RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5157
(129 letters)
>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC,
PCC, CT, carboxyltransfe polyketide, fatty acid, PKS,
FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A*
3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A
Length = 530
Score = 129 bits (327), Expect = 1e-36
Identities = 37/69 (53%), Positives = 45/69 (65%)
Query: 41 TQDVPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIV 100
T + LD IVP PYDMH +I +V+D+ EFFE QP +A NI+ GF R+ G VGIV
Sbjct: 278 TDEDAELDTIVPDSANQPYDMHSVIEHVLDDAEFFETQPLFAPNILTGFGRVEGRPVGIV 337
Query: 101 ANQPKVAAG 109
ANQP AG
Sbjct: 338 ANQPMQFAG 346
>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A
{Sulfolobus tokodaii}
Length = 522
Score = 127 bits (321), Expect = 8e-36
Identities = 34/67 (50%), Positives = 45/67 (67%)
Query: 43 DVPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVAN 102
D ++ IVP D PY+M +IIY ++D EF E+ +A+NIIVGFARI G+ VGIVAN
Sbjct: 273 DATGVEQIVPNDAAKPYNMREIIYKIVDNGEFLEVHKHWAQNIIVGFARIAGNVVGIVAN 332
Query: 103 QPKVAAG 109
P+ G
Sbjct: 333 NPEEFGG 339
>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex,
biotin-dependent carboxylase, ligase; HET: BTI; 3.20A
{Roseobacter denitrificans}
Length = 531
Score = 126 bits (320), Expect = 1e-35
Identities = 36/67 (53%), Positives = 49/67 (73%)
Query: 43 DVPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVAN 102
P LD +VP + TPYDM ++I+ + DE +F+EIQ ++AKNII GF R+ G +VG+VAN
Sbjct: 286 IEPSLDTLVPDNPNTPYDMKELIHKLADEGDFYEIQEEFAKNIITGFIRLEGRTVGVVAN 345
Query: 103 QPKVAAG 109
QP V AG
Sbjct: 346 QPLVLAG 352
>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain
duplication, multienzyme complex, transcarboxylase; HET:
MCA; 1.90A {Propionibacterium freudenreichii} SCOP:
c.14.1.4 c.14.1.4 PDB: 1on9_A*
Length = 523
Score = 126 bits (320), Expect = 1e-35
Identities = 29/67 (43%), Positives = 42/67 (62%)
Query: 43 DVPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVAN 102
L +IVP D YD+ +I ++D ++ E++ YA N++ FAR+NG SVGIVAN
Sbjct: 274 PNTELRDIVPIDGKKGYDVRDVIAKIVDWGDYLEVKAGYATNLVTAFARVNGRSVGIVAN 333
Query: 103 QPKVAAG 109
QP V +G
Sbjct: 334 QPSVMSG 340
>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis,
accase, ligase, transferase; 2.2A {Mycobacterium
tuberculosis} PDB: 2a7s_A
Length = 548
Score = 126 bits (318), Expect = 3e-35
Identities = 36/69 (52%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 41 TQDVPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIV 100
T + LD ++P PYDMH++I ++D+ EF EIQ YA+NI+VGF RI+G VGIV
Sbjct: 294 TDEDLELDTLIPDSPNQPYDMHEVITRLLDD-EFLEIQAGYAQNIVVGFGRIDGRPVGIV 352
Query: 101 ANQPKVAAG 109
ANQP AG
Sbjct: 353 ANQPTHFAG 361
>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint
center for structural genomics, JCSG, protein structu
initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima}
SCOP: c.14.1.4 c.14.1.4
Length = 527
Score = 124 bits (314), Expect = 9e-35
Identities = 34/65 (52%), Positives = 46/65 (70%)
Query: 45 PVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVANQP 104
+ +I+P + YD+ +I V+D EFFE+QP +AKNI++GFARI G +VGIVANQP
Sbjct: 280 EDILDILPDNPNKGYDVRDVIKRVVDHGEFFEVQPYFAKNIVIGFARIQGKTVGIVANQP 339
Query: 105 KVAAG 109
V AG
Sbjct: 340 SVLAG 344
>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump,
carboxyltransferase, lyase; 2.20A {Acidaminococcus
fermentans} SCOP: c.14.1.4 c.14.1.4
Length = 587
Score = 102 bits (255), Expect = 1e-26
