RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5152
(161 letters)
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease,
hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP:
b.66.1.1 PDB: 1rtg_A
Length = 218
Score = 160 bits (406), Expect = 1e-50
Identities = 52/157 (33%), Positives = 82/157 (52%), Gaps = 4/157 (2%)
Query: 2 HYWKLTDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDG 61
W+ P L++ W LP +IDA + + K FF G++YW Y+ +++ G
Sbjct: 50 FIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWIYSASTLERG 109
Query: 62 YPKDISE-GFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSN-W 119
YPK ++ G +DAA WS N K Y F G KFW+++ K + +PK ++ W
Sbjct: 110 YPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRYNEVKK-KMDPGFPKLIADAW 168
Query: 120 EGIPDNIDAALHY-TNGYTYFFKGSQYWRFNDKSFSV 155
IPDN+DA + G++YFFKG+ Y + ++S
Sbjct: 169 NAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKS 205
Score = 118 bits (296), Expect = 4e-34
Identities = 46/121 (38%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 2 HYWKLTDDGIAEGYPKLISKSWIG-LPGQIDAAFTYSKNGKTYFFKGSKYWRY--TGKSM 58
YW + + GYPK ++ + ++DAAF +SKN KTY F G K+WRY K M
Sbjct: 97 EYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKM 156
Query: 59 DDGYPKDISEGFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSN 118
D G+PK I++ + IPDN+DA + G G YFFKG+ + K + S KS +
Sbjct: 157 DPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSL---KSVKFGSIKS 213
Query: 119 W 119
Sbjct: 214 D 214
Score = 103 bits (259), Expect = 2e-28
Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 7/132 (5%)
Query: 27 PGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIPDNIDAALVWSGN 86
+ G+ +FFK WR P ++ + +P+ IDA
Sbjct: 29 QDIVFDGIAQI-RGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQE 87
Query: 87 GKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSNWE--GIPDNIDAALHYT-NGYTYFFKGS 143
K FF G+++W + S+ ++ YPKP ++ +DAA +++ N TY F G
Sbjct: 88 EKAVFFAGNEYWIYSAST---LERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGD 144
Query: 144 QYWRFNDKSFSV 155
++WR+N+ +
Sbjct: 145 KFWRYNEVKKKM 156
Score = 68.9 bits (168), Expect = 4e-15
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 2 HYWKLTDDG--IAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMD 59
+W+ + + G+PKLI+ +W +P +DA G +YFFKG+ Y + +S+
Sbjct: 145 KFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLK 204
Query: 60 DGYPKDISEGFTG 72
I + G
Sbjct: 205 SVKFGSIKSDWLG 217
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length,
metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2
b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB:
1gxd_A
Length = 631
Score = 170 bits (430), Expect = 1e-50
Identities = 52/157 (33%), Positives = 82/157 (52%), Gaps = 4/157 (2%)
Query: 2 HYWKLTDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDG 61
W+ P L++ W LP +IDA + + K FF G++YW Y+ +++ G
Sbjct: 463 FIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWIYSASTLERG 522
Query: 62 YPKDISE-GFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSN-W 119
YPK ++ G +DAA WS N K Y F G KFW+++ K + +PK ++ W
Sbjct: 523 YPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRYNEVKK-KMDPGFPKLIADAW 581
Query: 120 EGIPDNIDAALHY-TNGYTYFFKGSQYWRFNDKSFSV 155
IPDN+DA + G++YFFKG+ Y + ++S
Sbjct: 582 NAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKS 618
Score = 121 bits (305), Expect = 4e-33
Identities = 49/123 (39%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 2 HYWKLTDDGIAEGYPKLISKSWIGLPG---QIDAAFTYSKNGKTYFFKGSKYWRY--TGK 56
YW + + GYPK ++ +GLP ++DAAF +SKN KTY F G K+WRY K
