCCCeEEEEECC
Q psy5152 75 DNIDAALVWSGNGKIYFFKG---------SKFWKFDPSSKPPVKSTYPKPTSN-WE-GIPDNIDAALHYTNGYTYFFKGS 143 (161)
Q Consensus 75 ~~idAa~~~~~~~~~yfFkg---------~~y~~~d~~~~~~~~~gyP~~i~~-w~-g~p~~idaa~~~~~g~~yff~g~ 143 (161)
.+-.++|.. |+++|+|.| +.-|.||..+... +.|+. =. .++.+=..++.. ++++|+|-|.
T Consensus 241 RRSHS~fvY--ng~~Y~FGGYng~ln~HfndLy~FdP~t~~W------~~I~~~Gk~P~aRRRqC~~v~-g~kv~LFGGT 311 (392)
T KOG4693|consen 241 RRSHSTFVY--NGKMYMFGGYNGTLNVHFNDLYCFDPKTSMW------SVISVRGKYPSARRRQCSVVS-GGKVYLFGGT 311 (392)
T ss_pred ccccceEEE--cceEEEecccchhhhhhhcceeecccccchh------eeeeccCCCCCcccceeEEEE-CCEEEEecCC
Confidence 355666764 799999976 2237777765431 00111 00 133344455554 7899999775
Q ss_pred e
Q psy5152 144 Q 144 (161)
Q Consensus 144 ~ 144 (161)
.
T Consensus 312 s 312 (392)
T KOG4693|consen 312 S 312 (392)
T ss_pred C
Confidence 3
No 33
>KOG4441|consensus
Probab=40.82 E-value=2.5e+02 Score=24.61 Aligned_cols=103 Identities=20% Similarity=0.301 Sum_probs=57.8
Q ss_pred CCeEEEEECCE--------EEEEcCCccCCCCceecCCCCCCCC----CCccceEEEccCCeEEEEECCeEEEEcCCCCC
Q psy5152 39 NGKTYFFKGSK--------YWRYTGKSMDDGYPKDISEGFTGIP----DNIDAALVWSGNGKIYFFKGSKFWKFDPSSKP 106 (161)
Q Consensus 39 ~g~~y~Fkg~~--------~w~~~~~~~~~g~P~~i~~~~~glp----~~idAa~~~~~~~~~yfFkg~~y~~~d~~~~~ 106 (161)
++.+|..-|.. +|+||... ..|..+| .+.++++.. .+|.+|...|..-+.+- +.
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~----------~~W~~~a~M~~~R~~~~v~~-l~g~iYavGG~dg~~~l---~s 397 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRT----------NQWTPVAPMNTKRSDFGVAV-LDGKLYAVGGFDGEKSL---NS 397 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCC----------CceeccCCccCccccceeEE-ECCEEEEEecccccccc---cc
Confidence 67888876533 45555321 1255554 567777764 57899998775411110 11
Q ss_pred CcCCCCCccCCCCCCCCC----CCCeEEEeCCCeEEEEEC--------CeEEEEeCCCceeec
Q psy5152 107 PVKSTYPKPTSNWEGIPD----NIDAALHYTNGYTYFFKG--------SQYWRFNDKSFSVNC 157 (161)
Q Consensus 107 ~~~~gyP~~i~~w~g~p~----~idaa~~~~~g~~yff~g--------~~y~r~~~~~~~v~~ 157 (161)
++. |-.....|.-++. .-.++....+|++|..-| +..-+||+.+++-..
