BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5157
(129 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N6R|B Chain B, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|D Chain D, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|F Chain F, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|H Chain H, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|J Chain J, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|L Chain L, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
Length = 531
Score = 84.3 bits (207), Expect = 1e-17, Method: Composition-based stats.
Identities = 36/65 (55%), Positives = 49/65 (75%)
Query: 45 PVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVANQP 104
P LD +VP + TPYDM ++I+ + DE +F+EIQ ++AKNII GF R+ G +VG+VANQP
Sbjct: 288 PSLDTLVPDNPNTPYDMKELIHKLADEGDFYEIQEEFAKNIITGFIRLEGRTVGVVANQP 347
Query: 105 KVAAG 109
V AG
Sbjct: 348 LVLAG 352
>pdb|3IB9|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422l
pdb|3IB9|B Chain B, Propionyl-Coa Carboxylase Beta Subunit, D422l
Length = 530
Score = 81.6 bits (200), Expect = 1e-16, Method: Composition-based stats.
Identities = 37/70 (52%), Positives = 46/70 (65%)
Query: 40 MTQDVPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGI 99
+T + LD IVP PYDMH +I +V+D+ EFFE QP +A NI+ GF R+ G VGI
Sbjct: 277 VTDEDAELDTIVPDSANQPYDMHSVIEHVLDDAEFFETQPLFAPNILTGFGRVEGRPVGI 336
Query: 100 VANQPKVAAG 109
VANQP AG
Sbjct: 337 VANQPMQFAG 346
>pdb|3IAV|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422v
pdb|3IAV|B Chain B, Propionyl-Coa Carboxylase Beta Subunit, D422v
Length = 530
Score = 81.6 bits (200), Expect = 1e-16, Method: Composition-based stats.
Identities = 37/70 (52%), Positives = 46/70 (65%)
Query: 40 MTQDVPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGI 99
+T + LD IVP PYDMH +I +V+D+ EFFE QP +A NI+ GF R+ G VGI
Sbjct: 277 VTDEDAELDTIVPDSANQPYDMHSVIEHVLDDAEFFETQPLFAPNILTGFGRVEGRPVGI 336
Query: 100 VANQPKVAAG 109
VANQP AG
Sbjct: 337 VANQPMQFAG 346
>pdb|3IBB|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|B Chain B, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|C Chain C, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|D Chain D, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|E Chain E, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|F Chain F, Propionyl-Coa Carboxylase Beta Subunit, D422a
Length = 530
Score = 81.6 bits (200), Expect = 1e-16, Method: Composition-based stats.
Identities = 37/70 (52%), Positives = 46/70 (65%)
Query: 40 MTQDVPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGI 99
+T + LD IVP PYDMH +I +V+D+ EFFE QP +A NI+ GF R+ G VGI
Sbjct: 277 VTDEDAELDTIVPDSANQPYDMHSVIEHVLDDAEFFETQPLFAPNILTGFGRVEGRPVGI 336
Query: 100 VANQPKVAAG 109
VANQP AG
Sbjct: 337 VANQPMQFAG 346
>pdb|1XNW|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|B Chain B, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|C Chain C, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|D Chain D, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|E Chain E, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|F Chain F, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
Length = 530
Score = 81.6 bits (200), Expect = 1e-16, Method: Composition-based stats.
Identities = 37/70 (52%), Positives = 46/70 (65%)
Query: 40 MTQDVPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGI 99
+T + LD IVP PYDMH +I +V+D+ EFFE QP +A NI+ GF R+ G VGI
Sbjct: 277 VTDEDAELDTIVPDSANQPYDMHSVIEHVLDDAEFFETQPLFAPNILTGFGRVEGRPVGI 336
Query: 100 VANQPKVAAG 109
VANQP AG
Sbjct: 337 VANQPMQFAG 346
>pdb|1XNV|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #1
pdb|1XNV|B Chain B, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #1
pdb|1XNY|A Chain A, Biotin And Propionyl-coa Bound To Acyl-coa Carboxylase
Beta Subunit From S. Coelicolor (pccb)
pdb|1XNY|B Chain B, Biotin And Propionyl-coa Bound To Acyl-coa Carboxylase
Beta Subunit From S. Coelicolor (pccb)
pdb|1XO6|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|B Chain B, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|C Chain C, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|D Chain D, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|E Chain E, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|F Chain F, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
Length = 530
Score = 81.6 bits (200), Expect = 1e-16, Method: Composition-based stats.