Sbjct: 510 EYWIYSASTLERGYPKPLTS--LGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRYNEVKK 567
Query: 57 SMDDGYPKDISEGFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPT 116
MD G+PK I++ + IPDN+DA + G G YFFKG+ + K + S KS
Sbjct: 568 KMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSL---KSVKFGSI 624
Query: 117 SNW 119
+
Sbjct: 625 KSD 627
Score = 100 bits (250), Expect = 1e-25
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 6/120 (5%)
Query: 39 NGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIPDNIDAALVWSGNGKIYFFKGSKFW 98
G+ +FFK WR P ++ + +P+ IDA K FF G+++W
Sbjct: 453 RGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYW 512
Query: 99 KFDPSSKPPVKSTYPKPTSNW--EGIPDNIDAALHYT-NGYTYFFKGSQYWRFNDKSFSV 155
+ S+ ++ YPKP ++ +DAA +++ N TY F G ++WR+N+ +
Sbjct: 513 IYSAST---LERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKM 569
Score = 72.3 bits (176), Expect = 1e-15
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 3 YWKLTDDG--IAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDD 60
+W+ + + G+PKLI+ +W +P +DA G +YFFKG+ Y + +S+
Sbjct: 559 FWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKS 618
Query: 61 GYPKDISEGFTG 72
I + G
Sbjct: 619 VKFGSIKSDWLG 630
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction,
Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR
of basic residues, hydrolase; 1.70A {Homo sapiens}
Length = 196
Score = 159 bits (402), Expect = 2e-50
Identities = 64/156 (41%), Positives = 99/156 (63%), Gaps = 4/156 (2%)
Query: 2 HYWKLTDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDG 61
+W++ ++ + +GYP I + W GLP I+ A+ +GK FFKG K+W + S++ G
Sbjct: 25 WFWRVRNNQVMDGYPMPIGQFWRGLPASINTAYERK-DGKFVFFKGDKHWVFDEASLEPG 83
Query: 62 YPKDISEGFTGIP-DNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSNWE 120
YPK I E G+P D IDAAL W NGK YFF+G+K+++F+ + V S YPK WE
Sbjct: 84 YPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRGNKYYRFNEELR-AVDSEYPKNIKVWE 142
Query: 121 GIPDNIDAALHYTN-GYTYFFKGSQYWRFNDKSFSV 155
GIP++ + ++ +TYF+KG++YW+FN++ V
Sbjct: 143 GIPESPRGSFMGSDEVFTYFYKGNKYWKFNNQKLKV 178
Score = 109 bits (274), Expect = 4e-31
Identities = 48/126 (38%), Positives = 72/126 (57%), Gaps = 6/126 (4%)
Query: 2 HYWKLTDDGIAEGYPKLISKSWIGLP-GQIDAAFTYSKNGKTYFFKGSKYWRY--TGKSM 58
+W + + GYPK I + GLP +IDAA + NGKTYFF+G+KY+R+ +++
Sbjct: 71 KHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRGNKYYRFNEELRAV 130
Query: 59 DDGYPKDISEGFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSN 118
D YPK+I + GIP++ + + S YF+KG+K+WKF+ V+ YPK
Sbjct: 131 DSEYPKNIKV-WEGIPESPRGSFMGSDEVFTYFYKGNKYWKFNNQKL-KVEPGYPKSALR 188
Query: 119 -WEGIP 123
W G P
Sbjct: 189 DWMGCP 194
Score = 98.2 bits (244), Expect = 1e-26
Identities = 50/135 (37%), Positives = 73/135 (54%), Gaps = 9/135 (6%)
Query: 27 PGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIPDNIDAALVWSGN 86
G D G+ + FK +WR + DGYP I + + G+P +I+ A +
Sbjct: 5 DGNFDTVAML--RGEMFVFKERWFWRVRNNQVMDGYPMPIGQFWRGLPASINTA-YERKD 61
Query: 87 GKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSN-WEGIP-DNIDAALHYT-NGYTYFFKGS 143
GK FFKG K W FD +S ++ YPK G+P D IDAAL + NG TYFF+G+
Sbjct: 62 GKFVFFKGDKHWVFDEAS---LEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRGN 118
Query: 144 QYWRFNDKSFSVNCR 158
+Y+RFN++ +V+
Sbjct: 119 KYYRFNEELRAVDSE 133
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite,
structural proteomics in europe, spine, structural
genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens}
SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Length = 450
Score = 161 bits (409), Expect = 1e-48
Identities = 52/157 (33%), Positives = 85/157 (54%), Gaps = 5/157 (3%)