T Consensus 398 -vE~-YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~ 458 (571)
T KOG4441|consen 398 -VEC-YDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTL 458 (571)
T ss_pred -EEE-ecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceee
Confidence 221 2222223655442 223344445899999988 567788988876443
No 34
>COG4841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.70 E-value=1.2e+02 Score=19.88 Aligned_cols=58 Identities=21% Similarity=0.556 Sum_probs=37.1
Q ss_pred EEEEcCCCCCCcCCCCCccCCCCCCCCCCCCeEEEeCCCeEEEEECCeEEEEeCCCceeecCC
Q psy5152 97 FWKFDPSSKPPVKSTYPKPTSNWEGIPDNIDAALHYTNGYTYFFKGSQYWRFNDKSFSVNCRP 159 (161)
Q Consensus 97 y~~~d~~~~~~~~~gyP~~i~~w~g~p~~idaa~~~~~g~~yff~g~~y~r~~~~~~~v~~~~ 159 (161)
|.||-.+.. +.+|+.--++. ..|..+-.+-. .+|-++|.-.+.+|-|+.-..+|+-.|
T Consensus 28 fvRyGG~~~--~~~GFS~gv~~--e~PkE~g~~q~-~Dgltffiee~DlWYF~d~d~~v~y~~ 85 (95)
T COG4841 28 FVRYGGCSS--LQQGFSLGVAK--EVPKEIGYKQE-YDGLTFFIEEKDLWYFDDHDLKVDYSP 85 (95)
T ss_pred EEEEcCccc--ccCCcceeeec--cCchhhchhee-ecCeEEEEecCceEEEcCCcEEEeccC
Confidence 467777642 55676543332 34544433333 378888889999999988777776554
No 35
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=36.23 E-value=75 Score=17.24 Aligned_cols=27 Identities=22% Similarity=0.484 Sum_probs=15.7
Q ss_pred EEEeCCCeEEEEECC--------eEEEEeCCCcee
Q psy5152 129 ALHYTNGYTYFFKGS--------QYWRFNDKSFSV 155 (161)
Q Consensus 129 a~~~~~g~~yff~g~--------~y~r~~~~~~~v 155 (161)
|....++.+|+|-|- ..|+||..+++-
T Consensus 7 ~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W 41 (49)
T PF13418_consen 7 AVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTW 41 (49)
T ss_dssp EEEE-TTEEEEE--EEE-TEE---EEEEETTTTEE
T ss_pred EEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEE
Confidence 334446788887552 568888887764
No 36
>PF14564 Membrane_bind: Membrane binding; PDB: 1YHP_A 2B1O_A.
Probab=34.98 E-value=52 Score=22.31 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=23.2
Q ss_pred CCCeEEEe--CCCeEEEEECCeEEEEeCCCceee
Q psy5152 125 NIDAALHY--TNGYTYFFKGSQYWRFNDKSFSVN 156 (161)
Q Consensus 125 ~idaa~~~--~~g~~yff~g~~y~r~~~~~~~v~ 156 (161)
.+.++++. .+...|...|.-|.+||+.+..|+
T Consensus 50 ~iv~~I~Vr~~~~g~~v~nGsvYFkY~~s~g~V~ 83 (110)
T PF14564_consen 50 EIVCQISVRDTDWGQYVANGSVYFKYNPSTGEVS 83 (110)
T ss_dssp EEEEEEEEEESST-SEEEEEEEEEEEETTTTEEE
T ss_pred cEEEEEEEEeccCCceEecceEEEEECCCCCeEE
Confidence 35555554 332479999999999999888875
No 37
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=34.05 E-value=1.2e+02 Score=18.89 Aligned_cols=52 Identities=15% Similarity=0.225 Sum_probs=33.4
Q ss_pred CCeEEEEECCeEEEEcCCCCCCcCCCCCccCCCCCCCCCCCCeEEEeCCCeEEEEECCeEEEEeCCC
Q psy5152 86 NGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSNWEGIPDNIDAALHYTNGYTYFFKGSQYWRFNDKS 152 (161)
Q Consensus 86 ~~~~yfFkg~~y~~~d~~~~~~~~~gyP~~i~~w~g~p~~idaa~~~~~g~~yff~g~~y~r~~~~~ 152 (161)
...+|+||+.+.-.=|.. -|.+ --..++.+.-.+|....-+|++..|.|..-
T Consensus 15 GstvyiFKDGKMamEdk~---------Gra~------rm~~g~~meTkDG~kI~m~gdEV~RL~~~l 66 (73)
T PF11525_consen 15 GSTVYIFKDGKMAMEDKF---------GRAV------RMKKGTVMETKDGQKITMHGDEVARLDSLL 66 (73)
T ss_dssp SEEEEEETTS-EEEEETT---------SEEE------E--TT-EEEBTTS-EEEEETTEEEEECCCH
T ss_pred CCEEEEEcCCceehhhhc---------CceE------EcCCCcEEEccCCCEEEecchHHHhHHHHH
Confidence 346899998886654422 1111 124677888889999999999999998763
No 38
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=33.10 E-value=2.1e+02 Score=23.95 Aligned_cols=64 Identities=14% Similarity=0.325 Sum_probs=32.3
Q ss_pred cCCeEEEEEC-----CeEEEEcCCCCCCcCCCCCccCCCCCCCCCCCCeEEEeCCCeEEEEE-CCeEEEEeCCCcee
Q psy5152 85 GNGKIYFFKG-----SKFWKFDPSSKPPVKSTYPKPTSNWEGIPDNIDAALHYTNGYTYFFK-GSQYWRFNDKSFSV 155 (161)
Q Consensus 85 ~~~~~yfFkg-----~~y~~~d~~~~~~~~~gyP~~i~~w~g~p~~idaa~~~~~g~~yff~-g~~y~r~~~~~~~v 155 (161)
.+|+-.+|.+ .+++..|..+.. + +++++-+| .....+.++-.+..+|+++ +...+++|..+++.