Identities = 37/70 (52%), Positives = 46/70 (65%)
Query: 40 MTQDVPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGI 99
+T + LD IVP PYDMH +I +V+D+ EFFE QP +A NI+ GF R+ G VGI
Sbjct: 277 VTDEDAELDTIVPDSANQPYDMHSVIEHVLDDAEFFETQPLFAPNILTGFGRVEGRPVGI 336
Query: 100 VANQPKVAAG 109
VANQP AG
Sbjct: 337 VANQPMQFAG 346
>pdb|3MFM|C Chain C, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|F Chain F, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|A Chain A, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|B Chain B, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|D Chain D, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|E Chain E, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
Length = 530
Score = 81.3 bits (199), Expect = 1e-16, Method: Composition-based stats.
Identities = 37/70 (52%), Positives = 46/70 (65%)
Query: 40 MTQDVPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGI 99
+T + LD IVP PYDMH +I +V+D+ EFFE QP +A NI+ GF R+ G VGI
Sbjct: 277 VTDEDAELDTIVPDSANQPYDMHSVIEHVLDDAEFFETQPLFAPNILTGFGRVEGRPVGI 336
Query: 100 VANQPKVAAG 109
VANQP AG
Sbjct: 337 VANQPMQFAG 346
>pdb|2BZR|A Chain A, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|B Chain B, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|C Chain C, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|D Chain D, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|E Chain E, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|F Chain F, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
Length = 548
Score = 79.0 bits (193), Expect = 7e-16, Method: Composition-based stats.
Identities = 38/72 (52%), Positives = 50/72 (69%), Gaps = 2/72 (2%)
Query: 38 NLMTQDVPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSV 97
NL +D+ LD ++P PYDMH++I ++D+ EF EIQ YA+NI+VGF RI+G V
Sbjct: 292 NLTDEDLE-LDTLIPDSPNQPYDMHEVITRLLDD-EFLEIQAGYAQNIVVGFGRIDGRPV 349
Query: 98 GIVANQPKVAAG 109
GIVANQP AG
Sbjct: 350 GIVANQPTHFAG 361
>pdb|2A7S|A Chain A, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|B Chain B, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|C Chain C, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|D Chain D, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|E Chain E, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|F Chain F, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
Length = 548
Score = 79.0 bits (193), Expect = 7e-16, Method: Composition-based stats.
Identities = 38/72 (52%), Positives = 50/72 (69%), Gaps = 2/72 (2%)
Query: 38 NLMTQDVPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSV 97
NL +D+ LD ++P PYDMH++I ++D+ EF EIQ YA+NI+VGF RI+G V
Sbjct: 292 NLTDEDLE-LDTLIPDSPNQPYDMHEVITRLLDD-EFLEIQAGYAQNIVVGFGRIDGRPV 349
Query: 98 GIVANQPKVAAG 109
GIVANQP AG
Sbjct: 350 GIVANQPTHFAG 361
>pdb|1VRG|A Chain A, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|B Chain B, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|C Chain C, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|D Chain D, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|E Chain E, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|F Chain F, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
Length = 527
Score = 78.6 bits (192), Expect = 8e-16, Method: Composition-based stats.
