BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy516
(80 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CPQ1|COX6C_MOUSE Cytochrome c oxidase subunit 6C OS=Mus musculus GN=Cox6c PE=1
SV=3
Length = 76
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 46/68 (67%)
Query: 10 LPKPQLRNLLQSSIKVALVQGAVIAFGTAVAWKVLIMDPHKKAISEFYKTYDGEKDFERM 69
LPKPQ+R LL ++V + ++A G A A+K + +P KKA +EFY+ YD KDFE M
Sbjct: 7 LPKPQMRGLLAKRLRVHIAGAFIVALGVAAAYKFGVAEPRKKAYAEFYRNYDSMKDFEEM 66
Query: 70 KKAGLFEE 77
+KAG+F+
Sbjct: 67 RKAGIFQS 74
>sp|P11951|CX6C2_RAT Cytochrome c oxidase subunit 6C-2 OS=Rattus norvegicus GN=Cox6c2
PE=1 SV=3
Length = 76
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 47/68 (69%)
Query: 10 LPKPQLRNLLQSSIKVALVQGAVIAFGTAVAWKVLIMDPHKKAISEFYKTYDGEKDFERM 69
LPKPQ+R LL ++V +V V+A G A A+K + +P KKA ++FY+ YD KDFE M
Sbjct: 7 LPKPQMRGLLAKRLRVHIVGAFVVALGVAAAYKFGVAEPRKKAYADFYRNYDSMKDFEEM 66
Query: 70 KKAGLFEE 77
++AG+F+
Sbjct: 67 RQAGVFQS 74
>sp|Q0Q4Z0|COX6C_LAMPA Cytochrome c oxidase subunit 6C OS=Lama guanicoe pacos GN=COX6C
PE=3 SV=1
Length = 76
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 47/68 (69%)
Query: 10 LPKPQLRNLLQSSIKVALVQGAVIAFGTAVAWKVLIMDPHKKAISEFYKTYDGEKDFERM 69
LPKPQ+R LL ++V +V V+A G A A+K + +P KKA ++FY+ YD KDFE M
Sbjct: 7 LPKPQMRGLLAKRLRVHIVGAFVVALGVAAAYKFGVAEPRKKAYADFYRNYDSMKDFEEM 66
Query: 70 KKAGLFEE 77
++AG+F+
Sbjct: 67 RQAGVFQS 74
>sp|Q7YRK2|COX6C_MACSL Cytochrome c oxidase subunit 6C OS=Macaca silenus GN=COX6C PE=3
SV=1
Length = 75
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 46/68 (67%)
Query: 10 LPKPQLRNLLQSSIKVALVQGAVIAFGTAVAWKVLIMDPHKKAISEFYKTYDGEKDFERM 69
LPKPQ+R LL ++ +V G V++ G A +KV + D KKA ++FY+ YD KDFE M
Sbjct: 6 LPKPQMRGLLARRLRFHMVTGFVLSLGVAALYKVGVADKRKKAYADFYRNYDAMKDFEEM 65
Query: 70 KKAGLFEE 77
+KAG+F+
Sbjct: 66 RKAGIFQS 73
>sp|Q7YRK1|COX6C_TRACR Cytochrome c oxidase subunit 6C OS=Trachypithecus cristatus
GN=COX6C PE=3 SV=1
Length = 75
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 44/67 (65%)
Query: 10 LPKPQLRNLLQSSIKVALVQGAVIAFGTAVAWKVLIMDPHKKAISEFYKTYDGEKDFERM 69
LPKPQ+R LL ++ +V V++ G A +K + D KKA ++FY+ YD KDFE M
Sbjct: 6 LPKPQMRGLLAKRLRFHMVTAFVLSLGVAALYKFRVADKRKKAYADFYRNYDAMKDFEEM 65
Query: 70 KKAGLFE 76
+KAG+F+
Sbjct: 66 RKAGIFQ 72
>sp|Q7YRK7|COX6C_TARSY Cytochrome c oxidase subunit 6C OS=Tarsius syrichta GN=COX6C PE=3
