Query psy5156
Match_columns 389
No_of_seqs 245 out of 1707
Neff 6.8
Searched_HMMs 13730
Date Fri Aug 16 18:48:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5156.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5156hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mu2a1 c.55.3.1 (A:430-555) H 99.9 1.8E-23 1.3E-27 176.0 14.5 123 12-211 2-126 (126)
2 d1rila_ c.55.3.1 (A:) RNase H 99.9 1.4E-24 1E-28 187.2 3.4 140 16-214 2-144 (147)
3 d1jl1a_ c.55.3.1 (A:) RNase H 99.9 5.9E-24 4.3E-28 183.4 7.2 141 17-217 2-145 (152)
4 d1s1ta1 c.55.3.1 (A:430-539) H 99.7 4.9E-18 3.5E-22 139.6 12.4 79 12-96 3-83 (110)
5 d1zbfa1 c.55.3.1 (A:62-193) BH 99.6 1.6E-16 1.2E-20 133.8 5.4 123 19-204 6-131 (132)
6 d1s1ta1 c.55.3.1 (A:430-539) H 52.3 1.9 0.00014 32.8 0.8 62 105-194 47-110 (110)
7 d2d30a1 c.97.1.1 (A:1-124) mon 38.0 29 0.0021 26.4 5.9 54 30-84 25-80 (124)
8 d1mu2a1 c.55.3.1 (A:430-555) H 38.0 4.9 0.00035 30.6 1.1 35 105-143 46-80 (126)
9 d1r5ta_ c.97.1.1 (A:) mono-dom 29.9 29 0.0021 27.0 4.7 55 30-84 32-88 (141)
10 d1zbfa1 c.55.3.1 (A:62-193) BH 28.2 10 0.00076 29.6 1.6 37 105-142 46-82 (132)
11 d1o0wa2 d.50.1.1 (A:168-236) R 23.3 93 0.0068 20.2 6.2 64 2-69 2-68 (69)
12 d2z3ga1 c.97.1.1 (A:2-124) Bla 23.0 47 0.0034 25.2 4.6 53 29-82 26-78 (123)
13 d1uwza_ c.97.1.1 (A:) mono-dom 21.8 70 0.0051 24.2 5.5 54 30-84 25-80 (130)
No 1
>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=99.90 E-value=1.8e-23 Score=176.02 Aligned_cols=123 Identities=23% Similarity=0.254 Sum_probs=90.2
Q ss_pred hcCCCcEEEEEcCCccC--CCeEEEEEEecCCEEEEEecCCCCchhHHhHHHHHHHHHHHHhcCCceEEEEcCCHHHHHH
Q psy5156 12 ENYKDFLKIYTDGSKDE--TGVGCALIIPQLNVTKRFTLNKYSSIFHAELFSILQSLKNAKLLNIKKVLIISDSLSSFQA 89 (389)
Q Consensus 12 ~~~~~~~~IyTDGS~~~--~~~G~avv~~~~~~~~~~~l~~~~t~~~AEl~AI~~AL~~a~~~~~~~i~I~sDSq~al~~ 89 (389)
++.++..++|||||+.. +..|+|++++.+.. ....+ +..||+.|||.||+.||+. ...++.|+|||+++++.
T Consensus 2 ~p~~~~~t~YTDGS~~~n~~~~~~g~~~~~~~~-~~~~~-~~~tnn~AEl~Ai~~al~~----~~~~i~I~tDS~~v~~~ 75 (126)
T d1mu2a1 2 DPIPGAETFYTDGSCNRQSKEGKAGYVTDRGKD-KVKKL-EQTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGI 75 (126)
T ss_dssp SCCTTCEEEEEEEEECTTTCCEEEEEEETTSCE-EEEEE-SSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHH
T ss_pred CCCCCCcEEEEcCCCCCCCCcEEEEEEecCCCE-EEEec-CCCcchHHHHHHHHHHhcc----CCcceEEEechHHHHHH
Confidence 34567789999999873 34667766665443 22233 3579999999999999985 36789999999999999
Q ss_pred HhcCCCCCccccccchhhHHHHHHHhhhHHHhhhhhhhhhcccchhhhhhccCCCCChhHHHHHHHHHhhhhhhhcccCC
Q psy5156 90 ISNLYHPNPLVKEIPHAELFSILQSLKNAELLNIKKVLIISDSLSSFQAISNLYHPNPLVKEIQETYSSAQISIKFLWCP 169 (389)
Q Consensus 90 l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (389)
+.++...+.. ....+.++++..
