BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5157
(129 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P79384|PCCB_PIG Propionyl-CoA carboxylase beta chain, mitochondrial OS=Sus scrofa
GN=PCCB PE=2 SV=1
Length = 539
Score = 102 bits (253), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 55/66 (83%)
Query: 44 VPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVANQ 103
VP LD +VP ++T YDM IIY+++DER+FFEI P YAKNIIVGFAR+NG +VGIV NQ
Sbjct: 299 VPELDTVVPLESTRAYDMVDIIYSIVDERDFFEIMPNYAKNIIVGFARMNGRTVGIVGNQ 358
Query: 104 PKVAAG 109
PKVA+G
Sbjct: 359 PKVASG 364
>sp|P05166|PCCB_HUMAN Propionyl-CoA carboxylase beta chain, mitochondrial OS=Homo sapiens
GN=PCCB PE=1 SV=3
Length = 539
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 55/66 (83%)
Query: 44 VPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVANQ 103
VP LD IVP ++T Y+M II++V+DEREFFEI P YAKNIIVGFAR+NG +VGIV NQ
Sbjct: 299 VPELDTIVPLESTKAYNMVDIIHSVVDEREFFEIMPNYAKNIIVGFARMNGRTVGIVGNQ 358
Query: 104 PKVAAG 109
PKVA+G
Sbjct: 359 PKVASG 364
>sp|Q2TBR0|PCCB_BOVIN Propionyl-CoA carboxylase beta chain, mitochondrial OS=Bos taurus
GN=PCCB PE=2 SV=1
Length = 539
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 54/66 (81%)
Query: 44 VPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVANQ 103
VP LD IVP ++T Y+M II+ V+DEREFFEI P YAKNIIVGFAR+NG +VGIV NQ
Sbjct: 299 VPELDTIVPLESTKAYNMVDIIHAVVDEREFFEIMPNYAKNIIVGFARMNGRTVGIVGNQ 358
Query: 104 PKVAAG 109
PKVA+G
Sbjct: 359 PKVASG 364
>sp|Q99MN9|PCCB_MOUSE Propionyl-CoA carboxylase beta chain, mitochondrial OS=Mus musculus
GN=Pccb PE=1 SV=2
Length = 541
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 53/66 (80%)
Query: 44 VPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVANQ 103
VP LD +VP +++ Y+M II+ VIDEREFFEI P YAKNI+VGFAR+NG +VGIV NQ
Sbjct: 301 VPELDTVVPLESSKAYNMLDIIHAVIDEREFFEIMPSYAKNIVVGFARMNGRTVGIVGNQ 360
Query: 104 PKVAAG 109
P VA+G
Sbjct: 361 PNVASG 366
>sp|P07633|PCCB_RAT Propionyl-CoA carboxylase beta chain, mitochondrial OS=Rattus
norvegicus GN=Pccb PE=2 SV=1
Length = 541
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 42/66 (63%), Positives = 53/66 (80%)
Query: 44 VPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVANQ 103
VP LD +VP +++ Y+M II+ VIDEREFFEI P YAKNI++GFAR+NG +VGIV NQ
Sbjct: 301 VPELDTVVPLESSKAYNMLDIIHAVIDEREFFEIMPNYAKNIVIGFARMNGRTVGIVGNQ 360
Query: 104 PKVAAG 109
P VA+G
Sbjct: 361 PNVASG 366
>sp|P54541|PCCB_BACSU Putative propionyl-CoA carboxylase beta chain OS=Bacillus subtilis
(strain 168) GN=yqjD PE=3 SV=2
Length = 507
Score = 85.1 bits (209), Expect = 1e-16, Method: Composition-based stats.
Identities = 36/68 (52%), Positives = 51/68 (75%)
Query: 45 PVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVANQP 104
P+L+ +VP DTT PYD+ ++I + D + FFEIQP +AKNI++GFAR+ ++GIVA+QP
Sbjct: 260 PLLNRLVPADTTKPYDVRKVIRELADPQSFFEIQPFFAKNIVIGFARLGEKAIGIVASQP 319
Query: 105 KVAAGKWT 112
K AG T
Sbjct: 320 KHLAGSLT 327
>sp|P96885|PCC5_MYCTU Probable propionyl-CoA carboxylase beta chain 5 OS=Mycobacterium
tuberculosis GN=accD5 PE=1 SV=1
Length = 548
Score = 79.0 bits (193), Expect = 9e-15, Method: Composition-based stats.