Query: 2 HYWKLTDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDG 61
++ T+ E IS W LP ++AA+ ++ + FFKG+KYW G+++ G
Sbjct: 281 RFYMRTNPFYPEVELNFISVFWPQLPNGLEAAYEFADRDEVRFFKGNKYWAVQGQNVLHG 340
Query: 62 YPKDISE--GFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSN- 118
YPKDI GF +IDAAL GK YFF +K+W++D + + YPK ++
Sbjct: 341 YPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVANKYWRYDEYKR-SMDPGYPKMIAHD 399
Query: 119 WEGIPDNIDAALHYTNGYTYFFKGSQYWRFNDKSFSV 155
+ GI +DA +G+ YFF G++ ++F+ K+ +
Sbjct: 400 FPGIGHKVDAVFMK-DGFFYFFHGTRQYKFDPKTKRI 435
Score = 91.5 bits (226), Expect = 2e-22
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 33 AFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIPDNIDAALVWSGNGKIYFF 92
+ G+ FFK Y R + IS + +P+ ++AA ++ ++ FF
Sbjct: 266 DAITTIRGEVMFFKDRFYMRTNPF-YPEVELNFISVFWPQLPNGLEAAYEFADRDEVRFF 324
Query: 93 KGSKFWKFDPSSKPPVKSTYPKPTSNWEGIP---DNIDAALHYT-NGYTYFFKGSQYWRF 148
KG+K+W + V YPK + G P +IDAAL G TYFF ++YWR+
Sbjct: 325 KGNKYWAVQGQN---VLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVANKYWRY 381
Query: 149 NDKSFSV 155
++ S+
Sbjct: 382 DEYKRSM 388
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix-
metalloproteinase, metalloprotease; 2.70A {Homo sapiens}
SCOP: b.66.1.1
Length = 207
Score = 152 bits (384), Expect = 2e-47
Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 5/157 (3%)
Query: 2 HYWKLTDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDG 61
+W+L + + L W LP +IDAA+ + + + F+G K+W G + +G
Sbjct: 43 FFWRLHPQQV-DAELFLTKSFWPELPNRIDAAYEHPSHDLIFIFRGRKFWALNGYDILEG 101
Query: 62 YPKDISE-GFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSN-W 119
YPK ISE G I AA+ + GK F G++ W++D ++ + YP+ +
Sbjct: 102 YPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGNQVWRYDDTNH-IMDKDYPRLIEEDF 160
Query: 120 EGIPDNIDAALHYTNGYTYFFKGSQYWRFNDKSFSVN 156
GI D +DA NGY YFF G + ++ S +
Sbjct: 161 PGIGDKVDAVYEK-NGYIYFFNGPIQFEYSIWSNRIV 196
Score = 95.5 bits (237), Expect = 2e-25
Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)
Query: 30 IDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIPDNIDAALVWSGNGKI 89
+DA + G+T FK +WR + + D + +P+ IDAA + I
Sbjct: 26 LDAITSL--RGETMIFKDRFFWRLHPQQV-DAELFLTKSFWPELPNRIDAAYEHPSHDLI 82
Query: 90 YFFKGSKFWKFDPSSKPPVKSTYPKPTSNWE--GIPDNIDAALHYT-NGYTYFFKGSQYW 146
+ F+G KFW + YPK S I AA+H+ G T F G+Q W
Sbjct: 83 FIFRGRKFWALNGYDILE---GYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGNQVW 139
Query: 147 RFNDKSFSV 155
R++D + +
Sbjct: 140 RYDDTNHIM 148
Score = 28.8 bits (64), Expect = 0.71
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 123 PDNIDAALHYTNGYTYFFKGSQYWRFNDKSFSV 155
P A+ G T FK +WR + +
Sbjct: 22 PSLSLDAITSLRGETMIFKDRFFWRLHPQQVDA 54
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer,
hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Length = 195
Score = 143 bits (361), Expect = 3e-44
Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 8/157 (5%)
Query: 2 HYWKLTDD-GIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDD 60
YW+ ++ G P LI+ W LP ++D+ F + K +FF G + W YTG S+
Sbjct: 26 KYWRFSEGRGSRPQGPFLIADKWPALPRKLDSVFEEPLSKKLFFFSGRQVWVYTGASVL- 84
Query: 61 GYPKDISE-GFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSN- 118
P+ + + G + A + SG GK+ F G + W+FD ++ V
Sbjct: 85 -GPRRLDKLGLGADVAQVTGA-LRSGRGKMLLFSGRRLWRFDVKAQ-MVDPRSASEVDRM 141
Query: 119 WEGIPDNIDAALHYTNGYTYFFKGSQYWRFNDKSFSV 155
+ G+P + + YF + YWR + +S
Sbjct: 142 FPGVPLDTHDVFQF-REKAYFCQDRFYWRVSSRSELN 177
Score = 98.9 bits (246), Expect = 9e-27
Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 10/132 (7%)
Query: 27 PGQIDAAFTYSKNGKTYFFKGSKYWRYT-GKSMDDGYPKDISEGFTGIPDNIDAALVWSG 85
