Query psy5157
Match_columns 129
No_of_seqs 153 out of 1232
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 18:49:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5157.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5157hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4799 Acetyl-CoA carboxylase 100.0 8.1E-34 1.7E-38 247.5 6.7 124 5-128 227-357 (526)
2 PF01039 Carboxyl_trans: Carbo 100.0 4.2E-30 9.2E-35 222.4 8.2 123 5-128 195-327 (493)
3 TIGR01117 mmdA methylmalonyl-C 100.0 2.5E-28 5.4E-33 212.9 9.4 123 5-127 218-347 (512)
4 PLN02820 3-methylcrotonyl-CoA 99.9 3.6E-27 7.9E-32 207.9 9.6 119 5-128 269-399 (569)
5 KOG0540|consensus 99.9 2.8E-27 6.1E-32 203.3 6.8 124 5-128 252-382 (536)
6 PRK05654 acetyl-CoA carboxylas 99.6 1.2E-15 2.6E-20 125.8 9.3 79 49-127 47-153 (292)
7 PRK05724 acetyl-CoA carboxylas 99.6 2.2E-15 4.9E-20 125.6 6.3 74 51-127 63-148 (319)
8 TIGR00515 accD acetyl-CoA carb 99.6 8.8E-15 1.9E-19 120.3 9.6 80 48-127 45-152 (285)
9 TIGR00513 accA acetyl-CoA carb 99.6 9.7E-15 2.1E-19 121.7 8.3 74 51-127 63-148 (316)
10 PLN02820 3-methylcrotonyl-CoA 99.5 2E-14 4.3E-19 127.4 9.0 74 53-126 76-160 (569)
11 PRK12319 acetyl-CoA carboxylas 99.4 3.2E-13 7E-18 109.6 8.5 72 54-127 12-95 (256)
12 TIGR03133 malonate_beta malona 99.4 9.6E-13 2.1E-17 107.9 9.4 70 57-126 4-90 (274)
13 PRK07189 malonate decarboxylas 99.4 3.2E-12 7E-17 106.0 8.8 73 54-126 10-99 (301)
14 TIGR01117 mmdA methylmalonyl-C 99.4 3.1E-12 6.7E-17 112.2 9.1 73 54-126 26-113 (512)
15 CHL00174 accD acetyl-CoA carbo 99.3 5.8E-12 1.3E-16 104.3 9.5 79 48-126 57-164 (296)
16 PLN03230 acetyl-coenzyme A car 99.3 3.8E-12 8.3E-17 109.5 7.4 72 53-127 135-218 (431)
17 CHL00198 accA acetyl-CoA carbo 99.3 3.7E-12 7.9E-17 106.5 6.6 68 58-127 72-151 (322)
18 PF01039 Carboxyl_trans: Carbo 99.3 1.2E-11 2.5E-16 107.7 7.5 72 55-126 4-88 (493)
19 TIGR03134 malonate_gamma malon 99.3 1.9E-11 4.1E-16 98.4 7.8 59 61-126 2-60 (238)
20 COG4799 Acetyl-CoA carboxylase 99.2 1.4E-11 3.1E-16 108.4 6.5 75 52-126 36-122 (526)
21 PLN03229 acetyl-coenzyme A car 99.1 8.4E-11 1.8E-15 106.7 6.1 65 61-127 163-239 (762)
22 KOG0368|consensus 99.0 4.3E-10 9.4E-15 107.6 4.5 93 28-125 1777-1900(2196)
23 COG0777 AccD Acetyl-CoA carbox 98.8 2.6E-08 5.6E-13 82.2 8.5 78 49-126 48-153 (294)
24 KOG0540|consensus 98.8 7.7E-09 1.7E-13 90.1 4.8 74 53-126 58-143 (536)
25 PF03255 ACCA: Acetyl co-enzym 98.2 7.7E-06 1.7E-10 61.9 7.7 70 54-126 63-144 (145)
26 COG0825 AccA Acetyl-CoA carbox 97.2 0.00075 1.6E-08 56.5 5.3 72 52-126 63-146 (317)
27 PF01282 Ribosomal_S24e: Ribos 63.5 12 0.00026 25.5 3.5 33 60-92 17-53 (84)
28 PRK01178 rps24e 30S ribosomal 63.2 12 0.00025 26.6 3.5 36 58-93 33-72 (99)
29 PTZ00071 40S ribosomal protein 46.2 28 0.00061 26.0 3.4 37 58-94 38-79 (132)
30 COG2004 RPS24A Ribosomal prote 45.3 26 0.00056 25.4 2.9 35 58-92 34-72 (107)
31 COG1886 FliN Flagellar motor s 24.4 1.7E+02 0.0037 21.4 4.5 39 55-98 80-118 (136)
32 cd00769 PheRS_beta_core Phenyl 23.2 1.5E+02 0.0033 22.3 4.2 45 57-102 122-173 (198)
33 KOG3155|consensus 22.7 42 0.00091 26.2 0.9 15 2-16 39-53 (173)
No 1
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=100.00 E-value=8.1e-34 Score=247.47 Aligned_cols=124 Identities=31% Similarity=0.481 Sum_probs=116.8
Q ss_pred hhhHHhhhhccc--chhccccee-----cCCCCCCcccCCCCCCCCcccccccccCCCCCCCCHHHHHhhcccCCceEEe
Q psy5157 5 LATCIDVLNSDA--KFNQNRSRQ-----SRGIAEQTNSHLNLMTQDVPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEI 77 (129)
Q Consensus 5 ~~~~~d~~~~~~--~~~~~r~~~-----~~~~~~p~~~~~d~~~~~~~~L~~ivP~~~~~~yD~revI~~l~D~~sF~El 77 (129)
.|++.|+++.|| +++.+|+++ +....+|..++.++|.+++++|++++|.+++++|||||+|.+|+|.++|+|+
T Consensus 227 ~sGva~~~a~dd~~Ai~~vr~~lsylp~~~~~~~p~~~~~~~~~~~~~~l~~ivP~d~~~pYDvrevI~rl~D~~~F~E~ 306 (526)
T COG4799 227 KSGVADLLAEDDEDAIELVRRLLSYLPSNNREPPPVVPTPDEPDRDDEELDSIVPDDPRKPYDVREVIARLVDDGEFLEF 306 (526)
T ss_pred cccceeeeecCHHHHHHHHHHHHHhcCccCCCCCCcCCCCCCcccChhhhcccCCCCCCccccHHHHHHHhcCCccHHHH
Confidence 479999999999 899999998 3356667667889999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEEEEECCEEEEEEeeCCCccCcccChhhhhHHHHHHHhhcC
Q psy5157 78 QPKYAKNIIVGFARINGHSVGIVANQPKVAAGKWTFIHSFHPTSIALIYST 128 (129)
Q Consensus 78 ~~~yG~~vvtG~arI~G~~VGvvAnd~~~~gG~l~~~~a~K~arfv~l~~~ 128 (129)
++.||+++|||||||+|+|||||||||+++||+|+.++|+|++||++||+.