T Consensus 45 ~dG~kllF~s~~dg~~nly~lDL~t~~-i-----~QLTdg~g-~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 45 DDGRKLLFASDFDGNRNLYLLDLATGE-I-----TQLTDGPG-DNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE 114 (386)
T ss_dssp TTS-EEEEEE-TTSS-EEEEEETTT-E-E-----EE---SS--B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E
T ss_pred CCCCEEEEEeccCCCcceEEEEcccCE-E-----EECccCCC-CCccceEEecCCCeEEEEECCCeEEEEECCcCcE
Confidence 4566666653 478899988754 2 12222111 1122344444456667776 46899999998775
No 39
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=32.72 E-value=2.7e+02 Score=22.57 Aligned_cols=70 Identities=13% Similarity=0.257 Sum_probs=35.7
Q ss_pred cCCeEEEEECCeEEEEcCC-CCCCcCCCCCccCCC-CCCC---CCC-CCeEEEeCCCeEEEEEC----------------
Q psy5152 85 GNGKIYFFKGSKFWKFDPS-SKPPVKSTYPKPTSN-WEGI---PDN-IDAALHYTNGYTYFFKG---------------- 142 (161)
Q Consensus 85 ~~~~~yfFkg~~y~~~d~~-~~~~~~~gyP~~i~~-w~g~---p~~-idaa~~~~~g~~yff~g---------------- 142 (161)
.++ +|+-...+.|++... ..... .+-++.+.+ |..- +.+ +.+.....+|.+|+-.|
T Consensus 81 ~~G-lyV~~~~~i~~~~d~~gdg~a-d~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~ 158 (367)
T TIGR02604 81 VGG-VYVATPPDILFLRDKDGDDKA-DGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDES 158 (367)
T ss_pred cCC-EEEeCCCeEEEEeCCCCCCCC-CCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCc
Confidence 345 888777888888432 21101 112333333 4321 111 22222235788888555
Q ss_pred -----CeEEEEeCCCceee
Q psy5152 143 -----SQYWRFNDKSFSVN 156 (161)
Q Consensus 143 -----~~y~r~~~~~~~v~ 156 (161)
...+|+++.+.+++
T Consensus 159 ~~~~~g~i~r~~pdg~~~e 177 (367)
T TIGR02604 159 RQGLGGGLFRYNPDGGKLR 177 (367)
T ss_pred ccccCceEEEEecCCCeEE
Confidence 24788887765443
No 40
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=29.06 E-value=93 Score=17.04 Aligned_cols=12 Identities=17% Similarity=0.515 Sum_probs=8.2
Q ss_pred CeEEEEeCCCce
Q psy5152 143 SQYWRFNDKSFS 154 (161)
Q Consensus 143 ~~y~r~~~~~~~ 154 (161)
+..|+||..+.+
T Consensus 19 nd~~~~~~~~~~ 30 (49)
T PF13415_consen 19 NDVWVFDLDTNT 30 (49)
T ss_pred cCEEEEECCCCE
Confidence 357788877665
No 41
>cd08988 GH43_ABN Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-bla
Probab=29.05 E-value=2.7e+02 Score=21.51 Aligned_cols=65 Identities=22% Similarity=0.372 Sum_probs=33.6
Q ss_pred CCCcEEEEEccCCeEEEEECC-----EEEEEcCCccC---CCCceecCCCCCCCCCCccceEEEccCCeEEEEE
Q psy5152 28 GQIDAAFTYSKNGKTYFFKGS-----KYWRYTGKSMD---DGYPKDISEGFTGIPDNIDAALVWSGNGKIYFFK 93 (161)