T Consensus 76 ~~~~~~~~~~----------------------------------------------~~~~~~~~~~~~------------ 97 (126)
T d1mu2a1 76 VASQPTESES----------------------------------------------KIVNQIIEEMIK------------ 97 (126)
T ss_dssp HHTCCSEESC----------------------------------------------HHHHHHHHHHHH------------
T ss_pred HhcCCccccc----------------------------------------------hHHHHHHHHhhh------------
Confidence 9987654321 001122333332
Q ss_pred CCCCcccccccCCCceEEEEEeecCCCCccchHHHHHHhhhc
Q psy5156 170 SHPCWYFWKRSSSQISIKFLWCPSHVGISGNDQADTEAKKAT 211 (389)
Q Consensus 170 ~~~~~~~~~~~~~~~~i~~~wvp~H~g~~gNe~aD~~Ak~a~ 211 (389)
..+|.|.|||||+|++|||.||+||++|.
T Consensus 98 -------------~~~v~~~wV~gH~g~~gNe~AD~LA~~ai 126 (126)
T d1mu2a1 98 -------------KEAIYVAWVPAHKGIGGNQEVDHLVSQGI 126 (126)
T ss_dssp -------------CSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred -------------cceeEEEEEeCCCCCcchHHHHHHHHhhC
Confidence 24899999999999999999999999974
No 2
>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus [TaxId: 274]}
Probab=99.89 E-value=1.4e-24 Score=187.25 Aligned_cols=140 Identities=16% Similarity=0.109 Sum_probs=97.1
Q ss_pred CcEEEEEcCCccC--CCeEEEEEEecCC-EEEEEecCCCCchhHHhHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHhc
Q psy5156 16 DFLKIYTDGSKDE--TGVGCALIIPQLN-VTKRFTLNKYSSIFHAELFSILQSLKNAKLLNIKKVLIISDSLSSFQAISN 92 (389)
Q Consensus 16 ~~~~IyTDGS~~~--~~~G~avv~~~~~-~~~~~~l~~~~t~~~AEl~AI~~AL~~a~~~~~~~i~I~sDSq~al~~l~~ 92 (389)
..++||||||+.+ +..|+|+|+...+ ....++....+||++||+.|++.||+.+.. ...+.|++||+++++.+..
T Consensus 2 ~~i~iytDGs~~~N~g~~G~g~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~--~~~i~i~tds~~~~~~~~~ 79 (147)
T d1rila_ 2 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKE--PCEVDLYTDSHYLKKAFTE 79 (147)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEEEEECHHHHHHHHHHHHHHSCCS--CCEEEEECCCHHHHHHHHS
T ss_pred CEEEEEEccCCCCCCCccEEEEEEEECCcceEEecccccccHHHHHHHHHHHHhhhccC--CceEEEecchhhhhccccc
Confidence 3589999999985 3478888875433 222223334679999999999999987643 5789999999999999987
Q ss_pred CCCCCccccccchhhHHHHHHHhhhHHHhhhhhhhhhcccchhhhhhccCCCCChhHHHHHHHHHhhhhhhhcccCCCCC
Q psy5156 93 LYHPNPLVKEIPHAELFSILQSLKNAELLNIKKVLIISDSLSSFQAISNLYHPNPLVKEIQETYSSAQISIKFLWCPSHP 172 (389)
Q Consensus 93 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 172 (389)
....... . + ....+..+ +..+.+|+++|.++..
T Consensus 80 ~~~~~~~-------------~---~------------~~~~~~~~----~v~n~dL~~~l~~~~~--------------- 112 (147)
T d1rila_ 80 GWLEGWR-------------K---R------------GWRTAEGK----PVKNRDLWEALLLAMA--------------- 112 (147)
T ss_dssp SHHHHHH-------------H---T------------TSBCTTSS----BCTTHHHHHHHHHHHT---------------
T ss_pred cchhhhh-------------h---c------------cccccccc----cchhHHHHHHHHHHhh---------------
Confidence 5432100 0 0 01111112 2223345555544432
Q ss_pred CcccccccCCCceEEEEEeecCCCCccchHHHHHHhhhcCCC
Q psy5156 173 CWYFWKRSSSQISIKFLWCPSHVGISGNDQADTEAKKATSEP 214 (389)
Q Consensus 173 ~~~~~~~~~~~~~i~~~wvp~H~g~~gNe~aD~~Ak~a~~~~ 214 (389)
+.+|+|+|||||+|++|||.||+|||+|+...
