RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5157
         (129 letters)



>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 404

 Score = 84.6 bits (209), Expect = 5e-21
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 11/76 (14%)

Query: 47  LDNIVPYDTTTPYDMHQII----------YNVIDEREFFEIQPKYAKNIIVGFARINGHS 96
             +  P      YD+  +I          Y + D+  FFE    +AK ++VG AR+ G  
Sbjct: 16  PVDFTP-TNDETYDVRWMIEGRETESGFEYGLFDKGSFFETLSGWAKGVVVGRARLGGIP 74

Query: 97  VGIVANQPKVAAGKWT 112
           +G++  + +       
Sbjct: 75  LGVIGVETRTVENLIP 90


>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit
           {Acidaminococcus fermentans [TaxId: 905]}
          Length = 299

 Score = 81.8 bits (201), Expect = 3e-20
 Identities = 19/64 (29%), Positives = 33/64 (51%)

Query: 43  DVPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVAN 102
               L ++VP +    YD++ +I  + D  E  E +  Y   ++ G A++NG  VG+VAN
Sbjct: 17  PADDLYSMVPLNDKRAYDIYNVIARLFDNSELHEYKKGYGPEMVTGLAKVNGLLVGVVAN 76

Query: 103 QPKV 106
              +
Sbjct: 77  VQGL 80


>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B
           subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}
          Length = 263

 Score = 73.3 bits (179), Expect = 2e-17
 Identities = 38/76 (50%), Positives = 46/76 (60%)

Query: 41  TQDVPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIV 100
           T +   LD IVP     PYDMH +I +V+D+ EFFE QP +A NI+ GF R+ G  VGIV
Sbjct: 11  TDEDAELDTIVPDSANQPYDMHSVIEHVLDDAEFFETQPLFAPNILTGFGRVEGRPVGIV 70

Query: 101 ANQPKVAAGKWTFIHS 116
           ANQP   AG      S
Sbjct: 71  ANQPMQFAGCLDITAS 86


>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B
           subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 271

 Score = 72.1 bits (176), Expect = 7e-17
 Identities = 36/70 (51%), Positives = 46/70 (65%), Gaps = 1/70 (1%)

Query: 47  LDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVANQPKV 106
           LD ++P     PYDMH++I  ++D+ EF EIQ  YA+NI+VGF RI+G  VGIVANQP  
Sbjct: 23  LDTLIPDSPNQPYDMHEVITRLLDD-EFLEIQAGYAQNIVVGFGRIDGRPVGIVANQPTH 81

Query: 107 AAGKWTFIHS 116
            AG      S
Sbjct: 82  FAGCLDINAS 91


>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase
           (transcarboxylase 12S) {Propionibacterium freudenreichii
           [TaxId: 1744]}
          Length = 264

 Score = 71.3 bits (174), Expect = 1e-16
 Identities = 30/70 (42%), Positives = 43/70 (61%)

Query: 47  LDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVANQPKV 106
           L +IVP D    YD+  +I  ++D  ++ E++  YA N++  FAR+NG SVGIVANQP V
Sbjct: 19  LRDIVPIDGKKGYDVRDVIAKIVDWGDYLEVKAGYATNLVTAFARVNGRSVGIVANQPSV 78

Query: 107 AAGKWTFIHS 116
            +G      S
Sbjct: 79  MSGCLDINAS 88


>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B
           subunit, PccB {Thermotoga maritima [TaxId: 2336]}
          Length = 264

 Score = 62.8 bits (152), Expect = 2e-13
 Identities = 35/70 (50%), Positives = 47/70 (67%)

Query: 47  LDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVGFARINGHSVGIVANQPKV 106
           + +I+P +    YD+  +I  V+D  EFFE+QP +AKNI++GFARI G +VGIVANQP V
Sbjct: 19  ILDILPDNPNKGYDVRDVIKRVVDHGEFFEVQPYFAKNIVIGFARIQGKTVGIVANQPSV 78

Query: 107 AAGKWTFIHS 116
            AG      S
Sbjct: 79  LAGVLDIDSS 88


>d2cc1a1 e.3.1.1 (A:27-293) beta-Lactamase, class A {Mycobacterium
           fortuitum [TaxId: 1766]}
          Length = 262

 Score = 26.8 bits (58), Expect = 0.73
 Identities = 7/57 (12%), Positives = 18/57 (31%)

Query: 32  QTNSHLNLMTQDVPVLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQPKYAKNIIVG 88
              + L+    ++       P DT+TP  +      ++        Q    ++ +  
Sbjct: 130 DERTRLDRWEVELNSAIPGDPRDTSTPAALAVGYRAILAGDALSPPQRGLLEDWMRA 186


>d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66)
          {Escherichia coli [TaxId: 562]}
          Length = 115

 Score = 23.4 bits (50), Expect = 7.9
 Identities = 7/33 (21%), Positives = 14/33 (42%)

Query: 46 VLDNIVPYDTTTPYDMHQIIYNVIDEREFFEIQ 78
          +++ ++P +TT P    Q      D +    I 
Sbjct: 16 LVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIH 48


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0433    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 460,782
Number of extensions: 18960
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 15
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.0 bits)