Query psy5156
Match_columns 389
No_of_seqs 245 out of 1707
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 18:48:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5156.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5156hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkb_A Ribonuclease H1, HS-RNA 99.9 4.3E-24 1.5E-28 188.0 13.2 141 13-214 3-152 (154)
2 3qio_A GAG-POL polyprotein; RN 99.9 6.8E-24 2.3E-28 186.4 10.7 140 11-213 6-147 (150)
3 3h08_A RNH (ribonuclease H); R 99.9 6E-24 2.1E-28 185.2 7.9 136 15-213 2-144 (146)
4 1jl1_A Ribonuclease HI; RNAse 99.9 6.6E-23 2.2E-27 180.8 10.0 141 16-216 3-146 (155)
5 2e4l_A Ribonuclease HI, RNAse 99.9 9.8E-23 3.4E-27 180.3 10.4 138 16-213 5-145 (158)
6 2kq2_A Ribonuclease H-related 99.9 6.1E-23 2.1E-27 179.6 8.6 132 14-217 3-141 (147)
7 3p1g_A Xenotropic murine leuke 99.9 1.1E-21 3.8E-26 174.9 14.5 128 17-215 23-158 (165)
8 1ril_A Ribonuclease H; hydrola 99.9 2.3E-22 7.8E-27 179.5 7.2 137 16-215 7-150 (166)
9 2lsn_A Reverse transcriptase; 99.9 1.1E-21 3.6E-26 175.1 10.0 140 15-212 5-162 (165)
10 3hst_B Protein RV2228C/MT2287; 99.8 5.4E-19 1.8E-23 151.8 13.5 78 17-94 3-86 (141)
11 3u3g_D Ribonuclease H, RNAse H 99.8 4.1E-19 1.4E-23 151.9 12.5 80 16-95 2-90 (140)
12 1mu2_A HIV-2 RT; HIV-2 reverse 99.8 9.9E-19 3.4E-23 183.1 13.7 123 12-211 431-555 (555)
13 2zd1_A Reverse transcriptase/r 99.8 7E-19 2.4E-23 184.3 10.9 122 12-210 434-557 (557)
14 2ehg_A Ribonuclease HI; RNAse 99.8 5.1E-18 1.7E-22 147.9 13.0 124 18-214 2-135 (149)
15 1zbf_A Ribonuclease H-related 99.5 2.2E-14 7.5E-19 124.7 5.1 84 12-96 6-92 (142)
16 4htu_A Ribonuclease H, RNAse H 99.3 3E-12 1E-16 109.8 6.6 80 15-95 3-85 (134)
17 3u3g_D Ribonuclease H, RNAse H 85.3 0.88 3E-05 37.2 4.5 83 105-212 47-136 (140)
18 3hst_B Protein RV2228C/MT2287; 81.8 1.1 3.8E-05 36.8 3.7 85 105-214 48-134 (141)
19 1rw3_A POL polyprotein; RNA an 80.5 0.34 1.2E-05 48.7 0.0 76 15-94 344-429 (455)
20 2zd1_B P51 RT; P51/P66, hetero 72.1 7.5 0.00026 38.6 7.3 79 15-96 322-409 (428)
21 2ehg_A Ribonuclease HI; RNAse 70.8 3.8 0.00013 34.2 4.1 41 104-144 49-89 (149)
22 2qkb_A Ribonuclease H1, HS-RNA 65.1 2.2 7.6E-05 36.0 1.4 38 104-141 51-88 (154)
23 2z3g_A Blasticidin-S deaminase 60.0 13 0.00044 30.8 5.2 54 29-83 27-80 (130)
24 2fr5_A Cytidine deaminase; tet 57.5 18 0.00063 30.6 5.9 55 28-83 35-91 (146)
25 4htu_A Ribonuclease H, RNAse H 54.2 12 0.00041 31.3 4.1 53 105-158 47-108 (134)
26 1uwz_A Cytidine deaminase; CDD 47.6 41 0.0014 27.9 6.4 53 30-83 25-79 (136)
27 2d30_A Cytidine deaminase; pur 42.6 33 0.0011 28.8 5.1 55 29-84 33-89 (141)
28 1r5t_A Cytidine deaminase; zin 35.3 60 0.0021 27.1 5.6 57 28-84 31-89 (142)
29 3mpz_A Cytidine deaminase; ssg 34.3 49 0.0017 28.2 4.8 54 29-83 46-101 (150)
30 3alr_A Nanos protein; zinc-fin 34.0 19 0.00066 28.7 2.0 28 297-324 72-100 (106)
31 3h08_A RNH (ribonuclease H); R 33.3 9.4 0.00032 31.6 0.1 35 105-141 46-80 (146)
32 2kq2_A Ribonuclease H-related 30.9 24 0.00084 29.3 2.4 30 103-133 50-79 (147)
33 2e4l_A Ribonuclease HI, RNAse 29.9 11 0.00038 31.8 0.0 35 105-141 48-82 (158)
34 1zbf_A Ribonuclease H-related 29.9 20 0.00068 30.1 1.6 77 105-204 53-138 (142)
35 3oj6_A Blasticidin-S deaminase 29.4 61 0.0021 27.8 4.6 52 30-82 52-103 (158)
36 3dmo_A Cytidine deaminase; str 27.2 83 0.0028 26.3 5.0 55 29-83 32-89 (138)
37 1jl1_A Ribonuclease HI; RNAse 26.6 14 0.00047 31.1 0.0 36 105-142 46-81 (155)
38 3r2n_A Cytidine deaminase; str 25.8 85 0.0029 26.2 4.8 54 29-83 31-86 (138)
39 2zd1_A Reverse transcriptase/r 22.5 1.8E+02 0.0062 29.4 7.6 78 15-95 324-410 (557)
40 1ril_A Ribonuclease H; hydrola 21.8 19 0.00064 30.7 -0.1 35 105-141 50-84 (166)
41 2zqe_A MUTS2 protein; alpha/be 20.5 1.2E+02 0.004 22.7 4.3 34 2-37 47-80 (83)
No 1
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.91 E-value=4.3e-24 Score=187.96 Aligned_cols=141 Identities=21% Similarity=0.325 Sum_probs=103.5
Q ss_pred cCCCcEEEEEcCCccCCC-----eEEEEEEecCC-EEEEEecCCCCchhHHhHHHHHHHHHHHHhcCCceEEEEcCCHHH
Q psy5156 13 NYKDFLKIYTDGSKDETG-----VGCALIIPQLN-VTKRFTLNKYSSIFHAELFSILQSLKNAKLLNIKKVLIISDSLSS 86 (389)
Q Consensus 13 ~~~~~~~IyTDGS~~~~~-----~G~avv~~~~~-~~~~~~l~~~~t~~~AEl~AI~~AL~~a~~~~~~~i~I~sDSq~a 86 (389)
++++.+.||||||+..++ +|+|+|+.++. ......+++.+||+.||+.|++.||+.+.+.+..++.|+|||+++
T Consensus 3 ~~~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~v 82 (154)
T 2qkb_A 3 HMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFT 82 (154)
T ss_dssp EETTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHH
T ss_pred CCCCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEECcHHH
Confidence 456789999999997432 79999887542 223345555789999999999999999988778999999999999
Q ss_pred HHHHhcCCCCC---ccccccchhhHHHHHHHhhhHHHhhhhhhhhhcccchhhhhhccCCCCChhHHHHHHHHHhhhhhh
Q psy5156 87 FQAISNLYHPN---PLVKEIPHAELFSILQSLKNAELLNIKKVLIISDSLSSFQAISNLYHPNPLVKEIQETYSSAQISI 163 (389)
Q Consensus 87 l~~l~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 163 (389)
++.|.++...+ ++. .+. +.+..+.+++++|.+++.
T Consensus 83 i~~i~~~~~~w~~~~w~--------------------------------~~~----~~~~~n~~l~~~i~~l~~------ 120 (154)
T 2qkb_A 83 INGITNWVQGWKKNGWK--------------------------------TSA----GKEVINKEDFVALERLTQ------ 120 (154)
T ss_dssp HHHHHTHHHHHHTTTSB--------------------------------CTT----SSBCTTHHHHHHHHHHHT------
T ss_pred HhhhhhhHHHHHhcccc--------------------------------ccC----CCccccHHHHHHHHHHHc------
Confidence 99999853211 100 000 011112234555555442
Q ss_pred hcccCCCCCCcccccccCCCceEEEEEeecCCCCccchHHHHHHhhhcCCC
Q psy5156 164 KFLWCPSHPCWYFWKRSSSQISIKFLWCPSHVGISGNDQADTEAKKATSEP 214 (389)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~i~~~wvp~H~g~~gNe~aD~~Ak~a~~~~ 214 (389)
+..|.|.|||||+|++|||.||+|||+|+..+
T Consensus 121 -------------------~~~v~~~~V~~H~g~~~N~~AD~LA~~a~~~~ 152 (154)
T 2qkb_A 121 -------------------GMDIQWMHVPGHSGFIGNEEADRLAREGAKQS 152 (154)
T ss_dssp -------------------TCEEEEEECCTTSSCHHHHHHHHHHHHHHTCC
T ss_pred -------------------CCceEEEEccCCCCCHhHHHHHHHHHHHHHhc
Confidence 35799999999999999999999999998765
No 2
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.90 E-value=6.8e-24 Score=186.45 Aligned_cols=140 Identities=22% Similarity=0.271 Sum_probs=99.0
Q ss_pred hhcCCCcEEEEEcCCcc--CCCeEEEEEEecCCEEEEEecCCCCchhHHhHHHHHHHHHHHHhcCCceEEEEcCCHHHHH
Q psy5156 11 HENYKDFLKIYTDGSKD--ETGVGCALIIPQLNVTKRFTLNKYSSIFHAELFSILQSLKNAKLLNIKKVLIISDSLSSFQ 88 (389)
Q Consensus 11 ~~~~~~~~~IyTDGS~~--~~~~G~avv~~~~~~~~~~~l~~~~t~~~AEl~AI~~AL~~a~~~~~~~i~I~sDSq~al~ 88 (389)
.+++++.+.||||||+. ++..|+|+++.++.. ....+ +.+||++||+.|++.||+.+ ..++.|+|||+++++
T Consensus 6 ~~P~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~-~~~~~-~~~Tnn~aEl~A~i~AL~~~----~~~v~i~tDS~~v~~ 79 (150)
T 3qio_A 6 KEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQ-KVVTL-TDTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALG 79 (150)
T ss_dssp SSCCTTCEEEEEEEEECTTTCCEEEEEEETTSCE-EEEEE-SSCCHHHHHHHHHHHHHHHS----CSEEEEEESCHHHHH
T ss_pred cCCCCCCEEEEEccCCCCCCCCeEEEEEEEcCCE-EEEeC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeCcHHHHH
Confidence 45677899999999987 355788888876543 22333 57899999999999999985 489999999999999
Q ss_pred HHhcCCCCCccccccchhhHHHHHHHhhhHHHhhhhhhhhhcccchhhhhhccCCCCChhHHHHHHHHHhhhhhhhcccC
Q psy5156 89 AISNLYHPNPLVKEIPHAELFSILQSLKNAELLNIKKVLIISDSLSSFQAISNLYHPNPLVKEIQETYSSAQISIKFLWC 168 (389)
Q Consensus 89 ~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 168 (389)
+|+++...+.. ..++ .+. +.+..+.++++++.+.+.