DA + Y FK KYWR++ G+ P I++ + +P +D+
Sbjct: 6 VNIFDAIAEI--GNQLYLFKDGKYWRFSEGRGSRPQGPFLIADKWPALPRKLDSVFEEPL 63
Query: 86 NGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSNWE--GIPDNIDAALHYTNGYTYFFKGS 143
+ K++FF G + W + + P+ + AL G F G
Sbjct: 64 SKKLFFFSGRQVWVYTGA-----SVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSGR 118
Query: 144 QYWRFNDKSFSV 155
+ WRF+ K+ V
Sbjct: 119 RLWRFDVKAQMV 130
Score = 66.9 bits (163), Expect = 1e-14
Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 4/77 (5%)
Query: 2 HYWKLTDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSM--D 59
+ + + + + + G+P F + K YF + YWR + +S
Sbjct: 121 WRFDVKAQMVDPRSASEVDRMFPGVPLDTHDVFQF--REKAYFCQDRFYWRVSSRSELNQ 178
Query: 60 DGYPKDISEGFTGIPDN 76
++ P++
Sbjct: 179 VDQVGYVTYDILQCPED 195
Score = 29.2 bits (65), Expect = 0.41
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 123 PDNIDAALHYTNGYTYFFKGSQYWRFNDKSFSVNCRP 159
+ DA Y FK +YWRF++ S P
Sbjct: 6 VNIFDAIAEI-GNQLYLFKDGKYWRFSEGRGSRPQGP 41
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain,
catalytic domain, domain interaction., calcium,
extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Length = 365
Score = 147 bits (370), Expect = 1e-43
Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 3/156 (1%)
Query: 2 HYWKLTDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDG 61
++ L + LIS W LP I+AA+ + + FK KYW + +
Sbjct: 199 RFFWLKVSERPKTSVNLISSLWPTLPSGIEAAYEIEARNQVFLFKDDKYWLISNLRPEPN 258
Query: 62 YPKDISE-GFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSN-W 119
YPK I GF IDAA+ + YFF +++W++D + + YPK + +
Sbjct: 259 YPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVDNQYWRYDERRQ-MMDPGYPKLITKNF 317
Query: 120 EGIPDNIDAALHYTNGYTYFFKGSQYWRFNDKSFSV 155
+GI IDA + N Y YFF+GS + ++ +
Sbjct: 318 QGIGPKIDAVFYSKNKYYYFFQGSNQFEYDFLLQRI 353
Score = 79.6 bits (195), Expect = 2e-18
Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 7/132 (5%)
Query: 27 PGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIPDNIDAALVWSGN 86
+ + K +FFK +W + IS + +P I+AA
Sbjct: 178 DPNLSFDAVTTVGNKIFFFKDRFFWLKVSER-PKTSVNLISSLWPTLPSGIEAAYEIEAR 236
Query: 87 GKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSN--WEGIPDNIDAALHYT-NGYTYFFKGS 143
+++ FK K+W + YPK + + IDAA+ TYFF +
Sbjct: 237 NQVFLFKDDKYWLISNLR---PEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVDN 293
Query: 144 QYWRFNDKSFSV 155
QYWR++++ +
Sbjct: 294 QYWRYDERRQMM 305
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus
cuniculus} SCOP: b.66.1.1
Length = 219
Score = 142 bits (359), Expect = 2e-43
Identities = 35/172 (20%), Positives = 63/172 (36%), Gaps = 27/172 (15%)
Query: 2 HYWKLTDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYT---GKSM 58
HYW+L D + I+ W P +DAAF++ K Y + +K + + G ++
Sbjct: 38 HYWRL-DTNRDGWHSWPIAHQWPQGPSTVDAAFSW--EDKLYLIQDTKVYVFLTKGGYTL 94
Query: 59 DDGYPKDISEGFTGIP----DNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPK 114
+GYPK + + P + +DAA V G+ +++ G + W D S
Sbjct: 95 VNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAGRRLWWLDLKSGA------QA 148
Query: 115 PTSNWEGIPDNIDAAL-----------HYTNGYTYFFKGSQYWRFNDKSFSV 155
+ + +D AL + Y G + +
Sbjct: 149 TWTELPWPHEKVDGALCMEKPLGPNSCSTSGPNLYLIHGPNLYCYRHVDKLN 200
Score = 110 bits (276), Expect = 4e-31
Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 9/126 (7%)
Query: 33 AFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIPDNIDAALVWSGNGKIYFF 92
A +G TY F GS YWR + D + I+ + P +DAA W K+Y
Sbjct: 22 AMVSDNHGATYVFSGSHYWRLD-TNRDGWHSWPIAHQWPQGPSTVDAAFSW--EDKLYLI 78
Query: 93 KGSKFWKFDPSSKPPVKSTYPKPTSNWEGIP-----DNIDAALHY-TNGYTYFFKGSQYW 146