T Consensus 307 ~~~~a~~iV~GfaRi~G~pVGiIANqp~~~~G~l~~~sa~KaArFI~~cd~ 357 (526)
T COG4799 307 KAGYAKNIVTGFARIDGRPVGIIANQPRHLGGVLDIDSADKAARFIRLCDA 357 (526)
T ss_pred HhhhCcceEEEEEEECCEEEEEEecCccccccccchHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999999963
No 2
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=99.96 E-value=4.2e-30 Score=222.37 Aligned_cols=123 Identities=31% Similarity=0.514 Sum_probs=106.5
Q ss_pred hhhHHhhhhccc--chhccccee---c---CC--CCCCcccCCCCCCCCcccccccccCCCCCCCCHHHHHhhcccCCce
Q psy5157 5 LATCIDVLNSDA--KFNQNRSRQ---S---RG--IAEQTNSHLNLMTQDVPVLDNIVPYDTTTPYDMHQIIYNVIDEREF 74 (129)
Q Consensus 5 ~~~~~d~~~~~~--~~~~~r~~~---~---~~--~~~p~~~~~d~~~~~~~~L~~ivP~~~~~~yD~revI~~l~D~~sF 74 (129)
.++++|+++.+| |++++|++| | .. ..+|+.++.|++++. ++|+.++|.+.+++||||++|++++|.++|
T Consensus 195 ~sG~~d~v~~de~~a~~~ir~~ls~lp~~~~~~~~~~p~~~~~d~~~~~-~~l~~~~P~~~~~~yD~r~ii~~i~D~~~f 273 (493)
T PF01039_consen 195 KSGVVDYVVDDEEDALAQIRRLLSYLPSPASNNFEDPPRVPTSDPPDRD-EELDSIIPDDRRRPYDMRDIIARIVDDGSF 273 (493)
T ss_dssp TSSSSSEEESSHHHHHHHHHHHHHTS-SSTSSTTSS--BSSSSSGSSSC-GGGHGCS-SSTTS---HHHHHHHHSGGGBE
T ss_pred cCCCceEEEechHHHHHHHHHhhcccccccccccCCCcccccCCCcccc-cccccccccccCCCCCcceeeEecccCCCc
Confidence 578999999988 799999988 3 22 367887888999999 999999999999999999999999999999
Q ss_pred EEeccCCCCeEEEEEEEECCEEEEEEeeCCCccCcccChhhhhHHHHHHHhhcC
Q psy5157 75 FEIQPKYAKNIIVGFARINGHSVGIVANQPKVAAGKWTFIHSFHPTSIALIYST 128 (129)
Q Consensus 75 ~El~~~yG~~vvtG~arI~G~~VGvvAnd~~~~gG~l~~~~a~K~arfv~l~~~ 128 (129)
+|+++.||+++|||||||+|+||||||||+++.+|++++++++|++||++||++
T Consensus 274 ~E~~~~~g~~~vtg~arl~G~pVGiian~~~~~~G~~~~~~a~K~arfi~lcd~ 327 (493)
T PF01039_consen 274 FELKPGYGKNIVTGFARLGGRPVGIIANNPRQRAGALDPDGARKAARFIRLCDA 327 (493)
T ss_dssp EEESTTSSTTEEEEEEEETTEEEEEEEE-TTCGGGEB-HHHHHHHHHHHHHHHH
T ss_pred eeccccccCCeEEeeeeeCCcceEEEEeccccccccCChHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999974
No 3
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=99.95 E-value=2.5e-28 Score=212.88 Aligned_cols=123 Identities=32% Similarity=0.450 Sum_probs=113.8
Q ss_pred hhhHHhhhhccc--chhccccee-----cCCCCCCcccCCCCCCCCcccccccccCCCCCCCCHHHHHhhcccCCceEEe
Q psy5157 5 LATCIDVLNSDA--KFNQNRSRQ-----SRGIAEQTNSHLNLMTQDVPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEI 77 (129)
Q Consensus 5 ~~~~~d~~~~~~--~~~~~r~~~-----~~~~~~p~~~~~d~~~~~~~~L~~ivP~~~~~~yD~revI~~l~D~~sF~El 77 (129)
+++++|+++.+| |++++|++| +....||+..+.+++.+..++|++++|.+.+++||||++|+.|+|+++|+|+
T Consensus 218 ~sGv~d~~~~de~ea~~~~r~~ls~lp~~~~~~~p~~~~~~~~~~~~~~l~~~iP~~~~~~~d~r~~i~~l~D~~sf~El 297 (512)
T TIGR01117 218 VSGVAHFIAEDDDDCIMLIRRLLSFLPSNNMEKAPLVKTGDDPTRETPELYDLLPDNPNKPYDMRDVITAIVDNGDYLEV 297 (512)
T ss_pred ccceeEEecCChHHHHHHHHHHHHhCCcCCCCCCCCCCCCCCccccchhhhhhCCCCCCCCCCHHHHHHHhCCCCceEEe
Confidence 589999999999 799999999 2335566666678888888899999999999999999999999999999999
Q ss_pred ccCCCCeEEEEEEEECCEEEEEEeeCCCccCcccChhhhhHHHHHHHhhc
Q psy5157 78 QPKYAKNIIVGFARINGHSVGIVANQPKVAAGKWTFIHSFHPTSIALIYS 127 (129)
Q Consensus 78 ~~~yG~~vvtG~arI~G~~VGvvAnd~~~~gG~l~~~~a~K~arfv~l~~ 127 (129)
++.||+++|||+|||+|++|||+|||++++||+++.++++|++||+++|.
T Consensus 298 ~~~~g~~vVtG~gri~G~~V~vvAnd~~~~~G~~~~~~~~K~~r~i~~a~ 347 (512)
T TIGR01117 298 QPYYAPNIITCFARINGQSVGIIANQPKVMAGCLDIDSSDKIARFIRFCD 347 (512)
T ss_pred eccCCCcEEEEEEEECCEEEEEEEeccccccCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999994
No 4
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=99.94 E-value=3.6e-27 Score=207.92 Aligned_cols=119 Identities=24% Similarity=0.390 Sum_probs=102.6
Q ss_pred hhhHHhhhhccc--chhccccee---cCCC-------CCCcccCCCCCCCCcccccccccCCCCCCCCHHHHHhhcccCC
Q psy5157 5 LATCIDVLNSDA--KFNQNRSRQ---SRGI-------AEQTNSHLNLMTQDVPVLDNIVPYDTTTPYDMHQIIYNVIDER 72 (129)
Q Consensus 5 ~~~~~d~~~~~~--~~~~~r~~~---~~~~-------~~p~~~~~d~~~~~~~~L~~ivP~~~~~~yD~revI~~l~D~~ 72 (129)
+|+++|+++.+| ||.++|++| |... .++..++.++|.++.++|++++|.+.+++||||++|++|+|++
T Consensus 269 ~sGv~d~~~~de~~a~~~~R~lls~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ivP~~~~~~yD~r~vi~~ivD~~ 348 (569)
T PLN02820 269 VSGVSDHFAQDELHALAIGRNIVKNLHLAAKQGMENTLGSKNPEYKEPLYDVKELRGIVPADHKQSFDVRSVIARIVDGS 348 (569)
T ss_pred cccccccccCchHHHHHHHHHHHHhcCcCCcccccccccCCCCCCcCcccChhhHhhccCCCCCCCCCHHHHHHHhcCCc
Confidence 589999999999 799999887 2211 0111123334556677899999999999999999999999999
Q ss_pred ceEEeccCCCCeEEEEEEEECCEEEEEEeeCCCccCcccChhhhhHHHHHHHhhcC
Q psy5157 73 EFFEIQPKYAKNIIVGFARINGHSVGIVANQPKVAAGKWTFIHSFHPTSIALIYST 128 (129)
Q Consensus 73 sF~El~~~yG~~vvtG~arI~G~~VGvvAnd~~~~gG~l~~~~a~K~arfv~l~~~ 128 (129)
||+|+++.||+++|||||||+|++||||||+ |+++.++++|++||++||+.
T Consensus 349 sf~E~~~~~g~~iVtG~aRi~G~~VgvvAn~-----g~l~~~~a~Kaarfi~lc~~ 399 (569)
T PLN02820 349 EFDEFKKNYGTTLVTGFARIYGQPVGIIGNN-----GILFTESALKGAHFIELCAQ 399 (569)
T ss_pred eeEEecccCCCcEEEEEEEECCEEEEEEEEC-----CccCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998 89999999999999999964
No 5
>KOG0540|consensus
Probab=99.94 E-value=2.8e-27 Score=203.35 Aligned_cols=124 Identities=27% Similarity=0.439 Sum_probs=109.2
Q ss_pred hhhHHhhhhccc--chhccccee---cC--CCCCCcccCCCCCCCCcccccccccCCCCCCCCHHHHHhhcccCCceEEe
Q psy5157 5 LATCIDVLNSDA--KFNQNRSRQ---SR--GIAEQTNSHLNLMTQDVPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEI 77 (129)
Q Consensus 5 ~~~~~d~~~~~~--~~~~~r~~~---~~--~~~~p~~~~~d~~~~~~~~L~~ivP~~~~~~yD~revI~~l~D~~sF~El 77 (129)
.|+++|+.+.++ ++-..|... +- ..+.+...+.|||+++..+|+.|+|.+.+++||+|++|++|+|.+.|+|+
T Consensus 252 ~sGv~~~~~~~dv~al~~~r~~~~~l~~~~~~~a~~p~~~~p~d~~~~eld~Iv~~~~~~~yd~r~vi~~iVD~~~f~E~ 331 (536)
T KOG0540|consen 252 TSGVADKAAKNDVHALCLLRLKVSNLPLSEIDLAIDPGTWDPPDYDAPELDGIVPLNLTKAYDVREVIARIVDGSRFFEF 331 (536)
T ss_pred eccchhhhhhccHHHHHHHHHHHccCCcccccccCCcccCCcccccchhhccccccccccccchHhHHHhhcccchhhhh
Confidence 578999999998 344444444 22 23333334679999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEEEEECCEEEEEEeeCCCccCcccChhhhhHHHHHHHhhcC
Q psy5157 78 QPKYAKNIIVGFARINGHSVGIVANQPKVAAGKWTFIHSFHPTSIALIYST 128 (129)
Q Consensus 78 ~~~yG~~vvtG~arI~G~~VGvvAnd~~~~gG~l~~~~a~K~arfv~l~~~ 128 (129)
++.||+++|||||||+|+||||++|||+++||+|+.+++.|.+||++||+.