Identities = 38/72 (52%), Positives = 50/72 (69%), Gaps = 2/72 (2%)
Query: 38 NLMTQDVPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSV 97
NL +D+ LD ++P PYDMH++I ++D+ EF EIQ YA+NI+VGF RI+G V
Sbjct: 292 NLTDEDLE-LDTLIPDSPNQPYDMHEVITRLLDD-EFLEIQAGYAQNIVVGFGRIDGRPV 349
Query: 98 GIVANQPKVAAG 109
GIVANQP AG
Sbjct: 350 GIVANQPTHFAG 361
>sp|O31825|YNGE_BACSU Uncharacterized carboxylase YngE OS=Bacillus subtilis (strain 168)
GN=yngE PE=3 SV=2
Length = 511
Score = 76.3 bits (186), Expect = 5e-14, Method: Composition-based stats.
Identities = 32/63 (50%), Positives = 44/63 (69%)
Query: 47 LDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVANQPKV 106
L +++P + P+DMH++I VIDE FFEI+ +A ++ G ARI+G VGIVANQPKV
Sbjct: 265 LADVIPQNQNAPFDMHELIERVIDEDSFFEIKALFAPELLTGLARIHGQPVGIVANQPKV 324
Query: 107 AAG 109
G
Sbjct: 325 KGG 327
>sp|P53002|PCCB_MYCLE Probable propionyl-CoA carboxylase beta chain 5 OS=Mycobacterium
leprae (strain TN) GN=accD5 PE=3 SV=1
Length = 549
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 38 NLMTQDVPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSV 97
NL +D+ LD ++P PYDMH+++ ++DE EF E+Q YA NI+VG RI+ V
Sbjct: 292 NLTAKDLE-LDTLIPDSPNQPYDMHEVVTRLLDEEEFLEVQAGYATNIVVGLGRIDDRPV 350
Query: 98 GIVANQPKVAAG 109
GIVANQP AG
Sbjct: 351 GIVANQPIQFAG 362
>sp|P53003|PCCB_SACEN Propionyl-CoA carboxylase beta chain OS=Saccharopolyspora erythraea
(strain NRRL 23338) GN=pccB PE=3 SV=2
Length = 546
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 41/63 (65%)
Query: 47 LDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVANQPKV 106
LD +VP PYDM ++I ++DE EF E+ +A N++ GF RI G SVG+VANQP
Sbjct: 297 LDALVPDSPNQPYDMREVITRLVDEGEFLEVSALFAPNMLCGFGRIEGASVGVVANQPMQ 356
Query: 107 AAG 109
AG
Sbjct: 357 LAG 359
>sp|Q8GBW6|12S_PROFR Methylmalonyl-CoA carboxyltransferase 12S subunit
OS=Propionibacterium freudenreichii subsp. shermanii
PE=1 SV=3
Length = 611
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%)
Query: 47 LDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVANQPKV 106
L +IVP D YD+ +I ++D ++ E++ YA N++ FAR+NG SVGIVANQP V
Sbjct: 279 LRDIVPIDGKKGYDVRDVIAKIVDWGDYLEVKAGYATNLVTAFARVNGRSVGIVANQPSV 338
Query: 107 AAG 109
+G
Sbjct: 339 MSG 341
>sp|Q9LDD8|MCCB_ARATH Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial
OS=Arabidopsis thaliana GN=MCCB PE=2 SV=1
Length = 587
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 43 DVPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVAN 102
D+ L +I P D +D+ II ++D EF E + +Y ++ GFARI G +VGI+ N
Sbjct: 337 DINELRSIAPVDHKQQFDVRSIIARIVDGSEFDEFKKQYGTTLVTGFARIYGQTVGIIGN 396
>sp|Q8T2J9|MCCB_DICDI Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial
OS=Dictyostelium discoideum GN=mccb PE=3 SV=2
Length = 588
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 19 NQNRSRQSRGIAEQTNSHLNLMTQDVPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQ 78