T Consensus 113 ----------~~~v~~~wVkgHsg~~gNe~AD~LAk~aa~~~ 144 (147)
T d1rila_ 113 ----------PHRVRFHFVKGHTGHPENERVDREARRQAQSQ 144 (147)
T ss_dssp ----------TSEEECCCCCGGGSCTHHHHHHHHHHHHHTSS
T ss_pred ----------hcccceEEccCCCCCcchHHHHHHHHHHHHHh
Confidence 35899999999999999999999999998764
No 3
>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId: 562]}
Probab=99.89 E-value=5.9e-24 Score=183.36 Aligned_cols=141 Identities=22% Similarity=0.234 Sum_probs=97.0
Q ss_pred cEEEEEcCCccC--CCeEEEEEEecCCEEEEE-ecCCCCchhHHhHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHhcC
Q psy5156 17 FLKIYTDGSKDE--TGVGCALIIPQLNVTKRF-TLNKYSSIFHAELFSILQSLKNAKLLNIKKVLIISDSLSSFQAISNL 93 (389)
Q Consensus 17 ~~~IyTDGS~~~--~~~G~avv~~~~~~~~~~-~l~~~~t~~~AEl~AI~~AL~~a~~~~~~~i~I~sDSq~al~~l~~~ 93 (389)
.+.||||||+.+ +.+|+|+|+...+....+ ...+.+||+.||++|++.||+.+.. ...+.|++||++++..+..+
T Consensus 2 ~I~IYtDGS~~~N~g~aG~G~vi~~~~~~~~~~~~~~~~tnn~aE~~Ai~~Al~~~~~--~~~i~i~tds~~~i~~~~~~ 79 (152)
T d1jl1a_ 2 QVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE--HAEVILSTDSQYVRQGITQW 79 (152)
T ss_dssp CEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTCCS--CCEEEEEECCHHHHHHHHTT
T ss_pred EEEEEEeCCCCCCCCcEEEEEEEEECCeEEEeccccCcccHHHHHHhhhhhhhhhhcc--cceEEEeecceeeEEcccch
Confidence 589999999874 458999888655433322 2235678999999999999997654 57899999999999998866
Q ss_pred CCCCccccccchhhHHHHHHHhhhHHHhhhhhhhhhcccchhhhhhccCCCCChhHHHHHHHHHhhhhhhhcccCCCCCC
Q psy5156 94 YHPNPLVKEIPHAELFSILQSLKNAELLNIKKVLIISDSLSSFQAISNLYHPNPLVKEIQETYSSAQISIKFLWCPSHPC 173 (389)
Q Consensus 94 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 173 (389)
...+-. .. ...+ -+.+..+.++++.|.+++
T Consensus 80 ~~~~~~-------------~~----------------~~~~----~~~~~~n~~~~~~i~~~~----------------- 109 (152)
T d1jl1a_ 80 IHNWKK-------------RG----------------WKTA----DKKPVKNVDLWQRLDAAL----------------- 109 (152)
T ss_dssp HHHHHH-------------TT----------------TBCT----TSCBCTTHHHHHHHHHHT-----------------
T ss_pred hhHhHh-------------cc----------------chhc----ccCeeecHHHHHHHHHHh-----------------
Confidence 432100 00 0000 011111222333333332
Q ss_pred cccccccCCCceEEEEEeecCCCCccchHHHHHHhhhcCCCCCC
Q psy5156 174 WYFWKRSSSQISIKFLWCPSHVGISGNDQADTEAKKATSEPITN 217 (389)