Q Consensus 28 ~~iDAa~~~~~~g~~y~Fkg~-----~~w~~~~~~~~---~g~P~~i~~~~~glp~~idAa~~~~~~~~~yfFk 93 (161)
..||+.+....+|+.|++-++ +..+++.+.+. .+..+.|...- .-...+.|......+|.-|||-
T Consensus 118 ~~iDp~~f~DdDG~~Yl~~g~~~~gi~~~eL~~d~~~~~~~~~~~~i~~~~-~~~~~~Egp~i~k~~g~YYl~~ 190 (279)
T cd08988 118 NAIDPAIIFDQHGQPWLSFGSFWGGIKLFELDKDTMKPAEPGELHSIAGRE-RSSAAIEAPFILYRGDYYYLFV 190 (279)
T ss_pred CccCCceEEcCCCCEEEEecccCCCEEEEEECcccCCccCCCcceEEeccC-CCCCceEeeEEEEcCCeEEEEE
Confidence 368975433367999987554 22345443222 23333333210 0013466666666667777763
No 42
>PHA00147 upper collar protein
Probab=27.38 E-value=18 Score=28.75 Aligned_cols=29 Identities=38% Similarity=0.894 Sum_probs=23.0
Q ss_pred CCCCCCCCCCeEEEe----CCCeEEEEECCeEE
Q psy5152 118 NWEGIPDNIDAALHY----TNGYTYFFKGSQYW 146 (161)
Q Consensus 118 ~w~g~p~~idaa~~~----~~g~~yff~g~~y~ 146 (161)
+|.|+|..||.+|-- .+|++-|++++.+-
T Consensus 40 ~weglP~~idp~flEk~i~q~G~v~fy~d~~~g 72 (308)
T PHA00147 40 EWEGLPNTIDPSFLEKSIHQNGYVAFYKDPMFG 72 (308)
T ss_pred hhcCCCCCCCHHHHHHHHHHcCceEEEcCcchh
Confidence 499999999998764 37888888777653
No 43
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=27.35 E-value=62 Score=15.22 Aligned_cols=17 Identities=18% Similarity=0.208 Sum_probs=11.3
Q ss_pred CCCeEEEeCCCeEEEEE
Q psy5152 125 NIDAALHYTNGYTYFFK 141 (161)
Q Consensus 125 ~idaa~~~~~g~~yff~ 141 (161)
.|.+.+.+.+|.+.+=+
T Consensus 6 ~I~~i~~D~~G~lWigT 22 (24)
T PF07494_consen 6 NIYSIYEDSDGNLWIGT 22 (24)
T ss_dssp CEEEEEE-TTSCEEEEE
T ss_pred eEEEEEEcCCcCEEEEe
Confidence 47777788888877643
No 44
>KOG1230|consensus
Probab=26.96 E-value=3e+02 Score=23.58 Aligned_cols=33 Identities=21% Similarity=0.447 Sum_probs=22.4
Q ss_pred CCCCCeEEEeCCCeEEEEECC-------------eEEEEeCCCcee
Q psy5152 123 PDNIDAALHYTNGYTYFFKGS-------------QYWRFNDKSFSV 155 (161)
Q Consensus 123 p~~idaa~~~~~g~~yff~g~-------------~y~r~~~~~~~v 155 (161)
|..--+|+.++.|.+++|-|. ..|.||..+++-
T Consensus 121 pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkw 166 (521)
T KOG1230|consen 121 PRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKW 166 (521)
T ss_pred CCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchh
Confidence 344556677777788888664 467888777653
No 45
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=24.76 E-value=3.3e+02 Score=21.08 Aligned_cols=71 Identities=13% Similarity=0.315 Sum_probs=36.5
Q ss_pred CCccceEEEccCCeEEEEEC--CeEEEEcCCCCCCcCCCCCccCCC-CCCCCC---CCCeEEEeCCCeEEEEEC-CeEEE