T Consensus 332 ~~~y~~tlvtGfarlnG~tVgIvgnn~kf~~G~L~s~sa~KgarfIe~c~q 382 (536)
T KOG0540|consen 332 KPGYGDTLVTGFARLNGRTVGIVGNNPKFAGGVLFSESAVKGARFIELCDQ 382 (536)
T ss_pred ccccccceeeeeeeECCEEEEEeccCchhcccccchhhhhhhHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999963
No 6
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=99.63 E-value=1.2e-15 Score=125.79 Aligned_cols=79 Identities=14% Similarity=0.170 Sum_probs=71.4
Q ss_pred ccccC-CCCCCCCHHHHHhhcccCCceEEeccC---------------------------CCCeEEEEEEEECCEEEEEE
Q psy5157 49 NIVPY-DTTTPYDMHQIIYNVIDEREFFEIQPK---------------------------YAKNIIVGFARINGHSVGIV 100 (129)
Q Consensus 49 ~ivP~-~~~~~yD~revI~~l~D~~sF~El~~~---------------------------yG~~vvtG~arI~G~~VGvv 100 (129)
.+.|. +...++.+||+|+.|+|++||.|+... .+.++|||+|||+|++|+|+
T Consensus 47 ~vc~~c~~h~rl~areRi~~L~D~gsF~E~~~~~~~~d~l~f~~~~~Y~~~l~~~~~~t~~~d~vVtG~g~I~G~~V~v~ 126 (292)
T PRK05654 47 NVCPKCGHHMRISARERLDLLLDEGSFVELDAELEPKDPLKFRDSKKYKDRLKAAQKKTGLKDAVVTGKGTIEGMPVVLA 126 (292)
T ss_pred CCCCCCCCCeeCCHHHHHHHHccCCccEEecCccccCCcccCCcccccchHHHHhhhccCCCCcEEEEEEEECCEEEEEE
Confidence 46773 566789999999999999999999751 25799999999999999999
Q ss_pred eeCCCccCcccChhhhhHHHHHHHhhc
Q psy5157 101 ANQPKVAAGKWTFIHSFHPTSIALIYS 127 (129)
Q Consensus 101 And~~~~gG~l~~~~a~K~arfv~l~~ 127 (129)
|||++++||+++..+++|++||+++|.
T Consensus 127 a~D~~f~gGS~g~~~~eKi~r~~e~A~ 153 (292)
T PRK05654 127 VMDFSFMGGSMGSVVGEKIVRAVERAI 153 (292)
T ss_pred EEecccccCCccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999994
No 7
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=99.58 E-value=2.2e-15 Score=125.59 Aligned_cols=74 Identities=22% Similarity=0.314 Sum_probs=68.6
Q ss_pred ccCCCCCCCCHHHHHhhcccCCceEEeccC--CC--CeEEEEEEEECCEEEEEEeeCCC--------ccCcccChhhhhH
Q psy5157 51 VPYDTTTPYDMHQIIYNVIDEREFFEIQPK--YA--KNIIVGFARINGHSVGIVANQPK--------VAAGKWTFIHSFH 118 (129)
Q Consensus 51 vP~~~~~~yD~revI~~l~D~~sF~El~~~--yG--~~vvtG~arI~G~~VGvvAnd~~--------~~gG~l~~~~a~K 118 (129)
++.+++++|++ ++|+.|+| +|+|++.. || +++|||||||+|+||+|||||++ +.+|.+++++++|
T Consensus 63 ~ar~~~Rp~~~-d~I~~l~d--~f~El~gdr~~~dd~aiV~G~ari~GrpV~VIa~d~g~~~~e~~~~~~G~~~peg~rK 139 (319)
T PRK05724 63 LARHPQRPYTL-DYIELLFT--DFTELHGDRAFADDKAIVGGLARLNGRPVMVIGHQKGRDTKEKIRRNFGMPRPEGYRK 139 (319)
T ss_pred cccCCCCCCHH-HHHHHHhh--HHHHHcCCcCCCCCCceEEEEEEECCEEEEEEEecCCccccccccccCCCCCHHHHHH
Confidence 67889999995 99999998 69999887 88 99999999999999999999984 5799999999999
Q ss_pred HHHHHHhhc
Q psy5157 119 PTSIALIYS 127 (129)
Q Consensus 119 ~arfv~l~~ 127 (129)
++||+++|.
T Consensus 140 a~R~m~lA~ 148 (319)
T PRK05724 140 ALRLMKMAE 148 (319)
T ss_pred HHHHHHHHH
Confidence 999999994
No 8
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=99.58 E-value=8.8e-15 Score=120.31 Aligned_cols=80 Identities=14% Similarity=0.139 Sum_probs=71.5
Q ss_pred ccccc-CCCCCCCCHHHHHhhcccCCceEEeccC---------------------------CCCeEEEEEEEECCEEEEE
Q psy5157 48 DNIVP-YDTTTPYDMHQIIYNVIDEREFFEIQPK---------------------------YAKNIIVGFARINGHSVGI 99 (129)
Q Consensus 48 ~~ivP-~~~~~~yD~revI~~l~D~~sF~El~~~---------------------------yG~~vvtG~arI~G~~VGv 99 (129)
+.+.| .+...+.++||+|+.|+|++||.|+... .+.++|||+|+|+|++|+|
T Consensus 45 ~~vc~~c~~h~rl~areRi~~L~D~gsF~E~~~~~~~~d~l~f~~~~~Y~~~l~~~~~~t~~~d~vVtG~g~I~G~~V~v 124 (285)
T TIGR00515 45 LEVCPKCDHHMRMDARERIESLLDEGSFEEFNSHLEPKDPLKFKDSKKYKDRIAKAQKETGEKDAVVTGKGTLYGMPIVV 124 (285)
T ss_pred CCCCCCCCCcCcCCHHHHHHHceeCCeeEEeCCccccCccccCCcccchhHHHHHHhhccCCCCcEEEEEEEECCEEEEE
Confidence 35777 4666889999999999999999999631 2469999999999999999
Q ss_pred EeeCCCccCcccChhhhhHHHHHHHhhc
Q psy5157 100 VANQPKVAAGKWTFIHSFHPTSIALIYS 127 (129)
Q Consensus 100 vAnd~~~~gG~l~~~~a~K~arfv~l~~ 127 (129)
+|+|++++||+++...++|++|++++|.