T Consensus 80 ~i~~w~~~W~~-------------~gw~----------------~~~----g~~v~n~~l~~~l~~~l~----------- 115 (150)
T 3qio_A 80 IITQWIHNWKK-------------RGWK----------------TAD----KKPVKNVDLVNQIIEQLI----------- 115 (150)
T ss_dssp HHHHHHHHHCC---------------------------------------------CHHHHHHHHHHHT-----------
T ss_pred HHHHHHHHHhh-------------cCcC----------------cCc----CcccccHHHHHHHHHHHh-----------
Confidence 99986432110 0000 001 112222345555444332
Q ss_pred CCCCCcccccccCCCceEEEEEeecCCCCccchHHHHHHhhhcCC
Q psy5156 169 PSHPCWYFWKRSSSQISIKFLWCPSHVGISGNDQADTEAKKATSE 213 (389)
Q Consensus 169 ~~~~~~~~~~~~~~~~~i~~~wvp~H~g~~gNe~aD~~Ak~a~~~ 213 (389)
...+|.|.|||||+|++|||.||+||++|+..
T Consensus 116 -------------~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 116 -------------KKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp -------------TCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred -------------hcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 24589999999999999999999999999875
No 3
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.89 E-value=6e-24 Score=185.17 Aligned_cols=136 Identities=21% Similarity=0.174 Sum_probs=98.0
Q ss_pred CCcEEEEEcCCccC--CCeEEEEEEecCCEEE-EEecCCCCchhHHhHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHh
Q psy5156 15 KDFLKIYTDGSKDE--TGVGCALIIPQLNVTK-RFTLNKYSSIFHAELFSILQSLKNAKLLNIKKVLIISDSLSSFQAIS 91 (389)
Q Consensus 15 ~~~~~IyTDGS~~~--~~~G~avv~~~~~~~~-~~~l~~~~t~~~AEl~AI~~AL~~a~~~~~~~i~I~sDSq~al~~l~ 91 (389)
.+.+.||||||+.. +.+|+|+++..++... ..+..+.+||+.||+.|++.||+.+.+ ..++.|+|||+++++.|.
T Consensus 2 ~~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~~~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~ 79 (146)
T 3h08_A 2 EKTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYDPATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNAMN 79 (146)
T ss_dssp CCEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHHHH
T ss_pred CceEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCCCCCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHHHH
Confidence 45799999999884 4589999887654322 222224689999999999999999875 689999999999999998
Q ss_pred c-CCCC---CccccccchhhHHHHHHHhhhHHHhhhhhhhhhcccchhhhhhccCCCCChhHHHHHHHHHhhhhhhhccc
Q psy5156 92 N-LYHP---NPLVKEIPHAELFSILQSLKNAELLNIKKVLIISDSLSSFQAISNLYHPNPLVKEIQETYSSAQISIKFLW 167 (389)
Q Consensus 92 ~-~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 167 (389)
+ +... +++. .+. +.+..+.+++++|.+++..
T Consensus 80 ~~w~~~W~~~~w~--------------------------------~~~----~~~v~n~~l~~~~~~~~~~--------- 114 (146)
T 3h08_A 80 EGWLKRWVKNGWK--------------------------------TAA----KKPVENIDLWQEILKLTTL--------- 114 (146)
T ss_dssp SSHHHHHHHTTCC----------------------------------------CCCTTHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHCCCc--------------------------------cCC----CCCcCCHHHHHHHHHHHhh---------
Confidence 8 3211 1100 000 1122223466666666543
Q ss_pred CCCCCCcccccccCCCceEEEEEeecCCCCccchHHHHHHhhhcCC
Q psy5156 168 CPSHPCWYFWKRSSSQISIKFLWCPSHVGISGNDQADTEAKKATSE 213 (389)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~i~~~wvp~H~g~~gNe~aD~~Ak~a~~~ 213 (389)
.+|+|.|||||+|++|||.||+|||+|+..
T Consensus 115 ----------------~~v~~~~V~gH~g~~~N~~AD~LA~~a~~~ 144 (146)
T 3h08_A 115 ----------------HRVTFHKVKGHSDNPYNSRADELARLAIKE 144 (146)
T ss_dssp ----------------SEEEEEECCC-CCSHHHHHHHHHHHHHHHH
T ss_pred ----------------CceEEEEcCCcCCcHhHHHHHHHHHHHHHh
Confidence 379999999999999999999999999754
No 4
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.88 E-value=6.6e-23 Score=180.81 Aligned_cols=141 Identities=22% Similarity=0.243 Sum_probs=98.7
Q ss_pred CcEEEEEcCCccC--CCeEEEEEEecCCEEEEE-ecCCCCchhHHhHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHhc
Q psy5156 16 DFLKIYTDGSKDE--TGVGCALIIPQLNVTKRF-TLNKYSSIFHAELFSILQSLKNAKLLNIKKVLIISDSLSSFQAISN 92 (389)
Q Consensus 16 ~~~~IyTDGS~~~--~~~G~avv~~~~~~~~~~-~l~~~~t~~~AEl~AI~~AL~~a~~~~~~~i~I~sDSq~al~~l~~ 92 (389)
..+.||||||+.. +.+|+|+|+...+....+ +..+.+||+.||+.|++.||+.+.+ ..++.|+|||+++++.|.+
T Consensus 3 ~~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~~~~tn~~aEl~A~~~aL~~~~~--~~~v~I~tDS~~vi~~i~~ 80 (155)
T 1jl1_A 3 KQVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE--HAEVILSTDSQYVRQGITQ 80 (155)
T ss_dssp CCEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTCCS--CCEEEEEECCHHHHHHHHT
T ss_pred ceEEEEEccccCCCCCceEEEEEEEECCeEEEEecCCCCCcHHHHHHHHHHHHHHHhCc--CCcEEEEeCHHHHHHHHHH
Confidence 3689999999984 457899888754432211 1124679999999999999999875 4799999999999999998
Q ss_pred CCCCCccccccchhhHHHHHHHhhhHHHhhhhhhhhhcccchhhhhhccCCCCChhHHHHHHHHHhhhhhhhcccCCCCC
Q psy5156 93 LYHPNPLVKEIPHAELFSILQSLKNAELLNIKKVLIISDSLSSFQAISNLYHPNPLVKEIQETYSSAQISIKFLWCPSHP 172 (389)
Q Consensus 93 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 172 (389)
|...+.. +. ...+. +.+..+.+++++|.+++.
T Consensus 81 w~~~W~~-------------n~----------------~~~~~----g~~v~n~~l~~~i~~l~~--------------- 112 (155)
T 1jl1_A 81 WIHNWKK-------------RG----------------WKTAD----KKPVKNVDLWQRLDAALG--------------- 112 (155)
T ss_dssp THHHHHH-------------TT----------------TBCTT----SCBCTTHHHHHHHHHHTT---------------
T ss_pred HHHHHhh-------------cc----------------ccccc----CCccCCHHHHHHHHHHHc---------------
Confidence 5332100 00 00000 111222345555544432
Q ss_pred CcccccccCCCceEEEEEeecCCCCccchHHHHHHhhhcCCCCC
Q psy5156 173 CWYFWKRSSSQISIKFLWCPSHVGISGNDQADTEAKKATSEPIT 216 (389)
Q Consensus 173 ~~~~~~~~~~~~~i~~~wvp~H~g~~gNe~aD~~Ak~a~~~~~~ 216 (389)
+..|.|.|||||+|++|||.||+|||+|+..+..
T Consensus 113 ----------~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~ 146 (155)
T 1jl1_A 113 ----------QHQIKWEWVKGHAGHPENERADELARAAAMNPTL 146 (155)
T ss_dssp ----------TCEEEEEECCSSTTCHHHHHHHHHHHHHHHSCCB
T ss_pred ----------cCceEEEEcCCCCCCHHHHHHHHHHHHHHhccch
Confidence 2489999999999999999999999999988743
No 5
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.88 E-value=9.8e-23 Score=180.31 Aligned_cols=138 Identities=22% Similarity=0.226 Sum_probs=97.2
Q ss_pred CcEEEEEcCCccC--CCeEEEEEEecCCEEEE-EecCCCCchhHHhHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHhc
Q psy5156 16 DFLKIYTDGSKDE--TGVGCALIIPQLNVTKR-FTLNKYSSIFHAELFSILQSLKNAKLLNIKKVLIISDSLSSFQAISN 92 (389)
Q Consensus 16 ~~~~IyTDGS~~~--~~~G~avv~~~~~~~~~-~~l~~~~t~~~AEl~AI~~AL~~a~~~~~~~i~I~sDSq~al~~l~~ 92 (389)
..+.||||||+.. +.+|+|+|+..++.... .+..+.+||+.||+.|++.||+.+.+ ..++.|+|||+++++.|.+
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~~~~tn~~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~~ 82 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGFSLTTNNRMELLAPIVALEALKE--PCKIILTSDSQYMRQGIMT 82 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTCSS--CCEEEEEECCHHHHHHHHT
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCcCCCccHHHHHHHHHHHHHHhcc--CCeEEEEeCHHHHHHHHHH
Confidence 4699999999973 45799988865443221 12123679999999999999998864 3899999999999999998
Q ss_pred CCCCCccccccchhhHHHHHHHhhhHHHhhhhhhhhhcccchhhhhhccCCCCChhHHHHHHHHHhhhhhhhcccCCCCC
Q psy5156 93 LYHPNPLVKEIPHAELFSILQSLKNAELLNIKKVLIISDSLSSFQAISNLYHPNPLVKEIQETYSSAQISIKFLWCPSHP 172 (389)
Q Consensus 93 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 172 (389)
|...+-. +.+ ..+. +.+..+.++++.|.+++.