Q psy5152 75 DNIDAALVWSGNGKIYFFKG--SKFWKFDPSSKPPVKSTYPKPTSN-WEGIPD---NIDAALHYTNGYTYFFKG-SQYWR 147 (161)
Q Consensus 75 ~~idAa~~~~~~~~~yfFkg--~~y~~~d~~~~~~~~~gyP~~i~~-w~g~p~---~idaa~~~~~g~~yff~g-~~y~r 147 (161)
..+.|+-..+..+.+|+.++ .+..++|..-+. + . -.++.. +.|++. ...+.-.+.+|.+|+.+- +.||+
T Consensus 171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~-~-~--~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~ 246 (248)
T PF06977_consen 171 RDLSGLSYDPRTGHLLILSDESRLLLELDRQGRV-V-S--SLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYR 246 (248)
T ss_dssp S---EEEEETTTTEEEEEETTTTEEEEE-TT--E-E-E--EEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEE
T ss_pred ccccceEEcCCCCeEEEEECCCCeEEEECCCCCE-E-E--EEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEE
Confidence 45666666667788998874 467788854221 1 1 112233 444443 344544457999999876 78888
Q ss_pred Ee
Q psy5152 148 FN 149 (161)
Q Consensus 148 ~~ 149 (161)
|.
T Consensus 247 f~ 248 (248)
T PF06977_consen 247 FE 248 (248)
T ss_dssp EE
T ss_pred eC
Confidence 74
No 46
>cd08989 GH43_XYL Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended
Probab=23.48 E-value=3e+02 Score=21.21 Aligned_cols=20 Identities=20% Similarity=0.423 Sum_probs=14.1
Q ss_pred CCcEEEEEccCCeEEEEECC
Q psy5152 29 QIDAAFTYSKNGKTYFFKGS 48 (161)
Q Consensus 29 ~iDAa~~~~~~g~~y~Fkg~ 48 (161)
.||+.+....+|+.|++-+.
T Consensus 117 ~IDp~~f~D~dG~~Yl~~~~ 136 (269)
T cd08989 117 GFDPSLFHDDDGKKYLINMG 136 (269)
T ss_pred cccCceEEcCCCCEEEEecC
Confidence 58976543368999988654
No 47
>cd09001 GH43_XYL_2 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend
Probab=20.10 E-value=4.1e+02 Score=20.40 Aligned_cols=65 Identities=17% Similarity=0.308 Sum_probs=33.3
Q ss_pred CCCcEEEEEccCCeEEEEECCE---EEEEcCCccC-CCCceecCCCCCCC-CCCccceEEEccCCeEEEEE
Q psy5152 28 GQIDAAFTYSKNGKTYFFKGSK---YWRYTGKSMD-DGYPKDISEGFTGI-PDNIDAALVWSGNGKIYFFK 93 (161)
Q Consensus 28 ~~iDAa~~~~~~g~~y~Fkg~~---~w~~~~~~~~-~g~P~~i~~~~~gl-p~~idAa~~~~~~~~~yfFk 93 (161)
..||+.+....+|+.|++-++. +.+++.+... .+.++.+... +.. ...++|.+....+|.-|||-
T Consensus 119 ~~iDp~~f~D~dG~~Yl~~~~~~i~~~~l~~d~~~~~~~~~~~~~~-~~~~~~~~Egp~i~k~~G~YYl~~ 188 (269)
T cd09001 119 GYHDPSLLFDDDGTAYLVYGGGTIRLVELSPDLTGVGGKDQVIIDA-GEEIGLGAEGSHLYKINGYYYIFN 188 (269)
T ss_pred CcccCceEEcCCCCEEEEeCCCcEEEEEECcccCCcCCCceEEEeC-CCccccccccCeEEEECCEEEEEE
Confidence 4689866443688999775542 2344443221 1223333221 111 23566666666677777663
Done!