N NR +Q + +T L ++ L IVP D +D+ ++I ++D F E +
Sbjct: 316 NLNRKKQPSPVITETEEPLYPTSE----LAGIVPSDLKKNFDIRKVIARLVDGSRFDEFK 371
Query: 79 PKYAKNIIVGFARINGHSVGIVAN 102
Y +I GFAR++G VGI+AN
Sbjct: 372 ELYGTTLICGFARVHGMPVGIIAN 395
>sp|Q06101|PCCB_RHOER Propionyl-CoA carboxylase beta chain OS=Rhodococcus erythropolis
GN=pccB PE=3 SV=1
Length = 476
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 47 LDNIVPYDTTTPYDMHQIIYNVID----EREFFEIQPKYAKNIIVGFARINGHSVGIVAN 102
L ++P YD+ I++ ++D E F E+Q YA++I+ GF R+ G +VG++AN
Sbjct: 231 LRAMMPASAKRAYDVRPIVHEMLDNVEGESSFEELQGNYARSIVTGFGRMAGRTVGVIAN 290
Query: 103 QP 104
P
Sbjct: 291 NP 292
>sp|Q9V9A7|MCCB_DROME Probable methylcrotonoyl-CoA carboxylase beta chain, mitochondrial
OS=Drosophila melanogaster GN=l(2)04524 PE=2 SV=1
Length = 578
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 43 DVPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVAN 102
D L IV + T +D+ ++I ++D F E + Y + ++ GFA++ GH+VGIV N
Sbjct: 328 DAEELYGIVGPNLTKSFDVREVIARIVDGSRFTEFKKLYGETLVCGFAKLYGHTVGIVGN 387
>sp|P34385|MCCB_CAEEL Probable methylcrotonoyl-CoA carboxylase beta chain, mitochondrial
OS=Caenorhabditis elegans GN=F02A9.4 PE=2 SV=1
Length = 608
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 50 IVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVAN 102
IV + YD+ ++I ++D F E + +Y + ++ GFA I G VGI+AN
Sbjct: 365 IVGSNLKKTYDVREVIARIVDGSRFHEFKERYGETLVTGFATIYGQRVGILAN 417
>sp|Q06700|GCDA_ACIFV Glutaconyl-CoA decarboxylase subunit alpha OS=Acidaminococcus
fermentans (strain ATCC 25085 / DSM 20731 / VR4) GN=gcdA
PE=1 SV=1
Length = 587
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 47 LDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVAN 102
L ++VP + YD++ +I + D E E + Y ++ G A++NG VG+VAN
Sbjct: 309 LYSMVPLNDKRAYDIYNVIARLFDNSELHEYKKGYGPEMVTGLAKVNGLLVGVVAN 364
>sp|P63407|PCC6_MYCTU Probable propionyl-CoA carboxylase beta chain 6 OS=Mycobacterium
tuberculosis GN=accD6 PE=3 SV=1
Length = 473
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 50 IVPYDTTTPYDMHQIIYNVID-EREFFEIQPKYAKNIIVGFARINGHSVGIVANQP 104
++P + YD+ I+ ++D + F E Q +A +++VG R++G +VG++AN P
Sbjct: 233 LLPESSRRAYDVRPIVTAILDADTPFDEFQANWAPSMVVGLGRLSGRTVGVLANNP 288
>sp|P63408|PCC6_MYCBO Probable propionyl-CoA carboxylase beta chain 6 OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) GN=accD6 PE=3
SV=1
Length = 473
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 50 IVPYDTTTPYDMHQIIYNVID-EREFFEIQPKYAKNIIVGFARINGHSVGIVANQP 104
++P + YD+ I+ ++D + F E Q +A +++VG R++G +VG++AN P
Sbjct: 233 LLPESSRRAYDVRPIVTAILDADTPFDEFQANWAPSMVVGLGRLSGRTVGVLANNP 288
>sp|Q9HCC0|MCCB_HUMAN Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Homo
sapiens GN=MCCC2 PE=1 SV=1
Length = 563
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 47 LDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVAN 102
L IV + +D+ ++I ++D F E + Y ++ GFARI G+ VGIV N