Q Consensus 174 ~~~~~~~~~~~~i~~~wvp~H~g~~gNe~aD~~Ak~a~~~~~~~ 217 (389)
...+|+|+|||||+|++|||.||+|||+|+..|..+
T Consensus 110 --------~~~~V~~~wV~gH~g~~gNe~AD~LAk~aa~~~~~~ 145 (152)
T d1jl1a_ 110 --------GQHQIKWEWVKGHAGHPENERADELARAAAMNPTLE 145 (152)
T ss_dssp --------TTCEEEEEECCSSTTCHHHHHHHHHHHHHHHSCCBC
T ss_pred --------hcceeEEEEecccCCCccHHHHHHHHHHHHhCCCCC
Confidence 134899999999999999999999999999988554
No 4
>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=99.75 E-value=4.9e-18 Score=139.57 Aligned_cols=79 Identities=22% Similarity=0.174 Sum_probs=60.3
Q ss_pred hcCCCcEEEEEcCCccC-C-CeEEEEEEecCCEEEEEecCCCCchhHHhHHHHHHHHHHHHhcCCceEEEEcCCHHHHHH
Q psy5156 12 ENYKDFLKIYTDGSKDE-T-GVGCALIIPQLNVTKRFTLNKYSSIFHAELFSILQSLKNAKLLNIKKVLIISDSLSSFQA 89 (389)
Q Consensus 12 ~~~~~~~~IyTDGS~~~-~-~~G~avv~~~~~~~~~~~l~~~~t~~~AEl~AI~~AL~~a~~~~~~~i~I~sDSq~al~~ 89 (389)
++.++..++|||||+.. + ..|+|++..++.. ....+ ..+||++|||.||+.||+. ...++.|+|||++++++
T Consensus 3 ~Pi~~~~t~ytDGs~~~n~~~g~~g~~~~~~~~-~~~~~-~~~TNn~aEl~Avi~aL~~----~~~~v~I~TDS~yvi~~ 76 (110)
T d1s1ta1 3 EPIVGAETFYVDGAANRETKLGKAGYVTNRGRQ-KVVTL-TDTTNQKTELQAIYLALQD----SGLEVNIVTDSQYALGI 76 (110)
T ss_dssp SCCTTSEEEEEEEEEETTTTEEEEEEEETTSCE-EEEEE-SSCCHHHHHHHHHHHHHHH----SCSEEEEEECCHHHHHH
T ss_pred CCCCCCcEEEEeCCCCCCCCCcEEEEEEecCCe-EEEec-ccCcHHHHHHHHHHHHHHh----CCCeEEEEEehHHHHHH
Confidence 45677889999999873 3 3566666655432 33333 3679999999999999974 35789999999999999
Q ss_pred HhcCCCC
Q psy5156 90 ISNLYHP 96 (389)
Q Consensus 90 l~~~~~~ 96 (389)
+.++...
T Consensus 77 i~~~~~~ 83 (110)
T d1s1ta1 77 IQAQPDQ 83 (110)
T ss_dssp HHHCCSE
T ss_pred HhcCccc
Confidence 9988764
No 5
>d1zbfa1 c.55.3.1 (A:62-193) BH0863-like Ribonuclease H {Bacillus halodurans [TaxId: 86665]}
Probab=99.61 E-value=1.6e-16 Score=133.78 Aligned_cols=123 Identities=14% Similarity=0.010 Sum_probs=88.7
Q ss_pred EEEEcCCcc--CCCeEEEEEEecCCEEEEE-ecCCCCchhHHhHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHhcCCC
Q psy5156 19 KIYTDGSKD--ETGVGCALIIPQLNVTKRF-TLNKYSSIFHAELFSILQSLKNAKLLNIKKVLIISDSLSSFQAISNLYH 95 (389)
Q Consensus 19 ~IyTDGS~~--~~~~G~avv~~~~~~~~~~-~l~~~~t~~~AEl~AI~~AL~~a~~~~~~~i~I~sDSq~al~~l~~~~~ 95 (389)
.||||||+. ||.+|+|+|+...+....+ +.-+.+||++||++|++.||+.+.+.+ .++.|+|||++|++.+.++..