SV=1
Length = 75
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 6 ATGKLPKPQLRNLLQSSIKVALVQGAVIAFGTAVAWKVLIMDPHKKAISEFYKTYDGEKD 65
++G L KPQ+R LL ++ +V ++ G A +K + +P KKA ++FY+ YD KD
Sbjct: 2 SSGALTKPQMRGLLAKRLRFHIVGAFAVSLGVAAFYKFAVAEPRKKAYADFYRNYDSMKD 61
Query: 66 FERMKKAGLFEE 77
FE M+KAG+F+
Sbjct: 62 FEEMRKAGIFQS 73
>sp|Q7YRK0|COX6C_CALDO Cytochrome c oxidase subunit 6C OS=Callicebus donacophilus
GN=COX6C PE=3 SV=1
Length = 75
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 46/71 (64%)
Query: 6 ATGKLPKPQLRNLLQSSIKVALVQGAVIAFGTAVAWKVLIMDPHKKAISEFYKTYDGEKD 65
A+ L KPQ+R LL +++ +V +++ G A +K + +P KKA ++FYK Y EKD
Sbjct: 2 ASEVLVKPQMRGLLARRLRIHMVGAFLVSLGVAALYKFGVAEPRKKAYADFYKNYSAEKD 61
Query: 66 FERMKKAGLFE 76
FE MKKAGLF
Sbjct: 62 FEEMKKAGLFR 72
>sp|Q7YRJ9|COX6C_SAISC Cytochrome c oxidase subunit 6C OS=Saimiri sciureus GN=COX6C PE=3
SV=1
Length = 75
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 46/71 (64%)
Query: 6 ATGKLPKPQLRNLLQSSIKVALVQGAVIAFGTAVAWKVLIMDPHKKAISEFYKTYDGEKD 65
A+ L KPQ+R LL +++ +V +I+ G A +K + +P KKA ++FYK Y EKD
Sbjct: 2 ASEVLAKPQMRGLLARRLRIHMVGAFLISLGVAALYKFGVAEPRKKAYADFYKNYSPEKD 61
Query: 66 FERMKKAGLFE 76
FE MKKAG+F
Sbjct: 62 FEEMKKAGVFR 72
>sp|Q7YRJ8|COX6C_NYCCO Cytochrome c oxidase subunit 6C OS=Nycticebus coucang GN=COX6C
PE=3 SV=1
Length = 75
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 6 ATGKLPKPQLRNLLQSSIKVALVQGAVIAFGTAVAWKVLIMDPHKKAISEFYKTYDGEKD 65
A+ L KPQ+R LL +++ +V V++ G A +K + +P KKA ++FY+ YD K
Sbjct: 2 ASSALAKPQMRGLLARRLRIHIVGAFVVSLGVAAFYKYAVAEPRKKAYADFYRNYDSVKY 61
Query: 66 FERMKKAGLFEE 77
FE M+KAG+F+
Sbjct: 62 FEEMRKAGVFQS 73
>sp|P09669|COX6C_HUMAN Cytochrome c oxidase subunit 6C OS=Homo sapiens GN=COX6C PE=1
SV=2
Length = 75
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%)
Query: 10 LPKPQLRNLLQSSIKVALVQGAVIAFGTAVAWKVLIMDPHKKAISEFYKTYDGEKDFERM 69
LPKP++R LL ++ + V++ G A +K + D KKA ++FY+ YD KDFE M
Sbjct: 6 LPKPRMRGLLARRLRNHMAVAFVLSLGVAALYKFRVADQRKKAYADFYRNYDVMKDFEEM 65
Query: 70 KKAGLFE 76
+KAG+F+
Sbjct: 66 RKAGIFQ 72
>sp|Q7YRK3|COX6C_PONPY Cytochrome c oxidase subunit 6C OS=Pongo pygmaeus GN=COX6C PE=3
SV=1
Length = 75
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%)
Query: 10 LPKPQLRNLLQSSIKVALVQGAVIAFGTAVAWKVLIMDPHKKAISEFYKTYDGEKDFERM 69