Sbjct: 317 LYGIVGANLKRSFDVREVIARIVDGSRFTEFKAFYGDTLVTGFARIFGYPVGIVGN 372
>sp|Q5XIT9|MCCB_RAT Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Rattus
norvegicus GN=Mccc2 PE=2 SV=1
Length = 563
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 47 LDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVAN 102
L IV + +D+ ++I ++D F E + Y ++ GFARI G+ VGI+ N
Sbjct: 317 LYGIVGANLKRSFDVREVIARIVDGSRFNEFKALYGDTLVTGFARIFGYPVGIIGN 372
>sp|Q3ULD5|MCCB_MOUSE Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Mus
musculus GN=Mccc2 PE=2 SV=1
Length = 563
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 47 LDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVAN 102
L IV + +D+ ++I ++D F E + Y ++ GFARI G+ VGI+ N
Sbjct: 317 LYGIVGANLKRSFDVREVIARIVDGSRFNEFKALYGDTLVTGFARIFGYPVGIIGN 372
>sp|P32874|HFA1_YEAST Acetyl-CoA carboxylase, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=HFA1 PE=1 SV=2
Length = 2273
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 67 NVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVANQPK 105
+ D+ FFE +AK +IVG AR+ G VG++A + K
Sbjct: 1905 GLFDKDSFFETLSGWAKGVIVGRARLGGIPVGVIAVETK 1943
>sp|C8ZF72|HFA1_YEAS8 Acetyl-CoA carboxylase, mitochondrial OS=Saccharomyces cerevisiae
(strain Lalvin EC1118 / Prise de mousse) GN=HFA1 PE=3
SV=2
Length = 2273
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 67 NVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVANQPK 105
+ D+ FFE +AK +IVG AR+ G VG++A + K
Sbjct: 1905 GLFDKDSFFETLSGWAKGVIVGRARLGGIPVGVIAVETK 1943
>sp|B3LM95|HFA1_YEAS1 Acetyl-CoA carboxylase, mitochondrial OS=Saccharomyces cerevisiae
(strain RM11-1a) GN=HFA1 PE=3 SV=2
Length = 2273
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 67 NVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVANQPK 105
+ D+ FFE +AK +IVG AR+ G VG++A + K
Sbjct: 1905 GLFDKDSFFETLSGWAKGVIVGRARLGGIPVGVIAVETK 1943
>sp|C7GRE4|HFA1_YEAS2 Acetyl-CoA carboxylase, mitochondrial OS=Saccharomyces cerevisiae
(strain JAY291) GN=HFA1 PE=3 SV=2
Length = 2273
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 67 NVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVANQPK 105
+ D+ FFE +AK +IVG AR+ G VG++A + K
Sbjct: 1905 GLFDKDSFFETLSGWAKGVIVGRARLGGIPVGVIAVETK 1943
>sp|A6ZMR9|HFA1_YEAS7 Acetyl-CoA carboxylase, mitochondrial OS=Saccharomyces cerevisiae
(strain YJM789) GN=HFA1 PE=3 SV=2
Length = 2273
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 67 NVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVANQPK 105
+ D+ FFE +AK +IVG AR+ G VG++A + K
Sbjct: 1905 GLFDKDSFFETLSGWAKGVIVGRARLGGIPVGVIAVETK 1943
>sp|Q13085|ACACA_HUMAN Acetyl-CoA carboxylase 1 OS=Homo sapiens GN=ACACA PE=1 SV=2
Length = 2346
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 20/78 (25%)
Query: 44 VPVLDNIVPYD-------TTTPYDMH-------------QIIYNVIDEREFFEIQPKYAK 83
VP+L++ P D T TPYD Q + D F EI +A+
Sbjct: 1910 VPLLNSKDPIDRIIEFVPTKTPYDPRWMLAGRPHPTQKGQWLSGFFDYGSFSEIMQPWAQ 1969