T Consensus 6 sIy~DGa~~GNPGp~g~g~v~~~~~~~~~~sg~~~~~TNN~aEl~A~i~aL~~~~~~~-~~i~I~tDS~yvi~wv~~~~~ 84 (132)
T d1zbfa1 6 SLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERN-SRKPIYSNSQTAIKWVKDKKA 84 (132)
T ss_dssp SEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEEEECHHHHHHHHHHHHHHHHHHTT-CCCCEEESCHHHHHHHHHTCC
T ss_pred eEEEeecCCCCCchheEEEEEEcCCEEEEEEcCcCccchHHHHHHHHHHHHHHhhcCC-ceEEEEeccHHHHHHHHhCce
Confidence 389999998 5668998888654432222 223578999999999999999998754 679999999999999988764
Q ss_pred CCccccccchhhHHHHHHHhhhHHHhhhhhhhhhcccchhhhhhccCCCCChhHHHHHHHHHhhhhhhhcccCCCCCCcc
Q psy5156 96 PNPLVKEIPHAELFSILQSLKNAELLNIKKVLIISDSLSSFQAISNLYHPNPLVKEIQETYSSAQISIKFLWCPSHPCWY 175 (389)
Q Consensus 96 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (389)
..... .+..+.++++.|.+.....+
T Consensus 85 kt~~~----------------------------------------~~vkN~~l~~~i~~a~~~lk--------------- 109 (132)
T d1zbfa1 85 KSTLV----------------------------------------RNEETALIWKLVDEAEEWLN--------------- 109 (132)
T ss_dssp CCCCC----------------------------------------CSTTTHHHHHHHHHHHHHHH---------------
T ss_pred ecCcC----------------------------------------CCcccHHHHHHHHHHHHHHH---------------
Confidence 43221 12233345555555433221
Q ss_pred cccccCCCceEEEEEeecCCCCccchHHH
Q psy5156 176 FWKRSSSQISIKFLWCPSHVGISGNDQAD 204 (389)
Q Consensus 176 ~~~~~~~~~~i~~~wvp~H~g~~gNe~aD 204 (389)
+..+.+.|+..|+..-||..||
T Consensus 110 -------~h~~~~~~~KW~~~~wG~i~AD 131 (132)
T d1zbfa1 110 -------THTYETPILKWQTDKWGEIKAD 131 (132)
T ss_dssp -------HCCCCCCEEECCHHHHCSCTTC
T ss_pred -------hCCcCceeEEecCcccccCCCC
Confidence 3478999999999999999988
No 6
>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=52.26 E-value=1.9 Score=32.79 Aligned_cols=62 Identities=26% Similarity=0.375 Sum_probs=48.6
Q ss_pred hhhHHHHHHHhhhHHHhhhhhhhhhcccchhhhhhccC--CCCChhHHHHHHHHHhhhhhhhcccCCCCCCcccccccCC
Q psy5156 105 HAELFSILQSLKNAELLNIKKVLIISDSLSSFQAISNL--YHPNPLVKEIQETYSSAQISIKFLWCPSHPCWYFWKRSSS 182 (389)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (389)
.+|+.+|+.||+. ..+++.|.|||..+++++.+. ....+++++|.+.+...
T Consensus 47 ~aEl~Avi~aL~~----~~~~v~I~TDS~yvi~~i~~~~~~~~~~l~~~il~~l~~~----------------------- 99 (110)
T d1s1ta1 47 KTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIEQLIKK----------------------- 99 (110)
T ss_dssp HHHHHHHHHHHHH----SCSEEEEEECCHHHHHHHHHCCSEESCHHHHHHHHHHHHC-----------------------
T ss_pred HHHHHHHHHHHHh----CCCeEEEEEehHHHHHHHhcCccccchHHHHHHHHHHhcC-----------------------
Confidence 5799999999863 567899999999999998773 44566777765555442
Q ss_pred CceEEEEEeecC
Q psy5156 183 QISIKFLWCPSH 194 (389)
Q Consensus 183 ~~~i~~~wvp~H 194 (389)
..|.|.|||||
T Consensus 100 -~~v~i~WVpgH 110 (110)
T d1s1ta1 100 -EKVYLAWVPAH 110 (110)
T ss_dssp -SEEEEEECCSS
T ss_pred -CceEEEEeCCC
Confidence 38999999999
No 7
>d2d30a1 c.97.1.1 (A:1-124) mono-domain cytidine deaminase {Bacillus anthracis [TaxId: 1392]}
Probab=37.98 E-value=29 Score=26.41 Aligned_cols=54 Identities=17% Similarity=0.209 Sum_probs=39.0
Q ss_pred CeEEEEEEecCCEEEEEecCCC--CchhHHhHHHHHHHHHHHHhcCCceEEEEcCCH
Q psy5156 30 GVGCALIIPQLNVTKRFTLNKY--SSIFHAELFSILQSLKNAKLLNIKKVLIISDSL 84 (389)
Q Consensus 30 ~~G~avv~~~~~~~~~~~l~~~--~t~~~AEl~AI~~AL~~a~~~~~~~i~I~sDSq 84 (389)
.+|+++...+|++..+...+.. ....-||-.||..|+..- ......+.|.+|+.
