BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy5156
         (389 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q82851|POL_JEMBR Gag-Pol polyprotein OS=Jembrana disease virus GN=gag-pol PE=3 SV=1
          Length = 1432

 Score = 36.6 bits (83), Expect = 0.30,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 33/116 (28%)

Query: 105  HAELFSILQSLKNAELLNIKKVLIISDSLSSFQAISNLYHPNPLVKEIQETYSSAQISIK 164
             AEL ++L +L++       K+ II+DS  +F+ +          +E  ET+    +   
Sbjct: 997  QAELKAVLMALQDGP----AKMNIITDSRYAFEGM----------REEPETWGREGL--- 1039

Query: 165  FLWCPSHPCWYFWKRSSSQISIK----FLWCPSHVGISGNDQADTEAKKATSEPIT 216
                        WK    ++  K      W P H GI GN + D E +KA   PIT
Sbjct: 1040 ------------WKEIGEELRRKEYVGVSWVPGHKGIGGNTEVDQEVQKALQGPIT 1083


>sp|P05895|POL_SIVVT Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
            (isolate AGM TYO-1) GN=gag-pol PE=3 SV=2
          Length = 1467

 Score = 34.3 bits (77), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 7/59 (11%)

Query: 186  IKFLWCPSHVGISGNDQADTEAKKATSEPITNHSLLLEEMKSLAKKHFYQKWNTTWSNV 244
            I   W P+H GI GN++ D    K          L LE+++   +KH  ++++  W N+
Sbjct: 1147 IYLQWVPAHKGIGGNEEIDKLVSKG-----IRRVLFLEKIEEAQEKH--ERYHNNWKNL 1198


>sp|P03371|POL_EIAVY Pol polyprotein OS=Equine infectious anemia virus (strain Wyoming)
           GN=pol PE=3 SV=1
          Length = 1145

 Score = 33.5 bits (75), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 20/43 (46%)

Query: 166 LWCPSHPCWYFWKRSSSQISIKFLWCPSHVGISGNDQADTEAK 208
           L  P +P W   +    +  + F W P H GI GN  AD  AK
Sbjct: 693 LEGPQNPWWPIIQNIREKEIVYFAWVPGHKGIYGNQLADEAAK 735


>sp|P11204|POL_EIAV9 Pol polyprotein OS=Equine infectious anemia virus (isolate 1369)
           GN=pol PE=1 SV=1
          Length = 1146

 Score = 33.1 bits (74), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 19/43 (44%)

Query: 166 LWCPSHPCWYFWKRSSSQISIKFLWCPSHVGISGNDQADTEAK 208
           L  P  P W   +    +  + F W P H GI GN  AD  AK
Sbjct: 694 LEGPQSPWWPIIQNIREKEIVYFAWVPGHKGICGNQLADEAAK 736


>sp|P32542|POL_EIAVC Pol polyprotein OS=Equine infectious anemia virus (isolate CL22)
           GN=pol PE=1 SV=1
          Length = 1146

 Score = 33.1 bits (74), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 19/43 (44%)

Query: 166 LWCPSHPCWYFWKRSSSQISIKFLWCPSHVGISGNDQADTEAK 208
           L  P  P W   +    +  + F W P H GI GN  AD  AK
Sbjct: 694 LEGPQSPWWPIIQNIREKEIVYFAWVPGHKGICGNQLADEAAK 736


>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
            (isolate ANT70) GN=gag-pol PE=3 SV=3
          Length = 1435

 Score = 32.7 bits (73), Expect = 4.5,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 37/138 (26%)

Query: 106  AELFSILQSLKNAELLNIKKVLIISDSLSSFQAISN--LYHPNPLVKEIQETYSSAQISI 163
            AEL +IL +L++++    + V I++DS  +   IS+      +P+V++I E  +  +   
Sbjct: 1063 AELMAILLALQDSK----ETVNIVTDSQYALGVISSQPTQSESPIVQQIIEELTKKE--- 1115

Query: 164  KFLWCPSHPCWYFWKRSSSQISIKFLWCPSHVGISGNDQADTEAKKATSEPITNHSLLLE 223
                                  +   W P+H GI GN++ D    K  S+ I    L LE
Sbjct: 1116 ---------------------QVYLTWVPAHKGIGGNEKID----KLVSKDI-RRVLFLE 1149

Query: 224  EMKSLAKKHFYQKWNTTW 241
             +    + H  +K+++ W
Sbjct: 1150 GIDQAQEDH--EKYHSNW 1165


>sp|P80090|MPI3_LYMST Molluscan insulin-related peptide 3 OS=Lymnaea stagnalis PE=1 SV=2
          Length = 122

 Score = 32.0 bits (71), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 288 SYLFKREERP--ICDSCHEPVTVEHIILHC 315
           SYL KRE RP  +C+ C    TV+ ++ +C
Sbjct: 93  SYLTKRESRPSIVCECCFNQCTVQELLAYC 122


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.133    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,008,205
Number of Sequences: 539616
Number of extensions: 5051712
Number of successful extensions: 14418
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 14409
Number of HSP's gapped (non-prelim): 23
length of query: 389
length of database: 191,569,459
effective HSP length: 119
effective length of query: 270
effective length of database: 127,355,155
effective search space: 34385891850
effective search space used: 34385891850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)