T Consensus 125 ~a~D~~f~gGSmg~~~geKi~r~~e~A~ 152 (285)
T TIGR00515 125 AVFDFAFMGGSMGSVVGEKFVRAIEKAL 152 (285)
T ss_pred EEEeccccCCCccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999984
No 9
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=99.56 E-value=9.7e-15 Score=121.65 Aligned_cols=74 Identities=23% Similarity=0.337 Sum_probs=68.0
Q ss_pred ccCCCCCCCCHHHHHhhcccCCceEEeccCCC----CeEEEEEEEECCEEEEEEeeCCC--------ccCcccChhhhhH
Q psy5157 51 VPYDTTTPYDMHQIIYNVIDEREFFEIQPKYA----KNIIVGFARINGHSVGIVANQPK--------VAAGKWTFIHSFH 118 (129)
Q Consensus 51 vP~~~~~~yD~revI~~l~D~~sF~El~~~yG----~~vvtG~arI~G~~VGvvAnd~~--------~~gG~l~~~~a~K 118 (129)
+-.+++++||+ ++|..|+|+ |+|++..|+ +++|||+|||+|+||+|+|||+. ..+|.+++.+++|
T Consensus 63 ~ar~~~Rp~~~-d~i~~l~d~--f~EL~gd~~~~dd~aiVtG~ari~GrpV~VIa~d~g~~~~e~~~~~~G~~~p~g~rK 139 (316)
T TIGR00513 63 LARHPDRPYTL-DYIELIFDD--FFELAGDRAYADDKAIVGGIARLDGRPVVVIGHQKGRDTKEKLRRNFGMPAPEGYRK 139 (316)
T ss_pred HHhCCCCCchH-HHHHHHhhh--heeeccccCCCCCCceEEEEEEECCEEEEEEEecCCccccccccccCCCCCHHHHHH
Confidence 35678899999 999999994 999998877 99999999999999999999985 5789999999999
Q ss_pred HHHHHHhhc
Q psy5157 119 PTSIALIYS 127 (129)
Q Consensus 119 ~arfv~l~~ 127 (129)
++||+++|.
T Consensus 140 a~R~m~lA~ 148 (316)
T TIGR00513 140 ALRLMKMAE 148 (316)
T ss_pred HHHHHHHHH
Confidence 999999994
No 10
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=99.54 E-value=2e-14 Score=127.39 Aligned_cols=74 Identities=20% Similarity=0.254 Sum_probs=68.9
Q ss_pred CCCCCCCCHHHHHhhcccCCc-eEEeccCCC----------CeEEEEEEEECCEEEEEEeeCCCccCcccChhhhhHHHH
Q psy5157 53 YDTTTPYDMHQIIYNVIDERE-FFEIQPKYA----------KNIIVGFARINGHSVGIVANQPKVAAGKWTFIHSFHPTS 121 (129)
Q Consensus 53 ~~~~~~yD~revI~~l~D~~s-F~El~~~yG----------~~vvtG~arI~G~~VGvvAnd~~~~gG~l~~~~a~K~ar 121 (129)
...+.++.+||+|+.|+|++| |+|+++.+| .++|||+|+|+|++|+|++||++++||+++..+++|+.|
T Consensus 76 ~~~~gkltaReRI~~LlD~gS~F~El~~lag~~~y~~~~~~dgVVtG~G~V~Gr~V~v~a~D~tv~GGs~g~~~~~Ki~r 155 (569)
T PLN02820 76 HRSRNKLLPRERIDRLLDPGSPFLELSQLAGHELYGEDLPSGGIVTGIGPVHGRLCMFVANDPTVKGGTYYPITVKKHLR 155 (569)
T ss_pred hhhcCCCCHHHHHHHHcCCCCCeEEchhhccCCcccccCCCCeEEEEEEEECCEEEEEEEECCCccCCCCCHHHHHHHHH
Confidence 367789999999999999999 999986544 579999999999999999999999999999999999999
Q ss_pred HHHhh
Q psy5157 122 IALIY 126 (129)
Q Consensus 122 fv~l~ 126 (129)
++++|
T Consensus 156 ~~elA 160 (569)
T PLN02820 156 AQEIA 160 (569)
T ss_pred HHHHH
Confidence 99998
No 11
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=99.45 E-value=3.2e-13 Score=109.61 Aligned_cols=72 Identities=13% Similarity=0.137 Sum_probs=63.4
Q ss_pred CCCCCCCHHHHHhhcccCCceEEecc--CCCC--eEEEEEEEECCEEEEEEeeCCC--------ccCcccChhhhhHHHH
Q psy5157 54 DTTTPYDMHQIIYNVIDEREFFEIQP--KYAK--NIIVGFARINGHSVGIVANQPK--------VAAGKWTFIHSFHPTS 121 (129)
Q Consensus 54 ~~~~~yD~revI~~l~D~~sF~El~~--~yG~--~vvtG~arI~G~~VGvvAnd~~--------~~gG~l~~~~a~K~ar 121 (129)
........||+|+.|+|+ |+|++. .|++ ++|||+|||+|++|+|+|||+. ..+|++++.+++|+.|
T Consensus 12 r~~~r~~are~I~~L~D~--F~El~g~~~~~~d~~vItG~gri~Gr~V~via~~~~~~~~d~~~~~~G~~~~~g~rKa~R 89 (256)
T PRK12319 12 RDQGRLTTLDYATLIFDD--FMELHGDRHFRDDGAVVGGIGYLAGQPVTVVGIQKGKNLQDNLKRNFGQPHPEGYRKALR 89 (256)
T ss_pred ccCCCCCHHHHHHHhCch--heeccCCCCCCCCCcEEEEEEEECCEEEEEEEeccCCccccceeeeCCCCCHHHHHHHHH
Confidence 345677899999999996 999974 4775 6999999999999999999874 5799999999999999
Q ss_pred HHHhhc
Q psy5157 122 IALIYS 127 (129)
Q Consensus 122 fv~l~~ 127 (129)
|+++|.
T Consensus 90 ~~~lA~ 95 (256)
T PRK12319 90 LMKQAE 95 (256)
T ss_pred HHHHHH
Confidence 999994
No 12
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=99.42 E-value=9.6e-13 Score=107.88 Aligned_cols=70 Identities=17% Similarity=0.311 Sum_probs=63.9
Q ss_pred CCCCHHHHHhhcccCCceEEe-cc----------------CCCCeEEEEEEEECCEEEEEEeeCCCccCcccChhhhhHH
Q psy5157 57 TPYDMHQIIYNVIDEREFFEI-QP----------------KYAKNIIVGFARINGHSVGIVANQPKVAAGKWTFIHSFHP 119 (129)
Q Consensus 57 ~~yD~revI~~l~D~~sF~El-~~----------------~yG~~vvtG~arI~G~~VGvvAnd~~~~gG~l~~~~a~K~ 119 (129)
...++||+|+.|+|++||.|+ ++ .++.++|+|+|+|+|++|.|+++|++++||+++..+++|.
T Consensus 4 ~~ltAReRi~~LlD~gSF~E~~g~~~~~~~~~l~~~~~~~~~~dgvV~G~G~I~Gr~v~v~a~D~t~~GGS~G~~~g~Ki 83 (274)
T TIGR03133 4 YEANARERARGLLDAGSFRELLGPFDRVISPHLPRQGIVPQFDDGVVVGRGTIDGKPVVVAAQEGRFQGGSVGEVHGAKI 83 (274)
T ss_pred ccCCHHHHHHHhcCCCcceEcccccccccCcchhhhcccCCCCCeEEEEEEEECCEEEEEEEECCCccCcCCCHHHHHHH
Confidence 356899999999999999999 33 2368999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q psy5157 120 TSIALIY 126 (129)
Q Consensus 120 arfv~l~ 126 (129)
++.+++.
T Consensus 84 ~r~~e~A 90 (274)
T TIGR03133 84 VGALRLA 90 (274)
T ss_pred HHHHHHH
Confidence 9998876
No 13
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=99.35 E-value=3.2e-12 Score=106.02 Aligned_cols=73 Identities=15% Similarity=0.276 Sum_probs=65.7
Q ss_pred CCCCCCCHHHHHhhcccCCceEEe-cc-------C---------CCCeEEEEEEEECCEEEEEEeeCCCccCcccChhhh
Q psy5157 54 DTTTPYDMHQIIYNVIDEREFFEI-QP-------K---------YAKNIIVGFARINGHSVGIVANQPKVAAGKWTFIHS 116 (129)
Q Consensus 54 ~~~~~yD~revI~~l~D~~sF~El-~~-------~---------yG~~vvtG~arI~G~~VGvvAnd~~~~gG~l~~~~a 116 (129)
++-...++||+|+.|+|++||.|+ ++ . ++.++|||+|+|+|++|.|+|+|++++||+++..+.