Identities = 20/81 (24%), Positives = 37/81 (45%)
Query: 47 LDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVANQPKV 106
L ++VP + YD++ +I + D E E + Y ++ G A++NG VG+VAN +
Sbjct: 309 LYSMVPLNDKRAYDIYNVIARLFDNSELHEYKKGYGPEMVTGLAKVNGLLVGVVANVQGL 368
Query: 107 AAGKWTFIHSFHPTSIALIYS 127
+ + +Y
Sbjct: 369 LMNYPEYKAAGSVGIGGKLYR 389
Score = 36.6 bits (85), Expect = 0.001
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 8/59 (13%)
Query: 65 IYNVIDEREFFEIQP--------KYAKNIIVGFARINGHSVGIVANQPKVAAGKWTFIH 115
I +++ + + + I+ G R+NG +VA+ K AG W
Sbjct: 67 IEKLVEPGSWRPLNTLFNPQGNKNGSVAIVKGLGRVNGKWCVVVASDNKKLAGAWVPGQ 125
>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport,
biotin, glutamate fermentation, lyase; HET: COO; 1.75A
{Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*
Length = 588
Score = 102 bits (255), Expect = 1e-26
Identities = 20/64 (31%), Positives = 36/64 (56%)
Query: 43 DVPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVAN 102
L +I+P + PYD++++I + D EF E + Y ++ G A++NG VG++AN
Sbjct: 308 PAEDLYSIIPMNQKRPYDIYEVIARLFDNSEFSEYKKGYGPEMVTGLAKVNGLLVGVIAN 367
Query: 103 QPKV 106
+
Sbjct: 368 VQGL 371
Score = 35.8 bits (83), Expect = 0.002
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 8/59 (13%)
Query: 65 IYNVIDEREFFEIQPKY--------AKNIIVGFARINGHSVGIVANQPKVAAGKWTFIH 115
I +ID + + + NI+ G R++G V IVA+ K AG W
Sbjct: 68 INALIDPGTWCPLNSLFNPENNKFGTTNIVNGLGRVDGKWVYIVASDNKKMAGAWVPGQ 126
>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid
synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A*
3tdc_A*
Length = 793
Score = 101 bits (252), Expect = 4e-26
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 43 DVPVLDNIVPYD-------TTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGH 95
++ + PYD P D+ F EI +A+ ++ G AR+ G
Sbjct: 368 EIEFQPSRGPYDPRWLLAGRPHPTLKGSWQSGFFDQGSFKEIMVPWAQTVVTGRARLGGI 427
Query: 96 SVGIVANQPKVAAG 109
VG++A + +
Sbjct: 428 PVGVIAAETRTVEL 441
>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit;
carboxyltransferase, beta-BETA-alpha superhelix, ligase;
HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B*
3u9t_B
Length = 555
Score = 93.4 bits (233), Expect = 1e-23
Identities = 18/57 (31%), Positives = 35/57 (61%)
Query: 47 LDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVANQ 103
L ++P D+ PYD+ ++I ++D EF E + + ++ GFA ++G+ + I+AN
Sbjct: 309 LYGVIPADSKQPYDVREVIARLVDGSEFDEFKALFGTTLVCGFAHLHGYPIAILANN 365
Score = 34.1 bits (79), Expect = 0.007
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 85 IIVGFARINGHSVGIVANQPKVAAGKWTFIH 115
I+ G R+ G IV N V G + +
Sbjct: 111 IVAGIGRVEGVECMIVGNDATVKGGTYYPLT 141
>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC
tepraloxydim, ATP-binding, biotin, fatty acid
biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae}
PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A*
3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A*
1uyt_A 1uyv_A
Length = 758
Score = 91.1 bits (226), Expect = 1e-22
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 11/73 (15%)
Query: 47 LDNIVPYDTTTPYDMHQII----------YNVIDEREFFEIQPKYAKNIIVGFARINGHS 96
+ P YD+ +I Y + D+ FFE +AK ++VG AR+ G
Sbjct: 355 PVDFTP-TNDETYDVRWMIEGRETESGFEYGLFDKGSFFETLSGWAKGVVVGRARLGGIP 413
Query: 97 VGIVANQPKVAAG 109
+G++ + +
Sbjct: 414 LGVIGVETRTVEN 426
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 4e-04
Identities = 21/129 (16%), Positives = 41/129 (31%), Gaps = 31/129 (24%)
