RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5152
(161 letters)
>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 140 bits (355), Expect = 1e-43
Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 3/155 (1%)
Query: 2 HYWKLTDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDG 61
+W+L + + L W LP +IDAA+ + + + F+G K+W G + +G
Sbjct: 28 FFWRLHPQQV-DAELFLTKSFWPELPNRIDAAYEHPSHDLIFIFRGRKFWALNGYDILEG 86
Query: 62 YPKDISE-GFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSNWE 120
YPK ISE G I AA+ + GK F G++ W++D ++ K ++
Sbjct: 87 YPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGNQVWRYDDTNHIMDKDYPRLIEEDFP 146
Query: 121 GIPDNIDAALHYTNGYTYFFKGSQYWRFNDKSFSV 155
GI D +DA NGY YFF G + ++ S +
Sbjct: 147 GIGDKVDAVYEK-NGYIYFFNGPIQFEYSIWSNRI 180
Score = 85.5 bits (211), Expect = 5e-22
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 9/126 (7%)
Query: 30 IDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIPDNIDAALVWSGNGKI 89
+DA + G+T FK +WR + D + +P+ IDAA + I
Sbjct: 11 LDAITSL--RGETMIFKDRFFWRLHPQQ-VDAELFLTKSFWPELPNRIDAAYEHPSHDLI 67
Query: 90 YFFKGSKFWKFDPSSKPPVKSTYPKPTSNWE--GIPDNIDAALHYT-NGYTYFFKGSQYW 146
+ F+G KFW + + YPK S I AA+H+ G T F G+Q W
Sbjct: 68 FIFRGRKFWALNGYD---ILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGNQVW 124
Query: 147 RFNDKS 152
R++D +
Sbjct: 125 RYDDTN 130
>d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 200
Score = 134 bits (339), Expect = 3e-41
Identities = 52/157 (33%), Positives = 82/157 (52%), Gaps = 4/157 (2%)
Query: 2 HYWKLTDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDG 61
W+ P L++ W LP +IDA + + K FF G++YW Y+ +++ G
Sbjct: 32 FIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWIYSASTLERG 91
Query: 62 YPKDISE-GFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSN-W 119
YPK ++ G +DAA WS N K Y F G KFW+++ K + +PK ++ W
Sbjct: 92 YPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRYNEVKK-KMDPGFPKLIADAW 150
Query: 120 EGIPDNIDAALHYT-NGYTYFFKGSQYWRFNDKSFSV 155
IPDN+DA + G++YFFKG+ Y + ++S
Sbjct: 151 NAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKS 187
Score = 102 bits (256), Expect = 1e-28
Identities = 46/121 (38%), Positives = 66/121 (54%), Gaps = 6/121 (4%)
Query: 2 HYWKLTDDGIAEGYPKLISKSWI-GLPGQIDAAFTYSKNGKTYFFKGSKYWRY--TGKSM 58
YW + + GYPK ++ + ++DAAF +SKN KTY F G K+WRY K M
Sbjct: 79 EYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKM 138
Query: 59 DDGYPKDISEGFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSN 118
D G+PK I++ + IPDN+DA + G G YFFKG+ + K + S +KS +
Sbjct: 139 DPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQS---LKSVKFGSIKS 195
Query: 119 W 119
Sbjct: 196 D 196
Score = 83.2 bits (205), Expect = 3e-21
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%)
Query: 31 DAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIPDNIDAALVWSGNGKIY 90
D G+ +FFK WR P ++ + +P+ IDA K
Sbjct: 16 DGIAQI--RGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAV 73