Identities = 34/61 (55%), Positives = 45/61 (73%)
Query: 49 NIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVANQPKVAA 108
+I+P + YD+ +I V+D EFFE+QP +AKNI++GFARI G +VGIVANQP V A
Sbjct: 284 DILPDNPNKGYDVRDVIKRVVDHGEFFEVQPYFAKNIVIGFARIQGKTVGIVANQPSVLA 343
Query: 109 G 109
G
Sbjct: 344 G 344
>pdb|1X0U|A Chain A, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|B Chain B, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|C Chain C, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|D Chain D, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|E Chain E, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|F Chain F, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
Length = 522
Score = 77.4 bits (189), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/68 (50%), Positives = 46/68 (67%)
Query: 42 QDVPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVA 101
+D ++ IVP D PY+M +IIY ++D EF E+ +A+NIIVGFARI G+ VGIVA
Sbjct: 272 RDATGVEQIVPNDAAKPYNMREIIYKIVDNGEFLEVHKHWAQNIIVGFARIAGNVVGIVA 331
Query: 102 NQPKVAAG 109
N P+ G
Sbjct: 332 NNPEEFGG 339
>pdb|1ON3|A Chain A, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|B Chain B, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|C Chain C, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|D Chain D, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|E Chain E, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON3|F Chain F, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (With
Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
pdb|1ON9|A Chain A, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|B Chain B, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|C Chain C, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|D Chain D, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|E Chain E, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
pdb|1ON9|F Chain F, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
And Substrate Binding To A Multienzyme Core (with
Hydrolyzed Methylmalonyl-coenzyme A Bound)
Length = 523
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%)
Query: 47 LDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVANQPKV 106
L +IVP D YD+ +I ++D ++ E++ YA N++ FAR+NG SVGIVANQP V
Sbjct: 278 LRDIVPIDGKKGYDVRDVIAKIVDWGDYLEVKAGYATNLVTAFARVNGRSVGIVANQPSV 337
Query: 107 AAG 109
+G
Sbjct: 338 MSG 340
>pdb|3GF3|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaconyl-Coa
pdb|3GF7|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Apoprotein
pdb|3GLM|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|B Chain B, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|C Chain C, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|D Chain D, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GMA|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaryl-Coa
pdb|3GMA|B Chain B, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaryl-Coa
Length = 588
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 47 LDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVAN 102
L +I+P + PYD++++I + D EF E + Y ++ G A++NG VG++AN
Sbjct: 312 LYSIIPMNQKRPYDIYEVIARLFDNSEFSEYKKGYGPEMVTGLAKVNGLLVGVIAN 367
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 84 NIIVGFARINGHSVGIVANQPKVAAGKW 111
NI+ G R++G V IVA+ K AG W
Sbjct: 95 NIVNGLGRVDGKWVYIVASDNKKMAGAW 122
>pdb|3U9R|B Chain B, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc), Beta Subunit
pdb|3U9S|B Chain B, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|D Chain D, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|F Chain F, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|H Chain H, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|J Chain J, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|L Chain L, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9T|B Chain B, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Free Enzyme
Length = 555
Score = 49.3 bits (116), Expect = 6e-07, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 35/56 (62%)
Query: 47 LDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVAN 102
L ++P D+ PYD+ ++I ++D EF E + + ++ GFA ++G+ + I+AN
Sbjct: 309 LYGVIPADSKQPYDVREVIARLVDGSEFDEFKALFGTTLVCGFAHLHGYPIAILAN 364
>pdb|1PIX|A Chain A, Crystal Structure Of The Carboxyltransferase Subunit Of
The Bacterial Ion Pump Glutaconyl-Coenzyme A
Decarboxylase
pdb|1PIX|B Chain B, Crystal Structure Of The Carboxyltransferase Subunit Of