+ +K + F + + YPK G P + +DAA + + G + W
Sbjct: 79 QDTKVYVFLTKGGYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAGRRLW 138
Query: 147 RFNDKS 152
+ KS
Sbjct: 139 WLDLKS 144
Score = 96.3 bits (239), Expect = 1e-25
Identities = 23/133 (17%), Positives = 39/133 (29%), Gaps = 21/133 (15%)
Query: 2 HYWKLTDDG---IAEGYPKLISKSWIGLPG----QIDAAFTYSKNGKTYFFKGSKYWRYT 54
+ G + GYPK + K P +DAAF + + + G + W
Sbjct: 82 KVYVFLTKGGYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAGRRLWWLD 141
Query: 55 GKSMDDGYPKDISEGFTGIPDNIDAALVW----------SGNGKIYFFKGSKFWKFDPSS 104
KS + + +D AL + +Y G + +
Sbjct: 142 LKS----GAQATWTELPWPHEKVDGALCMEKPLGPNSCSTSGPNLYLIHGPNLYCYRHVD 197
Query: 105 KPPVKSTYPKPTS 117
K P+P
Sbjct: 198 KLNAAKNLPQPQR 210
Score = 64.7 bits (157), Expect = 1e-13
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 74 PDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSN-WEGIPDNIDAALHY 132
PD + +A+V +G Y F GS +W+ D + + P ++ W P +DAA +
Sbjct: 16 PDLVLSAMVSDNHGATYVFSGSHYWRLDTNRDGW----HSWPIAHQWPQGPSTVDAAFSW 71
Query: 133 TNGYTYFFKGSQYWRFNDKS 152
+ Y + ++ + F K
Sbjct: 72 ED-KLYLIQDTKVYVFLTKG 90
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna
unguiculata}
Length = 225
Score = 137 bits (345), Expect = 2e-41
Identities = 42/177 (23%), Positives = 60/177 (33%), Gaps = 22/177 (12%)
Query: 1 LHYWKLTDDGIAEGYPKLISKSWIGLPGQ------IDAAFTYSKNGKTYFFKGSKYWRY- 53
LHY +LIS + L G ID +F ++ + Y F G+
Sbjct: 27 LHYTPGASSDTILTNLRLISSGFPSLAGTPFAEPGIDCSFH-TEASEAYVFSGNHSAYID 85
Query: 54 ----TGKSMDDGYPKDISEGF-----TGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSS 104
T P I+E F T D+ID+A + ++Y FKG+K+ + S
Sbjct: 86 YAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKGNKYVRIAYDS 145
Query: 105 K----PPVKSTYPKPTSNWEGIPDNIDAALH-YTNGYTYFFKGSQYWRFNDKSFSVN 156
K P N IDA + Y FKG Y R +
Sbjct: 146 KQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKGQNYVRIDFTPGGKA 202
Score = 115 bits (289), Expect = 7e-33
Identities = 32/138 (23%), Positives = 51/138 (36%), Gaps = 14/138 (10%)
Query: 1 LHYWKLTDDGIAEGYPKLISKSWIGLPGQ-----IDAAFTYSKNGKTYFFKGSKYWRY-T 54
+ Y T + P I++ + L ID+AF +K + Y FKG+KY R
Sbjct: 84 IDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKGNKYVRIAY 143
Query: 55 GKSMDDGYPKDISEGF-----TGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVK 109
G ++I +GF T IDA + Y FKG + + D +
Sbjct: 144 DSKQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKGQNYVRIDFTPGGKAD 203
Query: 110 ST--YPKPTS-NWEGIPD 124
+ +P W +
Sbjct: 204 TLVGNIRPILDGWPVLKG 221
Score = 110 bits (277), Expect = 4e-31
Identities = 34/147 (23%), Positives = 49/147 (33%), Gaps = 21/147 (14%)
Query: 29 QIDAAFTYSKNGKTYFFKGSKYWRY-----TGKSMDDGYPKDISEGFTGIPD------NI 77
I+AAF S + YFF +KY R + IS GF + I
Sbjct: 3 YINAAFRSSSEYEVYFFAKNKYVRLHYTPGASSDTILTNLRLISSGFPSLAGTPFAEPGI 62
Query: 78 DAALVWSGNGKIYFFKGSKFWKFDPSSKPP--VKSTYPKPTSNW------EGIPDNIDAA 129
D + + Y F G+ D + P + D+ID+A
Sbjct: 63 DCSFHTE-ASEAYVFSGNHSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSA 121
Query: 130 LHYT-NGYTYFFKGSQYWRFNDKSFSV 155
T Y FKG++Y R S +
Sbjct: 122 FRSTKGKEVYLFKGNKYVRIAYDSKQL 148
Score = 72.0 bits (176), Expect = 2e-16
Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 9/89 (10%)
Query: 77 IDAALVWSGNGKIYFFKGSKFWKFD--PSSKPPVKSTYPKPTSN-WEGIPD------NID 127
I+AA S ++YFF +K+ + P + T + S+ + + ID
Sbjct: 4 INAAFRSSSEYEVYFFAKNKYVRLHYTPGASSDTILTNLRLISSGFPSLAGTPFAEPGID 63
Query: 128 AALHYTNGYTYFFKGSQYWRFNDKSFSVN 156
+ H Y F G+ + + N
Sbjct: 64 CSFHTEASEAYVFSGNHSAYIDYAPGTTN 92
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport,
iron metabolism, binding protein; HET: HEM; 2.30A
{Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB:
1qjs_A*
Length = 460
Score = 142 bits (359), Expect = 3e-41
Identities = 35/172 (20%), Positives = 63/172 (36%), Gaps = 27/172 (15%)
Query: 2 HYWKLTDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYT---GKSM 58
HYW+L D + I+ W P +DAAF++ K Y + +K + + G ++
Sbjct: 279 HYWRL-DTNRDGWHSWPIAHQWPQGPSTVDAAFSW--EDKLYLIQDTKVYVFLTKGGYTL 335
Query: 59 DDGYPKDISEGFTGIP----DNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPK 114
+GYPK + + P + +DAA V G+ +++ G + W D S
Sbjct: 336 VNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAGRRLWWLDLKSGA------QA 389
Query: 115 PTSNWEGIPDNIDAAL-----------HYTNGYTYFFKGSQYWRFNDKSFSV 155
+ + +D AL + Y G + +
Sbjct: 390 TWTELPWPHEKVDGALCMEKPLGPNSCSTSGPNLYLIHGPNLYCYRHVDKLN 441
Score = 136 bits (343), Expect = 6e-39
Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 19/158 (12%)
Query: 2 HYWKLTDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDG 61
WK G +LIS+ W G +DAAF + + Y KG K W YT + +
Sbjct: 76 FVWKSH-----RGIRELISERWKNFIGPVDAAFRHG-HTSVYLIKGDKVWVYTSEKNEKV 129
Query: 62 YPKDISEGFTGIPDNIDAALVW----SGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTS 117
YPK + + F GIP +DAA+ + I FF+G++ W +D ++ + +
Sbjct: 130 YPKSLQDEFPGIPFPLDAAVECHRGECQDEGILFFQGNRKWFWDLTTGTKKERS------ 183
Query: 118 NWEGIPDNIDAALHYTNGYTYFFKGSQYWRFNDKSFSV 155
W + + A G Y F+G+Q+ RFN S V
Sbjct: 184 -WPAVGNCTSALRW--LGRYYCFQGNQFLRFNPVSGEV 218
Score = 96.4 bits (239), Expect = 4e-24
Identities = 23/133 (17%), Positives = 39/133 (29%), Gaps = 21/133 (15%)
Query: 2 HYWKLTDDG---IAEGYPKLISKSWIGLPG----QIDAAFTYSKNGKTYFFKGSKYWRYT 54
+ G + GYPK + K P +DAAF + + + G + W
Sbjct: 323 KVYVFLTKGGYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAGRRLWWLD 382
Query: 55 GKSMDDGYPKDISEGFTGIPDNIDAALVW----------SGNGKIYFFKGSKFWKFDPSS 104
KS + + +D AL + +Y G + +
Sbjct: 383 LKSG----AQATWTELPWPHEKVDGALCMEKPLGPNSCSTSGPNLYLIHGPNLYCYRHVD 438
Query: 105 KPPVKSTYPKPTS 117
K P+P
Sbjct: 439 KLNAAKNLPQPQR 451
Score = 94.1 bits (233), Expect = 2e-23
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 15/126 (11%)
Query: 33 AFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIPDNIDAALVWSGNGKIYFF 92
A T NG FFK W+ G + ISE + +DAA + +Y
Sbjct: 60 ATTLDDNGTMLFFKDEFVWK-----SHRGIRELISERWKNFIGPVDAAFRHG-HTSVYLI 113
Query: 93 KGSKFWKFDPSSKPPVKSTYPKPTSN-WEGIPDNIDAALHY-----TNGYTYFFKGSQYW 146
KG K W + + YPK + + GIP +DAA+ + FF+G++ W
Sbjct: 114 KGDKVWVYTSEK---NEKVYPKSLQDEFPGIPFPLDAAVECHRGECQDEGILFFQGNRKW 170
Query: 147 RFNDKS 152
++ +
Sbjct: 171 FWDLTT 176
Score = 84.8 bits (209), Expect = 4e-20
Identities = 34/166 (20%), Positives = 61/166 (36%), Gaps = 34/166 (20%)
Query: 13 EGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSM--DDGYPKDISEGF 70
+SW + A G+ Y F+G+++ R+ S GYP D+ + F
Sbjct: 174 LTTGTKKERSWPAVGNCTSALR---WLGRYYCFQGNQFLRFNPVSGEVPPGYPLDVRDYF 230
Query: 71 T-----------------------GIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPP 107
PD + +A+V +G Y F GS +W+ D +
Sbjct: 231 LSCPGRGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSGSHYWRLDTNRDGW 290
Query: 108 VKSTYPKPTSN-WEGIPDNIDAALHYTNGYTYFFKGSQYWRFNDKS 152
+ P ++ W P +DAA + + Y + ++ + F K
Sbjct: 291 ----HSWPIAHQWPQGPSTVDAAFSWEDK-LYLIQDTKVYVFLTKG 331
Score = 62.5 bits (151), Expect = 2e-12
Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 8/75 (10%)
Query: 76 NIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSNWEGIPDNIDAALHYTNG 135
+ DA + NG + FFK WK + + W+ +DAA + +
Sbjct: 57 SFDATTLD-DNGTMLFFKDEFVWKSHRGIRELISER-------WKNFIGPVDAAFRHGHT 108
Query: 136 YTYFFKGSQYWRFND 150
Y KG + W +
Sbjct: 109 SVYLIKGDKVWVYTS 123