T Consensus 83 w~~~W~~-------------n~~----------------~~~~----g~~v~n~~l~~~i~~l~~--------------- 114 (158)
T 2e4l_A 83 WIHGWKK-------------KGW----------------MTSN----RTPVKNVDLWKRLDKAAQ--------------- 114 (158)
T ss_dssp HHHHHHH-------------TTT----------------BCTT----SSBCTTHHHHHHHHHHHT---------------
T ss_pred HHHHHHH-------------ccc----------------cccC----CCcccCHHHHHHHHHHHc---------------
Confidence 4322100 000 0000 111122245555555543
Q ss_pred CcccccccCCCceEEEEEeecCCCCccchHHHHHHhhhcCC
Q psy5156 173 CWYFWKRSSSQISIKFLWCPSHVGISGNDQADTEAKKATSE 213 (389)
Q Consensus 173 ~~~~~~~~~~~~~i~~~wvp~H~g~~gNe~aD~~Ak~a~~~ 213 (389)
+..|.|.|||||+|++|||.||+|||+|+..
T Consensus 115 ----------~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 115 ----------LHQIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp ----------TSEEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred ----------cCcEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 2489999999999999999999999999987
No 6
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.88 E-value=6.1e-23 Score=179.59 Aligned_cols=132 Identities=17% Similarity=0.107 Sum_probs=96.2
Q ss_pred CCCcEEEEEcCCccCCCeEEEEEEecCCEEE--EE-ec--CC--CCchhHHhHHHHHHHHHHHHhcCCceEEEEcCCHHH
Q psy5156 14 YKDFLKIYTDGSKDETGVGCALIIPQLNVTK--RF-TL--NK--YSSIFHAELFSILQSLKNAKLLNIKKVLIISDSLSS 86 (389)
Q Consensus 14 ~~~~~~IyTDGS~~~~~~G~avv~~~~~~~~--~~-~l--~~--~~t~~~AEl~AI~~AL~~a~~~~~~~i~I~sDSq~a 86 (389)
+++.+.||||||+.++.+|+|+|+..++... .. +. +. .+||++||+.|++.||+.+.+.+. +|.|+|||+.+
T Consensus 3 ~~~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS~~i 81 (147)
T 2kq2_A 3 DRTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHDYAGI 81 (147)
T ss_dssp TTSCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCCSTH
T ss_pred CCCeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEECcHHH
Confidence 4678999999999998899999987544322 22 22 22 369999999999999999887766 99999999988
Q ss_pred HHHHhcCCCCCccccccchhhHHHHHHHhhhHHHhhhhhhhhhcccchhhhhhccCCCCChhHHHHHHHHHhhhhhhhcc
Q psy5156 87 FQAISNLYHPNPLVKEIPHAELFSILQSLKNAELLNIKKVLIISDSLSSFQAISNLYHPNPLVKEIQETYSSAQISIKFL 166 (389)
Q Consensus 87 l~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 166 (389)
.+.+.+.+..+. +......+++..
T Consensus 82 ~~w~~~~w~~~~------------------------------------------------~~~~~~~~l~~~-------- 105 (147)
T 2kq2_A 82 AFWATGEWKAKN------------------------------------------------EFTQAYAKLMNQ-------- 105 (147)
T ss_dssp HHHTTSSSSCCH------------------------------------------------HHHHHHHCGGGG--------
T ss_pred HHHHhCCCccCC------------------------------------------------cchHHHHHHHHH--------
Confidence 776665433221 000111122221
Q ss_pred cCCCCCCcccccccCCCceEEEEEeecCCCCccchHHHHHHhhhcCCCCCC
Q psy5156 167 WCPSHPCWYFWKRSSSQISIKFLWCPSHVGISGNDQADTEAKKATSEPITN 217 (389)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~i~~~wvp~H~g~~gNe~aD~~Ak~a~~~~~~~ 217 (389)
+.. .|.|.|||||+|++|||.||+|||+|+..+...
T Consensus 106 ------------l~~---~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~~ 141 (147)
T 2kq2_A 106 ------------YRG---IYSFEKVKAHSGNEFNDYVDMKAKSALGIRDLE 141 (147)
T ss_dssp ------------GST---TCCBCCCCCCCCCHHHHHHHHHHHHHHTCCCTT
T ss_pred ------------hcC---CeeEEEecCcCCCcchHHHHHHHHHHHhccccc
Confidence 111 799999999999999999999999999887443
No 7
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.87 E-value=1.1e-21 Score=174.94 Aligned_cols=128 Identities=27% Similarity=0.283 Sum_probs=93.9
Q ss_pred cEEEEEcCCcc--CCCeEEEEEEecC-CEEEEEecCCCCchhHHhHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHhcC
Q psy5156 17 FLKIYTDGSKD--ETGVGCALIIPQL-NVTKRFTLNKYSSIFHAELFSILQSLKNAKLLNIKKVLIISDSLSSFQAISNL 93 (389)
Q Consensus 17 ~~~IyTDGS~~--~~~~G~avv~~~~-~~~~~~~l~~~~t~~~AEl~AI~~AL~~a~~~~~~~i~I~sDSq~al~~l~~~ 93 (389)
.+.||||||+. +|..|+|+++..+ ......+....+||++||+.|++.||+.+ ...++.|+|||+++++.+ |
T Consensus 23 ~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~---~~~~v~I~tDS~~vi~~i--w 97 (165)
T 3p1g_A 23 DYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA---EGKKLNVYTDSRYAFATA--H 97 (165)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT---BTSEEEEEECCHHHHHHH--H
T ss_pred CEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc---cCceEEEEEchHHHHhhh--h
Confidence 49999999997 5667888877543 33333355678899999999999999998 268999999999999998 3
Q ss_pred CCCCccccccchhhHHHHHHHhhhHHHhhhhhhhhhcccchhhhhhccCCCCChhHHHHHHHHHhhhhhhhcccCCCCCC
Q psy5156 94 YHPNPLVKEIPHAELFSILQSLKNAELLNIKKVLIISDSLSSFQAISNLYHPNPLVKEIQETYSSAQISIKFLWCPSHPC 173 (389)
Q Consensus 94 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 173 (389)
....+ +.+ + +.++ +++++...
T Consensus 98 ~~~~g--~~v------------------------------------~----n~dl---~~~l~~~l-------------- 118 (165)
T 3p1g_A 98 VHSEG--REI------------------------------------K----NKNE---ILALLKAL-------------- 118 (165)
T ss_dssp SCCCS--CCC------------------------------------S----SHHH---HHHHHHHT--------------
T ss_pred cccCC--Ccc------------------------------------c----CHHH---HHHHHHHH--------------
Confidence 22111 011 0 1122 33343321
Q ss_pred cccccccCCCceEEEEEeecCCC-----CccchHHHHHHhhhcCCCC
Q psy5156 174 WYFWKRSSSQISIKFLWCPSHVG-----ISGNDQADTEAKKATSEPI 215 (389)
Q Consensus 174 ~~~~~~~~~~~~i~~~wvp~H~g-----~~gNe~aD~~Ak~a~~~~~ 215 (389)
..+.+|+|.|||||+| ++|||.||+|||+|+..+.
T Consensus 119 -------~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~~ 158 (165)
T 3p1g_A 119 -------FLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAV 158 (165)
T ss_dssp -------TSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------hcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcCC
Confidence 1356999999999999 9999999999999997653
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.86 E-value=2.3e-22 Score=179.45 Aligned_cols=137 Identities=16% Similarity=0.137 Sum_probs=97.2
Q ss_pred CcEEEEEcCCccC--CCeEEEEEEecCCEE-EEEecCCCCchhHHhHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHhc
Q psy5156 16 DFLKIYTDGSKDE--TGVGCALIIPQLNVT-KRFTLNKYSSIFHAELFSILQSLKNAKLLNIKKVLIISDSLSSFQAISN 92 (389)
Q Consensus 16 ~~~~IyTDGS~~~--~~~G~avv~~~~~~~-~~~~l~~~~t~~~AEl~AI~~AL~~a~~~~~~~i~I~sDSq~al~~l~~ 92 (389)
..+.||||||+.. +.+|+|+|+...+.. ...+....+||+.||+.|++.||+.+.+ ..+|.|+|||+++++.|.+
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~--~~~v~I~tDS~~vi~~i~~ 84 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKE--PCEVDLYTDSHYLKKAFTE 84 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEEEEECHHHHHHHHHHHHHHSCCS--CCEEEEECCCHHHHHHHHS
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHhcc--CCeEEEEeChHHHHHHHhh
Confidence 5789999999984 457899988643321 1111124679999999999999998865 3589999999999999998
Q ss_pred -CCCC---CccccccchhhHHHHHHHhhhHHHhhhhhhhhhcccchhhhhhccCCCCChhHHHHHHHHHhhhhhhhcccC
Q psy5156 93 -LYHP---NPLVKEIPHAELFSILQSLKNAELLNIKKVLIISDSLSSFQAISNLYHPNPLVKEIQETYSSAQISIKFLWC 168 (389)
Q Consensus 93 -~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 168 (389)
|... +++. .+. +.+..+.+++++|.+++.
T Consensus 85 ~w~~~W~~~~w~--------------------------------~~~----g~~v~n~~l~~~i~~l~~----------- 117 (166)
T 1ril_A 85 GWLEGWRKRGWR--------------------------------TAE----GKPVKNRDLWEALLLAMA----------- 117 (166)
T ss_dssp SHHHHHHHTTSB--------------------------------CTT----SSBCTTHHHHHHHHHHHT-----------
T ss_pred hHHHHHHhcccc--------------------------------ccc----CCccCcHHHHHHHHHHHh-----------
Confidence 3221 0100 000 011112245555555543
Q ss_pred CCCCCcccccccCCCceEEEEEeecCCCCccchHHHHHHhhhcCCCC
Q psy5156 169 PSHPCWYFWKRSSSQISIKFLWCPSHVGISGNDQADTEAKKATSEPI 215 (389)
Q Consensus 169 ~~~~~~~~~~~~~~~~~i~~~wvp~H~g~~gNe~aD~~Ak~a~~~~~ 215 (389)
+..|.|.|||||+|++||+.||+|||+|+....