Query: 84 NIIVGFARINGHSVGIVA 101
++VG AR+ G VG+VA
Sbjct: 1970 TVVVGRARLGGIPVGVVA 1987
>sp|Q00955|ACAC_YEAST Acetyl-CoA carboxylase OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ACC1 PE=1 SV=2
Length = 2233
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 13/71 (18%)
Query: 41 TQDVPVLDNIVPYDTTTPYDMHQII----------YNVIDEREFFEIQPKYAKNIIVGFA 90
T D PV + P + T YD+ +I Y + D+ FFE +AK ++VG A
Sbjct: 1826 TWDRPV--DFTPTNDET-YDVRWMIEGRETESGFEYGLFDKGSFFETLSGWAKGVVVGRA 1882
Query: 91 RINGHSVGIVA 101
R+ G +G++
Sbjct: 1883 RLGGIPLGVIG 1893
>sp|P11029|ACAC_CHICK Acetyl-CoA carboxylase OS=Gallus gallus GN=ACAC PE=1 SV=1
Length = 2324
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 20/78 (25%)
Query: 44 VPVLDNIVPYD-------TTTPYDMHQIIYN-------------VIDEREFFEIQPKYAK 83
VP+L P D T TPYD ++ D F EI +A+
Sbjct: 1887 VPILKVKDPIDRTIDFVPTKTPYDPRWMLAGRPNPSQKGQWQSGFFDNGSFLEIMQPWAQ 1946
Query: 84 NIIVGFARINGHSVGIVA 101
++VG AR+ G VG+VA
Sbjct: 1947 TVVVGRARLGGIPVGVVA 1964
>sp|P56985|GALE_NEIMB UDP-glucose 4-epimerase OS=Neisseria meningitidis serogroup B
(strain MC58) GN=galE PE=3 SV=1
Length = 339
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 19/82 (23%)
Query: 44 VPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQ---PKYAKNIIVGFARINGHSVGIV 100
VP +++ P DTT+PY + + ER +IQ P+++ ++ F I H G++
Sbjct: 135 VPYTEDMPPGDTTSPYGASKSMV----ERILTDIQKADPRWSMILLRYFNPIGAHESGLI 190
Query: 101 ANQP------------KVAAGK 110
QP +VAAGK
Sbjct: 191 GEQPNGIPNNLLPYICQVAAGK 212
>sp|P11497|ACACA_RAT Acetyl-CoA carboxylase 1 OS=Rattus norvegicus GN=Acaca PE=1 SV=1
Length = 2345
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 20/78 (25%)
Query: 44 VPVLDNIVPYD-------TTTPYDMH-------------QIIYNVIDEREFFEIQPKYAK 83
VP+L++ P D T PYD Q + D F EI +A+
Sbjct: 1909 VPLLNSKDPIDRIIEFVPTKAPYDPRWMLAGRPHPTQKGQWLSGFFDYGSFSEIMQPWAQ 1968
Query: 84 NIIVGFARINGHSVGIVA 101
++VG AR+ G VG+VA
Sbjct: 1969 TVVVGRARLGGIPVGVVA 1986
>sp|Q5SWU9|ACACA_MOUSE Acetyl-CoA carboxylase 1 OS=Mus musculus GN=Acaca PE=1 SV=1
Length = 2345
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 20/78 (25%)
Query: 44 VPVLDNIVPYD-------TTTPYDMH-------------QIIYNVIDEREFFEIQPKYAK 83
VP+L++ P D T PYD Q + D F EI +A+
Sbjct: 1909 VPLLNSKDPIDRIIEFVPTKAPYDPRWMLAGRPHPTQKGQWLSGFFDYGSFSEIMQPWAQ 1968
Query: 84 NIIVGFARINGHSVGIVA 101
++VG AR+ G VG+VA
Sbjct: 1969 TVVVGRARLGGIPVGVVA 1986
>sp|Q28559|ACACA_SHEEP Acetyl-CoA carboxylase 1 OS=Ovis aries GN=ACACA PE=2 SV=1
Length = 2346
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 20/78 (25%)
Query: 44 VPVLDNIVPYD-------TTTPYDMH-------------QIIYNVIDEREFFEIQPKYAK 83
VP+L++ P D T PYD Q + D F EI +A+
Sbjct: 1910 VPLLNSKDPIDRVIEFVPTKAPYDPRWMLAGRPHPTQKGQWLSGFFDYGSFSEIMQPWAQ 1969
Query: 84 NIIVGFARINGHSVGIVA 101
++VG AR+ G VG+VA
Sbjct: 1970 TVVVGRARLGGIPVGVVA 1987
>sp|Q9TTS3|ACACA_BOVIN Acetyl-CoA carboxylase 1 OS=Bos taurus GN=ACACA PE=2 SV=1