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus
sativus} PDB: 3s0l_A 3v6n_A 3s18_A
Length = 227
Score = 125 bits (315), Expect = 9e-37
Identities = 36/182 (19%), Positives = 57/182 (31%), Gaps = 23/182 (12%)
Query: 1 LHYWKLTDDGIAEGYPKLISKSWIGLPGQ------IDAAFTYSKNGKTYFFKGSKYWRY- 53
L Y + P + + L ID +F ++N + + F +
Sbjct: 29 LDYAPGSSRDKVLYGPTPVRDGFKSLNQTIFGSYGIDCSF-DTENNEAFIFYENFCALID 87
Query: 54 ----TGKSMDDGYPKDISEGF-----TGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSS 104
+ K PK I++ F T IDAA + ++Y FKG ++ + D S
Sbjct: 88 YAPHSKKDKIILGPKKIADVFPFFEGTVFESGIDAAYRSTRGKEVYLFKGDQYARIDYGS 147
Query: 105 KPPVKSTYPKPTSNWE-----GIPDNIDAALH-YTNGYTYFFKGSQYWRFNDKSFSVNCR 158
V +S + DAA + YFFK Y R
Sbjct: 148 NSMVNKEIKSISSGYPCFRNTIFESGADAAFASHKTNEVYFFKDDHYARVKVTPXXKLXI 207
Query: 159 PG 160
Sbjct: 208 MD 209
Score = 102 bits (256), Expect = 4e-28
Identities = 33/136 (24%), Positives = 50/136 (36%), Gaps = 14/136 (10%)
Query: 3 YWKLTDDGIAEGYPKLISKSWIGLPGQ-----IDAAFTYSKNGKTYFFKGSKYWRY--TG 55
Y + PK I+ + G IDAA+ ++ + Y FKG +Y R
Sbjct: 88 YAPHSKKDKIILGPKKIADVFPFFEGTVFESGIDAAYRSTRGKEVYLFKGDQYARIDYGS 147
Query: 56 KSMDDGYPKDISEGF-----TGIPDNIDAALVWSGNGKIYFFKGSKFWKFD--PSSKPPV 108
SM + K IS G+ T DAA ++YFFK + + P K +
Sbjct: 148 NSMVNKEIKSISSGYPCFRNTIFESGADAAFASHKTNEVYFFKDDHYARVKVTPXXKLXI 207
Query: 109 KSTYPKPTSNWEGIPD 124
+ W + D
Sbjct: 208 MDGVREIVDYWPSLKD 223
Score = 99.4 bits (247), Expect = 1e-26
Identities = 41/149 (27%), Positives = 57/149 (38%), Gaps = 21/149 (14%)
Query: 27 PGQIDAAFTYSKNGKTYFFKGSKYWRY-----TGKSMDDGYPKDISEGFTGIPD------ 75
PG I+AAF SKN + YFF KY + + P + +GF +
Sbjct: 3 PGYINAAFRSSKNNEAYFFINDKYVLLDYAPGSSRDKVLYGPTPVRDGFKSLNQTIFGSY 62
Query: 76 NIDAALVWSGNGKIYFFKGSKFWKFD--PSSKPPVKSTYPKPTSNW------EGIPDNID 127
ID + + N + + F + D P SK PK ++ ID
Sbjct: 63 GIDCS-FDTENNEAFIFYENFCALIDYAPHSKKDKIILGPKKIADVFPFFEGTVFESGID 121
Query: 128 AALHYT-NGYTYFFKGSQYWRFNDKSFSV 155
AA T Y FKG QY R + S S+
Sbjct: 122 AAYRSTRGKEVYLFKGDQYARIDYGSNSM 150
Score = 62.0 bits (150), Expect = 2e-12
Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 11/85 (12%)
Query: 2 HYWK--LTDDGIAEGYPKLISKSW-----IGLPGQIDAAFTYSKNGKTYFFKGSKYWRYT 54
Y + + + K IS + DAAF K + YFFK Y R
Sbjct: 139 QYARIDYGSNSMVNKEIKSISSGYPCFRNTIFESGADAAFASHKTNEVYFFKDDHYARVK 198
Query: 55 ----GKSMDDGYPKDISEGFTGIPD 75
K ++I + + + D
Sbjct: 199 VTPXXKLXIMDGVREIVDYWPSLKD 223
Score = 35.8 bits (82), Expect = 0.003
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 123 PDNIDAALHYT-NGYTYFFKGSQYWRFNDKSFSVN 156
P I+AA + N YFF +Y + S
Sbjct: 3 PGYINAAFRSSKNNEAYFFINDKYVLLDYAPGSSR 37
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 29.4 bits (66), Expect = 0.45
Identities = 16/88 (18%), Positives = 26/88 (29%), Gaps = 9/88 (10%)
Query: 56 KSMDDGYPKDISEGFTGIPDNIDAALVWSGNGKI---------YFFKGSKFWKFDPSSKP 106
K DDG P D+ + + + DN+ ++ K K
Sbjct: 3 KDDDDGAPADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKS 62
Query: 107 PVKSTYPKPTSNWEGIPDNIDAALHYTN 134
P ++ + ID AL N
Sbjct: 63 PDSPEMKDFRHGFDILVGQIDDALKLAN 90
>1gyh_A Arabinan endo-1,5-alpha-L-arabinosidase A; arabinanase, hydrolase,
propeller, catalysis, pseudomonas; 1.89A {Cellvibrio
cellulosa} SCOP: b.67.2.1 PDB: 1gyd_B 1gye_B*
Length = 318
Score = 27.7 bits (62), Expect = 1.5
Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 15/89 (16%)
Query: 67 SEGFTGIPDNIDAALVWSGNGKIY-----FFKGSKFWKFDPSSKPPVKSTYPKPTSNWEG 121
S + + I A++ +G+++ F+ G K +K + P + + E
Sbjct: 118 SVPQRDLWNAIAPAIIADDHGQVWMSFGSFWGGLKLFKLNDDLTRPAEPQEWHSIAKLER 177
Query: 122 IPDNIDAA----------LHYTNGYTYFF 140
D+ + Y Y F
Sbjct: 178 SVLMDDSQAGSAQIEAPFILRKGDYYYLF 206