T Consensus 118 --------------~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~~ 150 (166)
T 1ril_A 118 --------------PHRVRFHFVKGHTGHPENERVDREARRQAQSQA 150 (166)
T ss_dssp --------------TSEEECCCCCGGGSCTHHHHHHHHHHHHHTSSC
T ss_pred --------------cCeEEEEEeeCCCCchhHHHHHHHHHHHHHHhh
Confidence 248999999999999999999999999998764
No 9
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.85 E-value=1.1e-21 Score=175.08 Aligned_cols=140 Identities=19% Similarity=0.135 Sum_probs=98.2
Q ss_pred CCcEEEEEcCCcc--CCC-----eEEEEEEecC----CEEEEEec-CCCCchhHHhHHHHHHHHHHHHhcCCceEEEEcC
Q psy5156 15 KDFLKIYTDGSKD--ETG-----VGCALIIPQL----NVTKRFTL-NKYSSIFHAELFSILQSLKNAKLLNIKKVLIISD 82 (389)
Q Consensus 15 ~~~~~IyTDGS~~--~~~-----~G~avv~~~~----~~~~~~~l-~~~~t~~~AEl~AI~~AL~~a~~~~~~~i~I~sD 82 (389)
...++||||||+. +++ +|+|+|+... .+...+.. ....+++.||+.|+..||+.+++. ..+|.|+||
T Consensus 5 ~~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~-~~~v~I~TD 83 (165)
T 2lsn_A 5 QYEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKI-PGPVLVITD 83 (165)
T ss_dssp CCSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHS-SSCEEEEES
T ss_pred CceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcC-CCeEEEEeC
Confidence 4568999999997 333 7999988532 23333333 356788889999999888887764 357999999
Q ss_pred CHHHHHHHhcCCCCCccccccchhhHHHHHHHhhhHHHhhhhhhhhhcccchhhhhhccCCCCChhHHHHHHHHHhhhhh
Q psy5156 83 SLSSFQAISNLYHPNPLVKEIPHAELFSILQSLKNAELLNIKKVLIISDSLSSFQAISNLYHPNPLVKEIQETYSSAQIS 162 (389)
Q Consensus 83 Sq~al~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 162 (389)
|++++++|+.|...+.. +.+ ..+. +.+..+.+|++++.+++...
T Consensus 84 S~Yvi~~it~w~~~Wk~-------------ngw----------------~~~~----~~pVkN~dL~~~l~~~~~~~--- 127 (165)
T 2lsn_A 84 SFYVAESANKELPYWKS-------------NGF----------------VNNK----KKPLKHISKWKSIAECLSMK--- 127 (165)
T ss_dssp CHHHHHHHHTHHHHHHH-------------TTS----------------CSCS----SSCCSSHHHHHHHHHHHHHC---
T ss_pred hHHHHhhhhhhhhhhee-------------ccc----------------cccC----CCcccCHHHHHHHHHHHhCC---
Confidence 99999999876432100 000 0011 22333456777777766543
Q ss_pred hhcccCCCCCCcccccccCCCceEEEEEeecCCCC------ccchHHHHHHhhhcC
Q psy5156 163 IKFLWCPSHPCWYFWKRSSSQISIKFLWCPSHVGI------SGNDQADTEAKKATS 212 (389)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~i~~~wvp~H~g~------~gNe~aD~~Ak~a~~ 212 (389)
.+|+|.|||||+|+ +|||.||+||++|+.
T Consensus 128 ---------------------~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA~ 162 (165)
T 2lsn_A 128 ---------------------PDITIQHEKGHQPTNTSIHTEGNALADKLATQGSY 162 (165)
T ss_dssp ---------------------TTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------CCEEEEEEeCCCCccCCCCChHHHHHHHHHHHhhh
Confidence 37999999999995 589999999999873
No 10
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.80 E-value=5.4e-19 Score=151.84 Aligned_cols=78 Identities=17% Similarity=0.137 Sum_probs=63.4
Q ss_pred cEEEEEcCCccC--CCeEEEEEEecC---CEEE-EEecCCCCchhHHhHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHH
Q psy5156 17 FLKIYTDGSKDE--TGVGCALIIPQL---NVTK-RFTLNKYSSIFHAELFSILQSLKNAKLLNIKKVLIISDSLSSFQAI 90 (389)
Q Consensus 17 ~~~IyTDGS~~~--~~~G~avv~~~~---~~~~-~~~l~~~~t~~~AEl~AI~~AL~~a~~~~~~~i~I~sDSq~al~~l 90 (389)
.+.||||||+.. +.+|+|+++.+. .... .....+.+||+.||+.|++.||+.+.+.+.+++.|+|||+++++.+
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~i 82 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQM 82 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccCCCCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHHH
Confidence 589999999884 468999888653 2222 2222247899999999999999999988889999999999999999
Q ss_pred hcCC
Q psy5156 91 SNLY 94 (389)
Q Consensus 91 ~~~~ 94 (389)
++.+
T Consensus 83 ~~~~ 86 (141)
T 3hst_B 83 SGRW 86 (141)
T ss_dssp TTSS
T ss_pred hCCc
Confidence 9854
No 11
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.79 E-value=4.1e-19 Score=151.92 Aligned_cols=80 Identities=20% Similarity=0.262 Sum_probs=63.7
Q ss_pred CcEEEEEcCCccC--CCeEEEEEEec--CCEE-EEEecCCCCchhHHhHHHHHHHHHHHHhcCCc----eEEEEcCCHHH
Q psy5156 16 DFLKIYTDGSKDE--TGVGCALIIPQ--LNVT-KRFTLNKYSSIFHAELFSILQSLKNAKLLNIK----KVLIISDSLSS 86 (389)
Q Consensus 16 ~~~~IyTDGS~~~--~~~G~avv~~~--~~~~-~~~~l~~~~t~~~AEl~AI~~AL~~a~~~~~~----~i~I~sDSq~a 86 (389)
..+.||||||+.. +.+|+|+++.+ +... ...+..+.+||+.||+.|++.||+.+.+.+.+ ++.|+|||+++
T Consensus 2 ~~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~v 81 (140)
T 3u3g_D 2 NKIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYIGETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSELI 81 (140)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEEEEECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHHH
T ss_pred ceEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeCCCCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHHH
Confidence 3689999999973 46899998865 3332 22222235799999999999999999887667 99999999999
Q ss_pred HHHHhcCCC
Q psy5156 87 FQAISNLYH 95 (389)
Q Consensus 87 l~~l~~~~~ 95 (389)
++.+++++.
T Consensus 82 i~~i~~~~~ 90 (140)
T 3u3g_D 82 VRQMQGVYK 90 (140)
T ss_dssp HHHHTTSSC
T ss_pred HHHhCCCcc
Confidence 999998754
No 12
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.78 E-value=9.9e-19 Score=183.08 Aligned_cols=123 Identities=22% Similarity=0.254 Sum_probs=93.4
Q ss_pred hcCCCcEEEEEcCCccC--CCeEEEEEEecCCEEEEEecCCCCchhHHhHHHHHHHHHHHHhcCCceEEEEcCCHHHHHH
Q psy5156 12 ENYKDFLKIYTDGSKDE--TGVGCALIIPQLNVTKRFTLNKYSSIFHAELFSILQSLKNAKLLNIKKVLIISDSLSSFQA 89 (389)
Q Consensus 12 ~~~~~~~~IyTDGS~~~--~~~G~avv~~~~~~~~~~~l~~~~t~~~AEl~AI~~AL~~a~~~~~~~i~I~sDSq~al~~ 89 (389)
+..++.+.||||||+.. +..|+|+++..++.. ... ...+||+.||+.|++.||+. +..++.|+|||++|+++
T Consensus 431 ~p~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~-~~~-~~~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~v~~~ 504 (555)
T 1mu2_A 431 DPIPGAETFYTDGSCNRQSKEGKAGYVTDRGKDK-VKK-LEQTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGI 504 (555)
T ss_dssp SCCTTCEEEEEEEEECTTTCCEEEEEEETTSCEE-EEE-ESSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHH
T ss_pred CCCCCceEEEEcccccCCCCCceEEEEEEeCCEe-ecc-CCCCCHHHHHHHHHHHHHHc----CCCeEEEEEehHHHHHH
Confidence 34467799999999984 447888888755422 222 24789999999999999997 56899999999999999
Q ss_pred HhcCCCCCccccccchhhHHHHHHHhhhHHHhhhhhhhhhcccchhhhhhccCCCCChhHHHHHHHHHhhhhhhhcccCC
Q psy5156 90 ISNLYHPNPLVKEIPHAELFSILQSLKNAELLNIKKVLIISDSLSSFQAISNLYHPNPLVKEIQETYSSAQISIKFLWCP 169 (389)
Q Consensus 90 l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (389)
++++..... .++++++.+.+..