Query: 91 FFKGSKFWKFDPSSKPPVKSTYPKPTSNW--EGIPDNIDAALHYT-NGYTYFFKGSQYWR 147
FF G+++W + S+ YPKP ++ +DAA +++ N TY F G ++WR
Sbjct: 74 FFAGNEYWIYSASTLER---GYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWR 130
Query: 148 FNDKSFSV 155
+N+ +
Sbjct: 131 YNEVKKKM 138
Score = 64.4 bits (156), Expect = 6e-14
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 2 HYWKLTDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDG 61
+ + G+PKLI+ +W +P +DA G +YFFKG+ Y + +S+
Sbjct: 129 WRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSV 188
Query: 62 YPKDISEGFTG 72
I + G
Sbjct: 189 KFGSIKSDWLG 199
>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 134 bits (339), Expect = 3e-41
Identities = 52/157 (33%), Positives = 83/157 (52%), Gaps = 6/157 (3%)
Query: 2 HYWKLTDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDG 61
Y + E IS W LP ++AA+ ++ + FFKG+KYW G+++ G
Sbjct: 31 FYMRTNPFY-PEVELNFISVFWPQLPNGLEAAYEFADRDEVRFFKGNKYWAVQGQNVLHG 89
Query: 62 YPKDISE--GFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTS-N 118
YPKDI GF +IDAAL GK YFF +K+W++D + + YPK + +
Sbjct: 90 YPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVANKYWRYDEYKR-SMDPGYPKMIAHD 148
Query: 119 WEGIPDNIDAALHYTNGYTYFFKGSQYWRFNDKSFSV 155
+ GI +DA +G+ YFF G++ ++F+ K+ +
Sbjct: 149 FPGIGHKVDAVFMK-DGFFYFFHGTRQYKFDPKTKRI 184
Score = 80.1 bits (197), Expect = 5e-20
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 8/121 (6%)
Query: 39 NGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIPDNIDAALVWSGNGKIYFFKGSKFW 98
G+ FFK Y R + IS + +P+ ++AA ++ ++ FFKG+K+W
Sbjct: 21 RGEVMFFKDRFYMRTNP-FYPEVELNFISVFWPQLPNGLEAAYEFADRDEVRFFKGNKYW 79
Query: 99 KFDPSSKPPVKSTYPKPTSNWEGIP---DNIDAALHYT-NGYTYFFKGSQYWRFNDKSFS 154
+ V YPK + G P +IDAAL G TYFF ++YWR+++ S
Sbjct: 80 AVQGQN---VLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVANKYWRYDEYKRS 136
Query: 155 V 155
+
Sbjct: 137 M 137
Score = 50.4 bits (120), Expect = 5e-09
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 86 NGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSN-WEGIPDNIDAALHYTNGY-TYFFKGS 143
G++ FFK + + +P S W +P+ ++AA + + FFKG+
Sbjct: 21 RGEVMFFKDRFYMRTNPFYPEV----ELNFISVFWPQLPNGLEAAYEFADRDEVRFFKGN 76
Query: 144 QYWRFNDKSFSVNCRPGI 161
+YW ++ I
Sbjct: 77 KYWAVQGQNVLHGYPKDI 94
>d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 192
Score = 130 bits (329), Expect = 9e-40
Identities = 49/159 (30%), Positives = 75/159 (47%), Gaps = 19/159 (11%)
Query: 2 HYWKLTDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDG 61
WK G +LIS+ W G +DAAF + + Y KG K W YT + +
Sbjct: 28 FVWKSH-----RGIRELISERWKNFIGPVDAAFRHG-HTSVYLIKGDKVWVYTSEKNEKV 81
Query: 62 YPKDISEGFTGIPDNIDAALVW----SGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTS 117
YPK + + F GIP +DAA+ + I FF+G++ W +D ++ + ++P
Sbjct: 82 YPKSLQDEFPGIPFPLDAAVECHRGECQDEGILFFQGNRKWFWDLTTGTKKERSWPA--- 138
Query: 118 NWEGIPDNIDAALHYTNGYTYFFKGSQYWRFNDKSFSVN 156
N +AL + G Y F+G+Q+ RFN S V
Sbjct: 139 -----VGNCTSALRW-LGRYYCFQGNQFLRFNPVSGEVP 171
Score = 87.8 bits (217), Expect = 5e-23
Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 15/126 (11%)
Query: 33 AFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIPDNIDAALVWSGNGKIYFF 92
A T NG FFK W+ G + ISE + +DAA G+ +Y
Sbjct: 12 ATTLDDNGTMLFFKDEFVWK-----SHRGIRELISERWKNFIGPVDAAFRH-GHTSVYLI 65
Query: 93 KGSKFWKFDPSSKPPVKSTYPKPTSN-WEGIPDNIDAALHY-----TNGYTYFFKGSQYW 146
KG K W + + YPK + + GIP +DAA+ + FF+G++ W
Sbjct: 66 KGDKVWVYTSEK---NEKVYPKSLQDEFPGIPFPLDAAVECHRGECQDEGILFFQGNRKW 122
Query: 147 RFNDKS 152
++ +
Sbjct: 123 FWDLTT 128
Score = 50.8 bits (121), Expect = 4e-09
Identities = 22/118 (18%), Positives = 36/118 (30%), Gaps = 45/118 (38%)
Query: 2 HYWKLTDDGIAEGYPKLISKSWIGLPGQIDAAFTY------------------------- 36
W T + + YPK + + G+P +DAA
Sbjct: 69 KVWVYTSEKNEKVYPKSLQDEFPGIPFPLDAAVECHRGECQDEGILFFQGNRKWFWDLTT 128
Query: 37 ------------------SKNGKTYFFKGSKYWRYTGKSM--DDGYPKDISEGFTGIP 74
G+ Y F+G+++ R+ S GYP D+ + F P
Sbjct: 129 GTKKERSWPAVGNCTSALRWLGRYYCFQGNQFLRFNPVSGEVPPGYPLDVRDYFLSCP 186
Score = 26.6 bits (58), Expect = 1.2
Identities = 5/29 (17%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 2 HYWKLTDDG--IAEGYPKLISKSWIGLPG 28
+ + + GYP + ++ PG
Sbjct: 159 QFLRFNPVSGEVPPGYPLDVRDYFLSCPG 187
>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 195
Score = 128 bits (322), Expect = 1e-38
Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 4/156 (2%)
Query: 2 HYWKLTDD-GIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDD 60
YW+ ++ G P LI+ W LP ++D+ F + K +FF G + W YTG S+
Sbjct: 26 KYWRFSEGRGSRPQGPFLIADKWPALPRKLDSVFEEPLSKKLFFFSGRQVWVYTGASVL- 84
Query: 61 GYPKDISEGFTGIPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSNWE 120
P+ + + G + SG GK+ F G + W+FD ++ + + +
Sbjct: 85 -GPRRLDKLGLGADVAQVTGALRSGRGKMLLFSGRRLWRFDVKAQMVDPRSASEVDRMFP 143
Query: 121 GIPDNIDAALHYTNGYTYFFKGSQYWRFNDKSFSVN 156
G+P + + YF + YWR + +S
Sbjct: 144 GVPLDTHDVFQF-REKAYFCQDRFYWRVSSRSELNQ 178
Score = 87.4 bits (216), Expect = 7e-23
Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 10/130 (7%)
Query: 30 IDAAFTYSKNGKTYFFKGSKYWRYT-GKSMDDGYPKDISEGFTGIPDNIDAALVWSGNGK 88
DA + Y FK KYWR++ G+ P I++ + +P +D+ + K
Sbjct: 9 FDAIAEI--GNQLYLFKDGKYWRFSEGRGSRPQGPFLIADKWPALPRKLDSVFEEPLSKK 66
Query: 89 IYFFKGSKFWKFDPSSKPPVKSTYPKPTSNWE--GIPDNIDAALHYTNGYTYFFKGSQYW 146
++FF G + W + + P+ + AL G F G + W
Sbjct: 67 LFFFSGRQVWVYTGA-----SVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSGRRLW 121
Query: 147 RFNDKSFSVN 156
RF+ K+ V+
Sbjct: 122 RFDVKAQMVD 131
>d1hxna_ b.66.1.1 (A:) Hemopexin {Rabbit (Oryctolagus cuniculus)
[TaxId: 9986]}
Length = 210
Score = 126 bits (318), Expect = 6e-38
Identities = 34/168 (20%), Positives = 63/168 (37%), Gaps = 27/168 (16%)
Query: 2 HYWKLTDDGIAEGYPKLISKSWIGLPGQIDAAFTYSKNGKTYFFKGSKYWRYT---GKSM 58
HYW+L + + I+ W P +DAAF++ K Y + +K + + G ++
Sbjct: 29 HYWRLDTNR-DGWHSWPIAHQWPQGPSTVDAAFSW--EDKLYLIQDTKVYVFLTKGGYTL 85
Query: 59 DDGYPKDISEGFTGIP----DNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPK 114
+GYPK + + P + +DAA V G+ +++ G + W D S