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal
binding protein; HET: PLP B12 5AD; 2.01A {Clostridium
sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A*
3kox_A*
Length = 763
Score = 28.0 bits (62), Expect = 1.6
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 52 RYTGKSMDDGYPKDISEGFTGIP 74
R G+S DG + +G G+P
Sbjct: 109 RTAGQSHYDGLIEGTPQGIGGVP 131
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein
structure initiative, southeast collaboratory for S
genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Length = 208
Score = 27.3 bits (60), Expect = 2.2
Identities = 15/62 (24%), Positives = 19/62 (30%), Gaps = 8/62 (12%)
Query: 21 KSWIGLPGQIDAAFTYSKNGKTYFFKGSKYW-------RYTGKSMDDGYPKDISEGFTGI 73
K+W+ F Y+ G G K Y GK Y K I F G+
Sbjct: 114 KAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYEGKDFASQYIKAIL-NFIGV 172
Query: 74 PD 75
Sbjct: 173 DQ 174
>3cu9_A Intracellular arabinanase; glycosyl hydrolase, high resolution,
beta-prope geobacillus stearothermophilus, hydrolase;
HET: GOL; 1.06A {Geobacillus stearothermophilus} PDB:
3d61_A* 3d60_A 3d5y_A 3d5z_A* 1wl7_A
Length = 314
Score = 26.9 bits (60), Expect = 2.8
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 77 IDAALVWSGNGKIYFFKGSKF-----WKFDPSSKPPVKSTYPKPTSNWEGIPDNIDAA-L 130
ID +V+ G+ + GS + + D + P ++ P+ I+A +
Sbjct: 145 IDPNVVFDQEGQPWLSFGSFWSGIQLIQLDTETMKPAAQAELLTIASRGEEPNAIEAPFI 204
Query: 131 HYTNGYTYFF 140
NGY Y F
Sbjct: 205 VCRNGYYYLF 214
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.1 bits (59), Expect = 3.6
Identities = 12/101 (11%), Positives = 23/101 (22%), Gaps = 21/101 (20%)
Query: 79 AALVWSGNGKIYFFKGSKFW-KFDPSSKP-----PVKSTYPKPTSNWEGIPDNIDAALHY 132
A V FW + P ++ + NW D+
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 133 TN----GYTYFFKGSQY----------WRFND-KSFSVNCR 158
+ K Y +F+++C+
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267
>1uv4_A Arabinase, arabinan-endo 1,5-alpha-L-arabinase; hydrolase,
propeller, catalysis; 1.50A {Bacillus subtilis} SCOP:
b.67.2.1
Length = 293
Score = 26.5 bits (59), Expect = 4.9
Identities = 20/74 (27%), Positives = 25/74 (33%), Gaps = 16/74 (21%)
Query: 77 IDAALVWSGNGKIYFFKGSKF-----WKFDPSSKPPVKSTY-----PKPTSNWEGIPDNI 126
ID L + +G + GS + K D S+ P S Y P E
Sbjct: 132 IDPELTFDKDGNPWLAFGSFWSGIKLTKLDKSTMKPTGSLYSIAARPNNGGALEA----- 186
Query: 127 DAALHYTNGYTYFF 140
L Y NGY Y
Sbjct: 187 -PTLTYQNGYYYLM 199
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus,
apoptosis, UBL conjugation pathwayc, CL transcription
regulation, transcription, phosphoprotein; 1.80A {Homo
sapiens} PDB: 3ek9_A
Length = 217
Score = 25.4 bits (55), Expect = 7.8
Identities = 16/107 (14%), Positives = 29/107 (27%), Gaps = 1/107 (0%)
Query: 40 GKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIPDNIDAALVWSG-NGKIYFFKGSKFW 98
GK + +G W + G + P D G N + + + +
Sbjct: 78 GKRGYSRGLHAWEISWPLEQRGTHAVVGVATALAPLQTDHYAALLGSNSESWGWDIGRGK 137
Query: 99 KFDPSSKPPVKSTYPKPTSNWEGIPDNIDAALHYTNGYTYFFKGSQY 145
+ S P +P+ + L G + G Y
Sbjct: 138 LYHQSKGPGAPQYPAGTQGEQLEVPERLLVVLDMEEGTLGYAIGGTY 184
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.139 0.467
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,782,662
Number of extensions: 161327
Number of successful extensions: 648
Number of sequences better than 10.0: 1
Number of HSP's gapped: 465
Number of HSP's successfully gapped: 99
Length of query: 161
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 75
Effective length of database: 4,300,587
Effective search space: 322544025
Effective search space used: 322544025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.4 bits)