Length = 2346
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 20/78 (25%)
Query: 44 VPVLDNIVPYD-------TTTPYDMH-------------QIIYNVIDEREFFEIQPKYAK 83
VP+L++ P D T PYD Q + D F EI +A+
Sbjct: 1910 VPLLNSKDPIDRVIEFVPTKAPYDPRWMLAGRPHPTQKGQWLSGFFDYGSFSEIMQPWAQ 1969
Query: 84 NIIVGFARINGHSVGIVA 101
++VG AR+ G VG+VA
Sbjct: 1970 TVVVGRARLGGIPVGVVA 1987
>sp|P56986|GALE_NEIMC UDP-glucose 4-epimerase OS=Neisseria meningitidis serogroup C
GN=galE PE=3 SV=1
Length = 339
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 19/82 (23%)
Query: 44 VPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQ---PKYAKNIIVGFARINGHSVGIV 100
VP +++ P DTT+PY + + ER +IQ P+++ ++ F I H G++
Sbjct: 135 VPYTEDMQPGDTTSPYGTSKSMV----ERILSDIQKADPRWSVILLRYFNPIGAHESGLI 190
Query: 101 ANQP------------KVAAGK 110
QP +VAAGK
Sbjct: 191 GEQPNGIPNNLLPYICQVAAGK 212
>sp|P78820|ACAC_SCHPO Acetyl-CoA carboxylase OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=cut6 PE=1 SV=2
Length = 2280
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 60 DMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVA 101
D +Y + D+ F E +AK ++VG AR+ G G++A
Sbjct: 1892 DEDSFLYGLFDKGSFQETLNGWAKTVVVGRARMGGIPTGVIA 1933
>sp|Q9XEE6|C3H29_ARATH Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis
thaliana GN=At2g40140 PE=2 SV=1
Length = 597
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 44/75 (58%), Gaps = 6/75 (8%)
Query: 9 IDVLNSDAKFNQNRSRQSRGIAEQTNSHLNLMTQDVPVLDNIV---PYDTTTPYDMHQII 65
+D+L D++F N+SR++ + T H ++M ++ L ++V P D + P D+++ +
Sbjct: 152 VDLLAKDSRFVPNQSRKAVEVL-LTGIHGSVMEEEEEELKSVVTKYPADASLP-DINEGV 209
Query: 66 YNVIDEREF-FEIQP 79
Y D R F F+++P
Sbjct: 210 YGTDDFRMFSFKVKP 224
>sp|P04591|GAG_HV1H2 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate HXB2) GN=gag PE=1 SV=3
Length = 500
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 53/118 (44%), Gaps = 15/118 (12%)
Query: 20 QNRSRQSRGIAEQTNSHLNLMTQDVPVLDNI---VPYDTTTPYDMHQIIYNVIDEREFF- 75
QN+S++ A H N ++Q+ P++ NI + + +P ++ + V++E+ F
Sbjct: 108 QNKSKKKAQQAAADTGHSNQVSQNYPIVQNIQGQMVHQAISPRTLNAWV-KVVEEKAFSP 166
Query: 76 EIQPKYA--------KNIIVGFARINGHSVGIVANQPKV--AAGKWTFIHSFHPTSIA 123
E+ P ++ +++ + GH + + + A +W +H H IA
Sbjct: 167 EVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIA 224
>sp|A6NM62|LRC53_HUMAN Leucine-rich repeat-containing protein 53 OS=Homo sapiens GN=LRRC53
PE=2 SV=2
Length = 1247
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Query: 10 DVLNSDAKFNQNRSRQSRGIAEQTNSHLNLMTQDVPVLDNIVPYDTTTPYDMHQIIYNVI 69
D N + +QN + Q R EQ +SH L ++ ++ T P HQI+ N I
Sbjct: 938 DSYNKEYTLDQNEALQHR---EQNSSHAQLENKEKTLM--------TKPQISHQIVENCI 986
Query: 70 DEREFFEIQPKYAK 83
++E +++ K +K
Sbjct: 987 MDKEENDVEKKLSK 1000
>sp|P04585|POL_HV1H2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate HXB2) GN=gag-pol PE=1 SV=4
Length = 1435
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 53/118 (44%), Gaps = 15/118 (12%)