T Consensus 505 i~~~~~~~~-----------------------------------------------~~l~~~~~~~~~~----------- 526 (555)
T 1mu2_A 505 VASQPTESE-----------------------------------------------SKIVNQIIEEMIK----------- 526 (555)
T ss_dssp HHTCCSEES-----------------------------------------------CHHHHHHHHHHHH-----------
T ss_pred Hhccccccc-----------------------------------------------HHHHHHHHHHhcc-----------
Confidence 998543211 1233333333322
Q ss_pred CCCCcccccccCCCceEEEEEeecCCCCccchHHHHHHhhhc
Q psy5156 170 SHPCWYFWKRSSSQISIKFLWCPSHVGISGNDQADTEAKKAT 211 (389)
Q Consensus 170 ~~~~~~~~~~~~~~~~i~~~wvp~H~g~~gNe~aD~~Ak~a~ 211 (389)
+..|.|.|||||+|++|||.||+|||+|+
T Consensus 527 -------------~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 527 -------------KEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp -------------CSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred -------------CCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 35899999999999999999999999985
No 13
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.77 E-value=7e-19 Score=184.30 Aligned_cols=122 Identities=23% Similarity=0.299 Sum_probs=89.7
Q ss_pred hcCCCcEEEEEcCCccC--CCeEEEEEEecCCEEEEEecCCCCchhHHhHHHHHHHHHHHHhcCCceEEEEcCCHHHHHH
Q psy5156 12 ENYKDFLKIYTDGSKDE--TGVGCALIIPQLNVTKRFTLNKYSSIFHAELFSILQSLKNAKLLNIKKVLIISDSLSSFQA 89 (389)
Q Consensus 12 ~~~~~~~~IyTDGS~~~--~~~G~avv~~~~~~~~~~~l~~~~t~~~AEl~AI~~AL~~a~~~~~~~i~I~sDSq~al~~ 89 (389)
+...+.+.||||||+.. +.+|+|+++.++.. ...+. ..+||++||+.|++.||+.+ ..++.|+|||++|+++
T Consensus 434 ep~~~~~~iytDGs~~~n~g~~g~g~v~~~~~~-~~~~~-~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~vi~~ 507 (557)
T 2zd1_A 434 EPIVGAETFYVDGAANRETKLGKAGYVTNKGRQ-KVVPL-TNTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGI 507 (557)
T ss_dssp SCCTTSCEEEEEEEECTTTCCEEEEEEETTSCE-EEEEE-CSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHHHHHH
T ss_pred CCCCCCEEEEEccCCCCCCCceEEEEEEECCcE-EEecC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHHHHHH
Confidence 34557799999999873 44788888875442 22233 47899999999999999998 5799999999999999
Q ss_pred HhcCCCCCccccccchhhHHHHHHHhhhHHHhhhhhhhhhcccchhhhhhccCCCCChhHHHHHHHHHhhhhhhhcccCC
Q psy5156 90 ISNLYHPNPLVKEIPHAELFSILQSLKNAELLNIKKVLIISDSLSSFQAISNLYHPNPLVKEIQETYSSAQISIKFLWCP 169 (389)
Q Consensus 90 l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (389)
++++...+. .++++++.+.+..
T Consensus 508 i~~~~~~~~-----------------------------------------------~~l~~~~~~~l~~----------- 529 (557)
T 2zd1_A 508 IQAQPDKSE-----------------------------------------------SELVNQIIEQLIK----------- 529 (557)
T ss_dssp HTTCCSEES-----------------------------------------------SHHHHHHHHHHHH-----------
T ss_pred HhcCCccCC-----------------------------------------------HHHHHHHHHHHhc-----------
Confidence 998654311 1223333322222
Q ss_pred CCCCcccccccCCCceEEEEEeecCCCCccchHHHHHHhhh
Q psy5156 170 SHPCWYFWKRSSSQISIKFLWCPSHVGISGNDQADTEAKKA 210 (389)
Q Consensus 170 ~~~~~~~~~~~~~~~~i~~~wvp~H~g~~gNe~aD~~Ak~a 210 (389)
...|.|.|||||+|++|||.||+|||+|
T Consensus 530 -------------~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 530 -------------KEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp -------------CSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred -------------CCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 2389999999999999999999999986
No 14
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.76 E-value=5.1e-18 Score=147.86 Aligned_cols=124 Identities=19% Similarity=0.227 Sum_probs=93.3
Q ss_pred EEEEEcCCcc---CCCeEE-EEEEecC-CEEEEEe--cC---CCCchhHHhHHHHHHHHHHHHhcCCceEEEEcCCHHHH
Q psy5156 18 LKIYTDGSKD---ETGVGC-ALIIPQL-NVTKRFT--LN---KYSSIFHAELFSILQSLKNAKLLNIKKVLIISDSLSSF 87 (389)
Q Consensus 18 ~~IyTDGS~~---~~~~G~-avv~~~~-~~~~~~~--l~---~~~t~~~AEl~AI~~AL~~a~~~~~~~i~I~sDSq~al 87 (389)
+.||||||+. ++++|+ |+++.+. .....++ .+ ..+||+.||+.|++.||+.+.+.+..++.|+|||++++
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~vi 81 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLVI 81 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHHHH
T ss_pred EEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHHHH
Confidence 6799999987 266885 8887653 3322222 22 37899999999999999999988888999999999999
Q ss_pred HHHhcCCCCCccccccchhhHHHHHHHhhhHHHhhhhhhhhhcccchhhhhhccCCCCChhHHHHHHHHHhhhhhhhccc
Q psy5156 88 QAISNLYHPNPLVKEIPHAELFSILQSLKNAELLNIKKVLIISDSLSSFQAISNLYHPNPLVKEIQETYSSAQISIKFLW 167 (389)
Q Consensus 88 ~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 167 (389)
+.+++++..+.. .+ .+++++++++++..
T Consensus 82 ~~i~~~w~~~~~-------~~-------------------------------------~~l~~~i~~l~~~~-------- 109 (149)
T 2ehg_A 82 KQMNGEYKVKAK-------RI-------------------------------------IPLYEKAIELKKKL-------- 109 (149)
T ss_dssp HHHTTSSCCCCT-------TH-------------------------------------HHHHHHHHHHHHHH--------
T ss_pred HHHhCccccCCH-------HH-------------------------------------HHHHHHHHHHHhcC--------
Confidence 999998553210 00 12344555555432
Q ss_pred CCCCCCcccccccCCCceEEEEEeecCCCCccchHHHHHHhhhcCCC
Q psy5156 168 CPSHPCWYFWKRSSSQISIKFLWCPSHVGISGNDQADTEAKKATSEP 214 (389)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~i~~~wvp~H~g~~gNe~aD~~Ak~a~~~~ 214 (389)
.|.|.|||+| +|+.||+|||+|+..+
T Consensus 110 -----------------~v~~~~V~~~----~N~~AD~LA~~a~~~~ 135 (149)
T 2ehg_A 110 -----------------NATLIWVPRE----ENKEADRLSRVAYELV 135 (149)
T ss_dssp -----------------TCEEEECCGG----GCHHHHHHHHHHHHHH
T ss_pred -----------------CEEEEEcCCc----ccHHHHHHHHHHHHhh
Confidence 5999999995 9999999999998654
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.47 E-value=2.2e-14 Score=124.66 Aligned_cols=84 Identities=13% Similarity=0.013 Sum_probs=64.7
Q ss_pred hcCCCcEEEEEcCCcc--CCCeEEEEEEecCC-EEEEEecCCCCchhHHhHHHHHHHHHHHHhcCCceEEEEcCCHHHHH
Q psy5156 12 ENYKDFLKIYTDGSKD--ETGVGCALIIPQLN-VTKRFTLNKYSSIFHAELFSILQSLKNAKLLNIKKVLIISDSLSSFQ 88 (389)
Q Consensus 12 ~~~~~~~~IyTDGS~~--~~~~G~avv~~~~~-~~~~~~l~~~~t~~~AEl~AI~~AL~~a~~~~~~~i~I~sDSq~al~ 88 (389)
...++.+.||||||+. ++.+|+|+|+...+ .....+....+||+.||++|++.||+.+.+.+. ++.|+|||++|++
T Consensus 6 ~~~~~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~~~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~vi~ 84 (142)
T 1zbf_A 6 KEEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIK 84 (142)
T ss_dssp --CCCSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEEEECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHH
T ss_pred CCCCCeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEecccCCcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHHHHH
Confidence 3456788999999997 45689999986333 322222123679999999999999999998666 9999999999999
Q ss_pred HHhcCCCC
Q psy5156 89 AISNLYHP 96 (389)
Q Consensus 89 ~l~~~~~~ 96 (389)
.+.+.+..
T Consensus 85 w~~~~~~k 92 (142)
T 1zbf_A 85 WVKDKKAK 92 (142)
T ss_dssp HHHHTCCC
T ss_pred HHHcCCcc
Confidence 99988643
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.29 E-value=3e-12 Score=109.75 Aligned_cols=80 Identities=14% Similarity=0.021 Sum_probs=59.9
Q ss_pred CCcEEEEEcCCcc--CCCeEEEEEEecC-CEEEEEecCCCCchhHHhHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHh
Q psy5156 15 KDFLKIYTDGSKD--ETGVGCALIIPQL-NVTKRFTLNKYSSIFHAELFSILQSLKNAKLLNIKKVLIISDSLSSFQAIS 91 (389)
Q Consensus 15 ~~~~~IyTDGS~~--~~~~G~avv~~~~-~~~~~~~l~~~~t~~~AEl~AI~~AL~~a~~~~~~~i~I~sDSq~al~~l~ 91 (389)
+....||||||+. +|..|+|+|+... ......+..+.+||++||++|++.||+.+.+.+.. +.|+|||++|++.+.
T Consensus 3 p~~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~~~tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqyVi~wi~ 81 (134)
T 4htu_A 3 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQTAIKWVK 81 (134)
T ss_dssp CCSSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEEEEECHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHHHHHHHH
T ss_pred ccceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCCCCCchHHHHHHHHHHHHHHHHhCCCC-EEEEcchHHHHHHHH
Confidence 4567899999997 4558886565543 32222222237899999999999999999875434 899999999999998
Q ss_pred cCCC
Q psy5156 92 NLYH 95 (389)
Q Consensus 92 ~~~~ 95 (389)
++.-
T Consensus 82 ~~~~ 85 (134)
T 4htu_A 82 DKKA 85 (134)
T ss_dssp HTCC
T ss_pred cCCc
Confidence 7643
No 17
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=85.28 E-value=0.88 Score=37.20 Aligned_cols=83 Identities=18% Similarity=0.260 Sum_probs=65.7
Q ss_pred hhhHHHHHHHhhhHHHhhhh----hhhhhcccchhhhhhccCC--CCChhHHHHHHHHHh-hhhhhhcccCCCCCCcccc
Q psy5156 105 HAELFSILQSLKNAELLNIK----KVLIISDSLSSFQAISNLY--HPNPLVKEIQETYSS-AQISIKFLWCPSHPCWYFW 177 (389)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~ 177 (389)
.+|+.+++.||+....++.+ +++|.|||...++.+.+.+ .+.+++..++++... ..
