RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5157
(129 letters)
>gnl|CDD|227136 COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase
component (subunits alpha and beta) [Lipid metabolism].
Length = 526
Score = 113 bits (286), Expect = 1e-30
Identities = 34/69 (49%), Positives = 46/69 (66%)
Query: 43 DVPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVAN 102
D LD+IVP D PYD+ ++I ++D+ EF E + YAKNI+ GFARI+G VGI+AN
Sbjct: 272 DDEELDSIVPDDPRKPYDVREVIARLVDDGEFLEFKAGYAKNIVTGFARIDGRPVGIIAN 331
Query: 103 QPKVAAGKW 111
QP+ G
Sbjct: 332 QPRHLGGVL 340
Score = 27.9 bits (63), Expect = 1.5
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 12/59 (20%)
Query: 65 IYNVIDEREFFEI-------QPKYAKN-----IIVGFARINGHSVGIVANQPKVAAGKW 111
+ ++D F E+ A ++ G ING V + AN V G
Sbjct: 49 VELLLDPGSFLELGALAGHRMGGDANELPGDGVVTGIGTINGRKVFVFANDFTVKGGTL 107
>gnl|CDD|216259 pfam01039, Carboxyl_trans, Carboxyl transferase domain. All of the
members in this family are biotin dependent
carboxylases. The carboxyl transferase domain carries
out the following reaction; transcarboxylation from
biotin to an acceptor molecule. There are two recognised
types of carboxyl transferase. One of them uses acyl-CoA
and the other uses 2-oxoacid as the acceptor molecule of
carbon dioxide. All of the members in this family
utilise acyl-CoA as the acceptor molecule.
Length = 487
Score = 108 bits (271), Expect = 1e-28
Identities = 37/74 (50%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 43 DVPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVAN 102
DV L +IVP D PYD+ ++I ++DE FFE + YAK ++ GFAR+ G VG+VAN
Sbjct: 240 DVEELVSIVPDDPKRPYDVREVIAGIVDEGSFFETKAGYAKTVVTGFARLGGIPVGVVAN 299
Query: 103 QPKVAAGKWTFIHS 116
QP+V AG FI S
Sbjct: 300 QPRVLAGVL-FIDS 312
>gnl|CDD|130187 TIGR01117, mmdA, methylmalonyl-CoA decarboxylase alpha subunit.
This model describes methymalonyl-CoA decarboxylase
aplha subunit in archaea and bacteria. Metylmalonyl-CoA
decarboxylase Na+ pump is a representative of a class of
Na+ transport decarboxylases that couples the energy
derived by decarboxylation of carboxylic acid substrates
to drive the extrusion of Na+ ion across the membrane
[Energy metabolism, ATP-proton motive force
interconversion, Energy metabolism, Fermentation,
Transport and binding proteins, Cations and iron
carrying compounds].
Length = 512
Score = 96.1 bits (239), Expect = 3e-24
Identities = 36/69 (52%), Positives = 49/69 (71%)
Query: 41 TQDVPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIV 100
T++ P L +++P + PYDM +I ++D ++ E+QP YA NII FARING SVGI+
Sbjct: 261 TRETPELYDLLPDNPNKPYDMRDVITAIVDNGDYLEVQPYYAPNIITCFARINGQSVGII 320
Query: 101 ANQPKVAAG 109
ANQPKV AG
Sbjct: 321 ANQPKVMAG 329
>gnl|CDD|178415 PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain.
Length = 569
Score = 57.1 bits (138), Expect = 1e-10
Identities = 24/60 (40%), Positives = 33/60 (55%)
Query: 43 DVPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVAN 102
DV L IVP D +D+ +I ++D EF E + Y ++ GFARI G VGI+ N
Sbjct: 319 DVKELRGIVPADHKQSFDVRSVIARIVDGSEFDEFKKNYGTTLVTGFARIYGQPVGIIGN 378
>gnl|CDD|215251 PLN02457, PLN02457, phenylalanine ammonia-lyase.
Length = 706
Score = 27.0 bits (60), Expect = 3.8
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 6/28 (21%)
Query: 71 EREFFEIQPKYAKNIIVGFARINGHSVG 98
E FFE+QPK G A +NG +VG
Sbjct: 234 EGGFFELQPKE------GLALVNGTAVG 255
>gnl|CDD|217457 pfam03255, ACCA, Acetyl co-enzyme A carboxylase carboxyltransferase
alpha subunit. Acetyl co-enzyme A carboxylase
carboxyltransferase is composed of an alpha and beta
subunit.
Length = 145
Score = 25.7 bits (57), Expect = 6.5
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 65 IYNVIDEREFFEIQPKYA----KNIIVGFARINGHSVGIVANQ 103
I N++D+ F E+ A I+ G RI+G V ++ +Q
Sbjct: 73 IENILDD--FIELHGDRAGADDPAIVGGLGRIDGRPVVVIGHQ 113
>gnl|CDD|143397 cd07078, ALDH, NAD(P)+ dependent aldehyde dehydrogenase family.
The aldehyde dehydrogenase family (ALDH) of NAD(P)+
dependent enzymes, in general, oxidize a wide range of
endogenous and exogenous aliphatic and aromatic
aldehydes to their corresponding carboxylic acids and
play an important role in detoxification. Besides
aldehyde detoxification, many ALDH isozymes possess
multiple additional catalytic and non-catalytic
functions such as participating in metabolic pathways,
or as binding proteins, or as osmoregulants, to mention
a few. The enzyme has three domains, a NAD(P)+
cofactor-binding domain, a catalytic domain, and a
bridging domain; and the active enzyme is generally
either homodimeric or homotetrameric. The catalytic
mechanism is proposed to involve cofactor binding,
resulting in a conformational change and activation of
an invariant catalytic cysteine nucleophile. The
cysteine and aldehyde substrate form an oxyanion
thiohemiacetal intermediate resulting in hydride
transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-like) proteins. The ALDH
proteins are represented by enzymes which share a number
of highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group.
Length = 432
Score = 26.0 bits (58), Expect = 6.8
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 82 AKNIIVGFARINGHSVGIVANQP 104
A+ + G IN +SVG + P
Sbjct: 381 AERLEAGTVWINDYSVGAEPSAP 403
>gnl|CDD|235580 PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase
subunit alpha; Validated.
Length = 319
Score = 25.9 bits (58), Expect = 7.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 85 IIVGFARINGHSVGIVANQ 103
I+ G AR+NG V ++ +Q
Sbjct: 98 IVGGLARLNGRPVMVIGHQ 116
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.396
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,456,533
Number of extensions: 565036
Number of successful extensions: 468
Number of sequences better than 10.0: 1
Number of HSP's gapped: 468
Number of HSP's successfully gapped: 17
Length of query: 129
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 43
Effective length of database: 7,123,158
Effective search space: 306295794
Effective search space used: 306295794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)