T Consensus 10 ~s~~~ltARERi~~LlD~gSF~E~~g~~~~~~~~~~~~~~~~~~~~dGvV~G~G~I~Gr~v~v~a~D~tf~GGS~G~~~g 89 (301)
T PRK07189 10 RSFIEASARERAAALLDAGSFRELLGPFERVMSPHLPLQGIPPQFDDGVVVGKGTLDGRPVVVAAQEGRFMGGSVGEVHG 89 (301)
T ss_pred CCceeCCHHHHHHHhcCCCcceEcccccccccCcchhhhccCCCCCCcEEEEEEEECCEEEEEEEECCCccCcCcCHHHH
Confidence 344667899999999999999999 32 1 357999999999999999999999999999999999
Q ss_pred hHHHHHHHhh
Q psy5157 117 FHPTSIALIY 126 (129)
Q Consensus 117 ~K~arfv~l~ 126 (129)
+|..+.+++.
T Consensus 90 ~Ki~r~~e~A 99 (301)
T PRK07189 90 AKLAGALELA 99 (301)
T ss_pred HHHHHHHHHH
Confidence 9999999876
No 14
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=99.35 E-value=3.1e-12 Score=112.19 Aligned_cols=73 Identities=19% Similarity=0.244 Sum_probs=67.2
Q ss_pred CCCCCCCHHHHHhhcccCCceEEeccC---------------CCCeEEEEEEEECCEEEEEEeeCCCccCcccChhhhhH
Q psy5157 54 DTTTPYDMHQIIYNVIDEREFFEIQPK---------------YAKNIIVGFARINGHSVGIVANQPKVAAGKWTFIHSFH 118 (129)
Q Consensus 54 ~~~~~yD~revI~~l~D~~sF~El~~~---------------yG~~vvtG~arI~G~~VGvvAnd~~~~gG~l~~~~a~K 118 (129)
..+....+||+|+.|+|++||.|++.. .+.++|||+|+|+|++|.|+++|++++||+++...++|
T Consensus 26 ~~~g~l~areRi~~LlD~gsF~E~~~~~~~~~~~~~~~~~~~~~dgvVtG~G~v~Gr~v~v~a~D~t~~gGS~g~~~~~K 105 (512)
T TIGR01117 26 HAQGKMTARERLALLFDPGSFVEIDQFVKHRCTNFGMDKKELPAEGVVTGYGTIDGRLVYAFAQDFTVMGGSLGEMHAAK 105 (512)
T ss_pred HhcCCCCHHHHHHHhcCCCcEEEecCccccCCCCccccccCCCCceEEEEEEEECCEEEEEEEECCcccccCCCHHHHHH
Confidence 466889999999999999999999752 24799999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q psy5157 119 PTSIALIY 126 (129)
Q Consensus 119 ~arfv~l~ 126 (129)
..|.+++.
T Consensus 106 ~~r~~e~A 113 (512)
T TIGR01117 106 IVKIMDLA 113 (512)
T ss_pred HHHHHHHH
Confidence 99999886
No 15
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=99.34 E-value=5.8e-12 Score=104.32 Aligned_cols=79 Identities=14% Similarity=0.130 Sum_probs=70.1
Q ss_pred cccccC-CCCCCCCHHHHHhhcccCCceEEeccC--------C--------------------CCeEEEEEEEECCEEEE
Q psy5157 48 DNIVPY-DTTTPYDMHQIIYNVIDEREFFEIQPK--------Y--------------------AKNIIVGFARINGHSVG 98 (129)
Q Consensus 48 ~~ivP~-~~~~~yD~revI~~l~D~~sF~El~~~--------y--------------------G~~vvtG~arI~G~~VG 98 (129)
+.++|. +.--++++||+|+.|+|++||.|+... | +.++|||+|+|+|++|.
T Consensus 57 ~~vcp~c~~h~rltAreRI~~L~D~gSF~E~~~~~~~~dpl~f~~d~~~Y~~rl~~a~~~t~~~dgVVtG~G~I~Gr~v~ 136 (296)
T CHL00174 57 MNICEQCGYHLKMSSSDRIELLIDPGTWNPMDEDMVSLDPIEFHSDEEPYKDRIDSYQKKTGLTDAVQTGIGQLNGIPVA 136 (296)
T ss_pred CCCCCCCCCCcCCCHHHHHHHHccCCccEEcCCccCcCCCccccccccchHHHHHHHHhccCCCccEEEEEEEECCEEEE
Confidence 356773 566788999999999999999999541 2 46999999999999999
Q ss_pred EEeeCCCccCcccChhhhhHHHHHHHhh
Q psy5157 99 IVANQPKVAAGKWTFIHSFHPTSIALIY 126 (129)
Q Consensus 99 vvAnd~~~~gG~l~~~~a~K~arfv~l~ 126 (129)
++|+|++++||+++....+|..|.+++.
T Consensus 137 v~a~Dftf~gGSmG~v~geKi~ra~e~A 164 (296)
T CHL00174 137 LGVMDFQFMGGSMGSVVGEKITRLIEYA 164 (296)
T ss_pred EEEECCcccccCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999876
No 16
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=99.32 E-value=3.8e-12 Score=109.54 Aligned_cols=72 Identities=14% Similarity=0.122 Sum_probs=63.7
Q ss_pred CCCCCCCCHHHHHhhcccCCceEEeccCCC----CeEEEEEEEECCEEEEEEeeCCCcc--------CcccChhhhhHHH
Q psy5157 53 YDTTTPYDMHQIIYNVIDEREFFEIQPKYA----KNIIVGFARINGHSVGIVANQPKVA--------AGKWTFIHSFHPT 120 (129)
Q Consensus 53 ~~~~~~yD~revI~~l~D~~sF~El~~~yG----~~vvtG~arI~G~~VGvvAnd~~~~--------gG~l~~~~a~K~a 120 (129)
.++.+|+ ..+.|..|+|+ |+|++..|+ +++|||+|||+|++|+|||||+.+. .|++++++++|+.
T Consensus 135 Rhp~RP~-~~d~I~~i~dd--f~EL~Gdr~~~dD~aIVtG~grI~GrpV~VIandkg~~~ke~~~rnfG~~~peGyRKAl 211 (431)
T PLN03230 135 RHPNRPT-FLDHVLNMTDK--WVELHGDRAGFDDPAIVCGIGSMEGMSFMFIGHQKGRNTKENIYRNFAMPQPNGYRKAL 211 (431)
T ss_pred hCCCCCC-HHHHHHHhhhH--HhhhcCcccCCCCCCeEEEEEEECCEEEEEEEeccCcccccccccCCCCCCHHHHHHHH
Confidence 3444554 78999999994 999999999 9999999999999999999998653 5999999999999
Q ss_pred HHHHhhc
Q psy5157 121 SIALIYS 127 (129)
Q Consensus 121 rfv~l~~ 127 (129)
||+++|.
T Consensus 212 R~mklAe 218 (431)
T PLN03230 212 RFMRHAE 218 (431)
T ss_pred HHHHHHH
Confidence 9999994
No 17
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=99.31 E-value=3.7e-12 Score=106.53 Aligned_cols=68 Identities=15% Similarity=0.146 Sum_probs=62.5
Q ss_pred CCCHHHHHhhcccCCceEEeccCCC----CeEEEEEEEECCEEEEEEeeCCC--------ccCcccChhhhhHHHHHHHh
Q psy5157 58 PYDMHQIIYNVIDEREFFEIQPKYA----KNIIVGFARINGHSVGIVANQPK--------VAAGKWTFIHSFHPTSIALI 125 (129)
Q Consensus 58 ~yD~revI~~l~D~~sF~El~~~yG----~~vvtG~arI~G~~VGvvAnd~~--------~~gG~l~~~~a~K~arfv~l 125 (129)
....++.|..|+|+ |+|++..|+ +++|||+|||+|+||+|++||++ ..+|.+++.+.+|+.||+++
T Consensus 72 Rp~~~d~i~~l~d~--f~El~gd~~~~dd~avV~Glgri~GrpV~VIa~dkg~~~~e~~~~~~G~~~p~g~rKa~Rlm~l 149 (322)
T CHL00198 72 RPTTLDYIPYILDE--WIELHGDRGGSDDPALVGGIGKINGRTIVFLGHQRGRNTKENVLRNFGMPSPGGYRKALRLMKH 149 (322)
T ss_pred CCCHHHHHHHHhHH--HHHHccccccCCCCceEEEEEEECCEEEEEEEecCCccchhhhhhcCCCCCHHHHHHHHHHHHH
Confidence 34589999999995 999999997 99999999999999999999985 47899999999999999999
Q ss_pred hc
Q psy5157 126 YS 127 (129)
Q Consensus 126 ~~ 127 (129)
|.