Sbjct: 86 VNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAGRRLWWLDLKSGA------QA 139
Query: 115 PTSNWEGIPDNIDAAL-----------HYTNGYTYFFKGSQYWRFNDK 151
+ + +D AL + Y G + +
Sbjct: 140 TWTELPWPHEKVDGALCMEKPLGPNSCSTSGPNLYLIHGPNLYCYRHV 187
Score = 99.4 bits (247), Expect = 3e-27
Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 10/131 (7%)
Query: 30 IDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTGIPDNIDAALVWSGNGKI 89
+ A + +G TY F GS YWR + D + I+ + P +DAA W K+
Sbjct: 11 LSAMVS-DNHGATYVFSGSHYWRLD-TNRDGWHSWPIAHQWPQGPSTVDAAFSW--EDKL 66
Query: 90 YFFKGSKFWKFDPSSKPPVKSTYPKPTSNWEGIP-----DNIDAALHYT-NGYTYFFKGS 143
Y + +K + F + + YPK G P + +DAA + + G
Sbjct: 67 YLIQDTKVYVFLTKGGYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAGR 126
Query: 144 QYWRFNDKSFS 154
+ W + KS +
Sbjct: 127 RLWWLDLKSGA 137
Score = 90.2 bits (223), Expect = 1e-23
Identities = 22/129 (17%), Positives = 37/129 (28%), Gaps = 18/129 (13%)
Query: 3 YWKLTDDGIAEGYPKLISKSWIGLPGQ----IDAAFTYSKNGKTYFFKGSKYWRYTGKSM 58
+ + GYPK + K P +DAAF + + + G + W KS
Sbjct: 77 FLTKGGYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAGRRLWWLDLKS- 135
Query: 59 DDGYPKDISEGFTGIPDNIDAALVWS----------GNGKIYFFKGSKFWKFDPSSKPPV 108
+ + +D AL +Y G + + K
Sbjct: 136 ---GAQATWTELPWPHEKVDGALCMEKPLGPNSCSTSGPNLYLIHGPNLYCYRHVDKLNA 192
Query: 109 KSTYPKPTS 117
P+P
Sbjct: 193 AKNLPQPQR 201
Score = 33.1 bits (75), Expect = 0.008
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 125 NIDAALHYTNGYTYFFKGSQYWRFNDKS 152
+ A + +G TY F GS YWR +
Sbjct: 10 VLSAMVSDNHGATYVFSGSHYWRLDTNR 37
>d1onra_ c.1.10.1 (A:) Transaldolase {Escherichia coli [TaxId: 562]}
Length = 316
Score = 28.9 bits (64), Expect = 0.25
Identities = 20/135 (14%), Positives = 38/135 (28%), Gaps = 10/135 (7%)
Query: 16 PKLISKSWIGLP---GQIDAAFTYSKNGKTYFFKGSKYWRYTGKSMDDGYPKDISEGFTG 72
P LI + +P ID A + K ++ + +I + G
Sbjct: 35 PSLILNA-AQIPEYRKLIDDAVAW---AKQQSNDRAQQIVDATDKLAVNIGLEILKLVPG 90
Query: 73 IPDNIDAALVWSGNGKIYFFKGSKFWKFDPSSKPPVKSTYPKPTSNWEGIP--DNIDAAL 130
+ + S + + K + K + K S W+GI + ++
Sbjct: 91 -RISTEVDARLSYDTEASIAKAKRLIKLYNDAGISNDRILIKLASTWQGIRAAEQLEKEG 149
Query: 131 HYTNGYTYFFKGSQY 145
N F
Sbjct: 150 INCNLTLLFSFAQAR 164
>d2f5tx2 d.136.1.5 (X:110-246) Transcriptional regulator TrmB
{Thermococcus litoralis [TaxId: 2265]}
Length = 137
Score = 23.8 bits (51), Expect = 8.1
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 100 FDPSSKPPVKSTYPK 114
FD P KSTYP+
Sbjct: 99 FDSIGPPSFKSTYPE 113
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.139 0.467
Gapped
Lambda K H
0.267 0.0451 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 723,452
Number of extensions: 35076
Number of successful extensions: 199
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 41
Length of query: 161
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,336,656
Effective search space: 110942448
Effective search space used: 110942448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.3 bits)