The Bacterial Ion Pump Glutaconyl-Coenzyme A
Decarboxylase
Length = 587
Score = 45.1 bits (105), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 47 LDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVAN 102
L ++VP + YD++ +I + D E E + Y ++ G A++NG VG+VAN
Sbjct: 309 LYSMVPLNDKRAYDIYNVIARLFDNSELHEYKKGYGPEMVTGLAKVNGLLVGVVAN 364
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 79 PKYAKN----IIVGFARINGHSVGIVANQPKVAAGKW 111
P+ KN I+ G R+NG +VA+ K AG W
Sbjct: 85 PQGNKNGSVAIVKGLGRVNGKWCVVVASDNKKLAGAW 121
>pdb|1W2X|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Cp-640186
pdb|1W2X|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Cp-640186
pdb|1W2X|C Chain C, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Cp-640186
pdb|3K8X|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With
Tepraloxydim
pdb|3K8X|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With
Tepraloxydim
pdb|3K8X|C Chain C, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With
Tepraloxydim
Length = 758
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 13/71 (18%)
Query: 41 TQDVPVLDNIVPYDTTTPYDMHQII----------YNVIDEREFFEIQPKYAKNIIVGFA 90
T D PV + P + T YD+ +I Y + D+ FFE +AK ++VG A
Sbjct: 351 TWDRPV--DFTPTNDET-YDVRWMIEGRETESGFEYGLFDKGSFFETLSGWAKGVVVGRA 407
Query: 91 RINGHSVGIVA 101
R+ G +G++
Sbjct: 408 RLGGIPLGVIG 418
>pdb|3TV5|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 1
pdb|3TV5|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 1
pdb|3TV5|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 1
pdb|3TVU|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 3
pdb|3TVU|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 3
pdb|3TVU|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 3
pdb|3TVW|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 4
pdb|3TVW|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 4
pdb|3TVW|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 4
pdb|3TZ3|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 2
pdb|3TZ3|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 2
pdb|3TZ3|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 2
Length = 769
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 13/71 (18%)
Query: 41 TQDVPVLDNIVPYDTTTPYDMHQII----------YNVIDEREFFEIQPKYAKNIIVGFA 90
T D PV + P + T YD+ +I Y + D+ FFE +AK ++VG A
Sbjct: 354 TWDRPV--DFTPTNDET-YDVRWMIEGRETESGFEYGLFDKGSFFETLSGWAKGVVVGRA 410
Query: 91 RINGHSVGIVA 101
R+ G +G++
Sbjct: 411 RLGGIPLGVIG 421
>pdb|3H0J|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 2
pdb|3H0J|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 2
pdb|3H0J|C Chain C, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 2
pdb|3H0S|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 7
pdb|3H0S|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 7
pdb|3H0S|C Chain C, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 7
pdb|3H0Q|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 3
pdb|3H0Q|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 3
pdb|3H0Q|C Chain C, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 3
Length = 769
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 13/71 (18%)
Query: 41 TQDVPVLDNIVPYDTTTPYDMHQII----------YNVIDEREFFEIQPKYAKNIIVGFA 90
T D PV + P + T YD+ +I Y + D+ FFE +AK ++VG A
Sbjct: 354 TWDRPV--DFTPTNDET-YDVRWMIEGRETESGFEYGLFDKGSFFETLSGWAKGVVVGRA 410
Query: 91 RINGHSVGIVA 101
R+ G +G++
Sbjct: 411 RLGGIPLGVIG 421
>pdb|3PGQ|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of S.
Cerevisiae Acetyl Coa Carboxylase In Complex With
Pinoxaden
pdb|3PGQ|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of S.
Cerevisiae Acetyl Coa Carboxylase In Complex With
Pinoxaden
pdb|3PGQ|C Chain C, Crystal Structure Of The Carboxyltransferase Domain Of S.
Cerevisiae Acetyl Coa Carboxylase In Complex With
Pinoxaden
Length = 764
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 13/71 (18%)
Query: 41 TQDVPVLDNIVPYDTTTPYDMHQII----------YNVIDEREFFEIQPKYAKNIIVGFA 90
T D PV + P + T YD+ +I Y + D+ FFE +AK ++VG A
Sbjct: 351 TWDRPV--DFTPTNDET-YDVRWMIEGRETESGFEYGLFDKGSFFETLSGWAKGVVVGRA 407
Query: 91 RINGHSVGIVA 101
R+ G +G++
Sbjct: 408 RLGGIPLGVIG 418
>pdb|1UYR|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain In
Complex With Inhibitor Diclofop
pdb|1UYR|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain In
Complex With Inhibitor Diclofop