T Consensus 47 ~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~vi~~i~~~~~~~~~~l~~~~~~i~~l~~~----------------- 109 (140)
T 3u3g_D 47 VAEYEALIRALEDLQMFGDKLVDMEVEVRMDSELIVRQMQGVYKVKEPTLKEKFAKIAHIKME----------------- 109 (140)
T ss_dssp HHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHHHHHHHTTSSCCCCGGGHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHHHHHHhCCCcccCCHHHHHHHHHHHHHhhc-----------------
Confidence 57999999999988888888 9999999999999998854 344566555555433 21
Q ss_pred cccCCCceEEEEEeecCCCCccchHHHHHHhhhcC
Q psy5156 178 KRSSSQISIKFLWCPSHVGISGNDQADTEAKKATS 212 (389)
Q Consensus 178 ~~~~~~~~i~~~wvp~H~g~~gNe~aD~~Ak~a~~ 212 (389)
.-..|+|.|||+ +||+.||+|||+|+.
T Consensus 110 ----~~~~v~~~~V~~----~~N~~AD~LA~~a~~ 136 (140)
T 3u3g_D 110 ----RVPNLVFVHIPR----EKNARADELVNEAID 136 (140)
T ss_dssp ----HCTTCEEEECCG----GGGHHHHHHHHHHHH
T ss_pred ----CCCcEEEEEcCc----hhhHHHHHHHHHHHH
Confidence 113899999995 799999999999875
No 18
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=81.76 E-value=1.1 Score=36.81 Aligned_cols=85 Identities=24% Similarity=0.288 Sum_probs=67.1
Q ss_pred hhhHHHHHHHhhhHHHhhhhhhhhhcccchhhhhhccCC--CCChhHHHHHHHHHhhhhhhhcccCCCCCCcccccccCC
Q psy5156 105 HAELFSILQSLKNAELLNIKKVLIISDSLSSFQAISNLY--HPNPLVKEIQETYSSAQISIKFLWCPSHPCWYFWKRSSS 182 (389)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (389)
.+|+.+++.+|+....++.++++|.|||....+.+.+.+ .+..++..++++.... +.
T Consensus 48 ~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~i~~~~~~~~~~l~~~~~~i~~l~---------------------~~ 106 (141)
T 3hst_B 48 VAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALA---------------------SQ 106 (141)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHTTSSCCCSHHHHHHHHHHHHHH---------------------TT
T ss_pred HHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHHHhCCcccCCHHHHHHHHHHHHHH---------------------hc
Confidence 589999999999988888999999999999999998743 3334555455444332 23
Q ss_pred CceEEEEEeecCCCCccchHHHHHHhhhcCCC
Q psy5156 183 QISIKFLWCPSHVGISGNDQADTEAKKATSEP 214 (389)
Q Consensus 183 ~~~i~~~wvp~H~g~~gNe~aD~~Ak~a~~~~ 214 (389)
...|+|.|||+ ++|+.||+|||+|+...
T Consensus 107 ~~~v~~~~V~~----~~N~~AD~LA~~a~~~~ 134 (141)
T 3hst_B 107 FRRINYEWVPR----ARNTYADRLANDAMDAA 134 (141)
T ss_dssp SSEEEEEECCG----GGCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCC----cccHHHHHHHHHHHHHh
Confidence 46999999996 69999999999987653
No 19
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=80.46 E-value=0.34 Score=48.70 Aligned_cols=76 Identities=11% Similarity=-0.026 Sum_probs=47.6
Q ss_pred CCcEEEEEcCCccCCCeEEEEEEec--CC---EEE-EEec---CCCCchhHHhHHHHHHHHHHHHhc-CCceEEEEcCCH
Q psy5156 15 KDFLKIYTDGSKDETGVGCALIIPQ--LN---VTK-RFTL---NKYSSIFHAELFSILQSLKNAKLL-NIKKVLIISDSL 84 (389)
Q Consensus 15 ~~~~~IyTDGS~~~~~~G~avv~~~--~~---~~~-~~~l---~~~~t~~~AEl~AI~~AL~~a~~~-~~~~i~I~sDSq 84 (389)
...+.+|||+|.. ++| ||+... +. +.. +-.+ ...-+.++.|++||..|++..... .+.++.|+||+.
T Consensus 344 ~~~~~l~~DAS~~--~~g-avL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh~ 420 (455)
T 1rw3_A 344 TKPFELFVDEKQG--YAK-GVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA 420 (455)
T ss_dssp CCTTSCEEEEEEC--SSS-BEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC
T ss_pred CCcEEEEEeccCC--cce-eEEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecCh
Confidence 3457899999843 233 233321 11 111 1112 234567889999999999987653 567999999997
Q ss_pred HHHHHHhcCC
Q psy5156 85 SSFQAISNLY 94 (389)
Q Consensus 85 ~al~~l~~~~ 94 (389)
++..+.+..
T Consensus 421 -~~~~l~~~~ 429 (455)
T 1rw3_A 421 -VEALVKQPP 429 (455)
T ss_dssp -TTTTSSSTT
T ss_pred -HHHHhCCCc
Confidence 666665543
No 20
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=72.15 E-value=7.5 Score=38.63 Aligned_cols=79 Identities=10% Similarity=-0.023 Sum_probs=48.2
Q ss_pred CCcEEEEEcCCccCCCeEEEEEEecC--CEE--EEEecCCCCchhHHhHHH-HHHHHHHHHhc--C--CceEEEEcCCHH
Q psy5156 15 KDFLKIYTDGSKDETGVGCALIIPQL--NVT--KRFTLNKYSSIFHAELFS-ILQSLKNAKLL--N--IKKVLIISDSLS 85 (389)
Q Consensus 15 ~~~~~IyTDGS~~~~~~G~avv~~~~--~~~--~~~~l~~~~t~~~AEl~A-I~~AL~~a~~~--~--~~~i~I~sDSq~ 85 (389)
...+.++||+|.. | ++|++..+. ... ..+........+.-|++| |+.||+..... | ...++++||.+.
T Consensus 322 ~~~~~l~~das~~--g-~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~G~~~~~~i~~td~~~ 398 (428)
T 2zd1_B 322 SKDLIAEIQKQGQ--G-QWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETW 398 (428)
T ss_dssp TSCCEEEEEEEET--T-EEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCEEEESSCHHHH
T ss_pred CCCEEEEEecCCC--C-cEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEEECCCCcEECCccHHHH
Confidence 4568999999932 2 334444432 222 223333344456677777 99999865432 2 356788899998
Q ss_pred HHHHHhcCCCC
Q psy5156 86 SFQAISNLYHP 96 (389)
Q Consensus 86 al~~l~~~~~~ 96 (389)
.......|...
T Consensus 399 ~~~~~~~~q~~ 409 (428)
T 2zd1_B 399 ETWWTEYWQAT 409 (428)
T ss_dssp HHHHHHHCCCS
T ss_pred HHHHHhccccc
Confidence 77666666554
No 21
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=70.79 E-value=3.8 Score=34.15 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=36.7
Q ss_pred chhhHHHHHHHhhhHHHhhhhhhhhhcccchhhhhhccCCC
Q psy5156 104 PHAELFSILQSLKNAELLNIKKVLIISDSLSSFQAISNLYH 144 (389)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 144 (389)
..+|+.+++.||+....++.++++|.|||....+.+.+.+.
T Consensus 49 n~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~vi~~i~~~w~ 89 (149)
T 2ehg_A 49 NVAEYSGLICLMETMLRLGISSPIIKGDSQLVIKQMNGEYK 89 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSCEEEESCHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEeChHHHHHHHhCccc
Confidence 36899999999999888899999999999999999988643
No 22
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=65.06 E-value=2.2 Score=36.02 Aligned_cols=38 Identities=24% Similarity=0.460 Sum_probs=32.2
Q ss_pred chhhHHHHHHHhhhHHHhhhhhhhhhcccchhhhhhcc
Q psy5156 104 PHAELFSILQSLKNAELLNIKKVLIISDSLSSFQAISN 141 (389)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 141 (389)
..+|+.+++.||+.....+.++++|.|||...++.|.+
T Consensus 51 ~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~vi~~i~~ 88 (154)
T 2qkb_A 51 QRAEIHAACKAIEQAKTQNINKLVLYTNSMFTINGITN 88 (154)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEESCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEEEECcHHHHhhhhh
Confidence 46899999999998877788999999999877777654
No 23
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=60.04 E-value=13 Score=30.79 Aligned_cols=54 Identities=13% Similarity=0.103 Sum_probs=38.3
Q ss_pred CCeEEEEEEecCCEEEEEecCCCCchhHHhHHHHHHHHHHHHhcCCceEEEEcCC
Q psy5156 29 TGVGCALIIPQLNVTKRFTLNKYSSIFHAELFSILQSLKNAKLLNIKKVLIISDS 83 (389)
Q Consensus 29 ~~~G~avv~~~~~~~~~~~l~~~~t~~~AEl~AI~~AL~~a~~~~~~~i~I~sDS 83 (389)
-.+|++++..++++..............||..||..|... -....+.+++++|.
T Consensus 27 f~VGAal~~~dG~i~~G~NvE~~~~t~cAE~~Ai~~A~~~-G~~~~~~i~vv~~~ 80 (130)
T 2z3g_A 27 YSVASAALSSDGRIFTGVNVYHFTGGPCAELVVLGTAAAA-AAGNLTCIVAIGNE 80 (130)
T ss_dssp SCEEEEEEETTSCEEEEECCCCTTTCCCHHHHHHHHHHHT-TCCCEEEEEEEETT
T ss_pred CCEEEEEEecCCeEEEEeccccCCcccCHHHHHHHHHHHc-CCCceEEEEEEECC
Confidence 4689998888887766555553444678999999999874 22245677888874
No 24
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=57.47 E-value=18 Score=30.56 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=38.9
Q ss_pred CCCeEEEEEEecCCEEEEEecCC--CCchhHHhHHHHHHHHHHHHhcCCceEEEEcCC
Q psy5156 28 ETGVGCALIIPQLNVTKRFTLNK--YSSIFHAELFSILQSLKNAKLLNIKKVLIISDS 83 (389)
Q Consensus 28 ~~~~G~avv~~~~~~~~~~~l~~--~~t~~~AEl~AI~~AL~~a~~~~~~~i~I~sDS 83 (389)
+..+|++++..++.+..+..... ..-...||..||..|... -......+.|++|.