Query: 10 DVLNSDAKF----NQNRSRQSRGIAEQTNSHLNLMTQDVPVLDNIVPYDTTTPYDMHQII 65
+VL + KF + RQ + + + D V Y+ + ++
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA---KYNVSRLQPYLKL- 140
Query: 66 YNVIDEREFFEIQPKYAKNIIV----GFARINGHSV--GIVANQPKVAAGK-----W-TF 113
+ E++P AKN+++ G G + V KV W
Sbjct: 141 -----RQALLELRP--AKNVLIDGVLGS----GKTWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 114 IHSFHPTSI 122
+ P ++
Sbjct: 190 KNCNSPETV 198
Score = 27.1 bits (59), Expect = 1.8
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 11/79 (13%)
Query: 15 DAKFNQNRSRQSRGIAEQTNSHLNLMTQDVPVLDNIVPYDTTTPYDMHQIIYNVIDEREF 74
D +F + + R + S LN + Q L PY +++ ++D F
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQ----LKFYKPYICDNDPKYERLVNAILD---F 551
Query: 75 FEIQPKYAKNIIVG-FARI 92
PK +N+I + +
Sbjct: 552 L---PKIEENLICSKYTDL 567
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.046
Identities = 14/83 (16%), Positives = 22/83 (26%), Gaps = 35/83 (42%)
Query: 37 LNLM--TQDVPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARING 94
L+ TQ P L T + + + I FA G
Sbjct: 1726 LSATQFTQ--PAL-------TLMEK----AAFEDL--KSKGLIPADAT------FA---G 1761
Query: 95 HSVG----IVANQPKVAAGKWTF 113
HS+G + + A +
Sbjct: 1762 HSLGEYAALAS-----LADVMSI 1779
Score = 30.8 bits (69), Expect = 0.13
Identities = 23/121 (19%), Positives = 33/121 (27%), Gaps = 48/121 (39%)
Query: 2 TDLLATCIDVLNSDAKFNQNRSRQSRGIAEQTNSHLNLMTQDVPVLDNIVPYDTTTPYDM 61
+ LL D++N D + + +PV YDT D+
Sbjct: 429 SHLLVPASDLINKDLV---------KNNVSFNAKDIQ-----IPV------YDTFDGSDL 468
Query: 62 HQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVANQPKVAAGKWTFIHSFHPTS 121
R + +I RI V + P V KW F T
Sbjct: 469 ----------RV-------LSGSIS---ERI----VDCIIRLP-V---KWETTTQFKATH 500
Query: 122 I 122
I
Sbjct: 501 I 501
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 27.4 bits (60), Expect = 1.4
Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 21/85 (24%)
Query: 56 TTPYDMHQIIYNVIDE--------REFFEIQPKYAKN--IIVG-----------FARING 94
+ YD++ ++ I E R + YA+ ++VG ++
Sbjct: 4 SAGYDLNAFTFDPIKESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPN 63
Query: 95 HSVGIVANQPKVAAGKWTFIHSFHP 119
V I+ G W F
Sbjct: 64 VQVAIIEQSVSPGGGAWLGGQLFSA 88
>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon,
crotonase superfamily, spiral domain, ligase; 3.20A
{Escherichia coli} SCOP: c.14.1.4
Length = 339
Score = 27.3 bits (61), Expect = 1.4
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 85 IIVGFARINGHSVGIVANQ 103
I+ G AR++G V I+ +Q
Sbjct: 121 IVGGIARLDGRPVMIIGHQ 139
>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha;
zinc ribbon, crotonase superfamily, spiral domain; 1.98A
{Staphylococcus aureus}
Length = 327
Score = 27.3 bits (61), Expect = 1.5
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 85 IIVGFARINGHSVGIVANQ 103
+I G +NG +V ++ Q
Sbjct: 107 MIGGIGFLNGRAVTVIGQQ 125
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.396
Gapped
Lambda K H
0.267 0.0820 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,913,154
Number of extensions: 103521
Number of successful extensions: 282
Number of sequences better than 10.0: 1
Number of HSP's gapped: 279
Number of HSP's successfully gapped: 23
Length of query: 129
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 46
Effective length of database: 4,384,350
Effective search space: 201680100
Effective search space used: 201680100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.6 bits)