T Consensus 150 A~ 151 (322)
T CHL00198 150 AN 151 (322)
T ss_pred HH
Confidence 94
No 18
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=99.26 E-value=1.2e-11 Score=107.70 Aligned_cols=72 Identities=18% Similarity=0.232 Sum_probs=66.4
Q ss_pred CCCCCCHHHHHhhcccCCceEEeccC-------------CCCeEEEEEEEECCEEEEEEeeCCCccCcccChhhhhHHHH
Q psy5157 55 TTTPYDMHQIIYNVIDEREFFEIQPK-------------YAKNIIVGFARINGHSVGIVANQPKVAAGKWTFIHSFHPTS 121 (129)
Q Consensus 55 ~~~~yD~revI~~l~D~~sF~El~~~-------------yG~~vvtG~arI~G~~VGvvAnd~~~~gG~l~~~~a~K~ar 121 (129)
.+..+.+||+|+.|+|++||.|++.. .+.++|||+|+|+|++|.|+++|++++||+++...++|..+
T Consensus 4 ~~Gk~~areRi~~L~D~gSF~E~~~~~~~~~~~~~~~~~p~~gvvtG~G~I~G~~v~v~a~D~t~~gGs~g~~~~~Ki~r 83 (493)
T PF01039_consen 4 ARGKLTARERIDLLLDPGSFRELGDLAGAARYKFGREKTPGDGVVTGIGKINGRPVVVIAQDFTVLGGSVGEVHGEKIAR 83 (493)
T ss_dssp HTTEEEHHHHHHHHSGTTEBEEESTTHHTTHCGGGGGH-TTTTEEEEEEEETTEEEEEEEEETTSGGGTBSHHHHHHHHH
T ss_pred ccCCcCHHHHHHHhcCCCCCcCchHHHhccccccccccCCCCcEEEEEEeeCCeeEEEEEeccceecCCCCcccceeeeh
Confidence 45678999999999999999999754 46799999999999999999999999999999999999999
Q ss_pred HHHhh
Q psy5157 122 IALIY 126 (129)
Q Consensus 122 fv~l~ 126 (129)
.+.+.
T Consensus 84 a~~~A 88 (493)
T PF01039_consen 84 AIELA 88 (493)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98876
No 19
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=99.25 E-value=1.9e-11 Score=98.38 Aligned_cols=59 Identities=14% Similarity=0.183 Sum_probs=55.1
Q ss_pred HHHHHhhcccCCceEEeccCCCCeEEEEEEEECCEEEEEEeeCCCccCcccChhhhhHHHHHHHhh
Q psy5157 61 MHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVANQPKVAAGKWTFIHSFHPTSIALIY 126 (129)
Q Consensus 61 ~revI~~l~D~~sF~El~~~yG~~vvtG~arI~G~~VGvvAnd~~~~gG~l~~~~a~K~arfv~l~ 126 (129)
-+++|+.|+|+++|+|+++ ++|||+|||+|++|+||+|++.. .++.+++.|.++|+++|
T Consensus 2 ~~~~l~~l~d~~~~~e~~~----~vv~G~arl~G~~V~vIa~~~~~---~~g~~~~~k~A~~v~~~ 60 (238)
T TIGR03134 2 GRDWLAALFPNGHEVAGDP----GVLVGSAELAGGKVTVIGVVPDA---EVGLDEALALAQAVLDV 60 (238)
T ss_pred HHHHHHHHcCCCcEEecCC----cEEEEEEEECCEEEEEEEECCCC---cCChHHHHHHHHHHHHH
Confidence 4789999999999999986 99999999999999999999864 88899999999999997
No 20
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=99.23 E-value=1.4e-11 Score=108.39 Aligned_cols=75 Identities=16% Similarity=0.192 Sum_probs=68.8
Q ss_pred cCCCCCCCCHHHHHhhcccCCceEEeccC------------CCCeEEEEEEEECCEEEEEEeeCCCccCcccChhhhhHH
Q psy5157 52 PYDTTTPYDMHQIIYNVIDEREFFEIQPK------------YAKNIIVGFARINGHSVGIVANQPKVAAGKWTFIHSFHP 119 (129)
Q Consensus 52 P~~~~~~yD~revI~~l~D~~sF~El~~~------------yG~~vvtG~arI~G~~VGvvAnd~~~~gG~l~~~~a~K~ 119 (129)
....++++.+||+|+.|+|+|||.|+.+. +|.++|||+|+|||++|.|+|||++++||++....++|.
T Consensus 36 ~~~~~GkltaReRv~~LlD~Gsf~El~~~a~~~~~~~~~~~~~dGvVtG~G~i~Gr~~~v~a~D~TV~gGt~~~~~~~Ki 115 (526)
T COG4799 36 KQHGKGKLTARERVELLLDPGSFLELGALAGHRMGGDANELPGDGVVTGIGTINGRKVFVFANDFTVKGGTLGEMTAKKI 115 (526)
T ss_pred hccccCcCcHHHHHHHHcCCCchhhhhhhhhcccccccccCCCCeeEEeeeeeCCeEEEEEEecCceecccccccccchH
Confidence 45678899999999999999999999753 456999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q psy5157 120 TSIALIY 126 (129)
Q Consensus 120 arfv~l~ 126 (129)
.|...+.
T Consensus 116 ~r~~~~A 122 (526)
T COG4799 116 LRAQELA 122 (526)
T ss_pred HHHHHHH
Confidence 9998876
No 21
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=99.12 E-value=8.4e-11 Score=106.70 Aligned_cols=65 Identities=20% Similarity=0.247 Sum_probs=57.6
Q ss_pred HHHHHhhcccCCceEEeccCCC----CeEEEEEEEECCEEEEEEeeCCCc--------cCcccChhhhhHHHHHHHhhc
Q psy5157 61 MHQIIYNVIDEREFFEIQPKYA----KNIIVGFARINGHSVGIVANQPKV--------AAGKWTFIHSFHPTSIALIYS 127 (129)
Q Consensus 61 ~revI~~l~D~~sF~El~~~yG----~~vvtG~arI~G~~VGvvAnd~~~--------~gG~l~~~~a~K~arfv~l~~ 127 (129)
.++.|..++| +|+|++..|+ +++|||+|||+|++|+|+|+|+++ .+|.+++.+++|++||+++|.