T Consensus 35 ~f~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~~~~ 91 (146)
T 2fr5_A 35 RFPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISE-GYKDFRAIAISSDL 91 (146)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESC
T ss_pred CCCEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhC-CCCceEEEEEEeCC
Confidence 34699998888887776555442 223577999999999875 22345688899884
No 25
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=54.22 E-value=12 Score=31.30 Aligned_cols=53 Identities=17% Similarity=0.170 Sum_probs=39.9
Q ss_pred hhhHHHHHHHhhhHHHhhhhhhhhhcccchhhhhhcc---------CCCCChhHHHHHHHHHh
Q psy5156 105 HAELFSILQSLKNAELLNIKKVLIISDSLSSFQAISN---------LYHPNPLVKEIQETYSS 158 (389)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---------~~~~~~~~~~i~~~~~~ 158 (389)
.+|+.+++.||+.+...+.+ +.|.|||+-..+.+.+ +..+.+|++.+.+....
T Consensus 47 ~aEl~A~i~aL~~l~~~~~~-v~i~tDSqyVi~wi~~~~~kt~~~~~vkN~dLw~~ld~~~~~ 108 (134)
T 4htu_A 47 MGEFLAIVHGLRYLKERNSR-KPIYSNSQTAIKWVKDKKAKSTLVRNEETALIWKLVDEAEEW 108 (134)
T ss_dssp HHHHHHHHHHHHHHHHTTCC-CCEEESCHHHHHHHHHTCCCCCCCCSSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCC-EEEEcchHHHHHHHHcCCcccCCCCCccCHHHHHHHHHHHHH
Confidence 36899999999887666655 8999999988887654 33566888887766544
No 26
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=47.59 E-value=41 Score=27.91 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=37.4
Q ss_pred CeEEEEEEecCCEEEEEecCC--CCchhHHhHHHHHHHHHHHHhcCCceEEEEcCC
Q psy5156 30 GVGCALIIPQLNVTKRFTLNK--YSSIFHAELFSILQSLKNAKLLNIKKVLIISDS 83 (389)
Q Consensus 30 ~~G~avv~~~~~~~~~~~l~~--~~t~~~AEl~AI~~AL~~a~~~~~~~i~I~sDS 83 (389)
.+|++++..++++..+..... ..-...||..||..|... -......++|++|.
T Consensus 25 ~VGAal~~~dG~i~~G~Nvena~~~~t~cAE~~Ai~~A~~~-G~~~~~~~~l~~~~ 79 (136)
T 1uwz_A 25 QVGAALLTKDGKVYRGCNIENAAYSMCNCAEATALFKAVSE-GDTEFQMLAVAADT 79 (136)
T ss_dssp CEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHH-TCCCEEEEEEEESC
T ss_pred CEEEEEEeCCCeEEEEeCcccCCCCCccCHHHHHHHHHHHC-CCCCeEEEEEEeCC
Confidence 588888877777765555442 223577999999999875 33345688888874
No 27
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=42.61 E-value=33 Score=28.80 Aligned_cols=55 Identities=18% Similarity=0.252 Sum_probs=39.2
Q ss_pred CCeEEEEEEecCCEEEEEecCC--CCchhHHhHHHHHHHHHHHHhcCCceEEEEcCCH
Q psy5156 29 TGVGCALIIPQLNVTKRFTLNK--YSSIFHAELFSILQSLKNAKLLNIKKVLIISDSL 84 (389)
Q Consensus 29 ~~~G~avv~~~~~~~~~~~l~~--~~t~~~AEl~AI~~AL~~a~~~~~~~i~I~sDSq 84 (389)
-.+|++++..++.+..+..... +....-||..||..|...- ......|.|.+|..
T Consensus 33 f~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Avs~G-~~~~~aiav~~~~~ 89 (141)
T 2d30_A 33 FQVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSEG-DKEFVAIAIVADTK 89 (141)
T ss_dssp CCEEEEEEETTCCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEEESCS
T ss_pred CcEEEEEEeCCCCEEEeeccccCCCCcccCHHHHHHHHHHHCC-CCceEEEEEEeCCC
Confidence 3699998888888776666542 3345779999999998742 22456888888853
No 28
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=35.28 E-value=60 Score=27.08 Aligned_cols=57 Identities=23% Similarity=0.280 Sum_probs=39.2
Q ss_pred CCCeEEEEEEecCCEEEEEecCC--CCchhHHhHHHHHHHHHHHHhcCCceEEEEcCCH
Q psy5156 28 ETGVGCALIIPQLNVTKRFTLNK--YSSIFHAELFSILQSLKNAKLLNIKKVLIISDSL 84 (389)
Q Consensus 28 ~~~~G~avv~~~~~~~~~~~l~~--~~t~~~AEl~AI~~AL~~a~~~~~~~i~I~sDSq 84 (389)
+-.+|++++..++.+..+..... ......||..||..|...-.....+.++|++|..
T Consensus 31 ~f~VGAAl~~~dG~i~~G~NvEnasy~~t~cAEr~Ai~~a~~~G~~~~i~~i~vv~~~~ 89 (142)
T 1r5t_A 31 HFRVGCSILTNNDVIFTGANVENASYSNCICAERSAMIQVLMAGHRSGWKCMVICGDSE 89 (142)
T ss_dssp CCCEEEEEECTTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCSCCCEEEEEESCS
T ss_pred CCCEEEEEEeCCCCEEEEEeecccCCCCCcCHHHHHHHHHHHcCCCCceEEEEEEeCCC
Confidence 34689998877887776665542 2245779999999998753221266889998753
No 29
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=34.34 E-value=49 Score=28.16 Aligned_cols=54 Identities=11% Similarity=0.053 Sum_probs=37.9
Q ss_pred CCeEEEEEEecCCEEEEEecCC--CCchhHHhHHHHHHHHHHHHhcCCceEEEEcCC
Q psy5156 29 TGVGCALIIPQLNVTKRFTLNK--YSSIFHAELFSILQSLKNAKLLNIKKVLIISDS 83 (389)
Q Consensus 29 ~~~G~avv~~~~~~~~~~~l~~--~~t~~~AEl~AI~~AL~~a~~~~~~~i~I~sDS 83 (389)
-++|+++...++++..+..... +....-||-.||..|+..- ......+.|.+|.
T Consensus 46 F~VGAAll~~dG~i~tG~NvEnasy~~t~CAEr~Ai~~Avs~G-~~~i~aiavv~~~ 101 (150)
T 3mpz_A 46 FPVGAAALVDDGRTVTGCNVENVSYGLGLCAECAVVCALHSGG-GGRLVALSCVGPD 101 (150)
T ss_dssp CCCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEECTT
T ss_pred CCEEEEEEeCCCCEEEEEecccccCCccccHHHHHHHHHHHcC-CCceEEEEEEcCC
Confidence 3699999998888876666542 2345679999999998742 2234567787764
No 30
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=33.99 E-value=19 Score=28.72 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=23.6
Q ss_pred CCCcCCCCCcccchhhcccCCc-cCCCCC
Q psy5156 297 PICDSCHEPVTVEHIILHCNKL-RFRPPS 324 (389)
Q Consensus 297 p~C~~Cg~~eT~~HiL~~Cp~~-~~R~~l 324 (389)
-.|+.||...+-.|.+-+||.. .....+
T Consensus 72 Y~CpiCGATGd~AHT~kYCP~~~~~~~sv 100 (106)
T 3alr_A 72 YKCPLCGATGAKAHTKRFCPMVDKNYCSV 100 (106)
T ss_dssp CCCTTTCCCGGGCCCGGGCTTCGGGGCCC
T ss_pred ccCCCCCCcCCcccceecCCCCCCccCce
Confidence 5899999999999999999988 555444
No 31
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=33.26 E-value=9.4 Score=31.61 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=27.9
Q ss_pred hhhHHHHHHHhhhHHHhhhhhhhhhcccchhhhhhcc
Q psy5156 105 HAELFSILQSLKNAELLNIKKVLIISDSLSSFQAISN 141 (389)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 141 (389)
.+|+.+++.||+... ..++++|.|||...++.+.+
T Consensus 46 ~aEl~A~~~AL~~~~--~~~~v~I~tDS~~vi~~i~~ 80 (146)
T 3h08_A 46 RMELMAAIKGLEALK--EPARVQLYSDSAYLVNAMNE 80 (146)
T ss_dssp HHHHHHHHHHHHTCS--SCCEEEEEESCHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcC--ccCcEEEEeChHHHHHHHHH
Confidence 478999999987653 35789999999888777655
No 32
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=30.87 E-value=24 Score=29.30 Aligned_cols=30 Identities=27% Similarity=0.329 Sum_probs=24.6
Q ss_pred cchhhHHHHHHHhhhHHHhhhhhhhhhcccc
Q psy5156 103 IPHAELFSILQSLKNAELLNIKKVLIISDSL 133 (389)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 133 (389)
-..+|+.+++.||+.....+. +++|.|||.