T Consensus 25 ~VGAal~~~~G~i~~G~NvEn~s~~~~~CAEr~Ai~~a~~~g-~~~~~~i~v~~~~~ 80 (124)
T d2d30a1 25 QVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSEG-DKEFVAIAIVADTK 80 (124)
T ss_dssp CEEEEEEETTCCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEEESCS
T ss_pred cEEEEEEeCCCCEEEEEeeccccCCcccCHHHHHHHHHHhcC-CceeEEEEEEcCCC
Confidence 5999999988888777665432 233579999999988742 23456788888864
No 8
>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=37.97 E-value=4.9 Score=30.63 Aligned_cols=35 Identities=29% Similarity=0.226 Sum_probs=28.1
Q ss_pred hhhHHHHHHHhhhHHHhhhhhhhhhcccchhhhhhccCC
Q psy5156 105 HAELFSILQSLKNAELLNIKKVLIISDSLSSFQAISNLY 143 (389)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 143 (389)
.+|+.+|+.+++. ..+++.|+|||..+++.+.+..
T Consensus 46 ~AEl~Ai~~al~~----~~~~i~I~tDS~~v~~~~~~~~ 80 (126)
T d1mu2a1 46 QAELEAFAMALTD----SGPKVNIIVDSQYVMGIVASQP 80 (126)
T ss_dssp HHHHHHHHHHHHT----SCSEEEEEESCHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcc----CCcceEEEechHHHHHHHhcCC
Confidence 5799999998753 5678999999998887776654
No 9
>d1r5ta_ c.97.1.1 (A:) mono-domain cytidine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=29.90 E-value=29 Score=27.05 Aligned_cols=55 Identities=24% Similarity=0.301 Sum_probs=37.5
Q ss_pred CeEEEEEEecCCEEEEEecCC--CCchhHHhHHHHHHHHHHHHhcCCceEEEEcCCH
Q psy5156 30 GVGCALIIPQLNVTKRFTLNK--YSSIFHAELFSILQSLKNAKLLNIKKVLIISDSL 84 (389)
Q Consensus 30 ~~G~avv~~~~~~~~~~~l~~--~~t~~~AEl~AI~~AL~~a~~~~~~~i~I~sDSq 84 (389)
.+|+++...++++..+..... .....-||-.||..|+..-.+....-+++..|+.
T Consensus 32 ~VGAAl~t~~G~I~~G~NvEnas~~~~lCAEr~Ai~~a~~~g~~~~~~~~vv~~~~~ 88 (141)
T d1r5ta_ 32 RVGCSILTNNDVIFTGANVENASYSNCICAERSAMIQVLMAGHRSGWKCMVICGDSE 88 (141)
T ss_dssp CEEEEEECTTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCSCCCEEEEEESCS
T ss_pred cEEEEEEeCCCCEEEEEeecccccccccCHHHHHHHHHHHhcCCccceEEEEeecCC
Confidence 589998888888777665542 2334679999999888654433345566666754
No 10
>d1zbfa1 c.55.3.1 (A:62-193) BH0863-like Ribonuclease H {Bacillus halodurans [TaxId: 86665]}
Probab=28.19 E-value=10 Score=29.63 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=28.0
Q ss_pred hhhHHHHHHHhhhHHHhhhhhhhhhcccchhhhhhccC
Q psy5156 105 HAELFSILQSLKNAELLNIKKVLIISDSLSSFQAISNL 142 (389)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 142 (389)
.+|+.+++.||+...-.+ .+++|.|||.=+.+.+++.