pdb|1UYT|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1UYT|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1UYT|C Chain C, Acetyl-Coa Carboxylase Carboxyltransferase Domain
Length = 737
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 13/71 (18%)
Query: 41 TQDVPVLDNIVPYDTTTPYDMHQII----------YNVIDEREFFEIQPKYAKNIIVGFA 90
T D PV + P + T YD+ +I Y + D+ FFE +AK ++VG A
Sbjct: 345 TWDRPV--DFTPTNDET-YDVRWMIEGRETESGFEYGLFDKGSFFETLSGWAKGVVVGRA 401
Query: 91 RINGHSVGIVA 101
R+ G +G++
Sbjct: 402 RLGGIPLGVIG 412
>pdb|1UYV|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain L1705i
V1967i Mutant
pdb|1UYV|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain L1705i
V1967i Mutant
pdb|1UYV|C Chain C, Acetyl-Coa Carboxylase Carboxyltransferase Domain L1705i
V1967i Mutant
Length = 737
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 13/71 (18%)
Query: 41 TQDVPVLDNIVPYDTTTPYDMHQII----------YNVIDEREFFEIQPKYAKNIIVGFA 90
T D PV + P + T YD+ +I Y + D+ FFE +AK ++VG A
Sbjct: 345 TWDRPV--DFTPTNDET-YDVRWMIEGRETESGFEYGLFDKGSFFETLSGWAKGVVVGRA 401
Query: 91 RINGHSVGIVA 101
R+ G +G++
Sbjct: 402 RLGGIPLGVIG 412
>pdb|4ASI|A Chain A, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|B Chain B, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|C Chain C, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|D Chain D, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|E Chain E, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|F Chain F, Crystal Structure Of Human Acaca C-Terminal Domain
Length = 769
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 20/78 (25%)
Query: 44 VPVLDNIVPYD-------TTTPYDMH-------------QIIYNVIDEREFFEIQPKYAK 83
VP+L++ P D T TPYD Q + D F EI +A+
Sbjct: 341 VPLLNSKDPIDRIIEFVPTKTPYDPRWMLAGRPHPTQKGQWLSGFFDYGSFSEIMQPWAQ 400
Query: 84 NIIVGFARINGHSVGIVA 101
++VG AR+ G VG+VA
Sbjct: 401 TVVVGRARLGGIPVGVVA 418
>pdb|1UYS|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain In
Complex With Inhibitor Haloxyfop
pdb|1UYS|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain In
Complex With Inhibitor Haloxyfop
pdb|1UYS|C Chain C, Acetyl-Coa Carboxylase Carboxyltransferase Domain In
Complex With Inhibitor Haloxyfop
Length = 737
Score = 32.7 bits (73), Expect = 0.048, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 66 YNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVANQPK 105
Y + D+ FFE +AK ++VG AR+ G +G++ + +
Sbjct: 377 YGLFDKGSFFETLSGWAKGVVVGRARLGGIPLGVIGVETR 416
>pdb|1OD2|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1OD2|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1OD4|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1OD4|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1OD4|C Chain C, Acetyl-Coa Carboxylase Carboxyltransferase Domain
Length = 805
Score = 32.7 bits (73), Expect = 0.048, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 66 YNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVANQPK 105
Y + D+ FFE +AK ++VG AR+ G +G++ + +
Sbjct: 430 YGLFDKGSFFETLSGWAKGVVVGRARLGGIPLGVIGVETR 469
>pdb|2X24|A Chain A, Bovine Acc2 Ct Domain In Complex With Inhibitor
pdb|2X24|B Chain B, Bovine Acc2 Ct Domain In Complex With Inhibitor
Length = 793
Score = 29.6 bits (65), Expect = 0.45, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 70 DEREFFEIQPKYAKNIIVGFARINGHSVGIVANQPK 105
D+ F EI +A+ ++ G AR+ G VG++A + +
Sbjct: 402 DQGSFKEIMVPWAQTVVTGRARLGGIPVGVIAAETR 437
>pdb|3TDC|A Chain A, Crystal Structure Of Human Acetyl-Coa Carboxylase 2
Length = 762
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 70 DEREFFEIQPKYAKNIIVGFARINGHSVGIVA 101
D F EI +A+ ++ G AR+ G VG++A
Sbjct: 378 DHGSFKEIMAPWAQTVVTGRARLGGIPVGVIA 409
>pdb|3FF6|A Chain A, Human Acc2 Ct Domain With Cp-640186
pdb|3FF6|B Chain B, Human Acc2 Ct Domain With Cp-640186
pdb|3FF6|C Chain C, Human Acc2 Ct Domain With Cp-640186
pdb|3FF6|D Chain D, Human Acc2 Ct Domain With Cp-640186
Length = 760
Score = 29.6 bits (65), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 70 DEREFFEIQPKYAKNIIVGFARINGHSVGIVA 101
D F EI +A+ ++ G AR+ G VG++A
Sbjct: 376 DHGSFKEIMAPWAQTVVTGRARLGGIPVGVIA 407
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,773,025
Number of Sequences: 62578
Number of extensions: 144882
Number of successful extensions: 347
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 314
Number of HSP's gapped (non-prelim): 31
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)