LPKP++R LL ++ + V++ G A +K + D KKA ++FY+ YD KDFE M
Sbjct: 6 LPKPRMRGLLARRLRNHMAVAFVLSLGVAALYKFRVADRRKKAYADFYRNYDVMKDFEEM 65
Query: 70 KKAGLFE 76
+KAG+F+
Sbjct: 66 RKAGIFQ 72
>sp|P04038|COX6C_BOVIN Cytochrome c oxidase subunit 6C OS=Bos taurus GN=COX6C PE=1 SV=2
Length = 74
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 10 LPKPQLRNLLQSSIKVALVQGAVIAFGTAVAWKVLIMDPHKKAISEFYKTYDGEKDFERM 69
L KPQ+R LL ++ +V +++ G A +K + + KKA ++FY+ YD KDFE M
Sbjct: 5 LAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEM 64
Query: 70 KKAGLFEE 77
+KAG+F+
Sbjct: 65 RKAGIFQS 72
>sp|A1XQT2|COX6C_PIG Cytochrome c oxidase subunit 6C OS=Sus scrofa GN=COX6C PE=3 SV=1
Length = 76
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 6 ATGKLPKPQLR-NLLQSSIKVALVQGAVIAFGTAVAWKVLIMDPHKKAISEFYKTYDGEK 64
AT L KPQ+R ++ +V +++ G A +K + +P KKA ++FY+ YD K
Sbjct: 2 ATSSLTKPQMRWPSGPRRLRFHIVGAFIVSLGVATFYKFAVAEPRKKAYADFYRNYDSMK 61
Query: 65 DFERMKKAGLFEE 77
DFE M+KAG+F+
Sbjct: 62 DFEEMRKAGIFQS 74
>sp|P11950|CX6C1_RAT Cytochrome c oxidase subunit 6C-1 OS=Rattus norvegicus GN=Cox6c1
PE=1 SV=3
Length = 76
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%)
Query: 10 LPKPQLRNLLQSSIKVALVQGAVIAFGTAVAWKVLIMDPHKKAISEFYKTYDGEKDFERM 69
LPKPQ+ + L + V +V ++ G A A K P KKA ++FY+ +D KDF+ M
Sbjct: 7 LPKPQMHDPLSKRLWVHIVGAFIVDLGVAAAHKFGAAKPRKKAYADFYRNHDPMKDFDEM 66
Query: 70 KKAGLFEE 77
+KAG+F
Sbjct: 67 RKAGVFRS 74
>sp|P80977|CX6C1_THUOB Cytochrome c oxidase subunit 6C-1 OS=Thunnus obesus PE=1 SV=2
Length = 76
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%)
Query: 10 LPKPQLRNLLQSSIKVALVQGAVIAFGTAVAWKVLIMDPHKKAISEFYKTYDGEKDFERM 69
L KP +R LL ++ L ++ A+ +K + +P K+A ++FYK YD KDF M
Sbjct: 3 LAKPAMRGLLGKRLRFHLPIAFTLSLVAALGFKYGVTEPRKQAYADFYKQYDAVKDFNAM 62
Query: 70 KKAGLFEE 77
++AG+FE
Sbjct: 63 REAGIFES 70
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,446,430
Number of Sequences: 539616
Number of extensions: 869998
Number of successful extensions: 2499
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2483
Number of HSP's gapped (non-prelim): 16
length of query: 80
length of database: 191,569,459
effective HSP length: 51
effective length of query: 29
effective length of database: 164,049,043
effective search space: 4757422247
effective search space used: 4757422247
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)