T Consensus 46 ~aEl~A~i~aL~~~~~~~-~~i~I~tDS~yvi~wv~~~ 82 (132)
T d1zbfa1 46 MGEFLAIVHGLRYLKERN-SRKPIYSNSQTAIKWVKDK 82 (132)
T ss_dssp HHHHHHHHHHHHHHHHTT-CCCCEEESCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCC-ceEEEEeccHHHHHHHHhC
Confidence 468999999987654444 4689999998877776554
No 11
>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=23.26 E-value=93 Score=20.22 Aligned_cols=64 Identities=11% Similarity=0.102 Sum_probs=37.5
Q ss_pred hhHHHHHHHhhcCC---CcEEEEEcCCccCCCeEEEEEEecCCEEEEEecCCCCchhHHhHHHHHHHHHHH
Q psy5156 2 LQNRFREILHENYK---DFLKIYTDGSKDETGVGCALIIPQLNVTKRFTLNKYSSIFHAELFSILQSLKNA 69 (389)
Q Consensus 2 ~~~~~~~~~~~~~~---~~~~IyTDGS~~~~~~G~avv~~~~~~~~~~~l~~~~t~~~AEl~AI~~AL~~a 69 (389)
|+..+.|+.+.... ....+-..|-..+...-+.+++.+ .. .. .+...|--.||..|...||+.+
T Consensus 2 ~Ks~LqE~~Qk~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~-~~-~~--~g~g~sKK~Aeq~AA~~aL~~L 68 (69)
T d1o0wa2 2 YKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNG-KT-IA--TGKGRTKKEAEKEAARIAYEKL 68 (69)
T ss_dssp HHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETT-EE-EE--EEEESSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCCCEEEEEEeeCCCCCceEEEEEEECC-EE-EE--EEEeCCHHHHHHHHHHHHHHHh
Confidence 56677787766532 222344445543444555555532 21 11 1234578899999999999875
No 12
>d2z3ga1 c.97.1.1 (A:2-124) Blasticidin-S deaminase {Aspergillus terreus [TaxId: 33178]}
Probab=22.95 E-value=47 Score=25.16 Aligned_cols=53 Identities=15% Similarity=0.127 Sum_probs=34.6
Q ss_pred CCeEEEEEEecCCEEEEEecCCCCchhHHhHHHHHHHHHHHHhcCCceEEEEcC
Q psy5156 29 TGVGCALIIPQLNVTKRFTLNKYSSIFHAELFSILQSLKNAKLLNIKKVLIISD 82 (389)
Q Consensus 29 ~~~G~avv~~~~~~~~~~~l~~~~t~~~AEl~AI~~AL~~a~~~~~~~i~I~sD 82 (389)
-.+|++++..+|++..+.......--.-||-.||..|+..-. .....+.+.+|
T Consensus 26 f~VGAa~l~~~G~i~~G~NvEN~s~glCAEr~Ai~~a~~~g~-~~i~~i~~v~~ 78 (123)
T d2z3ga1 26 YSVASAALSSDGRIFTGVNVYHFTGGPCAELVVLGTAAAAAA-GNLTCIVAIGN 78 (123)
T ss_dssp SCEEEEEEETTSCEEEEECCCCTTTCCCHHHHHHHHHHHTTC-CCEEEEEEEET
T ss_pred CCEEEEEEeCCCCEEEEEcccCCCCccchhhhHhhhhhhcCC-CceEEEEEEEc
Confidence 469999999888887776654332235899999998866321 12334555544
No 13
>d1uwza_ c.97.1.1 (A:) mono-domain cytidine deaminase {Bacillus subtilis [TaxId: 1423]}
Probab=21.75 E-value=70 Score=24.21 Aligned_cols=54 Identities=19% Similarity=0.275 Sum_probs=37.5
Q ss_pred CeEEEEEEecCCEEEEEecCC--CCchhHHhHHHHHHHHHHHHhcCCceEEEEcCCH
Q psy5156 30 GVGCALIIPQLNVTKRFTLNK--YSSIFHAELFSILQSLKNAKLLNIKKVLIISDSL 84 (389)
Q Consensus 30 ~~G~avv~~~~~~~~~~~l~~--~~t~~~AEl~AI~~AL~~a~~~~~~~i~I~sDSq 84 (389)
.+|+++...+|++..+..... ......||..||..|+..- ......+.|.+|+.
T Consensus 25 ~VGAa~~~~~G~i~~G~NvEnas~~~~~CAEr~Ai~~a~~~g-~~~~~~i~v~~~~~ 80 (130)
T d1uwza_ 25 QVGAALLTKDGKVYRGCNIENAAYSMCNCAEATALFKAVSEG-DTEFQMLAVAADTP 80 (130)
T ss_dssp CEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHHT-CCCEEEEEEEESCS
T ss_pred cEEEEEEeCCCCEEEEeeeccccccccccceehhhHHHHHhh-hcceeeEEEEcCCC
Confidence 599999988888877766542 2344579999998876643 22345677777763
Done!