T Consensus 163 ~~Dyi~~i~d--df~EL~Gdr~~~dD~aIVtGlGRIdGrpV~VIAndkg~~tke~~~rnfG~~~peGyRKAlRlmkLAe 239 (762)
T PLN03229 163 FLDHIFNITD--KFVELHGDRAGYDDPAIVTGIGTIDGKRYMFIGHQKGRNTKENIMRNFGMPTPHGYRKALRMMYYAD 239 (762)
T ss_pred HHHHHHHHHH--HHHHhcCcccCCCCCCeEEEEEEECCEEEEEEEecCCccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence 5566666665 4999998877 899999999999999999999964 799999999999999999994
No 22
>KOG0368|consensus
Probab=98.97 E-value=4.3e-10 Score=107.64 Aligned_cols=93 Identities=26% Similarity=0.355 Sum_probs=80.4
Q ss_pred CCCCCcccCCCCCCCCcccccccccCCCCCCCCHHHHHhh----------cccCCceEEeccCCCCeEEEEEEEECCEEE
Q psy5157 28 GIAEQTNSHLNLMTQDVPVLDNIVPYDTTTPYDMHQIIYN----------VIDEREFFEIQPKYAKNIIVGFARINGHSV 97 (129)
Q Consensus 28 ~~~~p~~~~~d~~~~~~~~L~~ivP~~~~~~yD~revI~~----------l~D~~sF~El~~~yG~~vvtG~arI~G~~V 97 (129)
...+|..++.|+++++.+ ++|.+ ..+||+|..|+. |+|.+||+|+...|++++|||-||++|.||
T Consensus 1777 ~~~~P~l~~~D~~dR~ve----f~p~~-q~~yD~Rwli~G~~~~~~~~~GlFDk~SF~Eil~~WAktVV~GRArLgGIPv 1851 (2196)
T KOG0368|consen 1777 NSPVPFLEPKDPPDRDVE----FVPST-QNPYDPRWLIAGKNDSTGWLSGLFDKGSFDEILSGWAKTVVTGRARLGGIPV 1851 (2196)
T ss_pred CCCCCccCCCCCccccee----ccCCC-CCCCCHHHHhcCCcCCCccccccccCccHHHHHhHHhhHheecceecCCcce
Confidence 477888899999988764 67776 679999998873 999999999999999999999999999999
Q ss_pred EEEeeCC-----------C----------ccCcccChhhhhHHHHHHHh
Q psy5157 98 GIVANQP-----------K----------VAAGKWTFIHSFHPTSIALI 125 (129)
Q Consensus 98 GvvAnd~-----------~----------~~gG~l~~~~a~K~arfv~l 125 (129)
||||... + ..|-+|.+++|.|.++.+.=
T Consensus 1852 GVIavEtrtve~~vPADPan~dS~e~i~q~AGQVWyPdSAfKTaQAInD 1900 (2196)
T KOG0368|consen 1852 GVIAVETRTVENIVPADPANLDSEEQITQEAGQVWYPDSAFKTAQAIND 1900 (2196)
T ss_pred EEEEEEeeeeeeeccCCCCCCCcHhhhhhcCCceecCchHHHHHHHHhh
Confidence 9999853 2 25889999999999987753
No 23
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=98.79 E-value=2.6e-08 Score=82.18 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=69.0
Q ss_pred cccc-CCCCCCCCHHHHHhhcccCCceEEeccC--------------C-------------CCeEEEEEEEECCEEEEEE
Q psy5157 49 NIVP-YDTTTPYDMHQIIYNVIDEREFFEIQPK--------------Y-------------AKNIIVGFARINGHSVGIV 100 (129)
Q Consensus 49 ~ivP-~~~~~~yD~revI~~l~D~~sF~El~~~--------------y-------------G~~vvtG~arI~G~~VGvv 100 (129)
.++| .+.....+.+++|+.|+|++||.|+... | -.++|||.|+|+|.||.++
T Consensus 48 ~vcp~c~~h~ri~A~~Ri~~llD~gsf~el~~~l~~~dPL~F~d~k~Y~~rL~~a~~~tg~~davvtg~g~i~G~pvv~a 127 (294)
T COG0777 48 KVCPKCGHHMRISARERLEALLDEGSFEELDSPLEPKDPLKFPDSKKYKDRLEAARKKTGLDDAVVTGEGTINGLPVVLA 127 (294)
T ss_pred hcccccCcccccCHHHHHHHhhCCCcceecccCCCcCCcccCCcchhhHHHHHHHHhhcCCCcceEEEeeEECCeEEEEE
Confidence 4667 4666889999999999999999999652 2 2499999999999999999
Q ss_pred eeCCCccCcccChhhhhHHHHHHHhh
Q psy5157 101 ANQPKVAAGKWTFIHSFHPTSIALIY 126 (129)
Q Consensus 101 And~~~~gG~l~~~~a~K~arfv~l~ 126 (129)
+-|+.++||+++....+|++|.++..
T Consensus 128 v~df~FmgGSmGsVvGeki~ra~E~A 153 (294)
T COG0777 128 VMDFAFMGGSMGSVVGEKITRAIERA 153 (294)
T ss_pred EEeccccccchhHHHHHHHHHHHHHH
Confidence 99999999999999999999988765
No 24
>KOG0540|consensus
Probab=98.76 E-value=7.7e-09 Score=90.14 Aligned_cols=74 Identities=22% Similarity=0.218 Sum_probs=65.5
Q ss_pred CCCCCCCCHHHHHhhcccCCc-eEEeccC-----------CCCeEEEEEEEECCEEEEEEeeCCCccCcccChhhhhHHH
Q psy5157 53 YDTTTPYDMHQIIYNVIDERE-FFEIQPK-----------YAKNIIVGFARINGHSVGIVANQPKVAAGKWTFIHSFHPT 120 (129)
Q Consensus 53 ~~~~~~yD~revI~~l~D~~s-F~El~~~-----------yG~~vvtG~arI~G~~VGvvAnd~~~~gG~l~~~~a~K~a 120 (129)
..++.++-.||+|+.|+|++| |.|+... .+.+++||.|||+|+.|-+++||++++||++.+-.++|..
T Consensus 58 ~~srgkl~arerIdlLld~gs~Fie~d~fa~h~m~~~e~~ps~sIvtg~g~i~gr~~~vianDfTv~ggs~y~i~~kk~l 137 (536)
T KOG0540|consen 58 HHSRGKLLARERIDLLLDPGSPFIELDQFAGHEMYGKEKVPSGSIVTGRGRINGRKCFVIANDFTVKGGSYYPITVKKHL 137 (536)
T ss_pred hhhhcccchhhhhhhccCCCCcceehhhhhhhhhccccCCCCCceEeccccccceEEEEEccCchhcccccchhhHHHHh
Confidence 356778889999999999999 9998532 3669999999999999999999999999999999999998
Q ss_pred HHHHhh
Q psy5157 121 SIALIY 126 (129)
Q Consensus 121 rfv~l~ 126 (129)
|....-
T Consensus 138 r~~e~a 143 (536)
T KOG0540|consen 138 RAQEIA 143 (536)
T ss_pred hHHHHH
Confidence 876643
No 25
>PF03255 ACCA: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (6.4.1.2 from EC). It catalyses the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association []. The reaction involves two steps: Biotin carrier protein + ATP + HCO3 - -> Carboxybiotin carrier protein + ADP + Pi Carboxybiotin carrier protein + Acetyl-CoA -> Malonyl-CoA + Biotin carrier protein ; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex; PDB: 2F9I_A 2F9Y_A.
Probab=98.20 E-value=7.7e-06 Score=61.92 Aligned_cols=70 Identities=20% Similarity=0.257 Sum_probs=48.9
Q ss_pred CCCCCCCHHHHHhhcccCCceEEecc--CCC--CeEEEEEEEECCEEEEEEeeCCCc--------cCcccChhhhhHHHH
Q psy5157 54 DTTTPYDMHQIIYNVIDEREFFEIQP--KYA--KNIIVGFARINGHSVGIVANQPKV--------AAGKWTFIHSFHPTS 121 (129)
Q Consensus 54 ~~~~~yD~revI~~l~D~~sF~El~~--~yG--~~vvtG~arI~G~~VGvvAnd~~~--------~gG~l~~~~a~K~ar 121 (129)
++.+|+ ..+.|..|+| .|.|+.- .|| +++|+|+|+++|+||.|++.+-.. ..|...+.+=+|+.|
T Consensus 63 hp~Rp~-~~dyI~~l~~--df~ElhGDR~~~dD~AivgG~a~~~g~~V~vig~~KG~~~~e~~~rNFGm~~PeGYRKAlR 139 (145)
T PF03255_consen 63 HPDRPT-ALDYIENLFD--DFIELHGDRLFGDDPAIVGGIARFDGQPVTVIGQQKGRDTKENIKRNFGMPHPEGYRKALR 139 (145)
T ss_dssp BTTS---HHHHHHHH-E--EEEE----SSS---TTEEEEEEEETTEEEEEEEE---SSCCHHHHTGGG---HHHHHHHHH
T ss_pred CCCCCC-HHHHHHHHhC--cCeEecCCccCCcCccceeeeEEECCEEEEEEEEecCcCHHHHHHHcCCCCCcchHHHHHH
Confidence 334444 8899999999 4999963 465 599999999999999999998643 579999999999999
Q ss_pred HHHhh
Q psy5157 122 IALIY 126 (129)
Q Consensus 122 fv~l~ 126 (129)
++++.