Query: 20 QNRSRQSRGIAEQTNSHLNLMTQDVPVLDNI---VPYDTTTPYDMHQIIYNVIDEREFF- 75
QN+S++ A H N ++Q+ P++ NI + + +P ++ + V++E+ F
Sbjct: 108 QNKSKKKAQQAAADTGHSNQVSQNYPIVQNIQGQMVHQAISPRTLNAWV-KVVEEKAFSP 166
Query: 76 EIQPKYA--------KNIIVGFARINGHSVGIVANQPKV--AAGKWTFIHSFHPTSIA 123
E+ P ++ +++ + GH + + + A +W +H H IA
Sbjct: 167 EVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIA 224
>sp|Q54J08|ACAC_DICDI Acetyl-CoA carboxylase OS=Dictyostelium discoideum GN=accA PE=3 SV=1
Length = 2282
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 65 IYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVANQPK 105
I + D+ F E +A +I G AR+ G VGI+A + K
Sbjct: 1891 ISGMFDKDSFMETLAGWANTVITGRARLGGIPVGIIAVETK 1931
>sp|Q92ME7|AROB_RHIME 3-dehydroquinate synthase OS=Rhizobium meliloti (strain 1021)
GN=aroB PE=3 SV=1
Length = 377
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 53/138 (38%), Gaps = 15/138 (10%)
Query: 2 TDLLATCIDVLNSDAKFNQNRSRQSRGIAEQTNSHLNLMTQDVPVLDNIVPYDTTTPYDM 61
T LLA + N + G+ Q + L+ D LD + P + Y
Sbjct: 139 TSLLAQVDSSVGGKTGINSAHGKNLIGVFHQPD----LVLADTAALDTLSPREFRAGY-A 193
Query: 62 HQIIYNVIDEREFFEIQPKYAKNIIVGF-ARINGHSVGIVANQPKVAA-----GKWTFI- 114
Y +ID+ EFFE K + + G ARI +V A VAA G+ +
Sbjct: 194 EVAKYGLIDKPEFFEWLEKNWQAVFAGGPARIEAIAVSCQAKADVVAADERENGRRALLN 253
Query: 115 --HSF-HPTSIALIYSTK 129
H+F H A Y +K
Sbjct: 254 LGHTFGHALEAATDYDSK 271
>sp|O00763|ACACB_HUMAN Acetyl-CoA carboxylase 2 OS=Homo sapiens GN=ACACB PE=1 SV=3
Length = 2458
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 70 DEREFFEIQPKYAKNIIVGFARINGHSVGIVA 101
D F EI +A+ ++ G AR+ G VG++A
Sbjct: 2067 DHGSFKEIMAPWAQTVVTGRARLGGIPVGVIA 2098
>sp|P24325|GALE_HAEIN UDP-glucose 4-epimerase OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=galE PE=3 SV=2
Length = 338
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 40 MTQDVPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGI 99
+T+D V PY T+ Y + QI+ R+ + +PK++ I+ F + H G+
Sbjct: 136 ITEDCEVGGTTNPYGTSK-YMVEQIL------RDTAKAEPKFSMTILRYFNPVGAHESGL 188
Query: 100 VANQP 104
+ P
Sbjct: 189 IGEDP 193
>sp|Q38970|ACC1_ARATH Acetyl-CoA carboxylase 1 OS=Arabidopsis thaliana GN=ACC1 PE=1 SV=1
Length = 2254
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 68 VIDEREFFEIQPKYAKNIIVGFARINGHSVGIVA 101
+ D+ F E +A+ ++ G A++ G VG+VA
Sbjct: 1868 IFDKNSFIETLEGWARTVVTGRAKLGGIPVGVVA 1901
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,724,513
Number of Sequences: 539616
Number of extensions: 1885708
Number of successful extensions: 5373
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 5326
Number of HSP's gapped (non-prelim): 55
length of query: 129
length of database: 191,569,459
effective HSP length: 95
effective length of query: 34
effective length of database: 140,305,939
effective search space: 4770401926
effective search space used: 4770401926
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)