T Consensus 50 Nn~aEl~A~~~AL~~a~~~~~-~v~I~tDS~ 79 (147)
T 2kq2_A 50 NVAGEIAAALYAVKKASQLGV-KIRILHDYA 79 (147)
T ss_dssp TTHHHHHHHHHHHHHHHHHTC-CCCBSSCCS
T ss_pred HHHHHHHHHHHHHHHHHHCCC-eEEEEECcH
Confidence 346899999999986655677 999999984
No 33
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=29.93 E-value=11 Score=31.84 Aligned_cols=35 Identities=26% Similarity=0.247 Sum_probs=27.3
Q ss_pred hhhHHHHHHHhhhHHHhhhhhhhhhcccchhhhhhcc
Q psy5156 105 HAELFSILQSLKNAELLNIKKVLIISDSLSSFQAISN 141 (389)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 141 (389)
.+|+.+++.||+.+.. .++++|.|||...++.|.+
T Consensus 48 ~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~~ 82 (158)
T 2e4l_A 48 RMELLAPIVALEALKE--PCKIILTSDSQYMRQGIMT 82 (158)
T ss_dssp HHHHHHHHHHHHTCSS--CCEEEEEECCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcc--CCeEEEEeCHHHHHHHHHH
Confidence 5799999999876532 2789999999887777655
No 34
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=29.89 E-value=20 Score=30.07 Aligned_cols=77 Identities=16% Similarity=0.106 Sum_probs=59.0
Q ss_pred hhhHHHHHHHhhhHHHhhhhhhhhhcccchhhhhhccCC---------CCChhHHHHHHHHHhhhhhhhcccCCCCCCcc
Q psy5156 105 HAELFSILQSLKNAELLNIKKVLIISDSLSSFQAISNLY---------HPNPLVKEIQETYSSAQISIKFLWCPSHPCWY 175 (389)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (389)
.+|+.+++.||+.+...+. ++.|.|||.-..+.+++.+ .+.+|++.|.+.....+
T Consensus 53 ~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~vi~w~~~~~~k~~~~~~v~n~dLw~~l~~~~~w~~--------------- 116 (142)
T 1zbf_A 53 MGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLN--------------- 116 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHHHHHHTCCCCCCCCSTTTHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHHhCCC-eEEEEEehHHHHHHHHcCCccCCCCCCcccHHHHHHHHHHHHHHh---------------
Confidence 4689999999988877777 9999999999988877654 34467777766654432
Q ss_pred cccccCCCceEEEEEeecCCCCccchHHH
Q psy5156 176 FWKRSSSQISIKFLWCPSHVGISGNDQAD 204 (389)
Q Consensus 176 ~~~~~~~~~~i~~~wvp~H~g~~gNe~aD 204 (389)
+..++...+.-|++.-||..||
T Consensus 117 -------~~~~~~~~~kw~~~~~ge~pad 138 (142)
T 1zbf_A 117 -------THTYETPILKWQTDKWGEIKAD 138 (142)
T ss_dssp -------HCCCCCCEEECCHHHHCSCTTC
T ss_pred -------hCCCceeEEEeccCccCcCccc
Confidence 3456777788898888999888
No 35
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=29.38 E-value=61 Score=27.76 Aligned_cols=52 Identities=15% Similarity=0.145 Sum_probs=35.4
Q ss_pred CeEEEEEEecCCEEEEEecCCCCchhHHhHHHHHHHHHHHHhcCCceEEEEcC
Q psy5156 30 GVGCALIIPQLNVTKRFTLNKYSSIFHAELFSILQSLKNAKLLNIKKVLIISD 82 (389)
Q Consensus 30 ~~G~avv~~~~~~~~~~~l~~~~t~~~AEl~AI~~AL~~a~~~~~~~i~I~sD 82 (389)
.+|+|+...++++..+..........-||-.||..|+..-. .....+.+.+|
T Consensus 52 ~VGAAll~~dG~i~tG~NVEn~~~~lCAEr~Ai~~Avs~G~-~~~~ai~vv~~ 103 (158)
T 3oj6_A 52 SVASAAISDDGRVFSGVNVYHFNGGPCAELVVLGVAAAAGA-TKLTHIVAIAN 103 (158)
T ss_dssp CEEEEEEETTSCEEEEECCCCTTTCCCHHHHHHHHHHHTTC-CCEEEEEEEET
T ss_pred cEEEEEEeCCCCEEEEEccccCCccccHHHHHHHHHHHhCC-CceEEEEEEeC
Confidence 69999999888887766665444456799999999885321 12344555555
No 36
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=27.24 E-value=83 Score=26.28 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=38.7
Q ss_pred CCeEEEEEEecCCEEEEEecCC--CCchhHHhHHHHHHHHHHHHh-cCCceEEEEcCC
Q psy5156 29 TGVGCALIIPQLNVTKRFTLNK--YSSIFHAELFSILQSLKNAKL-LNIKKVLIISDS 83 (389)
Q Consensus 29 ~~~G~avv~~~~~~~~~~~l~~--~~t~~~AEl~AI~~AL~~a~~-~~~~~i~I~sDS 83 (389)
=.+|+|+...++++..+...+. .....-||-.||..|+..-.. ...+.+.|.+|.
T Consensus 32 F~VGAAll~~dG~iytG~NVEnasy~~t~CAEr~Ai~~Avs~G~~~~~i~aiavv~~~ 89 (138)
T 3dmo_A 32 FKVGAALVTNDGKVFHGCNVENASYGLCNCAERTALFSALAAGYRPGEFAAIAVVGET 89 (138)
T ss_dssp CCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCTTCEEEEEEEESC
T ss_pred CCEEEEEEeCCCCEEEEEeecccccccccCHHHHHHHHHHHcCCCcccEEEEEEEcCC
Confidence 3699999998888877766542 333567999999999864211 134578888886
No 37
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=26.57 E-value=14 Score=31.11 Aligned_cols=36 Identities=22% Similarity=0.271 Sum_probs=28.1
Q ss_pred hhhHHHHHHHhhhHHHhhhhhhhhhcccchhhhhhccC
Q psy5156 105 HAELFSILQSLKNAELLNIKKVLIISDSLSSFQAISNL 142 (389)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 142 (389)
.+|+.+++.||+.... ..+++|.|||...++.|.++
T Consensus 46 ~aEl~A~~~aL~~~~~--~~~v~I~tDS~~vi~~i~~w 81 (155)
T 1jl1_A 46 RMELMAAIVALEALKE--HAEVILSTDSQYVRQGITQW 81 (155)
T ss_dssp HHHHHHHHHHHHTCCS--CCEEEEEECCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCc--CCcEEEEeCHHHHHHHHHHH
Confidence 5789999998876432 37899999999888777653
No 38
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=25.75 E-value=85 Score=26.16 Aligned_cols=54 Identities=15% Similarity=0.090 Sum_probs=36.9
Q ss_pred CCeEEEEEEecCCEEEEEecCC--CCchhHHhHHHHHHHHHHHHhcCCceEEEEcCC
Q psy5156 29 TGVGCALIIPQLNVTKRFTLNK--YSSIFHAELFSILQSLKNAKLLNIKKVLIISDS 83 (389)
Q Consensus 29 ~~~G~avv~~~~~~~~~~~l~~--~~t~~~AEl~AI~~AL~~a~~~~~~~i~I~sDS 83 (389)
-.+|++++..++.+........ +.....||..||..|...- ......+.|.+|.
T Consensus 31 f~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Av~~G-~~~i~aiav~~~~ 86 (138)
T 3r2n_A 31 FPVGVAGFVNDGRLITGVNVENASYGLALCAECSMISALYATG-GGRLVAVYCVDGN 86 (138)
T ss_dssp CCCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEECTT
T ss_pred CcEEEEEEeCCCcEEEEEcccccCCCCCcCHHHHHHHHHHHcC-CCceEEEEEEcCC
Confidence 3699999888888876665542 2235679999999997742 1234567777663
No 39
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=22.47 E-value=1.8e+02 Score=29.40 Aligned_cols=78 Identities=9% Similarity=-0.022 Sum_probs=44.9
Q ss_pred CCcEEEEEcCCccCCCeEEEEEEec-CC-EE--EEEecCCCCchhHHhHHH-HHHHHHHHHhc--CC-ceEEE-EcCCHH
Q psy5156 15 KDFLKIYTDGSKDETGVGCALIIPQ-LN-VT--KRFTLNKYSSIFHAELFS-ILQSLKNAKLL--NI-KKVLI-ISDSLS 85 (389)
Q Consensus 15 ~~~~~IyTDGS~~~~~~G~avv~~~-~~-~~--~~~~l~~~~t~~~AEl~A-I~~AL~~a~~~--~~-~~i~I-~sDSq~ 85 (389)
...+.+|||+|.. |+ +|+++.+ .. .. ..+........++-|++| +..+|+..... +. ..+.+ ++|++.
T Consensus 324 ~~~~~l~~das~~--g~-~g~vl~q~~~~~~~~~~~~~~~~y~~~e~e~la~vv~~l~~~~~~l~g~~p~~~vp~~~~~~ 400 (557)
T 2zd1_A 324 SKDLIAEIQKQGQ--GQ-WTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETW 400 (557)
T ss_dssp TSCCEEEEEEEET--TE-EEEEEEEETTEEEEEEEEECCSCSEECHHHHHHHHHHHHHHHHHHHHSSCCEEEESBCHHHH
T ss_pred CCCEEEEEecCCC--Cc-EEEEEecCCCceeeeeecccccccCCChHHHHHHHHHHhhhhheEEeCCCCCEECCCcHHHH
Confidence 4568899999842 21 2434433 22 22 223334455567789999 99998864321 22 24555 789887
Q ss_pred HHHHHhcCCC
Q psy5156 86 SFQAISNLYH 95 (389)
Q Consensus 86 al~~l~~~~~ 95 (389)
+......+..
T Consensus 401 ~~~~~~~~~~ 410 (557)
T 2zd1_A 401 ETWWTEYWQA 410 (557)
T ss_dssp HHHHHHCSSC
T ss_pred HHHhhhchhh
Confidence 6665555443
No 40
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=21.79 E-value=19 Score=30.72 Aligned_cols=35 Identities=23% Similarity=0.167 Sum_probs=26.8
Q ss_pred hhhHHHHHHHhhhHHHhhhhhhhhhcccchhhhhhcc
Q psy5156 105 HAELFSILQSLKNAELLNIKKVLIISDSLSSFQAISN 141 (389)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 141 (389)
.+|+.+++.||+.... ..+++|.|||...++.|.+
T Consensus 50 ~aEl~Ai~~AL~~~~~--~~~v~I~tDS~~vi~~i~~ 84 (166)
T 1ril_A 50 RMELKAAIEGLKALKE--PCEVDLYTDSHYLKKAFTE 84 (166)
T ss_dssp HHHHHHHHHHHHSCCS--CCEEEEECCCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcc--CCeEEEEeChHHHHHHHhh
Confidence 5789999998875433 2589999999887777655
No 41
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=20.51 E-value=1.2e+02 Score=22.74 Aligned_cols=34 Identities=24% Similarity=0.481 Sum_probs=28.7
Q ss_pred hhHHHHHHHhhcCCCcEEEEEcCCccCCCeEEEEEE
Q psy5156 2 LQNRFREILHENYKDFLKIYTDGSKDETGVGCALII 37 (389)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~IyTDGS~~~~~~G~avv~ 37 (389)
+++...++|.+. ..+.-|.++...+||.|+-+|.
T Consensus 47 Lr~~V~~~L~~~--~~V~~f~~a~~~~GG~Gat~V~ 80 (83)
T 2zqe_A 47 LRQAIREALRRD--KRVESFADAPPGEGGHGVTVVA 80 (83)
T ss_dssp HHHHHHHHHHHC--TTEEEEEECCTTTTGGGEEEEE
T ss_pred HHHHHHHHHhcC--CceeEEEEcCcccCCCEEEEEE
Confidence 678889999984 5788999999999999988765
Done!