T Consensus 140 lmk~A 144 (145)
T PF03255_consen 140 LMKQA 144 (145)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99863
No 26
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=97.16 E-value=0.00075 Score=56.54 Aligned_cols=72 Identities=19% Similarity=0.259 Sum_probs=57.3
Q ss_pred cCCCCCCCCHHHHHhhcccCCceEEecc--CCC--CeEEEEEEEECCEEEEEEeeCCCc--------cCcccChhhhhHH
Q psy5157 52 PYDTTTPYDMHQIIYNVIDEREFFEIQP--KYA--KNIIVGFARINGHSVGIVANQPKV--------AAGKWTFIHSFHP 119 (129)
Q Consensus 52 P~~~~~~yD~revI~~l~D~~sF~El~~--~yG--~~vvtG~arI~G~~VGvvAnd~~~--------~gG~l~~~~a~K~ 119 (129)
..++.+|| ..+.|+.|+++ |.|+.- .|+ +.+|.|+||++|+||.|+..+... .=|...+++=+|+
T Consensus 63 ARhp~RP~-tldyi~~i~~d--f~eL~GDR~f~dD~Aivgglar~~G~pv~vIG~qKG~dtk~~~~rNFGm~~PeGyRKA 139 (317)
T COG0825 63 ARHPDRPY-TLDYIELLFTD--FVELHGDRAFADDPAIVGGLARFGGQPVVVIGHQKGRDTKEKLKRNFGMPRPEGYRKA 139 (317)
T ss_pred hhCCCCCc-HHHHHHHHHhH--HHHhcCccccCcChhheeeeeeECCeeEEEEeeecCccchhHHHhcCCCCCchHHHHH
Confidence 44566677 77889999886 888863 354 589999999999999999998644 3367779999999
Q ss_pred HHHHHhh
Q psy5157 120 TSIALIY 126 (129)
Q Consensus 120 arfv~l~ 126 (129)
.|.+.+.
T Consensus 140 lRlm~~A 146 (317)
T COG0825 140 LRLMKLA 146 (317)
T ss_pred HHHHHHH
Confidence 9998774
No 27
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=63.45 E-value=12 Score=25.55 Aligned_cols=33 Identities=18% Similarity=0.470 Sum_probs=26.5
Q ss_pred CHHHHHhhcccCCc----eEEeccCCCCeEEEEEEEE
Q psy5157 60 DMHQIIYNVIDERE----FFEIQPKYAKNIIVGFARI 92 (129)
Q Consensus 60 D~revI~~l~D~~s----F~El~~~yG~~vvtG~arI 92 (129)
|+++.|+.+.+.+. .+-+...||.+..+|||+|
T Consensus 17 ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I 53 (84)
T PF01282_consen 17 EIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI 53 (84)
T ss_dssp HHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE
T ss_pred HHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE
Confidence 67888887765543 5667889999999999998
No 28
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=63.23 E-value=12 Score=26.64 Aligned_cols=36 Identities=14% Similarity=0.337 Sum_probs=29.3
Q ss_pred CCCHHHHHhhcccCCc----eEEeccCCCCeEEEEEEEEC
Q psy5157 58 PYDMHQIIYNVIDERE----FFEIQPKYAKNIIVGFARIN 93 (129)
Q Consensus 58 ~yD~revI~~l~D~~s----F~El~~~yG~~vvtG~arI~ 93 (129)
.-|+++-|+.+.+.+. .+-++..||.+..+|||+|-
T Consensus 33 r~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~IY 72 (99)
T PRK01178 33 RKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKVY 72 (99)
T ss_pred HHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEEE
Confidence 3578998888887653 56778999999999999983
No 29
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=46.21 E-value=28 Score=26.04 Aligned_cols=37 Identities=19% Similarity=0.360 Sum_probs=28.6
Q ss_pred CCCHHHHHhhccc-C--Cc--eEEeccCCCCeEEEEEEEECC
Q psy5157 58 PYDMHQIIYNVID-E--RE--FFEIQPKYAKNIIVGFARING 94 (129)
Q Consensus 58 ~yD~revI~~l~D-~--~s--F~El~~~yG~~vvtG~arI~G 94 (129)
.-|+++-|+.+.+ . +. .+-|...||.+..+|||.|-.
T Consensus 38 r~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~IYd 79 (132)
T PTZ00071 38 KKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLIYD 79 (132)
T ss_pred HHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEEEC
Confidence 3578998888877 2 33 466788999999999999843
No 30
>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]
Probab=45.26 E-value=26 Score=25.39 Aligned_cols=35 Identities=14% Similarity=0.297 Sum_probs=30.0
Q ss_pred CCCHHHHHhhcccCCc----eEEeccCCCCeEEEEEEEE
Q psy5157 58 PYDMHQIIYNVIDERE----FFEIQPKYAKNIIVGFARI 92 (129)
Q Consensus 58 ~yD~revI~~l~D~~s----F~El~~~yG~~vvtG~arI 92 (129)
.-|+|+-|+.+.|.+. .+.++..||.+-.+|++.|
T Consensus 34 r~evrekla~~l~~d~e~VvV~~ikt~fG~~~s~g~akI 72 (107)
T COG2004 34 RKEVREKLAAMLGADKELVVVDYIKTEFGKGRSKGYAKI 72 (107)
T ss_pred HHHHHHHHHHHHCCCcceEEEEehhhhcCCcceeEEEEE
Confidence 3589999999998876 5677889999999999998
No 31
>COG1886 FliN Flagellar motor switch/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.39 E-value=1.7e+02 Score=21.44 Aligned_cols=39 Identities=13% Similarity=0.218 Sum_probs=30.5
Q ss_pred CCCCCCHHHHHhhcccCCceEEeccCCCCeEEEEEEEECCEEEE
Q psy5157 55 TTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVG 98 (129)
Q Consensus 55 ~~~~yD~revI~~l~D~~sF~El~~~yG~~vvtG~arI~G~~VG 98 (129)
.+..+++.++++. ..||..|+....|..+ -..+||+.+|
T Consensus 80 Gr~~~~l~ell~l--~~Gsvi~Ld~~~~~~V---dI~vNg~~Ig 118 (136)
T COG1886 80 GRTKMPLGELLAL--GKGSVIELDKLAGEPV---DILVNGRLIG 118 (136)
T ss_pred eeeeeeHHHHHhc--CCCCEEEcCCcCCCce---EEEECCEEEE
Confidence 3467888888875 8899999998888766 3567888776
No 32
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=23.23 E-value=1.5e+02 Score=22.30 Aligned_cols=45 Identities=16% Similarity=0.253 Sum_probs=27.5
Q ss_pred CCCCHHHHHhhcccCCce-EEecc------CCCCeEEEEEEEECCEEEEEEee
Q psy5157 57 TPYDMHQIIYNVIDEREF-FEIQP------KYAKNIIVGFARINGHSVGIVAN 102 (129)
Q Consensus 57 ~~yD~revI~~l~D~~sF-~El~~------~yG~~vvtG~arI~G~~VGvvAn 102 (129)
.-||++.+++.|++.-.+ .++.. .|- ...++--.++|..||+++.
T Consensus 122 ~f~~~Kg~ve~ll~~l~~~~~~~~~~~~~~~~h-pg~~a~I~~~g~~vG~~G~ 173 (198)
T cd00769 122 DFYDAKGILEALLRALGIIVEFELEELDADLFH-PGRSAKIYVNGEVIGFIGE 173 (198)
T ss_pred CHhhHHHHHHHHHHHcCCeEEEEecCCCCCccC-CCceEEEEECCEEEEEEEe
Confidence 457788899998875433 22221 121 1225666678998998764
No 33
>KOG3155|consensus
Probab=22.73 E-value=42 Score=26.20 Aligned_cols=15 Identities=20% Similarity=0.406 Sum_probs=13.4
Q ss_pred cchhhhHHhhhhccc
Q psy5157 2 TDLLATCIDVLNSDA 16 (129)
Q Consensus 2 ~~~~~~~~d~~~~~~ 16 (129)
||+|.|||++++++-
T Consensus 39 ~DIvDEai~yFkaNv 53 (173)
T KOG3155|consen 39 TDIVDEAIYYFKANV 53 (173)
T ss_pred cchHHHHHHHhhccc
Confidence 689999999999886
Done!